Citrus Sinensis ID: 045099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPSQ
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccEEccccccccccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccEEEEEccccccccccccccccccccccccHHHcccccccEEEcccccccccccccHHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHccccccccEEEEcccccccccccc
Coil and Loop (DISEMBL)
MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWvddgisdccdwerlkcnatagrVTELSLNRLKhykssnpnnssdgviildlslfppfqelqsldlsenwfggvseskaynssgnlkqlkilnlgnnrlnDSILSYLNTLTSLTTlilcdnsiegsrtkqglANLRYLQVldlsgnpitgRFIARLGLSslrnlkrldlsnnygfttpsq
Flexible Loop (DISEMBL)
MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHykssnpnnssDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLsslrnlkrldlsnnygfttpsq
Low Complexity Region (SEG)
MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDsilsylntltslttlilCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPSQ
Disordered region (IsUnstruct)
****DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLK************GVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY*******
Disordered Region (DISOPRED)
****DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP**
Disordered Region (DISEMBL)
MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPSQ
Disordered Region (DISPRO)
**GYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q9C9N5	685	Probable inactive leucine	no	no	0.788	0.249	0.336	2e-08
Q9LRT1	1016	Probably inactive leucine	no	no	0.778	0.166	0.323	3e-08
Q9C9H7	847	Receptor-like protein 12	no	no	0.852	0.218	0.293	5e-08
Q9LP24	1120	Probable leucine-rich rep	no	no	0.769	0.149	0.324	1e-07
Q9FL63	614	Inactive leucine-rich rep	no	no	0.635	0.224	0.355	2e-07
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.737	0.156	0.314	3e-07
Q05091	330	Polygalacturonase inhibit	N/A	no	0.820	0.539	0.287	3e-07
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.732	0.162	0.322	8e-07
Q00874	372	DNA-damage-repair/tolerat	no	no	0.746	0.435	0.300	1e-06
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.921	0.160	0.301	1e-06

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 90/193 (46%), Gaps = 22/193 (11%)

Query: 31  ADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSS--------- 81
           +D + T+W +   S+ C W+ + CN    RV  + L   +   S +P+  S         
Sbjct: 40  SDSVFTNW-NSSDSNPCSWQGVTCNYDM-RVVSIRLPNKRLSGSLDPSIGSLLSLRHINL 97

Query: 82  ---DGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138
              D    L + LF   + LQSL LS N F G    +     G+LK L  L+L  N  N 
Sbjct: 98  RDNDFQGKLPVELFG-LKGLQSLVLSGNSFSGFVPEEI----GSLKSLMTLDLSENSFNG 152

Query: 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL 198
           SI   L     L TL+L  NS  G       +NL +L+ L+LS N +TG     +G  SL
Sbjct: 153 SISLSLIPCKKLKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLSFNRLTGTIPEDVG--SL 210

Query: 199 RNLK-RLDLSNNY 210
            NLK  LDLS+N+
Sbjct: 211 ENLKGTLDLSHNF 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 91/210 (43%), Gaps = 41/210 (19%)

Query: 35  LTSWVDDGISDCCDWERLKCNATAGRVTELSLN----------------RLKHYKSSNPN 78
           L SW +D  +  C W  +KCN    RV ELSL+                RLK    SN N
Sbjct: 54  LESWTEDD-NTPCSWSYVKCNPKTSRVIELSLDGLALTGKINRGIQKLQRLKVLSLSNNN 112

Query: 79  --------NSSDGVIILDLS------LFP----PFQELQSLDLSENWFGGVSESKAYNSS 120
                   ++++ +  LDLS        P        LQ LDL+ N F G      +N  
Sbjct: 113 FTGNINALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFN-- 170

Query: 121 GNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT-KQGLANLRYLQVLD 179
            N   L+ L+L +N L   I S L   + L +L L  N   G+ +   G+  L  L+ LD
Sbjct: 171 -NCSSLRYLSLSHNHLEGQIPSTLFRCSVLNSLNLSRNRFSGNPSFVSGIWRLERLRALD 229

Query: 180 LSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           LS N ++G     LG+ SL NLK L L  N
Sbjct: 230 LSSNSLSGSI--PLGILSLHNLKELQLQRN 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 40/225 (17%)

Query: 7   CLEEERIGLLEIKRFFISINGGEYADEILTSWVD--DGISDCCDWERLKCNATAGRVTEL 64
           C +++R  LLE +  F  IN   +   I+  W    +  +DCC W  + CN  +G+V  L
Sbjct: 34  CRDDQRDALLEFRGEF-PINASWH---IMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISL 89

Query: 65  SLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSE-NWFGGVSES--------- 114
            +          PN   +  +  + SLF   Q L+ LDL+  N +G +  S         
Sbjct: 90  DI----------PNTFLNNYLKTNSSLFK-LQYLRHLDLTNCNLYGEIPSSLGNLSHLTL 138

Query: 115 ----------KAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSR 164
                     +   S GNL QL+ L L NN L   I S L  L+ L  L L  N + G +
Sbjct: 139 VNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVG-K 197

Query: 165 TKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
               + +L+ L+ L L+ N + G   + LG  +L NL  L L++N
Sbjct: 198 IPDSIGDLKQLRNLSLASNNLIGEIPSSLG--NLSNLVHLVLTHN 240

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 24/191 (12%)

Query: 35  LTSWVDDGISD----CCDWERLKCNATAGRVTELSLNR--LKHYKSSNPNNSSDGVIILD 88
           L+SWV D  ++    C  W  + CN+  G + EL+L    ++      P  S   +  +D
Sbjct: 50  LSSWVHDANTNTSFSCTSWYGVSCNS-RGSIEELNLTNTGIEGTFQDFPFISLSNLAYVD 108

Query: 89  LSL------FPP----FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138
           LS+       PP      +L   DLS N   G    +   S GNLK L +L L  N L  
Sbjct: 109 LSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTG----EISPSLGNLKNLTVLYLHQNYLTS 164

Query: 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL 198
            I S L  + S+T L L  N + GS     L NL+ L VL L  N +TG     LG  ++
Sbjct: 165 VIPSELGNMESMTDLALSQNKLTGS-IPSSLGNLKNLMVLYLYENYLTGVIPPELG--NM 221

Query: 199 RNLKRLDLSNN 209
            ++  L LS N
Sbjct: 222 ESMTDLALSQN 232

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL63|Y5410_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana GN=At5g24100 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 72/169 (42%), Gaps = 31/169 (18%)

Query: 46  CCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPP-----FQELQS 100
           C  W  + C+    RVT L L          P  S  GVI       PP       ELQ 
Sbjct: 59  CTTWPGVTCDIDGTRVTALHL----------PGASLLGVI-------PPGTISRLSELQI 101

Query: 101 LDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSI 160
           L L  N   G            LK+LK ++LGNNR +  + S   T T+LT L L  N  
Sbjct: 102 LSLRSNGLRGPFPIDFLQ----LKKLKAISLGNNRFSGPLPSDYATWTNLTVLDLYSNRF 157

Query: 161 EGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            GS    G ANL  L  L+L+ N  +G  I  L L  LR   RL+ SNN
Sbjct: 158 NGS-IPAGFANLTGLVSLNLAKNSFSGE-IPDLNLPGLR---RLNFSNN 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 94/210 (44%), Gaps = 50/210 (23%)

Query: 44  SDCCDWERLKCNAT----------AGRVTELSLNR-------------LKHYKSSN-PNN 79
           S+CCDW  + C ++          +GRV EL L R             L   K  N  +N
Sbjct: 61  SNCCDWVGISCKSSVSLGLDDVNESGRVVELELGRRKLSGKLSESVAKLDQLKVLNLTHN 120

Query: 80  SSDGVI-----------ILDLS------LFPPFQELQSL---DLSENWFGGVSESKAYNS 119
           S  G I           +LDLS      LFP    L SL   ++ EN F G+  +   N 
Sbjct: 121 SLSGSIAASLLNLSNLEVLDLSSNDFSGLFPSLINLPSLRVLNVYENSFHGLIPASLCN- 179

Query: 120 SGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLD 179
             NL +++ ++L  N  + SI   +   +S+  L L  N++ GS   Q L  L  L VL 
Sbjct: 180 --NLPRIREIDLAMNYFDGSIPVGIGNCSSVEYLGLASNNLSGS-IPQELFQLSNLSVLA 236

Query: 180 LSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L  N ++G   ++LG   L NL RLD+S+N
Sbjct: 237 LQNNRLSGALSSKLG--KLSNLGRLDISSN 264

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 27/205 (13%)

Query: 5   DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTEL 64
           D C  +++  LL+IK+ F    G  Y   +L SW  D  +DCCDW  + C++T  R+  L
Sbjct: 25  DLCNPDDKKVLLQIKKAF----GDPY---VLASWKSD--TDCCDWYCVTCDSTTNRINSL 75

Query: 65  SLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLK 124
           ++        +   +     ++ DL    P+ E        N  G +  + A      LK
Sbjct: 76  TI-------FAGQVSGQIPALVGDL----PYLETLEFHKQPNLTGPIQPAIA-----KLK 119

Query: 125 QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184
            LK L L    L+ S+  +L+ L +LT L L  N++ G+     L+ L  L  L L  N 
Sbjct: 120 GLKSLRLSWTNLSGSVPDFLSQLKNLTFLDLSFNNLTGA-IPSSLSELPNLGALRLDRNK 178

Query: 185 ITGRFIARLGLSSLRNLKRLDLSNN 209
           +TG      G   + N+  L LS+N
Sbjct: 179 LTGHIPISFG-QFIGNVPDLYLSHN 202

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 21/180 (11%)

Query: 45  DCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSS-DGVIILDLSL------FPP--- 94
           D C+W  +KCN  + +V EL ++        +P+ ++  G+ +LDLS        PP   
Sbjct: 52  DVCNWSGVKCNKESTQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIG 111

Query: 95  --FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL---NTLTS 149
              + L+ L LSEN   G          G L +L  L+LG+NRLN SI   L    + +S
Sbjct: 112 SLHETLKQLSLSENLLHG----NIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSS 167

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L  + L +NS+ G        +L+ L+ L L  N +TG   + L  S+  NLK +DL +N
Sbjct: 168 LQYIDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNST--NLKWMDLESN 225

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 21/183 (11%)

Query: 34  ILTSWVDDGISDCC-DWERLKCNATAGRVTELSLNRLKH---YKSSNPNNSSDGVI---I 86
           I  +W ++  +DCC +W  + C+  +GRVT++SL        ++ +  +    G I   +
Sbjct: 49  IFNTWSEN--TDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAV 106

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
            DL+       L SL L++ W G   E     +S  L  L+IL+L  N++   I + +  
Sbjct: 107 CDLT------ALTSLVLAD-WKGITGEIPPCITS--LASLRILDLAGNKITGEIPAEIGK 157

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L+ L  L L +N + G      L +L  L+ L+L+ N ITG   A  G  SL+ L R+ L
Sbjct: 158 LSKLAVLNLAENQMSG-EIPASLTSLIELKHLELTENGITGVIPADFG--SLKMLSRVLL 214

Query: 207 SNN 209
             N
Sbjct: 215 GRN 217

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 100/239 (41%), Gaps = 39/239 (16%)

Query: 3   GYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATA-GRV 61
           G  G +  +   LLE+K+  ++       D+ L  W  D I + C W  + C+ T   RV
Sbjct: 18  GQPGIINNDLQTLLEVKKSLVT---NPQEDDPLRQWNSDNI-NYCSWTGVTCDNTGLFRV 73

Query: 62  TELSLNRLKHYKSSNP-NNSSDGVIILDLS---LFPPFQ-------ELQSLDLSENWFGG 110
             L+L  L    S +P     D +I LDLS   L  P          L+SL L  N   G
Sbjct: 74  IALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTG 133

Query: 111 VSESK--------------------AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSL 150
              S+                       + GNL  L++L L + RL   I S L  L  +
Sbjct: 134 EIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRV 193

Query: 151 TTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            +LIL DN +EG    + L N   L V   + N + G   A LG   L NL+ L+L+NN
Sbjct: 194 QSLILQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELG--RLENLEILNLANN 249

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
297745031	869	unnamed protein product [Vitis vinifera]	0.949	0.237	0.423	1e-36
359482735	1097	PREDICTED: receptor-like protein 12-like	0.921	0.182	0.442	1e-34
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.976	0.198	0.429	1e-33
359482725	1144	PREDICTED: leucine-rich repeat receptor	0.940	0.178	0.421	6e-33
359483099	1231	PREDICTED: probable LRR receptor-like se	0.940	0.165	0.426	8e-33
10177158	888	disease resistance protein-like [Arabido	0.917	0.224	0.426	1e-32
297745128	938	unnamed protein product [Vitis vinifera]	0.921	0.213	0.427	1e-32
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.907	0.192	0.412	2e-32
240256417	908	receptor like protein 56 [Arabidopsis th	0.912	0.218	0.423	3e-32
12321378	1784	hypothetical protein [Arabidopsis thalia	0.847	0.103	0.422	8e-32

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 127/234 (54%), Gaps = 28/234 (11%)

Query: 1   MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGR 60
           +HGY  CLE+ER+GLLE KRF  S N  E AD +L SWV+D  SDCC WER+ CN+T G 
Sbjct: 19  IHGYKCCLEKERMGLLEFKRFLRSNN--EDADRLLPSWVNDEESDCCYWERVVCNSTTGT 76

Query: 61  VTELSLNRLKH---YKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAY 117
           VT+LSLN ++    Y              L++SLF PF+EL SLDLSENWF    E + +
Sbjct: 77  VTQLSLNNIRQIEFYHRVYGLAPPKKTWFLNVSLFHPFEELVSLDLSENWFADSLEDQGF 136

Query: 118 NSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGS-------------- 163
                LK+L++LN+G N  N+SI   +  LTSL  LIL +  +EGS              
Sbjct: 137 EKLKGLKKLEMLNIGQNYFNNSIFPSVGALTSLRVLILRETKLEGSYLDRVPFNNLEVLD 196

Query: 164 --------RTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
                        + NL  LQ L L+ N +TG      G   L+NL+ LDLS N
Sbjct: 197 LSNNRFTGSIPPYIWNLTSLQALSLADNQLTGPLPVE-GFCKLKNLQELDLSGN 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/208 (44%), Positives = 133/208 (63%), Gaps = 8/208 (3%)

Query: 6   GCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELS 65
           GC+EEE++GLLE K F + +N  E+AD +L SW+D+  S+CC+WER+ CN T G+V +L 
Sbjct: 25  GCIEEEKMGLLEFKAF-LKLND-EHADFLLPSWLDNNTSECCNWERVICNPTTGQVKKLF 82

Query: 66  LNRLKHYKSSNPNN----SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSG 121
           LN ++  ++   +N     +    +L++SLF PF+EL  L+LS N F G  E++ + S  
Sbjct: 83  LNDIRQQQNFLEDNWYYYENAKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEGFKSLS 142

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
            LK+L+ILNLG N  N +I+  L+ LTSL TL++ +N IEG    QG   L  LQ LDLS
Sbjct: 143 KLKKLEILNLGYNWFNKTIIKQLSGLTSLKTLVVSNNYIEGLFPSQGFCQLNKLQELDLS 202

Query: 182 GNPITGRFIARLGLSSLRNLKRLDLSNN 209
            N   G  I    L++L +L+ LDLS+N
Sbjct: 203 YNLFQG--ILPPCLNNLTSLRLLDLSSN 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 136/219 (62%), Gaps = 7/219 (3%)

Query: 3   GYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVT 62
           G  GC+EEE++GLLE K F + +N  E+AD +L SW+D+  S+CC+WER+ CN T GRV 
Sbjct: 22  GCKGCIEEEKMGLLEFKAF-LKLNN-EHADFLLPSWIDNNTSECCNWERVICNPTTGRVK 79

Query: 63  ELSLNRL--KHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSS 120
           +L  N +  +H + +     +    +L++SLF PF+EL  L+LS N F G  E++ + S 
Sbjct: 80  KLFFNDITRQHLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEGFKSL 139

Query: 121 GNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDL 180
             LK+L+ILNL +N+ N +I+  L+ LTSL TL++  N IEG    Q  A+L  L++LDL
Sbjct: 140 SKLKKLEILNLRDNQFNKTIIKQLSGLTSLKTLVVSYNYIEGLFPSQDFASLNNLEILDL 199

Query: 181 SG-NPITGRFIARLG-LSSLRNLKRLDLS-NNYGFTTPS 216
           S    +    I  L   +SL NLK LDLS N++    PS
Sbjct: 200 SDFASLNNLEILDLSDFASLSNLKVLDLSYNSFSGIVPS 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/211 (42%), Positives = 131/211 (62%), Gaps = 7/211 (3%)

Query: 3   GYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVT 62
           G  GC+EEE++GLLE K F + +N  E+AD +L SW+D+  S+CC+WER+ CN T GRV 
Sbjct: 22  GCKGCIEEEKMGLLEFKAF-LKLNN-EHADFLLPSWIDNNTSECCNWERVICNPTTGRVK 79

Query: 63  ELSLNRLKHYKSSNPNN----SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYN 118
           +L  N +   ++   +N     +    +L++SLF PF+EL  L+LS N F G  E++ + 
Sbjct: 80  KLFFNDITRQQNFLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEGFE 139

Query: 119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL 178
              +LK+L+IL++  N  + S L  L T+TSL TL +C   + GS + + LA+LR L+VL
Sbjct: 140 GLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICRMGLNGSFSIRELASLRNLEVL 199

Query: 179 DLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           DLS N +   F      +SL NL+ LDLS N
Sbjct: 200 DLSYNDLES-FQLLQDFASLSNLEVLDLSAN 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 131/211 (62%), Gaps = 7/211 (3%)

Query: 3   GYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVT 62
           G  GC+EEE++GLLE K F + +N G +AD +L SW+D+ ISDCC+WER+ CN T GRV 
Sbjct: 22  GCKGCIEEEKMGLLEFKAF-LKLNDG-HADFLLPSWIDNNISDCCNWERVICNPTTGRVK 79

Query: 63  ELSLNRLKHYKSSNPNN----SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYN 118
           +LSLN ++  ++    N     +    +L++SLF PF+EL  L+LS N F G  E++ + 
Sbjct: 80  KLSLNDIRQQQNMLEVNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEGFK 139

Query: 119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL 178
              +LK+L+IL++  N  + S L  L  +TSL TL +    ++GS   Q LA+ R L+VL
Sbjct: 140 GLSSLKKLEILDISGNEFDKSALKSLGAITSLKTLAIRSMGLDGSFPIQELASSRNLEVL 199

Query: 179 DLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           DLS N +   F    GL SL+ L+ L +S N
Sbjct: 200 DLSYNDLES-FQLVQGLLSLKKLEILAISGN 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 125/211 (59%), Gaps = 12/211 (5%)

Query: 1   MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGR 60
           +HG+  C+E+ER  LLE+K+F +S       D +L +W +D  SDCC WE +KCN T+ R
Sbjct: 7   LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTKSDCCQWENIKCNRTSRR 66

Query: 61  VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGG-VSESKAYNS 119
           +T LSL    + + S          +L+LSL  PF+E++SLDLS +   G V + + Y S
Sbjct: 67  LTGLSLYTSYYLEIS----------LLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKS 116

Query: 120 SGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLD 179
              L+ L+ILN  +N  N+SI  +LN  TSLTTL L  N++ G    + L NL  L++LD
Sbjct: 117 LRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLD 176

Query: 180 LSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           LSGN I G    R GL +L NL+ L L  NY
Sbjct: 177 LSGNRIDGSMPVR-GLKNLTNLEVLSLGYNY 206

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745128|emb|CBI38967.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 132/213 (61%), Gaps = 13/213 (6%)

Query: 6   GCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELS 65
           GC EEE++GLLE K F + +N  E AD +L SW+ + IS+CC WER+ C+ T  RV +LS
Sbjct: 33  GCNEEEKMGLLEFKAF-LKLNN-EKADLLLPSWIGNNISECCSWERVICDPTTSRVKKLS 90

Query: 66  LNRLKH-------YKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYN 118
           LN ++        Y  SN  N  D   +L+ SLF PF+ELQ L+LS N F G  +++ + 
Sbjct: 91  LNNIRQQQILLEDYGWSNYEN--DKFWLLNTSLFLPFEELQDLNLSANSFDGFIKNEGFK 148

Query: 119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL 178
           S  +LK+L+IL++  N  + S++  L+T+TSL TL+LC   +EGS   Q LA+LR L+ L
Sbjct: 149 SLSSLKKLEILDISGNEFDKSVIKSLSTITSLKTLVLCSIGLEGSFPVQELASLRSLEAL 208

Query: 179 DLSGNPITG--RFIARLGLSSLRNLKRLDLSNN 209
           DLS N +    +      LS L+ L+ L+L+ N
Sbjct: 209 DLSYNNLESFQQVQDSKSLSILKKLETLNLNQN 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/218 (41%), Positives = 131/218 (60%), Gaps = 21/218 (9%)

Query: 3   GYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVT 62
           G  GC++EE++GLLE K F + +N  E+AD +L SW+D+  S+CC+WER+ CN T GRV 
Sbjct: 22  GCKGCIKEEKMGLLEFKAF-LKLNN-EHADFLLPSWIDNNTSECCNWERVICNPTTGRVK 79

Query: 63  ELSLNRLK-----------HYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGV 111
           +L LN +            HY++           +L++SLF PF+EL  L+LS N F G 
Sbjct: 80  KLFLNDITRQQNFLEDDWYHYENVK-------FWLLNVSLFLPFEELHHLNLSANSFDGF 132

Query: 112 SESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171
            E++ +    +LK+L+IL++  N  + S L  L T+TSL TL +C   + GS + + LA+
Sbjct: 133 IENEGFKGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICSMGLNGSFSIRELAS 192

Query: 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           LR L+VLDLS N +   F      +SL NL+ LDLS N
Sbjct: 193 LRNLEVLDLSYNDLES-FQLLQDFASLSNLELLDLSYN 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 124/210 (59%), Gaps = 12/210 (5%)

Query: 1   MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGR 60
           +HG+  C+E+ER  LLE+K+F +S       D +L +W +D  SDCC WE +KCN T+ R
Sbjct: 7   LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTKSDCCQWENIKCNRTSRR 66

Query: 61  VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGG-VSESKAYNS 119
           +T LSL    + + S          +L+LSL  PF+E++SLDLS +   G V + + Y S
Sbjct: 67  LTGLSLYTSYYLEIS----------LLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKS 116

Query: 120 SGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLD 179
              L+ L+ILN  +N  N+SI  +LN  TSLTTL L  N++ G    + L NL  L++LD
Sbjct: 117 LRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLD 176

Query: 180 LSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           LSGN I G    R     L+ LK LDLS+N
Sbjct: 177 LSGNRIDGSMPVR-EFPYLKKLKALDLSSN 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12321378|gb|AAG50756.1|AC079131_1 hypothetical protein [Arabidopsis thaliana]

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 131/213 (61%), Gaps = 29/213 (13%)

Query: 1   MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGR 60
           M GY  C+E+ER GLLE+K +       EY+ +    W +D  SDCC WER++C+ T+GR
Sbjct: 22  MQGYISCIEKERKGLLELKAYV----NKEYSYD----WSNDTKSDCCRWERVECDRTSGR 73

Query: 61  VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSE----NWFGGVSESKA 116
           V  L LN+      S+P       I+++LSLF PF+EL++L+L +     WF  +     
Sbjct: 74  VIGLFLNQ----TFSDP-------ILINLSLFHPFEELRTLNLYDFGCTGWFDDI---HG 119

Query: 117 YNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ 176
           Y S G LK+L+IL++GNN +N+S+L +LN  +SL TLIL  N++EG+   + L +L  L+
Sbjct: 120 YKSLGKLKKLEILDMGNNEVNNSVLPFLNAASSLRTLILHGNNMEGTFPMKELKDLSNLE 179

Query: 177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           +LDLSGN + G      GL+ L  L  LDLS+N
Sbjct: 180 LLDLSGNLLNG---PVPGLAVLHKLHALDLSDN 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.907	0.216	0.379	2.9e-28
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.898	0.202	0.366	2.4e-27
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.903	0.209	0.356	9.8e-27
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.903	0.200	0.361	8.9e-25
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.866	0.173	0.339	1.7e-18
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.718	0.175	0.375	6.9e-18
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.843	0.209	0.331	2.5e-12
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.774	0.187	0.319	1.4e-11
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.751	0.170	0.320	2e-11
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.921	0.230	0.315	2.9e-11

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.9e-28, P = 2.9e-28
 Identities = 80/211 (37%), Positives = 114/211 (54%)

Query:     1 MHGYDGCLEEERIGLLEIKRFFIS-INGGEYADEILTSWVDDGISDCCDWERLKCNATAG 59
             +HG+  C+E+ER  LLE+K+F +S     EY D +L +W +D  SDCC WE +KCN T+ 
Sbjct:     7 LHGFSSCIEKERKALLELKKFVMSRCEECEY-DSVLPTWTNDTKSDCCQWENIKCNRTSR 65

Query:    60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGG-VSESKAYN 118
             R+T LSL    +Y           + +L+LSL  PF+E++SLDLS +   G V + + Y 
Sbjct:    66 RLTGLSLYT-SYYLE---------ISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYK 115

Query:   119 SSGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSIEGSRTKQGLANLRYLQVL 178
             S   L+ L+ILN  +N  N+                   N++ G    + L NL  L++L
Sbjct:   116 SLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELL 175

Query:   179 DLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             DLSGN I G    R     L+ LK LDLS+N
Sbjct:   176 DLSGNRIDGSMPVR-EFPYLKKLKALDLSSN 205

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.4e-27, P = 2.4e-27
 Identities = 77/210 (36%), Positives = 117/210 (55%)

Query:     1 MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGR 60
             +HGY  C++EE+I L E+++  IS    E    +L +W +D  SDCC W+ + CN  +GR
Sbjct:    21 LHGYKSCIDEEKIALFELRKHMISRTESE---SVLPTWTNDTTSDCCRWKGVACNRVSGR 77

Query:    61 VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSES-KAYNS 119
             VTE+S   L     S  +NS     +L+LSL  PF++++SL+LS +   G+ +  + Y S
Sbjct:    78 VTEISFGGL-----SLKDNS-----LLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKS 127

Query:   120 SGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSIEGSRTKQGLANLRYLQVLD 179
                L++L+IL+L +N+ N+                   N+++GS   + L +L  L++LD
Sbjct:   128 LRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLD 187

Query:   180 LSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             LS N   G  I    LSSLR LK LDLS N
Sbjct:   188 LSRNRFNGS-IPIQELSSLRKLKALDLSGN 216

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 9.8e-27, P = 9.8e-27
 Identities = 76/213 (35%), Positives = 115/213 (53%)

Query:     1 MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGR 60
             +HG   C+E+ER  LLE+K++ +S +     D +L +W +D  SDCC W+ +KCN T+GR
Sbjct:     7 LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTKSDCCQWDGIKCNRTSGR 66

Query:    61 VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSE---NWFGGVSES-KA 116
             V ELS+  + ++K S+P         L+LSL  PF+E++SL+LS    N F G  +  + 
Sbjct:    67 VIELSVGDM-YFKESSP---------LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEG 116

Query:   117 YNSSGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSIEGSRTKQGLANLRYLQ 176
             Y S   L+ LKI++L  N  N                    N ++G    +GL +L  L+
Sbjct:   117 YRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLE 176

Query:   177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             +LDL  N + G   +   L  L+ LK LDLS+N
Sbjct:   177 LLDLRANKLNG---SMQELIHLKKLKALDLSSN 206

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 8.9e-25, P = 8.9e-25
 Identities = 77/213 (36%), Positives = 112/213 (52%)

Query:     1 MHGYDGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGR 60
             + GY  C+E+ER  LLE+K++ IS       D +L +W +D  S+CC WE LKCN T+GR
Sbjct:    21 LRGYKCCIEKERKALLELKKYMISKTADWGLDSVLPTWTNDTKSNCCRWEGLKCNQTSGR 80

Query:    61 VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSE---NWFGGVSES-KA 116
             + ELS+ +  ++K S+         +L+LSL  PF+EL+SL+LS    N F G+ +  + 
Sbjct:    81 IIELSIGQT-NFKESS---------LLNLSLLHPFEELRSLNLSGEIYNEFNGLFDDVEG 130

Query:   117 YNSSGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSIEGSRTKQGLANLRYLQ 176
             Y S   L+ L+IL+L +N  N+                   N I G    + L NL  L+
Sbjct:   131 YESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIKELKNLTKLE 190

Query:   177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             +LDLS +   G        + L  LK LDLS N
Sbjct:   191 LLDLSRSGYNGSIPE---FTHLEKLKALDLSAN 220

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 69/203 (33%), Positives = 102/203 (50%)

Query:    13 IGLLEIKRFFISINGGEYADE----ILTSWVDDGISDCCDWERLKCN-ATAGRVTELSLN 67
             +GLL++K +  ++   E  +E    IL SW      DCC WER+KC+ A  G V  LSL+
Sbjct:     1 MGLLQLKSYLKNLVDAEEEEEEGLSILKSWTHHE-GDCCRWERVKCSDAINGHVIGLSLD 59

Query:    68 RLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSES-KAYNSSGNLKQL 126
             RL      +   S      L+LSL   F +LQSL+LS NWF  +S+    + S G L +L
Sbjct:    60 RLVPVAFESQTRS------LNLSLLHSFPQLQSLNLSWNWFTNLSDHFLGFKSFGTLDKL 113

Query:   127 KILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
               L+  +N  ++                   N +EG    Q L+N+  L+VL+L  N  +
Sbjct:   114 TTLDFSHNMFDNSIVPFLNAATSIRSLHLESNYMEGVFPPQELSNMTNLRVLNLKDNSFS 173

Query:   187 GRFIARLGLSSLRNLKRLDLSNN 209
               F++  GL+  R+L+ LDLS N
Sbjct:   174 --FLSSQGLTDFRDLEVLDLSFN 194

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 6.9e-18, P = 6.9e-18
 Identities = 62/165 (37%), Positives = 87/165 (52%)

Query:    46 CCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSE 105
             CC W R+KC+ T+ RV  +SL+     +S  P    D +  L+L+ F PF+ELQSL+LS 
Sbjct:     7 CCHWRRIKCDITSKRVIGISLS----LESIRP---PDPLPQLNLTFFYPFEELQSLNLSS 59

Query:   106 NWFGG-VSESKAYNSSGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSIEGSR 164
              +F G   E K     G+L+ L+ L+LG N  +                   DN  +G  
Sbjct:    60 GYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFKGGF 119

Query:   165 TKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
               Q L NL  L+VLDL  N  +G+   +  L++LRNL+ LDLSNN
Sbjct:   120 PVQELINLTSLEVLDLKFNKFSGQLPTQ-ELTNLRNLRALDLSNN 163

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 69/208 (33%), Positives = 86/208 (41%)

Query:     7 CLEEERIGLLEIKRFFISINGGEYA--DEILT-SWVDDGISDCCDWERLKCNATAGRVTE 63
             C  E+R  LLE K  F  I    +     + T SW ++G SDCC W+ + C+A  G V E
Sbjct:    30 CHFEQRDALLEFKNEF-KIKKPCFGCPSPLKTKSW-ENG-SDCCHWDGITCDAKTGEVIE 86

Query:    64 LSL--NRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSG 121
             + L  + L  +  SN N          LS+   F  L +LDLS N   G   S    S G
Sbjct:    87 IDLMCSCLHGWFHSNSN----------LSMLQNFHFLTTLDLSYNHLSGQISS----SIG 132

Query:   122 NLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSIEGSRTKQGLANLRYLQVLDLS 181
             NL  L  L+L  N  +                   DN+  G      L NL YL  LDLS
Sbjct:   133 NLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNF-GGEIPSSLGNLSYLTFLDLS 191

Query:   182 GNPITGRFIARLGLSSLRNLKRLDLSNN 209
              N   G   +  G  SL  L  L L NN
Sbjct:   192 TNNFVGEIPSSFG--SLNQLSILRLDNN 217

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 63/197 (31%), Positives = 86/197 (43%)

Query:    37 SWVDDGISDCCDWERLKCNATAGRVTELSLN--------------RLKHYKSS--NPNNS 80
             SW ++  SDCC+WE + CNA +G V EL+L+              R  H+ ++    +N 
Sbjct:    12 SWGNN--SDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLDRSHND 69

Query:    81 SDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDXX 140
              +G I    S       L SLDLS N F G    +  NS GNL +L  L+L  N+ +   
Sbjct:    70 FEGQIT---SSIENLSHLTSLDLSYNRFSG----QILNSIGNLSRLTSLDLSFNQFSGQI 122

Query:   141 XXXXXXXXXXXXXXXCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRN 200
                              N   G +    + NL +L  L LSGN   G+F + +G   L N
Sbjct:   123 PSSIGNLSHLTFLGLSGNRFFG-QIPSSIGNLSHLTFLGLSGNRFFGQFPSSIG--GLSN 179

Query:   201 LKRLDLS-NNYGFTTPS 216
             L  L LS N Y    PS
Sbjct:   180 LTNLHLSYNKYSGQIPS 196

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 60/187 (32%), Positives = 84/187 (44%)

Query:    37 SWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGV---IILDLSLFP 93
             SW ++  SDCC+WE + CNA +G V EL L+    +   + N+S   +     LDLS F 
Sbjct:    75 SWGNN--SDCCNWEGVTCNAKSGEVIELDLSCSSLHGRFHSNSSIRNLHFLTTLDLS-FN 131

Query:    94 PFQ-----------ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDXXXX 142
              F+            L  LDLS N F G    +  NS GNL +L  LNL +N+ +     
Sbjct:   132 DFKGQITSSIENLSHLTYLDLSSNHFSG----QILNSIGNLSRLTYLNLFDNQFSGQAPS 187

Query:   143 XXXXXXXXXXXXXCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLK 202
                            N   G +    +  L +L  L L  N  +G+  + +G  +L NL 
Sbjct:   188 SICNLSHLTFLDLSYNRFFG-QFPSSIGGLSHLTTLSLFSNKFSGQIPSSIG--NLSNLT 244

Query:   203 RLDLSNN 209
              LDLSNN
Sbjct:   245 TLDLSNN 251

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 72/228 (31%), Positives = 97/228 (42%)

Query:     7 CLEEERIGLLEIKRFF-ISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELS 65
             C  E+R  LLE+K+ F I     +       SW ++  SDCC W+ + CN  +G V EL 
Sbjct:    39 CRLEQRDALLELKKEFKIKKPCFDGLHPTTESWANN--SDCCYWDGITCNDKSGEVLELD 96

Query:    66 LNRLKHYKSSNPNNSSDGVI------ILDLSL------FPP----FQELQSLDLSENWFG 109
             L+R       + N+S   V+       LDLS        P     F  L +LDLS+N+F 
Sbjct:    97 LSRSCLQSRFHSNSSLFTVLNLRFLTTLDLSYNYFSGQIPSCIENFSHLTTLDLSKNYFS 156

Query:   110 GVSESKAYNSSGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSIEGSRTKQGL 169
             G   S    S GNL QL  L+L  N                       N + G      L
Sbjct:   157 GGIPS----SIGNLSQLTFLDLSGNEFVGEMPFFGNMNQLTNLYVD-SNDLTGI-FPLSL 210

Query:   170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL-SNNYGFTTPS 216
              NL++L  L LS N  TG   + +  SSL NL+  +   N +  T PS
Sbjct:   211 LNLKHLSDLSLSRNQFTGTLPSNM--SSLSNLEYFEAWGNAFTGTLPS 256

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 123 LKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSG 182
           L+ L+ +NL  N +  +I   L ++TSL  L L  NS  GS   + L  L  L++L+L+G
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNG 499

Query: 183 NPITGRFIARLGLSSLRNLKRLDLSNNYG 211
           N ++GR  A LG   L      + ++N G
Sbjct: 500 NSLSGRVPAALGGRLLHR-ASFNFTDNAG 527

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 93  PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTT 152
              + LQS++LS N   G        S G++  L++L+L  N  N SI   L  LTSL  
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494

Query: 153 LILCDNSIEG 162
           L L  NS+ G
Sbjct: 495 LNLNGNSLSG 504

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           L++LDLS N   G    +  N  G+   LK+L+LG N L   I + L  LTSL  L L  
Sbjct: 142 LETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           N + G   ++ L  ++ L+ + L  N ++G     +G   L +L  LDL  N
Sbjct: 198 NQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYN 246

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 10/156 (6%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNL 123
           L  + L+  K +N      G+ +L   L      L+ L L  N   G S      +    
Sbjct: 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164

Query: 124 KQLKILNLGNNRLNDSILSYL----NTLTSLTTLILCDNSIE---GSRTKQGLANLRYLQ 176
           + LK LNL NN + D+ +  L        +L  L L +N +     S   + LA+L+ L+
Sbjct: 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224

Query: 177 VLDLSGNPITGRFIARLG---LSSLRNLKRLDLSNN 209
           VL+L  N +T    A L    LS   +L  L LS N
Sbjct: 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 96  QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLIL 155
           + L++LDLS N F G    K     G+L +L  L L  N+L+  I   L++   L +L L
Sbjct: 475 KRLENLDLSRNQFSGAVPRKL----GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
             N + G +     + +  L  LDLS N ++G     LG  ++ +L ++++S+N+
Sbjct: 531 SHNQLSG-QIPASFSEMPVLSQLDLSQNQLSGEIPKNLG--NVESLVQVNISHNH 582

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           L  LDL  N   G   S    S GNLK L+ L L  N+L+  I   + +L  L +L L D
Sbjct: 238 LNHLDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           NS+ G    + +  L+ L++L L  N  TG+    + L+SL  L+ L L +N
Sbjct: 294 NSLSG-EIPELVIQLQNLEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSN 342

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 28/189 (14%)

Query: 35  LTSWVDDGISDCCDWERLKCNATAGRVTELSLN-------------RLKHYKSSN-PNNS 80
           L++W  +  +D C W+ + CN ++ RV  + L+             RL + ++ N  NN 
Sbjct: 48  LSNW--NSSADVCLWQGITCNNSS-RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104

Query: 81  SDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI 140
             G I  D+  F     L+ L+LS N F G          G++  L+ L+L NN L+  I
Sbjct: 105 LSGPIPDDI--FTTSSSLRYLNLSNNNFTGSI------PRGSIPNLETLDLSNNMLSGEI 156

Query: 141 LSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRN 200
            + + + +SL  L L  N + G +    L NL  L+ L L+ N + G+    LG   +++
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELG--QMKS 213

Query: 201 LKRLDLSNN 209
           LK + L  N
Sbjct: 214 LKWIYLGYN 222

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 10/114 (8%)

Query: 97  ELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLIL 155
            LQ L L+ N +FGG+ +S      G+ K+L+ L+L  N+ + ++   L +L+ L  L L
Sbjct: 453 SLQMLSLARNKFFGGLPDS-----FGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506

Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            +N + G    + L++ + L  LDLS N ++G+  A    S +  L +LDLS N
Sbjct: 507 SENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPA--SFSEMPVLSQLDLSQN 557

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
           +L +L L +N +           L  L+VLDLSGN +T   I+    S L +L+ LDLS 
Sbjct: 1   NLKSLDLSNNRLTVIPDGA-FKGLPNLKVLDLSGNNLT--SISPEAFSGLPSLRSLDLSG 57

Query: 209 N 209
           N
Sbjct: 58  N 58

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 129 LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR 188
           L L N  L   I + ++ L  L ++ L  NSI G+     L ++  L+VLDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS 481

Query: 189 FIARLGLSSLRNLKRLDLSNNY 210
               LG   L +L+ L+L+ N 
Sbjct: 482 IPESLGQ--LTSLRILNLNGNS 501

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 44/135 (32%), Positives = 54/135 (40%), Gaps = 14/135 (10%)

Query: 75  SNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN 134
           S    SS       L+L P    L SLDL+ N           +    L  L  L+L NN
Sbjct: 76  SPSGISSLDGSENLLNLLP----LPSLDLNLNRL-----RSNISELLELTNLTSLDLDNN 126

Query: 135 RLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG 194
            + D         ++L  L L DN IE       L NL  L+ LDLS N ++      L 
Sbjct: 127 NITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS 183

Query: 195 LSSLRNLKRLDLSNN 209
             S  NL  LDLS N
Sbjct: 184 NLS--NLNNLDLSGN 196

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 43/115 (37%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 96  QELQSLDLSENWFGG-VSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
           Q+L SLDLS+N   G + E         L+ L+IL+L +N     I   L +L  L  L 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVI-----QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L  N   G   K  L     L VLDLS N +TG      GL S  NL +L L +N
Sbjct: 339 LWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPE--GLCSSGNLFKLILFSN 390

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 121 GNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDL 180
           G +K LK + LG N L+  I   +  LTSL  L L  N++ G      L NL+ LQ L L
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFL 267

Query: 181 SGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
             N ++G       + SL+ L  LDLS+N 
Sbjct: 268 YQNKLSGPIPP--SIFSLQKLISLDLSDNS 295

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 17/132 (12%)

Query: 92  FPPFQELQSLDLSENWF---GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL---- 144
                 L+ LDL+ N     G  + ++   S   LK L++LNLG+N L D+  + L    
Sbjct: 189 LKANCNLEVLDLNNNGLTDEGASALAETLAS---LKSLEVLNLGDNNLTDAGAAALASAL 245

Query: 145 -NTLTSLTTLILCDNSIE--GSRT-KQGLANLRYLQVLDLSGNPIT---GRFIARLGLSS 197
            +   SL TL L  N I   G++   + LA    L  LDL GN       + +A   L  
Sbjct: 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEP 305

Query: 198 LRNLKRLDLSNN 209
              L+ L + ++
Sbjct: 306 GNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 125 QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184
            LK L+L NNRL          L +L  L L  N++    + +  + L  L+ LDLSGN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI-SPEAFSGLPSLRSLDLSGNN 59

Query: 185 I 185
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           L++LDLS N       S       NL  L  L+L  N+++D +   +  L++L  L L +
Sbjct: 165 LKNLDLSFN-----DLSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSN 218

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPSQ 217
           NSI        L+NL+ L  L+LS N +         + +L NL+ LDLSNN   +  S 
Sbjct: 219 NSII--ELLSSLSNLKNLSGLELSNNKLEDLP---ESIGNLSNLETLDLSNNQISSISSL 273

Length = 394

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 23/118 (19%)

Query: 97  ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGN---NRLNDSILSYLNTLTSLTTL 153
           EL  +DLS N  G  +  +  N   N++ L+++N  +    R  D + S L  L      
Sbjct: 31  ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLL----- 85

Query: 154 ILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG--LSSLRNLKRLDLSNN 209
                        + L     LQ +DLS N     F   LG  +SS  +L  L L+NN
Sbjct: 86  -------------KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130

Length = 388

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 36/134 (26%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNL---KQLKILNLGNNRLN------DSI 140
            L P    LQ L L  N    + E  A   +  L     LK L L  N          S+
Sbjct: 17  ELLPKLLCLQVLRLEGN---TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL 73

Query: 141 LSYLNTLTSLTTLILCDNSI--EGSRTKQGLANLRYLQVLDLSGNPIT---GRFIARLGL 195
           L  L     L  L L DN++  +G    + L     LQ L L+ N +     R +A+   
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133

Query: 196 SSLRNLKRLDLSNN 209
                L++L L  N
Sbjct: 134 DLPPALEKLVLGRN 147

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN03150	623	hypothetical protein; Provisional	99.71
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.44
PLN03150	623	hypothetical protein; Provisional	99.42
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.35
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.34
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.07
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.0
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.96
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.96
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.79
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.66
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.63
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.55
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.34
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.16
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.15
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.86
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.51
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.31
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.19
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.08
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.85
PRK15386	426	type III secretion protein GogB; Provisional	96.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.16
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.06
PRK15386	426	type III secretion protein GogB; Provisional	95.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.6
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.81
smart00370	26	LRR Leucine-rich repeats, outliers.	94.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.61
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.31
smart00370	26	LRR Leucine-rich repeats, outliers.	93.3
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.3
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.08
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.86
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.51
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.84
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.45
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.81
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	85.51
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.81

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=1.1e-23  Score=194.54  Aligned_cols=195  Identities=27%  Similarity=0.356  Sum_probs=120.8

Q ss_pred             CHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCccccceEEcCCCCcEEEEecCCccccCCCCCCCC-CCCcee
Q 045099            8 LEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNS-SDGVII   86 (217)
Q Consensus         8 ~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~-~~~~~~   86 (217)
                      ++.|+.||++||+.+.++.      ..+.+|..  ..+||.|.|+.|+. .++|+.++++++.+.+..++... ...+..
T Consensus        27 ~~~~~~~l~~~~~~~~~~~------~~~~~w~~--~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSINDPL------KYLSNWNS--SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCc------ccCCCCCC--CCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCE
Confidence            6789999999999997654      56789975  56899999999985 56999999999988876543211 011111


Q ss_pred             -----------ecCCCCCCCCCccEEECCCCcCCCccCcc------------------hhhcccCCCCCCEEEccCCCCC
Q 045099           87 -----------LDLSLFPPFQELQSLDLSENWFGGVSESK------------------AYNSSGNLKQLKILNLGNNRLN  137 (217)
Q Consensus        87 -----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------~~~~~~~l~~L~~L~L~~n~l~  137 (217)
                                 ++...+..+.+|++|++++|.+++.+|..                  ....++.+++|++|++++|.+.
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence                       11112334555666666655555544320                  0014455555666666666555


Q ss_pred             ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +.+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++.+|.  .++.+++|++|++++|++++.
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~  251 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTGP  251 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCCh--hHhcCCCCCEEECcCceeccc
Confidence            55555555566666666666665555554 555666666666666666655555  556666666666666665543

>PLN03150 hypothetical protein; Provisional

Probab=99.71  E-value=2e-16  Score=139.64  Aligned_cols=157  Identities=25%  Similarity=0.281  Sum_probs=118.2

Q ss_pred             CCCCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCc----cccceEEcCC--C--CcEEEEecCCccccCCCC
Q 045099            5 DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCC----DWERLKCNAT--A--GRVTELSLNRLKHYKSSN   76 (217)
Q Consensus         5 ~~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c----~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~   76 (217)
                      ..+.+.|.+||+++|..+..+.        ..+|..   .+|+    .|.|+.|...  .  ..|+.++|+++.+.|.+ 
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~--------~~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i-  434 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL--------RFGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-  434 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc--------cCCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC-
Confidence            4567789999999999885432        247964   2332    7999999521  1  25888888888887543 


Q ss_pred             CCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEcc
Q 045099           77 PNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILC  156 (217)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~  156 (217)
                                  +..+..+++|+.|+|++|.+.+.+|.    .+..+++|+.|+|++|.+++.+|..++.+++|+.|+++
T Consensus       435 ------------p~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        435 ------------PNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             ------------CHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence                        23466788888999999988888887    78888889999999999888888888888889999999


Q ss_pred             CccccCccchHhhcC-CCCCCEEEccCCcCccccc
Q 045099          157 DNSIEGSRTKQGLAN-LRYLQVLDLSGNPITGRFI  190 (217)
Q Consensus       157 ~n~l~~~~p~~~~~~-l~~L~~L~L~~n~l~~~~p  190 (217)
                      +|+++|.+|. .+.. ..++..+++.+|......|
T Consensus       499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPA-ALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCCh-HHhhccccCceEEecCCccccCCC
Confidence            8888888887 4544 3466778888876444333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.63  E-value=1.1e-15  Score=141.66  Aligned_cols=115  Identities=32%  Similarity=0.356  Sum_probs=65.9

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|.+.+..|.    .+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.+|. .+..
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~  234 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGG  234 (968)
T ss_pred             HhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhc
Confidence            44556666666666666655554    555566666666666666555555555566666666666655555554 4555


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                      +++|++|++++|.+++.+|.  .++++++|+.|++++|++++
T Consensus       235 l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPS--SLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             CCCCCEEECcCceeccccCh--hHhCCCCCCEEECcCCeeec
Confidence            55555555555555555554  45555555555555555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=1.1e-16  Score=116.28  Aligned_cols=136  Identities=26%  Similarity=0.354  Sum_probs=88.7

Q ss_pred             CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099           58 AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN  137 (217)
Q Consensus        58 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  137 (217)
                      .+.++.+.++.+.+.              +-++.+..+.+|+.|++++|+++..++     .+..+++|+.|+++-|++.
T Consensus        32 ~s~ITrLtLSHNKl~--------------~vppnia~l~nlevln~~nnqie~lp~-----~issl~klr~lnvgmnrl~   92 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT--------------VVPPNIAELKNLEVLNLSNNQIEELPT-----SISSLPKLRILNVGMNRLN   92 (264)
T ss_pred             hhhhhhhhcccCcee--------------ecCCcHHHhhhhhhhhcccchhhhcCh-----hhhhchhhhheecchhhhh
Confidence            357888999998876              223345667777777777777766554     5666777777777777665


Q ss_pred             ccchHHhhcCCCCCEEEccCccccC------------------------ccchHhhcCCCCCCEEEccCCcCcccccccc
Q 045099          138 DSILSYLNTLTSLTTLILCDNSIEG------------------------SRTKQGLANLRYLQVLDLSGNPITGRFIARL  193 (217)
Q Consensus       138 ~~~p~~~~~l~~L~~L~l~~n~l~~------------------------~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~  193 (217)
                       ..|..|+.++.|+.||+.+|++..                        .+|+ .++++++|+.|.+..|.+.. +|.  
T Consensus        93 -~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~-lpk--  167 (264)
T KOG0617|consen   93 -ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLS-LPK--  167 (264)
T ss_pred             -cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhh-CcH--
Confidence             566666777777777776666542                        2333 45566666666666666553 555  


Q ss_pred             cccCCCCCCEEeccCCCCCCCCCC
Q 045099          194 GLSSLRNLKRLDLSNNYGFTTPSQ  217 (217)
Q Consensus       194 ~l~~l~~L~~L~l~~N~l~~~p~~  217 (217)
                      .++.+.+|++|++.+|.++-+|||
T Consensus       168 eig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHHHHHHHHhcccceeeecChh
Confidence            666666666666666666666664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.44  E-value=4e-14  Score=119.66  Aligned_cols=96  Identities=28%  Similarity=0.223  Sum_probs=63.4

Q ss_pred             cccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099          119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL  198 (217)
Q Consensus       119 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l  198 (217)
                      .|.++++|+.|.|.+|.++......|..+.++++|+|+.|+++ .+-.+++-+++.|++|+|+.|.+....++  .|.-.
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d--~Wsft  316 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHID--SWSFT  316 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecc--hhhhc
Confidence            3444444444444444444333334445666777777777776 34444666778888888888888877777  66777


Q ss_pred             CCCCEEeccCCCCCCCCCC
Q 045099          199 RNLKRLDLSNNYGFTTPSQ  217 (217)
Q Consensus       199 ~~L~~L~l~~N~l~~~p~~  217 (217)
                      ++|+.|+|++|+++.++++
T Consensus       317 qkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             ccceeEeccccccccCChh
Confidence            8889999999988888763

>PLN03150 hypothetical protein; Provisional

Probab=99.42  E-value=7.2e-13  Score=117.17  Aligned_cols=112  Identities=29%  Similarity=0.426  Sum_probs=98.9

Q ss_pred             CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099           97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ  176 (217)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  176 (217)
                      .++.|+|++|.+++.+|.    .+..+++|+.|+|++|.+.|.+|..++.+++|+.|++++|+++|.+|. .+..+++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence            377899999999999988    889999999999999999999999999999999999999999998887 799999999


Q ss_pred             EEEccCCcCcccccccccccCC-CCCCEEeccCCC-CCCCC
Q 045099          177 VLDLSGNPITGRFIARLGLSSL-RNLKRLDLSNNY-GFTTP  215 (217)
Q Consensus       177 ~L~L~~n~l~~~~p~~~~l~~l-~~L~~L~l~~N~-l~~~p  215 (217)
                      +|+|++|.++|.+|.  .+... .++..+++.+|. +.+.|
T Consensus       494 ~L~Ls~N~l~g~iP~--~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        494 ILNLNGNSLSGRVPA--ALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             EEECcCCcccccCCh--HHhhccccCceEEecCCccccCCC
Confidence            999999999999998  66553 467789999886 44443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.35  E-value=9.5e-15  Score=106.26  Aligned_cols=100  Identities=29%  Similarity=0.352  Sum_probs=83.6

Q ss_pred             CCCCCCCCCccEEECCCCcCCCc-cCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchH
Q 045099           89 LSLFPPFQELQSLDLSENWFGGV-SESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQ  167 (217)
Q Consensus        89 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~  167 (217)
                      +..|+.++.|+.||+.+|++... .|.    .|-.+..|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+- .+|. 
T Consensus        95 prgfgs~p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk-  167 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK-  167 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH-
Confidence            55788899999999998888764 344    6667888888999999988 78899999999999999999987 5786 


Q ss_pred             hhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099          168 GLANLRYLQVLDLSGNPITGRFIARLGLSSL  198 (217)
Q Consensus       168 ~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l  198 (217)
                      .++.+..|+.|++.+|+++- +|.  .++++
T Consensus       168 eig~lt~lrelhiqgnrl~v-lpp--el~~l  195 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLTV-LPP--ELANL  195 (264)
T ss_pred             HHHHHHHHHHHhcccceeee-cCh--hhhhh
Confidence            89999999999999999995 555  55544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.34  E-value=2e-13  Score=110.94  Aligned_cols=145  Identities=30%  Similarity=0.382  Sum_probs=116.1

Q ss_pred             cEEEEecCCccccCCCCCCCC-----------CCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCE
Q 045099           60 RVTELSLNRLKHYKSSNPNNS-----------SDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKI  128 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~  128 (217)
                      -|+.++++++.+..- +....           .++.....+..++.+++|..|++++|.+...+.     +++.+..|+.
T Consensus       389 ~Vt~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~-----e~~~lv~Lq~  462 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE-----EMGSLVRLQT  462 (565)
T ss_pred             ceEEEecccchHhhh-hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch-----hhhhhhhhhe
Confidence            489999999987632 21100           012222234457789999999999999887654     7788889999


Q ss_pred             EEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccC
Q 045099          129 LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN  208 (217)
Q Consensus       129 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~  208 (217)
                      |+++.|+|. .+|..+-.+..+|.+-.+.|++. .+++..+.++.+|..|||.+|.+.. +|+  .++++.+|++|.+.+
T Consensus       463 LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNdlq~-IPp--~LgnmtnL~hLeL~g  537 (565)
T KOG0472|consen  463 LNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNNDLQQ-IPP--ILGNMTNLRHLELDG  537 (565)
T ss_pred             ecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCchhh-CCh--hhccccceeEEEecC
Confidence            999999998 78988888888888888889997 6777679999999999999999996 777  899999999999999


Q ss_pred             CCCCCCCC
Q 045099          209 NYGFTTPS  216 (217)
Q Consensus       209 N~l~~~p~  216 (217)
                      |.|+ .|+
T Consensus       538 Npfr-~Pr  544 (565)
T KOG0472|consen  538 NPFR-QPR  544 (565)
T ss_pred             CccC-CCH
Confidence            9998 554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.31  E-value=1.7e-12  Score=110.02  Aligned_cols=122  Identities=26%  Similarity=0.300  Sum_probs=69.4

Q ss_pred             eecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccc
Q 045099           86 ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT  165 (217)
Q Consensus        86 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  165 (217)
                      .++...|.++++|+++++..|.++..+.     ......+|+.|+|.+|.|+..-.+.++.++.|+.|||+.|.|+ .+|
T Consensus        92 ~id~~~f~nl~nLq~v~l~~N~Lt~IP~-----f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~  165 (873)
T KOG4194|consen   92 HIDFEFFYNLPNLQEVNLNKNELTRIPR-----FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIP  165 (873)
T ss_pred             cCcHHHHhcCCcceeeeeccchhhhccc-----ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-ccc
Confidence            4455566677777777777777765432     2222334666666666666555556666666666666666665 344


Q ss_pred             hHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ...+..-.++++|+|++|+++..-..  .|..+.+|..|.|+.|+++.+|
T Consensus       166 ~~sfp~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp  213 (873)
T KOG4194|consen  166 KPSFPAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLP  213 (873)
T ss_pred             CCCCCCCCCceEEeeccccccccccc--cccccchheeeecccCcccccC
Confidence            43444445566666666666543333  4444555555555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=3.2e-12  Score=95.03  Aligned_cols=125  Identities=30%  Similarity=0.381  Sum_probs=52.0

Q ss_pred             cEEEEecCCccccCCCCCCCCCCCceeecCCCCC-CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFP-PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      +...++|+++.+.             .+  +.++ .+.+|+.|++++|.++...      .+..+++|++|++++|+++.
T Consensus        20 ~~~~L~L~~n~I~-------------~I--e~L~~~l~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen   20 KLRELNLRGNQIS-------------TI--ENLGATLDKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS--S--T------T----TT--EEE--SS---S
T ss_pred             ccccccccccccc-------------cc--cchhhhhcCCCEEECCCCCCcccc------CccChhhhhhcccCCCCCCc
Confidence            5677888888876             11  2344 4788999999999998754      56789999999999999985


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccc--cccccCCCCCCEEec
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIA--RLGLSSLRNLKRLDL  206 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~--~~~l~~l~~L~~L~l  206 (217)
                      ..+.....+++|+.|++++|+|...-....+..+++|+.|++.+|+++.. +.  ...+..+|+|+.||-
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            43332346899999999999997432223577889999999999998853 32  115677899998885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.24  E-value=4e-13  Score=114.76  Aligned_cols=150  Identities=24%  Similarity=0.236  Sum_probs=90.5

Q ss_pred             CcEEEEecCCccccCCCCCCCCC--CC--ceeec-------CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSS--DG--VIILD-------LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK  127 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~--~~--~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~  127 (217)
                      .-|.++|+++|.++|...|+...  ..  ...++       +..++.+.+|++|.++.|++.....     .+..+++|+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG-----ELs~Lp~LR   81 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG-----ELSDLPRLR   81 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh-----hhccchhhH
Confidence            35788999999998766554211  01  11111       2234456667777777777665433     556666666


Q ss_pred             EEEccCCCCC-ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099          128 ILNLGNNRLN-DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL  206 (217)
Q Consensus       128 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l  206 (217)
                      .+.+..|++. .-+|..+..+..|..|||++|+++ +.|. .+.+.+++-.|+|++|++.. ||.. .+-++..|-.|||
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~-~LE~AKn~iVLNLS~N~Iet-IPn~-lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPT-NLEYAKNSIVLNLSYNNIET-IPNS-LFINLTDLLFLDL  157 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcch-hhhhhcCcEEEEcccCcccc-CCch-HHHhhHhHhhhcc
Confidence            6666666664 235566666666666777777666 4565 56666666666666666664 4432 4455666666666


Q ss_pred             cCCCCCCCCCC
Q 045099          207 SNNYGFTTPSQ  217 (217)
Q Consensus       207 ~~N~l~~~p~~  217 (217)
                      ++|++..+||+
T Consensus       158 S~NrLe~LPPQ  168 (1255)
T KOG0444|consen  158 SNNRLEMLPPQ  168 (1255)
T ss_pred             ccchhhhcCHH
Confidence            66666666653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.20  E-value=2e-11  Score=99.09  Aligned_cols=90  Identities=27%  Similarity=0.248  Sum_probs=72.2

Q ss_pred             cccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099          119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL  198 (217)
Q Consensus       119 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l  198 (217)
                      .|..+++|++|+|++|++++.-+..|.++.++++|.|..|++. .+....|..+..|+.|+|.+|+++..-|.  .|..+
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~--aF~~~  345 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPG--AFQTL  345 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecc--ccccc
Confidence            3667888888888888888777778888888888888888887 45555788888888888888888877776  77778


Q ss_pred             CCCCEEeccCCCC
Q 045099          199 RNLKRLDLSNNYG  211 (217)
Q Consensus       199 ~~L~~L~l~~N~l  211 (217)
                      .+|..|+|-.|.|
T Consensus       346 ~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  346 FSLSTLNLLSNPF  358 (498)
T ss_pred             ceeeeeehccCcc
Confidence            8888888887765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=3.7e-11  Score=89.31  Aligned_cols=113  Identities=32%  Similarity=0.347  Sum_probs=43.5

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhccc-CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSG-NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      +.+...+++|+|.+|.|+...      .+. .+.+|+.|++++|.++. + +.+..++.|+.|++++|+++. +......
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~   85 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDK   85 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHH
T ss_pred             ccccccccccccccccccccc------chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHH
Confidence            445567899999999998753      344 57899999999999984 3 357789999999999999984 5542234


Q ss_pred             CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      .+++|+.|++++|++... .+-..+..+++|+.|++.+|.++..
T Consensus        86 ~lp~L~~L~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             H-TT--EEE-TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             hCCcCCEEECcCCcCCCh-HHhHHHHcCCCcceeeccCCcccch
Confidence            689999999999999863 2111567899999999999988754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.15  E-value=2.6e-12  Score=109.90  Aligned_cols=146  Identities=32%  Similarity=0.344  Sum_probs=84.7

Q ss_pred             cEEEEecCCccccCCCCC----------CCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEE
Q 045099           60 RVTELSLNRLKHYKSSNP----------NNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKIL  129 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L  129 (217)
                      .++.+||+.|.+......          +.+.+.+..++.+.|.++.-|-+|||++|++...+|     .+..+..|++|
T Consensus       104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-----Q~RRL~~LqtL  178 (1255)
T KOG0444|consen  104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP-----QIRRLSMLQTL  178 (1255)
T ss_pred             cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH-----HHHHHhhhhhh
Confidence            567788888877532111          233344445555566667777778888888777666     45566666666


Q ss_pred             EccCCCCCcc-------------------------chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCc
Q 045099          130 NLGNNRLNDS-------------------------ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP  184 (217)
Q Consensus       130 ~L~~n~l~~~-------------------------~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~  184 (217)
                      .|++|.+...                         +|..+..+.+|..+|++.|.+. .+|. .+-++++|+.|+|++|.
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCc
Confidence            6666655322                         3333444445555555555554 3444 45556666666666666


Q ss_pred             CcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          185 ITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       185 l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ++. +..  ..+.+.+|+.|+++.|+++.+|
T Consensus       257 ite-L~~--~~~~W~~lEtLNlSrNQLt~LP  284 (1255)
T KOG0444|consen  257 ITE-LNM--TEGEWENLETLNLSRNQLTVLP  284 (1255)
T ss_pred             eee-eec--cHHHHhhhhhhccccchhccch
Confidence            653 222  3445556666666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=9.2e-12  Score=98.15  Aligned_cols=114  Identities=31%  Similarity=0.324  Sum_probs=84.1

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      ..-++.++.|+++.|.+....      .++.+++|+.|||++|.++. +..+-..+.+.+.|.++.|.+.. +.  .+..
T Consensus       303 vKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~-LS--GL~K  372 (490)
T KOG1259|consen  303 VKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET-LS--GLRK  372 (490)
T ss_pred             hhhccceeEEeccccceeeeh------hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhh-hh--hhHh
Confidence            344577777888888776543      56778888888888888762 33333456677788888888763 32  4778


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +.+|.+||+++|++....... .++++|.|+++.|.+|.+.++|.
T Consensus       373 LYSLvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  373 LYSLVNLDLSSNQIEELDEVN-HIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhheeccccccchhhHHHhc-ccccccHHHHHhhcCCCccccch
Confidence            889999999999988532211 68999999999999999998864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.07  E-value=1.3e-12  Score=106.25  Aligned_cols=111  Identities=31%  Similarity=0.395  Sum_probs=67.4

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY  174 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~  174 (217)
                      ++.|++||...|-++..+|     .++.+.+|.-|++..|++. .+| .|.++..|.++.++.|.+. .+|......+.+
T Consensus       182 m~~L~~ld~~~N~L~tlP~-----~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~  253 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPP-----ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNS  253 (565)
T ss_pred             HHHHHhcccchhhhhcCCh-----hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccc
Confidence            5666666666666655444     5666666666666666665 334 4555555555666556555 355434446666


Q ss_pred             CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +.+|||..|+++. .|+  .+.-+++|.+||+++|.++++|.
T Consensus       254 l~vLDLRdNklke-~Pd--e~clLrsL~rLDlSNN~is~Lp~  292 (565)
T KOG0472|consen  254 LLVLDLRDNKLKE-VPD--EICLLRSLERLDLSNNDISSLPY  292 (565)
T ss_pred             ceeeecccccccc-Cch--HHHHhhhhhhhcccCCccccCCc
Confidence            6666666666663 555  55566666666666666666664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.04  E-value=4e-11  Score=106.21  Aligned_cols=112  Identities=34%  Similarity=0.394  Sum_probs=92.0

Q ss_pred             CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHh
Q 045099           89 LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG  168 (217)
Q Consensus        89 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~  168 (217)
                      .+.+..+.+|+.|+|++|++...+..    .+.++..|+.|+|++|+++ .+|..+..+..|++|...+|++. .+|  .
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP--e  447 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP--E  447 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech--h
Confidence            34567889999999999999876655    7888999999999999998 68888999999999999999997 566  4


Q ss_pred             hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCC
Q 045099          169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY  210 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~  210 (217)
                      +..++.|+.+|++.|+++-..-.  .....++|++|||++|.
T Consensus       448 ~~~l~qL~~lDlS~N~L~~~~l~--~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLSEVTLP--EALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhcCcceEEecccchhhhhhhh--hhCCCcccceeeccCCc
Confidence            88999999999999998854322  22233899999999996

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=2.4e-10  Score=70.28  Aligned_cols=60  Identities=38%  Similarity=0.452  Sum_probs=33.4

Q ss_pred             CCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCC
Q 045099          149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYG  211 (217)
Q Consensus       149 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l  211 (217)
                      +|++|++++|+++ .+|...|..+++|++|++++|.++...+.  .+..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~--~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPD--AFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETT--TTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHH--HHcCCCCCCEEeCcCCcC
Confidence            4555555555555 34444555556666666666665554444  555566666666665543

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.01  E-value=2.7e-10  Score=92.75  Aligned_cols=115  Identities=30%  Similarity=0.314  Sum_probs=60.9

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCccch---Hh
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGSRTK---QG  168 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~---~~  168 (217)
                      ++|+.|++++|.+++.....+...+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++....   ..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            56666666666666433222222444555666666666666532    222334445666666666666532111   13


Q ss_pred             hcCCCCCCEEEccCCcCccccccccccc-----CCCCCCEEeccCCCCC
Q 045099          169 LANLRYLQVLDLSGNPITGRFIARLGLS-----SLRNLKRLDLSNNYGF  212 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~-----~l~~L~~L~l~~N~l~  212 (217)
                      +..+++|++|++++|.+++....  .+.     ..+.|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~--~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAA--ALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHH--HHHHHHhccCCCceEEEccCCCCC
Confidence            44556677777776666642111  111     1356677777766664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.00  E-value=2.5e-10  Score=70.25  Aligned_cols=59  Identities=36%  Similarity=0.479  Sum_probs=28.2

Q ss_pred             CCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCc
Q 045099          125 QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP  184 (217)
Q Consensus       125 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~  184 (217)
                      +|++|++++|+++...+..|..+++|++|++++|.++ .+++..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence            3444555555554333334444555555555555554 2333345555555555555554

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.96  E-value=4.5e-08  Score=88.08  Aligned_cols=102  Identities=27%  Similarity=0.312  Sum_probs=71.0

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      +.|+.|++++|.++..+.     .+  .++|++|++++|.++ .+|..+.  .+|+.|++++|+++ .+|. .+.  .+|
T Consensus       199 ~~L~~L~Ls~N~LtsLP~-----~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~-~l~--s~L  264 (754)
T PRK15370        199 EQITTLILDNNELKSLPE-----NL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPE-RLP--SAL  264 (754)
T ss_pred             cCCcEEEecCCCCCcCCh-----hh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCCh-hHh--CCC
Confidence            357788888888876543     22  247888888888887 4565443  46888888888887 5665 332  478


Q ss_pred             CEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       176 ~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +.|++++|+++. +|.  .+.  ++|+.|++++|+|+++|.
T Consensus       265 ~~L~Ls~N~L~~-LP~--~l~--~sL~~L~Ls~N~Lt~LP~  300 (754)
T PRK15370        265 QSLDLFHNKISC-LPE--NLP--EELRYLSVYDNSIRTLPA  300 (754)
T ss_pred             CEEECcCCccCc-ccc--ccC--CCCcEEECCCCccccCcc
Confidence            888888888874 565  332  478888888888877764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.96  E-value=5.8e-10  Score=90.82  Aligned_cols=121  Identities=27%  Similarity=0.248  Sum_probs=87.2

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccc----hHHhhcCCCCCEEEccCccccCccchH
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI----LSYLNTLTSLTTLILCDNSIEGSRTKQ  167 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p~~  167 (217)
                      +..+++|++|++++|.+++.....+...+..+++|++|++++|.+++..    ...+..+++|++|++++|.+++.....
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            4456789999999999986433222224566789999999999997543    334566788999999999998522221


Q ss_pred             hhc----CCCCCCEEEccCCcCcc----cccccccccCCCCCCEEeccCCCCCCC
Q 045099          168 GLA----NLRYLQVLDLSGNPITG----RFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       168 ~~~----~l~~L~~L~L~~n~l~~----~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      ...    ..+.|++|++++|.+++    .+..  .+..+++|+++++++|.++..
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~--~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAE--VLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHH--HHhcCCCccEEECCCCCCcHH
Confidence            111    24799999999999873    2333  455678999999999998753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.93  E-value=1.4e-09  Score=61.85  Aligned_cols=43  Identities=28%  Similarity=0.601  Sum_probs=30.0

Q ss_pred             CHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCccccceEEc
Q 045099            8 LEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCN   55 (217)
Q Consensus         8 ~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~w~gv~c~   55 (217)
                      ++.|++||++||+++..++     ...+.+|......++|.|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~-----~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDP-----SGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC------CCCTT--TT--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhccccc-----CcccccCCCcCCCCCeeeccEEeC
Confidence            3679999999999998643     368999997433699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.88  E-value=5.2e-09  Score=93.92  Aligned_cols=107  Identities=22%  Similarity=0.194  Sum_probs=67.3

Q ss_pred             CccEEECCCCcCCCccCcc--h------hhccc----CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCcc
Q 045099           97 ELQSLDLSENWFGGVSESK--A------YNSSG----NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSR  164 (217)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~--~------~~~~~----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  164 (217)
                      +|++|++++|+++..++..  +      .+.+.    ...+|+.|++++|.|++ +|..   .++|+.|++++|++++ +
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-I  417 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-L  417 (788)
T ss_pred             ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-C
Confidence            6778888888877643210  0      00000    11245666666666653 3322   2456777777777763 5


Q ss_pred             chHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          165 TKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       165 p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      |. .   ..+|+.|++++|+++ .+|.  .+.++++|+.|+|++|+|++..
T Consensus       418 P~-l---~~~L~~L~Ls~NqLt-~LP~--sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        418 PM-L---PSGLLSLSVYRNQLT-RLPE--SLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             Cc-c---hhhhhhhhhccCccc-ccCh--HHhhccCCCeEECCCCCCCchH
Confidence            53 2   245677888888887 4777  7888999999999999998753

>PLN03210 Resistant to P

Probab=98.84  E-value=2.8e-08  Score=94.02  Aligned_cols=114  Identities=22%  Similarity=0.139  Sum_probs=85.1

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      .+..+++|++|+++++.....+|     .+..+++|++|+|++|.....+|..+..+++|+.|++++|..-..+|. .+ 
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-  701 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-  701 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-
Confidence            34567888888888876555555     567788899999988776667888888888999999988754446665 23 


Q ss_pred             CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ++++|++|++++|.....+|.  .   .++|+.|++++|.+..+|+
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~--~---~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPD--I---STNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             CCCCCCEEeCCCCCCcccccc--c---cCCcCeeecCCCccccccc
Confidence            678888888888876655664  2   4577888888888877764

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.81  E-value=1e-08  Score=92.16  Aligned_cols=103  Identities=22%  Similarity=0.278  Sum_probs=61.9

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      .+|++|++++|.++.. |.    .+  ..+|+.|+|++|.+. .+|..+.  .+|+.|++++|+++ .+|. .+.  .+|
T Consensus       220 ~nL~~L~Ls~N~LtsL-P~----~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~-~l~--~sL  285 (754)
T PRK15370        220 GNIKTLYANSNQLTSI-PA----TL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPE-NLP--EEL  285 (754)
T ss_pred             cCCCEEECCCCccccC-Ch----hh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccc-ccC--CCC
Confidence            4788888888888754 32    22  235777777777776 4555443  35777777777776 3554 222  466


Q ss_pred             CEEEccCCcCccccccccccc-------------------CCCCCCEEeccCCCCCCCC
Q 045099          176 QVLDLSGNPITGRFIARLGLS-------------------SLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       176 ~~L~L~~n~l~~~~p~~~~l~-------------------~l~~L~~L~l~~N~l~~~p  215 (217)
                      ++|++++|+++. +|.  .+.                   -.++|+.|++++|.++++|
T Consensus       286 ~~L~Ls~N~Lt~-LP~--~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP  341 (754)
T PRK15370        286 RYLSVYDNSIRT-LPA--HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLP  341 (754)
T ss_pred             cEEECCCCcccc-Ccc--cchhhHHHHHhcCCccccCCccccccceeccccCCccccCC
Confidence            777777776664 332  111                   1245666677777666665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.80  E-value=2.7e-08  Score=89.39  Aligned_cols=17  Identities=29%  Similarity=0.407  Sum_probs=12.8

Q ss_pred             CCCccEEECCCCcCCCc
Q 045099           95 FQELQSLDLSENWFGGV  111 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~  111 (217)
                      .++|++|++++|.++..
T Consensus       241 p~~Lk~LdLs~N~LtsL  257 (788)
T PRK15387        241 PPELRTLEVSGNQLTSL  257 (788)
T ss_pred             CCCCcEEEecCCccCcc
Confidence            46788888888888765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.80  E-value=3.3e-10  Score=100.52  Aligned_cols=110  Identities=35%  Similarity=0.358  Sum_probs=94.9

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY  174 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~  174 (217)
                      ++.|+.|.+.+|.++...-+    .+.++++|+.|+|++|++.......+.++..|+.|+|++|+++ .+|. .+.++..
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~  431 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGR  431 (1081)
T ss_pred             hHHHHHHHHhcCcccccchh----hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhh
Confidence            56688899999999987766    7889999999999999998433456788999999999999998 6886 7899999


Q ss_pred             CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      |++|...+|++.. +|   .+..++.|+.+|++.|+++.+
T Consensus       432 L~tL~ahsN~l~~-fP---e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLS-FP---ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             hHHHhhcCCceee-ch---hhhhcCcceEEecccchhhhh
Confidence            9999999999885 66   578899999999999998754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.79  E-value=2.9e-10  Score=92.45  Aligned_cols=132  Identities=26%  Similarity=0.295  Sum_probs=93.7

Q ss_pred             cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccC-CCCCc
Q 045099           60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGN-NRLND  138 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~  138 (217)
                      ..+.|+|..|.+.             .++...|..+++|+.|||+.|.|+.+.|.    +|.+++.|..|-+.+ |+|+.
T Consensus        68 ~tveirLdqN~I~-------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-------------SIPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             cceEEEeccCCcc-------------cCChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhh
Confidence            4556666665554             56667778888888888888888877776    777777777666554 77875


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYG  211 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l  211 (217)
                      ..-..|.++.+|+.|.+.-|++. -++...+..++++..|.+.+|.+...-..  .+..+..++.+.+..|.+
T Consensus       131 l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~--tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKG--TFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccc--cccchhccchHhhhcCcc
Confidence            54556777888888888777776 45555777888888888888877753333  566677777887777763

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.73  E-value=4.8e-10  Score=94.99  Aligned_cols=114  Identities=29%  Similarity=0.354  Sum_probs=68.2

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccC--------
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEG--------  162 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--------  162 (217)
                      .+..+..|++|+|+.|++...+.     .++.+ -|+.|-+++|+++ .+|..++.+.+|..||.+.|.+..        
T Consensus       116 ~i~~L~~lt~l~ls~NqlS~lp~-----~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l  188 (722)
T KOG0532|consen  116 AICNLEALTFLDLSSNQLSHLPD-----GLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL  188 (722)
T ss_pred             hhhhhhHHHHhhhccchhhcCCh-----hhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence            44556666667777666665544     22222 2455555555554 344444444444444444444431        


Q ss_pred             --------------ccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          163 --------------SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       163 --------------~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                                    .+|+ ++. .-.|..||++.|+++. +|.  .|.+++.|++|-|.+|.+.+.|.
T Consensus       189 ~slr~l~vrRn~l~~lp~-El~-~LpLi~lDfScNkis~-iPv--~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLEDLPE-ELC-SLPLIRLDFSCNKISY-LPV--DFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             HHHHHHHHhhhhhhhCCH-HHh-CCceeeeecccCceee-cch--hhhhhhhheeeeeccCCCCCChH
Confidence                          2444 344 3456778888888874 677  78888888888888888887764

>PLN03210 Resistant to P

Probab=98.66  E-value=2.9e-07  Score=87.21  Aligned_cols=107  Identities=24%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      ...+|++|++.+|.+.....     .+..+++|+.|+|+++.....+|. ++.+++|+.|++++|.....+|. .+.+++
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~-----~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~  681 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWD-----GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLN  681 (1153)
T ss_pred             CccCCcEEECcCcccccccc-----ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccC
Confidence            35789999999998876433     567899999999998765445664 77889999999999876567886 788999


Q ss_pred             CCCEEEccCCcCcccccccccccCCCCCCEEeccCCC
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY  210 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~  210 (217)
                      +|+.|++++|.....+|.  .+ ++++|+.|++++|.
T Consensus       682 ~L~~L~L~~c~~L~~Lp~--~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        682 KLEDLDMSRCENLEILPT--GI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCEEeCCCCCCcCccCC--cC-CCCCCCEEeCCCCC
Confidence            999999999765556776  44 78999999999875

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.63  E-value=5.7e-09  Score=82.61  Aligned_cols=107  Identities=33%  Similarity=0.351  Sum_probs=86.2

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      .+..|+++||+.|.|+....     +..-.|.++.|+++.|.+..  ...+..+++|+.||+++|.++ .+.. +-..+-
T Consensus       282 TWq~LtelDLS~N~I~~iDE-----SvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLG  352 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDE-----SVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVG-WHLKLG  352 (490)
T ss_pred             hHhhhhhccccccchhhhhh-----hhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhh-hHhhhc
Confidence            35679999999999876543     56667899999999999973  334888999999999999998 3443 556778


Q ss_pred             CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                      +.+.|.|++|.+.+.  .  .++.+-+|..||+++|++..
T Consensus       353 NIKtL~La~N~iE~L--S--GL~KLYSLvnLDl~~N~Ie~  388 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETL--S--GLRKLYSLVNLDLSSNQIEE  388 (490)
T ss_pred             CEeeeehhhhhHhhh--h--hhHhhhhheeccccccchhh
Confidence            899999999988852  2  67889999999999998754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.55  E-value=1.3e-08  Score=86.49  Aligned_cols=88  Identities=30%  Similarity=0.371  Sum_probs=70.7

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      .++.+..|..||.+.|.+...++     .++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++ .+|. .|.
T Consensus       161 ~ig~~~tl~~ld~s~nei~slps-----ql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv-~fr  231 (722)
T KOG0532|consen  161 EIGLLPTLAHLDVSKNEIQSLPS-----QLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPV-DFR  231 (722)
T ss_pred             ccccchhHHHhhhhhhhhhhchH-----HhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecch-hhh
Confidence            34456667777777777766554     6778888888888888887 467777744 4889999999998 6898 899


Q ss_pred             CCCCCCEEEccCCcCcc
Q 045099          171 NLRYLQVLDLSGNPITG  187 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~  187 (217)
                      +|+.|++|-|.+|.++.
T Consensus       232 ~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhheeeeeccCCCCC
Confidence            99999999999999996

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.52  E-value=5.3e-08  Score=81.92  Aligned_cols=112  Identities=32%  Similarity=0.420  Sum_probs=54.9

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|+.|+++.|.++...+     .....+.|+.|++++|++. .+|..+.....|+++.+++|.+. .++. .+..
T Consensus       159 ~~~l~~L~~L~l~~N~l~~l~~-----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~  230 (394)
T COG4886         159 LRNLPNLKNLDLSFNDLSDLPK-----LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS-SLSN  230 (394)
T ss_pred             hhccccccccccCCchhhhhhh-----hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch-hhhh
Confidence            4556666666666666665544     2225566666666666665 34444334444555555555322 1111 2333


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +.++..+.+.+|++.. ++.  .++.++.++.|++++|.++.+
T Consensus       231 ~~~l~~l~l~~n~~~~-~~~--~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         231 LKNLSGLELSNNKLED-LPE--SIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             cccccccccCCceeee-ccc--hhccccccceecccccccccc
Confidence            3344444444444332 122  344444555555555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=3.6e-07  Score=52.03  Aligned_cols=37  Identities=41%  Similarity=0.561  Sum_probs=22.7

Q ss_pred             CCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc
Q 045099          149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG  187 (217)
Q Consensus       149 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  187 (217)
                      +|++|++++|+|+ .+|+ .+.++++|+.|++++|++++
T Consensus         2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCCC
Confidence            5666777777776 3554 46666777777777776664

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.34  E-value=1e-06  Score=66.03  Aligned_cols=107  Identities=30%  Similarity=0.363  Sum_probs=81.1

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      .+...+||++|.+-...      .|..++.|.+|.+++|+|+...|.--..++.|..|.+.+|.|........+..+++|
T Consensus        42 d~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             cccceecccccchhhcc------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            45678899999887654      678899999999999999976666555678899999999998732222236788999


Q ss_pred             CEEEccCCcCccccc-ccccccCCCCCCEEeccC
Q 045099          176 QVLDLSGNPITGRFI-ARLGLSSLRNLKRLDLSN  208 (217)
Q Consensus       176 ~~L~L~~n~l~~~~p-~~~~l~~l~~L~~L~l~~  208 (217)
                      ++|.+-+|+++..-- ..+.+..+|+|+.||++.
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            999999998885211 012567889999999764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=7.8e-08  Score=79.41  Aligned_cols=119  Identities=24%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchH-HhhcCCC---------------------
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS-YLNTLTS---------------------  149 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~---------------------  149 (217)
                      ..++++|+.|+++.|.+.-.......   ..+++|+.|.++.|.++-.... ....+|+                     
T Consensus       168 ~eqLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i  244 (505)
T KOG3207|consen  168 AEQLPSLENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI  244 (505)
T ss_pred             HHhcccchhcccccccccCCccccch---hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh
Confidence            35667777777777766654433211   1345566666666666522221 1223344                     


Q ss_pred             ---CCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc-cccccc-----ccCCCCCCEEeccCCCCCCCC
Q 045099          150 ---LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR-FIARLG-----LSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       150 ---L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~-----l~~l~~L~~L~l~~N~l~~~p  215 (217)
                         |+.|||++|++...--....+.++.|+.|+++.+.+... +|+  .     ...+++|++|++..|++...+
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d--~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPD--VESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCC--ccchhhhcccccceeeecccCcccccc
Confidence               444555555443211011244555666666665555532 222  1     245677888888888775543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.5e-07  Score=77.85  Aligned_cols=114  Identities=29%  Similarity=0.272  Sum_probs=75.4

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccc-hHHhhcCCCCCEEEccCccccCc-cchH----
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI-LSYLNTLTSLTTLILCDNSIEGS-RTKQ----  167 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~-~p~~----  167 (217)
                      .++.|+.|++..|........    ...-+..|++|+|++|.+-... -...+.++.|..|.++.+.+... +|+.    
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             hCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence            356666666666642221111    3345778999999998875321 24567889999999999998742 2221    


Q ss_pred             hhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          168 GLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       168 ~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      ....+++|++|++..|++... +.--.+..+++|++|.+..|+|+
T Consensus       296 kt~~f~kL~~L~i~~N~I~~w-~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIRDW-RSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhcccccceeeecccCccccc-cccchhhccchhhhhhccccccc
Confidence            135678999999999998652 21114556778888888888775

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=2e-08  Score=87.70  Aligned_cols=103  Identities=30%  Similarity=0.358  Sum_probs=53.7

Q ss_pred             CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099           97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ  176 (217)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  176 (217)
                      .|.+.+.++|.+.....     ++.-++.|+.|+|++|++...  ..+..+++|++||+++|.++ .+|......+. |.
T Consensus       165 ~L~~a~fsyN~L~~mD~-----SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDE-----SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQ  235 (1096)
T ss_pred             hHhhhhcchhhHHhHHH-----HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-he
Confidence            35555555555544322     445556666666666666532  25555666666666666665 34431222222 56


Q ss_pred             EEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       177 ~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      .|++++|.++..  .  .+.++.+|+.||+++|-+.
T Consensus       236 ~L~lrnN~l~tL--~--gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  236 LLNLRNNALTTL--R--GIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             eeeecccHHHhh--h--hHHhhhhhhccchhHhhhh
Confidence            666666655531  1  3455555666666665443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.30  E-value=3.7e-07  Score=76.86  Aligned_cols=104  Identities=40%  Similarity=0.506  Sum_probs=54.5

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCC-CCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLK-QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      ++.++.|++.+|.++...+     ....+. +|+.|++++|.+. .+|..+..++.|+.|+++.|+++ .+|. .....+
T Consensus       115 ~~~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~-~~~~~~  186 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPK-LLSNLS  186 (394)
T ss_pred             ccceeEEecCCcccccCcc-----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhh-hhhhhh
Confidence            3455666666666655544     233332 5666666666665 34444555666666666666665 3443 222455


Q ss_pred             CCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N  209 (217)
                      .|+.|++++|+++. +|.  .......|+.+.+++|
T Consensus       187 ~L~~L~ls~N~i~~-l~~--~~~~~~~L~~l~~~~N  219 (394)
T COG4886         187 NLNNLDLSGNKISD-LPP--EIELLSALEELDLSNN  219 (394)
T ss_pred             hhhheeccCCcccc-Cch--hhhhhhhhhhhhhcCC
Confidence            56666666666554 333  2233444555555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=1.1e-08  Score=89.20  Aligned_cols=109  Identities=32%  Similarity=0.291  Sum_probs=85.6

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchH-HhhcCCCCCEEEccCccccCccchHhhc
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS-YLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      +.-++.|+.|+|+.|+++...      .+..+++|++|||+.|.+. .+|. ....+ +|+.|.+.+|.++. +-  .+.
T Consensus       183 Lqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t-L~--gie  251 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT-LR--GIE  251 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh-hh--hHH
Confidence            344688999999999998754      6788999999999999998 3443 22233 49999999999983 43  478


Q ss_pred             CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      ++.+|+.||++.|-+.+. ..-..++.+..|+.|.|.+|.+.
T Consensus       252 ~LksL~~LDlsyNll~~h-seL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEH-SELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhhccchhHhhhhcc-hhhhHHHHHHHHHHHhhcCCccc
Confidence            899999999999988863 21114567889999999999874

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=2e-06  Score=48.93  Aligned_cols=37  Identities=38%  Similarity=0.548  Sum_probs=23.8

Q ss_pred             CCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcccc
Q 045099          124 KQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIE  161 (217)
Q Consensus       124 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  161 (217)
                      ++|++|++++|+|+ .+|+.++.+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35677777777776 35555677777777777777776

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.22  E-value=7.6e-07  Score=81.55  Aligned_cols=107  Identities=27%  Similarity=0.275  Sum_probs=67.3

Q ss_pred             CCCccEEECCCCc--CCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099           95 FQELQSLDLSENW--FGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL  172 (217)
Q Consensus        95 l~~L~~L~l~~n~--l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l  172 (217)
                      .+.|++|-+..|.  +......    .|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..++ .+|. .+.++
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~L  617 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNL  617 (889)
T ss_pred             CCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHH
Confidence            3456666666664  3333322    4666777777777766655567777777777777777777776 4665 56777


Q ss_pred             CCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099          173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       173 ~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N  209 (217)
                      ..|.+|++..+.....+|.  ....+++|++|.+...
T Consensus       618 k~L~~Lnl~~~~~l~~~~~--i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPG--ILLELQSLRVLRLPRS  652 (889)
T ss_pred             Hhhheeccccccccccccc--hhhhcccccEEEeecc
Confidence            7777777776654444444  4445677777666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.16  E-value=1.6e-07  Score=66.37  Aligned_cols=87  Identities=25%  Similarity=0.295  Sum_probs=60.6

Q ss_pred             CCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099           93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL  172 (217)
Q Consensus        93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l  172 (217)
                      ....+|+..++++|.+...++.    .-..++.+++|++++|.++ .+|..+..++.|+.|+++.|.+. ..|. .+..+
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~L  122 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKK----FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAPL  122 (177)
T ss_pred             hCCceEEEEecccchhhhCCHH----Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHHH
Confidence            3445677778888887765553    2234567777888888887 46777778888888888888876 3454 55667


Q ss_pred             CCCCEEEccCCcCc
Q 045099          173 RYLQVLDLSGNPIT  186 (217)
Q Consensus       173 ~~L~~L~L~~n~l~  186 (217)
                      .++-.|+..+|.+.
T Consensus       123 ~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  123 IKLDMLDSPENARA  136 (177)
T ss_pred             HhHHHhcCCCCccc
Confidence            77777777777665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.15  E-value=5.6e-07  Score=76.34  Aligned_cols=109  Identities=34%  Similarity=0.401  Sum_probs=70.0

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+..|+.|++.+|.+.....     .+..+++|++|++++|.|+..  ..+..++.|+.|++++|.++. +.  .+..
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~--~~~~  160 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-IS--GLES  160 (414)
T ss_pred             cccccceeeeeccccchhhccc-----chhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-cc--CCcc
Confidence            5566777777777777776543     256677777777777777642  234455667777777777763 33  3555


Q ss_pred             CCCCCEEEccCCcCccccccccc-ccCCCCCCEEeccCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLG-LSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~-l~~l~~L~~L~l~~N~l~~  213 (217)
                      +..|+.+++++|++...-+   . ...+.+++.+.+.+|.+..
T Consensus       161 l~~L~~l~l~~n~i~~ie~---~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIEN---DELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             chhhhcccCCcchhhhhhh---hhhhhccchHHHhccCCchhc
Confidence            6777777777777775322   1 2556667777777766543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=6.4e-07  Score=76.01  Aligned_cols=111  Identities=35%  Similarity=0.474  Sum_probs=89.6

Q ss_pred             CCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099           93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL  172 (217)
Q Consensus        93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l  172 (217)
                      ..+..++.+.+..|.+.....     .+..+.+|..|++.+|.|.. +...+..+++|++|++++|.|+. +.  .+..+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~-i~--~l~~l  139 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK-LE--GLSTL  139 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhh-cccchhhhhcchheecccccccc-cc--chhhc
Confidence            356777888899998877332     57889999999999999984 33337789999999999999985 43  36777


Q ss_pred             CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       173 ~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +.|+.|++.+|.++. +.   .+..+..|+.+++++|.+..+.+
T Consensus       140 ~~L~~L~l~~N~i~~-~~---~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  140 TLLKELNLSGNLISD-IS---GLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             cchhhheeccCcchh-cc---CCccchhhhcccCCcchhhhhhh
Confidence            889999999999996 33   45668999999999999887654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.10  E-value=1.3e-06  Score=70.36  Aligned_cols=90  Identities=26%  Similarity=0.350  Sum_probs=56.4

Q ss_pred             cCCCCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCc---cchHhhcCCCCCCEEEccCCcCccc----c
Q 045099          121 GNLKQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGS---RTKQGLANLRYLQVLDLSGNPITGR----F  189 (217)
Q Consensus       121 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~---~p~~~~~~l~~L~~L~L~~n~l~~~----~  189 (217)
                      ..-+.|+++...+|++...    +...+...+.|+.+.++.|.|...   .....+..+++|+.|||.+|-|+-.    +
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            4455677777777776532    223445567777777777776521   1123567788888888888877731    2


Q ss_pred             cccccccCCCCCCEEeccCCCCC
Q 045099          190 IARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       190 p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      ..  .+..+++|+.|+++++.+.
T Consensus       234 ak--aL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  234 AK--ALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HH--Hhcccchheeecccccccc
Confidence            22  4556777888888777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=2.6e-07  Score=65.27  Aligned_cols=113  Identities=20%  Similarity=0.190  Sum_probs=86.2

Q ss_pred             CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099           58 AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN  137 (217)
Q Consensus        58 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  137 (217)
                      .-+++.+++++|.+.             .++......++.++.|++.+|.+...+.     ++..++.|+.|+++.|.+.
T Consensus        52 ~~el~~i~ls~N~fk-------------~fp~kft~kf~t~t~lNl~~neisdvPe-----E~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-------------KFPKKFTIKFPTATTLNLANNEISDVPE-----ELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             CceEEEEecccchhh-------------hCCHHHhhccchhhhhhcchhhhhhchH-----HHhhhHHhhhcccccCccc
Confidence            357888999998876             3334445567789999999999988654     7889999999999999998


Q ss_pred             ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccc
Q 045099          138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIA  191 (217)
Q Consensus       138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  191 (217)
                       ..|..+..+.+|..|+...|.+. ++|.. +-.....-..+++++.+.+.-+.
T Consensus       114 -~~p~vi~~L~~l~~Lds~~na~~-eid~d-l~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  114 -AEPRVIAPLIKLDMLDSPENARA-EIDVD-LFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             -cchHHHHHHHhHHHhcCCCCccc-cCcHH-HhccccHHHHHhcCCcccccCcc
Confidence             67887778999999999999987 67763 33333444445677777765554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.88  E-value=5.5e-06  Score=64.41  Aligned_cols=85  Identities=27%  Similarity=0.343  Sum_probs=45.4

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCC--CCCccchHHhhcCCCCCEEEccCccccC--ccchHhhc
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN--RLNDSILSYLNTLTSLTTLILCDNSIEG--SRTKQGLA  170 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~  170 (217)
                      +..|+.|.+.+..++...      .+..+++|++|.++.|  ++++.++.....+++|+++.+++|+++.  .++  .+.
T Consensus        42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~  113 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLK  113 (260)
T ss_pred             ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhh
Confidence            344455555555554433      3455666666666666  4444444434444666666666666652  122  144


Q ss_pred             CCCCCCEEEccCCcCcc
Q 045099          171 NLRYLQVLDLSGNPITG  187 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~  187 (217)
                      .+.+|..|++.+|..+.
T Consensus       114 ~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhcchhhhhcccCCccc
Confidence            45556666666665553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.86  E-value=7.3e-06  Score=75.27  Aligned_cols=113  Identities=27%  Similarity=0.302  Sum_probs=86.7

Q ss_pred             ecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch
Q 045099           87 LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK  166 (217)
Q Consensus        87 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~  166 (217)
                      +....|..++.|.+|||++|.=-+..|.    .++.+-+|++|+++++.++ .+|..+..+.+|.+|++..+.....+|.
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~  636 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG  636 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc
Confidence            3344588899999999999877777777    8999999999999999999 7999999999999999999876544544


Q ss_pred             HhhcCCCCCCEEEccCCcCc--ccccccccccCCCCCCEEecc
Q 045099          167 QGLANLRYLQVLDLSGNPIT--GRFIARLGLSSLRNLKRLDLS  207 (217)
Q Consensus       167 ~~~~~l~~L~~L~L~~n~l~--~~~p~~~~l~~l~~L~~L~l~  207 (217)
                       ....+.+|++|.+......  ...-.  .+.++.+|+.+...
T Consensus       637 -i~~~L~~Lr~L~l~~s~~~~~~~~l~--el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  637 -ILLELQSLRVLRLPRSALSNDKLLLK--ELENLEHLENLSIT  676 (889)
T ss_pred             -hhhhcccccEEEeeccccccchhhHH--hhhcccchhhheee
Confidence             5667999999999765422  22222  34555566555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.69  E-value=4e-05  Score=62.02  Aligned_cols=114  Identities=25%  Similarity=0.313  Sum_probs=55.1

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCccch---Hh
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGSRTK---QG  168 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~---~~  168 (217)
                      +.|+.+.++.|.|.......++..+..+++|+.|||..|.++-.    +...+..+++|+.|++++|.+...-..   ..
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            44455555554444332222333455566666666666665421    122344455566666666655522111   01


Q ss_pred             h-cCCCCCCEEEccCCcCccc----ccccccccCCCCCCEEeccCCCC
Q 045099          169 L-ANLRYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLDLSNNYG  211 (217)
Q Consensus       169 ~-~~l~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~l~~N~l  211 (217)
                      + ...++|+.+.+.+|.++..    +..  .+...+.|..|+|++|.+
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~--~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAA--CMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHH--HHhcchhhHHhcCCcccc
Confidence            1 1245666666666665531    111  234456666666666666

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.64  E-value=7.6e-05  Score=56.23  Aligned_cols=104  Identities=25%  Similarity=0.252  Sum_probs=76.9

Q ss_pred             EEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccc
Q 045099           61 VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI  140 (217)
Q Consensus        61 v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  140 (217)
                      ...+||+.+.+.               ....|..++.|..|.+.+|+|+...|.    --..+++|+.|.|.+|.|....
T Consensus        44 ~d~iDLtdNdl~---------------~l~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~  104 (233)
T KOG1644|consen   44 FDAIDLTDNDLR---------------KLDNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELG  104 (233)
T ss_pred             cceecccccchh---------------hcccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhh
Confidence            445677776655               234577889999999999999998874    3345788999999999986321


Q ss_pred             -hHHhhcCCCCCEEEccCccccCc--cchHhhcCCCCCCEEEccCC
Q 045099          141 -LSYLNTLTSLTTLILCDNSIEGS--RTKQGLANLRYLQVLDLSGN  183 (217)
Q Consensus       141 -p~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~~l~~L~~L~L~~n  183 (217)
                       ...+..+++|++|.+-+|.++..  .-...+..+++|+.||++.-
T Consensus       105 dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  105 DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence             23466789999999999988731  11124678899999998654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=0.00014  Score=65.37  Aligned_cols=112  Identities=23%  Similarity=0.253  Sum_probs=60.1

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY  174 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~  174 (217)
                      +|.|+.|.+.+-.+....   +..-..++|+|..||+++.+++..  ..++.+++|+.|.+.+=.+...-.-..+.++++
T Consensus       147 LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~  221 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK  221 (699)
T ss_pred             CcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence            566666666655554321   111334566677777777666532  456666666666665544442111124556777


Q ss_pred             CCEEEccCCcCcccc--cccc--cccCCCCCCEEeccCCCC
Q 045099          175 LQVLDLSGNPITGRF--IARL--GLSSLRNLKRLDLSNNYG  211 (217)
Q Consensus       175 L~~L~L~~n~l~~~~--p~~~--~l~~l~~L~~L~l~~N~l  211 (217)
                      |++||+|........  ...+  .-..+|+|+.||.+++.+
T Consensus       222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            777777766544311  1000  123467777777776544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=4.5e-05  Score=60.78  Aligned_cols=87  Identities=30%  Similarity=0.316  Sum_probs=48.8

Q ss_pred             CCCCCEEEccCCCCCcc--chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCC
Q 045099          123 LKQLKILNLGNNRLNDS--ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRN  200 (217)
Q Consensus       123 l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~  200 (217)
                      .+.++.+||.+|.|++.  +-.-+..+|.|+.|+++.|.+...|.. .-....+|+.|-|.+..+...-.. ..+..+|.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~~-s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQST-SSLDDLPK  147 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChhhhh-hhhhcchh
Confidence            45566777777777642  222345567777777777776644332 113445667777766655432111 04456666


Q ss_pred             CCEEeccCCCC
Q 045099          201 LKRLDLSNNYG  211 (217)
Q Consensus       201 L~~L~l~~N~l  211 (217)
                      +++|+++.|++
T Consensus       148 vtelHmS~N~~  158 (418)
T KOG2982|consen  148 VTELHMSDNSL  158 (418)
T ss_pred             hhhhhhccchh
Confidence            66676666643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.47  E-value=0.00018  Score=56.80  Aligned_cols=121  Identities=27%  Similarity=0.249  Sum_probs=73.8

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc----chHHh---------hcCCCCCEEEccC
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS----ILSYL---------NTLTSLTTLILCD  157 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~---------~~l~~L~~L~l~~  157 (217)
                      .+..|++|+.++||+|.|....|+.+...+.+-..|.+|.+++|.+.-.    +-..+         ..-|.|+.....+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            4567899999999999998888876666678888999999999987522    22111         2347788888888


Q ss_pred             ccccCccchH----hhcCCCCCCEEEccCCcCcccccc---cccccCCCCCCEEeccCCCCC
Q 045099          158 NSIEGSRTKQ----GLANLRYLQVLDLSGNPITGRFIA---RLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       158 n~l~~~~p~~----~~~~l~~L~~L~L~~n~l~~~~p~---~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      |++.. .+..    .+..-..|+.+-+..|.+.-.-..   .+.+..+.+|+.|||++|-|+
T Consensus       167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            88762 2211    111113555555555554421000   002234556666666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.31  E-value=0.00015  Score=56.48  Aligned_cols=90  Identities=31%  Similarity=0.408  Sum_probs=62.9

Q ss_pred             cCCCCCCCCCccEEECCCC--cCCCccCcchhhcccCCCCCCEEEccCCCCCcc-chHHhhcCCCCCEEEccCccccCcc
Q 045099           88 DLSLFPPFQELQSLDLSEN--WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS-ILSYLNTLTSLTTLILCDNSIEGSR  164 (217)
Q Consensus        88 ~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~  164 (217)
                      ....+..+++|+.|.++.|  ++.+..+.    -...+++|++|++++|++... ....+..+.+|..|++..|..+..-
T Consensus        57 t~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~  132 (260)
T KOG2739|consen   57 TLTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD  132 (260)
T ss_pred             ecccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence            3455677889999999999  66655544    345669999999999999731 1123455677889999998876421


Q ss_pred             --chHhhcCCCCCCEEEcc
Q 045099          165 --TKQGLANLRYLQVLDLS  181 (217)
Q Consensus       165 --p~~~~~~l~~L~~L~L~  181 (217)
                        -...+.-+++|++|+-.
T Consensus       133 dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  133 DYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             cHHHHHHHHhhhhcccccc
Confidence              11245667888877643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=8.7e-06  Score=64.16  Aligned_cols=83  Identities=30%  Similarity=0.302  Sum_probs=51.8

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccch-HHhhcCCCCCEEEccCccccCccch---
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSIL-SYLNTLTSLTTLILCDNSIEGSRTK---  166 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~---  166 (217)
                      ....|+.|++|.|+-|.|+...|      +..+++|++|+|..|.|.+... .-+.++++|+.|+|..|...|.-+.   
T Consensus        36 ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence            34567777777777777776653      4567777777777777764321 2346677777777777766554332   


Q ss_pred             -HhhcCCCCCCEEE
Q 045099          167 -QGLANLRYLQVLD  179 (217)
Q Consensus       167 -~~~~~l~~L~~L~  179 (217)
                       ..+.-+++|+.||
T Consensus       110 ~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  110 RKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHcccchhcc
Confidence             1244456666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.24  E-value=0.0014  Score=45.83  Aligned_cols=107  Identities=22%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099           90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL  169 (217)
Q Consensus        90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~  169 (217)
                      ..|..+.+|+.+.+.. .+......    .|..+++|+.+.+..+ +.......+..+++++.+.+.. .+. .++...+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F   77 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAF   77 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccc
Confidence            3455555666666553 34433333    4555556666666553 4322233455555566666644 322 2333345


Q ss_pred             cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccC
Q 045099          170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN  208 (217)
Q Consensus       170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~  208 (217)
                      ..+++|+.+.+..+ +......  .+.++ .|+.+.+..
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~--~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSS--SFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTT--TTTT--T--EEE-TT
T ss_pred             cccccccccccCcc-ccEEchh--hhcCC-CceEEEECC
Confidence            55666666666544 3322222  44444 566665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=1.6e-05  Score=62.77  Aligned_cols=103  Identities=30%  Similarity=0.354  Sum_probs=67.4

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY  174 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~  174 (217)
                      +.+.+.|++.++.++.+.      ....++.|+.|.|+-|+|+.  ...+..++.|++|.|..|.|.+.-...-+.++++
T Consensus        18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccHHH------HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            455667777777776643      33567888888888888874  2345677788888888888764211123567778


Q ss_pred             CCEEEccCCcCcccccccc---cccCCCCCCEEe
Q 045099          175 LQVLDLSGNPITGRFIARL---GLSSLRNLKRLD  205 (217)
Q Consensus       175 L~~L~L~~n~l~~~~p~~~---~l~~l~~L~~L~  205 (217)
                      |+.|.|..|...+.-+..+   .+..+|+|+.||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888888887776444321   455677777765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.19  E-value=0.00025  Score=63.84  Aligned_cols=110  Identities=22%  Similarity=0.305  Sum_probs=79.1

Q ss_pred             CCccEEECCCCcCCCccCcchhhcc-cCCCCCCEEEccCCCCCc-cchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSS-GNLKQLKILNLGNNRLND-SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      .+|++|++++...-.....   ..+ ..+|.|+.|.+.+-.+.. ..-....++++|..||+++.+++. +  ..+++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~---~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWP---KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRLK  195 (699)
T ss_pred             HhhhhcCccccchhhccHH---HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhccc
Confidence            5688899988654322211   123 358999999999877753 233445678999999999999984 4  3588999


Q ss_pred             CCCEEEccCCcCcc-cccccccccCCCCCCEEeccCCCCCC
Q 045099          174 YLQVLDLSGNPITG-RFIARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       174 ~L~~L~L~~n~l~~-~~p~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                      +|+.|.+.+=.+.. ..-.  .+.++++|+.||+|......
T Consensus       196 nLq~L~mrnLe~e~~~~l~--~LF~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLI--DLFNLKKLRVLDISRDKNND  234 (699)
T ss_pred             cHHHHhccCCCCCchhhHH--HHhcccCCCeeecccccccc
Confidence            99999887766653 1122  56789999999999876543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=2.8e-05  Score=61.92  Aligned_cols=111  Identities=25%  Similarity=0.208  Sum_probs=72.5

Q ss_pred             CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCc-cccCccchHhhcCCCCC
Q 045099           97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN-SIEGSRTKQGLANLRYL  175 (217)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~l~~L  175 (217)
                      .|++|||++..++...-..   -+..+.+|+.|.+.++++.+.+...+..-..|+.++++.+ .++..-..-.+..++.|
T Consensus       186 Rlq~lDLS~s~it~stl~~---iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHG---ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHH---HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            4888888888776543211   3456778888888888888888888888888888888775 35422112235566777


Q ss_pred             CEEEccCCcCcccccc---------------------------cccccCCCCCCEEeccCCC
Q 045099          176 QVLDLSGNPITGRFIA---------------------------RLGLSSLRNLKRLDLSNNY  210 (217)
Q Consensus       176 ~~L~L~~n~l~~~~p~---------------------------~~~l~~l~~L~~L~l~~N~  210 (217)
                      ..|+++.+.++.....                           .....++++|.+|||++|.
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            7777776654421100                           0023568889999998863

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.00015  Score=57.91  Aligned_cols=86  Identities=28%  Similarity=0.339  Sum_probs=36.6

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      +.++.+||.+|.|+....  ++..+.++|.|++|+++.|.+...+-..-....+|+.|.|.+..+...-....+..+|.+
T Consensus        71 ~~v~elDL~~N~iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccchhccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            445555555555544321  112334455555555555555432211112334455555555444322111233344444


Q ss_pred             CEEEccCC
Q 045099          176 QVLDLSGN  183 (217)
Q Consensus       176 ~~L~L~~n  183 (217)
                      +.|+++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            55544444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.85  E-value=0.0036  Score=43.75  Aligned_cols=105  Identities=18%  Similarity=0.245  Sum_probs=58.5

Q ss_pred             eecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccc
Q 045099           86 ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT  165 (217)
Q Consensus        86 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  165 (217)
                      .+....|..+..|+.+.+..+ +......    .|..++.++.+.+.. .+.......+..+++|+.+++..+ +. .++
T Consensus        25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~   96 (129)
T PF13306_consen   25 KIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIG   96 (129)
T ss_dssp             EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEH
T ss_pred             EeChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccccccccccccccccCcc-cc-EEc
Confidence            566777888989999999875 6665554    788888899999976 444333456677899999999776 54 455


Q ss_pred             hHhhcCCCCCCEEEccCCcCcccccccccccCCCCCC
Q 045099          166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLK  202 (217)
Q Consensus       166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~  202 (217)
                      ...+.++ .|+.+.+.. .++.....  .+.++++|+
T Consensus        97 ~~~f~~~-~l~~i~~~~-~~~~i~~~--~F~~~~~l~  129 (129)
T PF13306_consen   97 SSSFSNC-NLKEINIPS-NITKIEEN--AFKNCTKLK  129 (129)
T ss_dssp             TTTTTT--T--EEE-TT-B-SS------GGG------
T ss_pred             hhhhcCC-CceEEEECC-CccEECCc--cccccccCC
Confidence            5567777 899998875 33332233  666666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.74  E-value=0.0063  Score=51.33  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCC-CCCccchHHhhcCCCCCEEEccCcccc--CccchHhhcCC-
Q 045099           97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN-RLNDSILSYLNTLTSLTTLILCDNSIE--GSRTKQGLANL-  172 (217)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~~l-  172 (217)
                      +|++|.++++.--...|.    .+  .++|++|.+++| .+. .+|.      +|+.|++..+...  +.+|. .+..+ 
T Consensus        73 sLtsL~Lsnc~nLtsLP~----~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPs-sLk~L~  138 (426)
T PRK15386         73 ELTEITIENCNNLTTLPG----SI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPN-GLTSLS  138 (426)
T ss_pred             CCcEEEccCCCCcccCCc----hh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcc-hHhhee
Confidence            588888876433233343    22  247888888877 444 3443      3566666655432  13333 22111 


Q ss_pred             -----------------CCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099          173 -----------------RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       173 -----------------~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N  209 (217)
                                       ++|++|++++|.... .|.    .-..+|+.|+++.+
T Consensus       139 I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~----~LP~SLk~L~ls~n  187 (426)
T PRK15386        139 INSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE----KLPESLQSITLHIE  187 (426)
T ss_pred             ccccccccccccccccCCcccEEEecCCCccc-Ccc----cccccCcEEEeccc
Confidence                             356677776665442 232    23457777777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.51  E-value=0.0057  Score=48.54  Aligned_cols=142  Identities=16%  Similarity=0.176  Sum_probs=80.2

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcch-------hhcccCCCCCCEEEc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKA-------YNSSGNLKQLKILNL  131 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~~~~l~~L~~L~L  131 (217)
                      ..++.++|+||.+......        .+ ...+.+-.+|+..+++... +|...+.+       ...+.++|+|++++|
T Consensus        30 d~~~evdLSGNtigtEA~e--------~l-~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~L   99 (388)
T COG5238          30 DELVEVDLSGNTIGTEAME--------EL-CNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDL   99 (388)
T ss_pred             cceeEEeccCCcccHHHHH--------HH-HHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence            4677788888776622100        00 1123445667777766552 33322211       124567788888888


Q ss_pred             cCCCCCccchHH----hhcCCCCCEEEccCccccCccchH-------------hhcCCCCCCEEEccCCcCcccccccc-
Q 045099          132 GNNRLNDSILSY----LNTLTSLTTLILCDNSIEGSRTKQ-------------GLANLRYLQVLDLSGNPITGRFIARL-  193 (217)
Q Consensus       132 ~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~~p~~-------------~~~~l~~L~~L~L~~n~l~~~~p~~~-  193 (217)
                      +.|.+....|+.    ++..+.|++|.+++|.+. .+...             ....-|.|+.+....|++.......+ 
T Consensus       100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a  178 (388)
T COG5238         100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA  178 (388)
T ss_pred             cccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence            888887655543    445677888888888774 33221             12234678888888888764222200 


Q ss_pred             cccCC-CCCCEEeccCCCC
Q 045099          194 GLSSL-RNLKRLDLSNNYG  211 (217)
Q Consensus       194 ~l~~l-~~L~~L~l~~N~l  211 (217)
                      ..... ..|+.+.+.+|-+
T Consensus       179 ~~l~sh~~lk~vki~qNgI  197 (388)
T COG5238         179 ALLESHENLKEVKIQQNGI  197 (388)
T ss_pred             HHHHhhcCceeEEeeecCc
Confidence            01111 2677777777655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.00068  Score=54.26  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=13.2

Q ss_pred             CCCCCccEEECCCCcCCCccCc
Q 045099           93 PPFQELQSLDLSENWFGGVSES  114 (217)
Q Consensus        93 ~~l~~L~~L~l~~n~l~~~~~~  114 (217)
                      .++.+|+.|.+.++++...+..
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~  228 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVN  228 (419)
T ss_pred             HHHHhhhhccccccccCcHHHH
Confidence            3456666666666666655443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.06  E-value=0.0033  Score=27.83  Aligned_cols=16  Identities=56%  Similarity=0.671  Sum_probs=7.9

Q ss_pred             CCCEEeccCCCCCCCC
Q 045099          200 NLKRLDLSNNYGFTTP  215 (217)
Q Consensus       200 ~L~~L~l~~N~l~~~p  215 (217)
                      +|+.|++++|+|+.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666777776666654

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.90  E-value=0.054  Score=45.83  Aligned_cols=74  Identities=22%  Similarity=0.214  Sum_probs=44.7

Q ss_pred             CCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCCCC--ccchHHhhcC------------------CCCCEEE
Q 045099           96 QELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNRLN--DSILSYLNTL------------------TSLTTLI  154 (217)
Q Consensus        96 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l------------------~~L~~L~  154 (217)
                      ..|++|++++| .+.. .|.          .|+.|++..+...  +.+|..+..+                  ++|++|+
T Consensus        94 ~nLe~L~Ls~Cs~L~s-LP~----------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~  162 (426)
T PRK15386         94 EGLEKLTVCHCPEISG-LPE----------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLS  162 (426)
T ss_pred             hhhhheEccCcccccc-ccc----------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEE
Confidence            47899999988 4443 332          3555555554421  2344443322                  4789999


Q ss_pred             ccCccccCccchHhhcCCCCCCEEEccCCc
Q 045099          155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNP  184 (217)
Q Consensus       155 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~  184 (217)
                      +++|... .+|. .+  ..+|++|.++.+.
T Consensus       163 Is~c~~i-~LP~-~L--P~SLk~L~ls~n~  188 (426)
T PRK15386        163 LTGCSNI-ILPE-KL--PESLQSITLHIEQ  188 (426)
T ss_pred             ecCCCcc-cCcc-cc--cccCcEEEecccc
Confidence            9988865 3443 22  2588999988763

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.84  E-value=0.003  Score=29.99  Aligned_cols=12  Identities=33%  Similarity=0.385  Sum_probs=5.2

Q ss_pred             CCEEEccCcccc
Q 045099          150 LTTLILCDNSIE  161 (217)
Q Consensus       150 L~~L~l~~n~l~  161 (217)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.60  E-value=0.0065  Score=28.80  Aligned_cols=21  Identities=43%  Similarity=0.599  Sum_probs=15.1

Q ss_pred             CCCEEEccCCcCcccccccccccC
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSS  197 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~  197 (217)
                      +|++|++++|+++ .+|.  .+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~--~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPS--SFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGT--TTTT
T ss_pred             CccEEECCCCcCE-eCCh--hhcC
Confidence            4788888888888 5776  4443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.81  E-value=0.025  Score=27.78  Aligned_cols=18  Identities=50%  Similarity=0.589  Sum_probs=12.7

Q ss_pred             CCCCEEeccCCCCCCCCC
Q 045099          199 RNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       199 ~~L~~L~l~~N~l~~~p~  216 (217)
                      ++|+.|+|++|+++.+|+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            567777777777777764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.81  E-value=0.025  Score=27.78  Aligned_cols=18  Identities=50%  Similarity=0.589  Sum_probs=12.7

Q ss_pred             CCCCEEeccCCCCCCCCC
Q 045099          199 RNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       199 ~~L~~L~l~~N~l~~~p~  216 (217)
                      ++|+.|+|++|+++.+|+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            567777777777777764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.61  E-value=0.049  Score=46.71  Aligned_cols=62  Identities=21%  Similarity=0.207  Sum_probs=28.4

Q ss_pred             cCCCCCEEEccCcc-ccCccchHhhcCCCCCCEEEccCCc-Cccc-ccccccccCCCCCCEEeccCC
Q 045099          146 TLTSLTTLILCDNS-IEGSRTKQGLANLRYLQVLDLSGNP-ITGR-FIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       146 ~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~l~~l~~L~~L~l~~N  209 (217)
                      .+.+|+.++++.+. ++...-......+++|+.|.+.++. +++. +..  ....++.|++|+++.+
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~--i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS--IAERCPSLRELDLSGC  305 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH--HHHhcCcccEEeeecC
Confidence            34556666666555 4322111111225566666655554 3432 111  2344555666666544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.31  E-value=0.00087  Score=51.86  Aligned_cols=89  Identities=15%  Similarity=0.117  Sum_probs=55.4

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      .+..+...+.||++.|++.....     .|+.++.|..|+++.|.+. ..|..++....+..+++..|..+ ..|. .+.
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~-----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~  108 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGK-----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQK  108 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhcc-----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccc
Confidence            34455666677777776655443     4555666667777777665 45665655556666666666665 3454 566


Q ss_pred             CCCCCCEEEccCCcCcc
Q 045099          171 NLRYLQVLDLSGNPITG  187 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~  187 (217)
                      ..+.++++++-.|.++.
T Consensus       109 k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             ccCCcchhhhccCcchH
Confidence            67777777777766553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.30  E-value=0.1  Score=25.55  Aligned_cols=13  Identities=31%  Similarity=0.465  Sum_probs=6.5

Q ss_pred             CCCEEEccCcccc
Q 045099          149 SLTTLILCDNSIE  161 (217)
Q Consensus       149 ~L~~L~l~~n~l~  161 (217)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4455555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.30  E-value=0.1  Score=25.55  Aligned_cols=13  Identities=31%  Similarity=0.465  Sum_probs=6.5

Q ss_pred             CCCEEEccCcccc
Q 045099          149 SLTTLILCDNSIE  161 (217)
Q Consensus       149 ~L~~L~l~~n~l~  161 (217)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4455555555554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.08  E-value=0.11  Score=25.61  Aligned_cols=18  Identities=39%  Similarity=0.466  Sum_probs=12.7

Q ss_pred             CCCCEEeccCCCCCCCCC
Q 045099          199 RNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       199 ~~L~~L~l~~N~l~~~p~  216 (217)
                      ++|+.|++++|+|+.+|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            356777777777777763

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.86  E-value=0.062  Score=25.81  Aligned_cols=13  Identities=38%  Similarity=0.726  Sum_probs=5.0

Q ss_pred             CCCEEEccCCCCC
Q 045099          125 QLKILNLGNNRLN  137 (217)
Q Consensus       125 ~L~~L~L~~n~l~  137 (217)
                      +|++|+|++|.|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444444

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.81  E-value=0.1  Score=44.65  Aligned_cols=112  Identities=28%  Similarity=0.197  Sum_probs=70.5

Q ss_pred             CCCCCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCC-CCccchHHhhc-CCCCCEEEccCcc-ccCccchHh
Q 045099           93 PPFQELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNR-LNDSILSYLNT-LTSLTTLILCDNS-IEGSRTKQG  168 (217)
Q Consensus        93 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~-l~~L~~L~l~~n~-l~~~~p~~~  168 (217)
                      ..+++|+.|+++.+ ......+.........+.+|+.|++++.. +++..-..+.. ++.|+.|.+.++. +++.--...
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i  290 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI  290 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence            45688999999873 22222221111133456889999999888 77665555544 7899999988777 664332224


Q ss_pred             hcCCCCCCEEEccCCcCc-cc-ccccccccCCCCCCEEec
Q 045099          169 LANLRYLQVLDLSGNPIT-GR-FIARLGLSSLRNLKRLDL  206 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n~l~-~~-~p~~~~l~~l~~L~~L~l  206 (217)
                      ...++.|++|+++.+... +. +..  ....+++|+.|.+
T Consensus       291 ~~~~~~L~~L~l~~c~~~~d~~l~~--~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHGLTDSGLEA--LLKNCPNLRELKL  328 (482)
T ss_pred             HHhcCcccEEeeecCccchHHHHHH--HHHhCcchhhhhh
Confidence            557888999999988754 21 222  3445777666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.51  E-value=0.0029  Score=49.02  Aligned_cols=88  Identities=20%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             cccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099          119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL  198 (217)
Q Consensus       119 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l  198 (217)
                      ++..+...+.||++.|++.. +-..++.++.|..|+++.|.+. ..|. .+.+...++++++..|..+- .|.  +++..
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~~-~p~--s~~k~  110 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHSQ-QPK--SQKKE  110 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchhh-CCc--ccccc
Confidence            56677888999999998862 3456777888999999999997 5665 68888888999998888875 677  88999


Q ss_pred             CCCCEEeccCCCCC
Q 045099          199 RNLKRLDLSNNYGF  212 (217)
Q Consensus       199 ~~L~~L~l~~N~l~  212 (217)
                      ++++++++-.|.|+
T Consensus       111 ~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  111 PHPKKNEQKKTEFF  124 (326)
T ss_pred             CCcchhhhccCcch
Confidence            99999999888764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.84  E-value=0.045  Score=41.52  Aligned_cols=81  Identities=25%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC-ccchHHhhc-CCCCCEEEccCcc-ccCccchHhhcCCC
Q 045099           97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN-DSILSYLNT-LTSLTTLILCDNS-IEGSRTKQGLANLR  173 (217)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~-l~~L~~L~l~~n~-l~~~~p~~~~~~l~  173 (217)
                      .++.+|-++..|....-.    .+..++.++.|.+.++.-- +.-...++. .++|+.|++++|. ||.. -...+..++
T Consensus       102 ~IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLE----HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLK  176 (221)
T ss_pred             eEEEEecCCchHHHHHHH----HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhh
Confidence            467888888888776554    6778888888888877643 222333333 4789999999774 6532 223566778


Q ss_pred             CCCEEEccC
Q 045099          174 YLQVLDLSG  182 (217)
Q Consensus       174 ~L~~L~L~~  182 (217)
                      +|+.|.+.+
T Consensus       177 nLr~L~l~~  185 (221)
T KOG3864|consen  177 NLRRLHLYD  185 (221)
T ss_pred             hhHHHHhcC
Confidence            888887755

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.45  E-value=0.057  Score=41.01  Aligned_cols=34  Identities=32%  Similarity=0.369  Sum_probs=17.2

Q ss_pred             CCCCCEEEccCC-CCCccchHHhhcCCCCCEEEcc
Q 045099          123 LKQLKILNLGNN-RLNDSILSYLNTLTSLTTLILC  156 (217)
Q Consensus       123 l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~  156 (217)
                      .++|+.|++++| +|+......+..+++|+.|.+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            345555555533 3554444455555555555443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.81  E-value=0.72  Score=22.75  Aligned_cols=16  Identities=44%  Similarity=0.380  Sum_probs=9.4

Q ss_pred             CCCCEEeccCCCCCCC
Q 045099          199 RNLKRLDLSNNYGFTT  214 (217)
Q Consensus       199 ~~L~~L~l~~N~l~~~  214 (217)
                      .+|+.|+|+.|+++.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4566666666665443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=85.51  E-value=0.66  Score=40.49  Aligned_cols=64  Identities=30%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCC--CCCccchHHhh--cCCCCCEEEccCcccc
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN--RLNDSILSYLN--TLTSLTTLILCDNSIE  161 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~~~--~l~~L~~L~l~~n~l~  161 (217)
                      +.+.+..++|++|++......  ..--...|+|+.|+|++|  .+..  ..++.  +...|++|.+.+|.+.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~--sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDAL--SSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC  283 (585)
T ss_pred             CCcceeeeecccchhhchhhh--hHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence            345556666666666544311  001224556666666666  3321  11121  2234566666666654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.81  E-value=1.5  Score=21.79  Aligned_cols=13  Identities=46%  Similarity=0.756  Sum_probs=7.5

Q ss_pred             CCCEEEccCCCCC
Q 045099          125 QLKILNLGNNRLN  137 (217)
Q Consensus       125 ~L~~L~L~~n~l~  137 (217)
                      +|++|+|++|.+.
T Consensus         3 ~L~~LdL~~N~i~   15 (28)
T smart00368        3 SLRELDLSNNKLG   15 (28)
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	8e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (272), Expect = 2e-27
 Identities = 57/221 (25%), Positives = 85/221 (38%), Gaps = 33/221 (14%)

Query: 6   GCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELS 65
             L  E   L+  K              +L  W  +   + C ++ + C     +VT + 
Sbjct: 8   QSLYREIHQLISFKDVLPD-------KNLLPDWSSN--KNPCTFDGVTCRD--DKVTSID 56

Query: 66  LNRLKHYKSSNPNNSSDG----VIILDLS---------LFPPFQELQSLDLSENWFGGVS 112
           L+        +  +SS      +  L LS          F     L SLDLS N   G  
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV 116

Query: 113 ESKAYNSSGNLKQLKILNLGNNRLNDSI-LSYLNTLTSLTTLILCDNSIEGS--RTKQGL 169
            +    S G+   LK LN+ +N L+    +S    L SL  L L  NSI G+        
Sbjct: 117 TTLT--SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
                L+ L +SGN I+G     + +S   NL+ LD+S+N 
Sbjct: 175 DGCGELKHLAISGNKISGD----VDVSRCVNLEFLDVSSNN 211

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 1e-15
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 94  PFQELQSLDLSENWFGG-VSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTT 152
           P + LQ L L+EN F G + +      SG    L  L+L  N    ++  +  + + L +
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDF----LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322

Query: 153 LILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L L  N+  G      L  +R L+VLDLS N  +G     L  +   +L  LDLS+N
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 78  NNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137
            NS  G  ++   L     EL+ L +S N   G               L+ L++ +N  +
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDV------DVSRCVNLEFLDVSSNNFS 213

Query: 138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS 197
             I   L   ++L  L +  N + G  ++  ++    L++L++S N   G     +    
Sbjct: 214 TGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVG----PIPPLP 267

Query: 198 LRNLKRLDLSNN 209
           L++L+ L L+ N
Sbjct: 268 LKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 7/112 (6%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           L SL LS N+  G   S    S G+L +L+ L L  N L   I   L  + +L TLIL  
Sbjct: 420 LVSLHLSFNYLSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           N + G     GL+N   L  + LS N +TG       +  L NL  L LSNN
Sbjct: 476 NDLTGEIPS-GLSNCTNLNWISLSNNRLTGEI--PKWIGRLENLAILKLSNN 524

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
              L+ LD+S N F            G+   L+ L++  N+L+      ++T T L  L 
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           +  N   G         L+ LQ L L+ N  TG     L   +   L  LDLS N+
Sbjct: 254 ISSNQFVGP---IPPLPLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNH 305

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 36/123 (29%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI-LSYLNTLT 148
            L      L  LDLS N F G          G+   L+ L L +N  +  + +  L  + 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPP----FFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 149 SLTTLILCDNSIEGSRTKQGLANLRY-LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS 207
            L  L L  N   G   +  L NL   L  LDLS N  +G  +  L  +    L+ L L 
Sbjct: 344 GLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 208 NNY 210
           NN 
Sbjct: 403 NNG 405

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 36/117 (30%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 96  QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-NTLTSLTTLI 154
             L+SL LS N F G       ++   ++ LK+L+L  N  +  +   L N   SL TL 
Sbjct: 318 SLLESLALSSNNFSGELPM---DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 155 LCDNSIEGS-RTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           L  N+  G             LQ L L  N  TG+    L   +   L  L LS NY
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFNY 429

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 95  FQELQSLDLSENWF-GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTL 153
             +L+ L L  N   G + +         +K L+ L L  N L   I S L+  T+L  +
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQE-----LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 154 ILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
            L +N + G    + +  L  L +L LS N  +G       L   R+L  LDL+ N 
Sbjct: 496 SLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL 549

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 65  SLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLK 124
           +    K    +       G+    L+           +++   +GG +      +  N  
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLS---TRNPCNITSRVYGGHTSP----TFDNNG 632

Query: 125 QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184
            +  L++  N L+  I   + ++  L  L L  N I GS     + +LR L +LDLS N 
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNK 691

Query: 185 ITGRFIARLGLSSLRNLKRLDLSNN 209
           + GR      +S+L  L  +DLSNN
Sbjct: 692 LDGRIPQ--AMSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 96  QELQSLDLSENWF-GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
           + L++L L  N   G +          N   L  ++L NNRL   I  ++  L +L  L 
Sbjct: 466 KTLETLILDFNDLTGEIPSGL-----SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L +NS  G+   + L + R L  LDL+ N   G   A +   S   +    ++  
Sbjct: 521 LSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSG-KIAANFIAGK 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 6e-11
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 78  NNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137
            N   G   + +      +E         + G  SE         L      N+ +    
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-----LNRLSTRNPCNITSRVYG 621

Query: 138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS 197
                  +   S+  L +  N + G   K+ + ++ YL +L+L  N I+G     +G   
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEVG--D 678

Query: 198 LRNLKRLDLSNN 209
           LR L  LDLS+N
Sbjct: 679 LRGLNILDLSSN 690

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 29/136 (21%)

Query: 96  QELQSLDLSENWF-GGVSESKAYNSSGNLKQLKILNLGNNRLN----------------- 137
           + L  L LS N F G +         G+ + L  L+L  N  N                 
Sbjct: 514 ENLAILKLSNNSFSGNIPAEL-----GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568

Query: 138 ---DSILSYLNTLTSLTTLILCDNSIEGS-RTKQGLANLRYLQVLDLSGNPITGRFIARL 193
                   Y+             N +E      + L  L      +++     G      
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 194 GLSSLRNLKRLDLSNN 209
              +  ++  LD+S N
Sbjct: 629 D--NNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 95  FQELQSLDLSENWF-GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTL 153
              +  LD+S N   G + +       G++  L ILNLG+N ++ SI   +  L  L  L
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKE-----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

Query: 154 ILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR 188
            L  N ++G   +  ++ L  L  +DLS N ++G 
Sbjct: 686 DLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSGP 719

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 14/93 (15%)

Query: 96  QELQSLDLSENWFGGV--SESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTL 153
             L  L+L  N   G            G+L+ L IL+L +N+L+  I   ++ LT LT +
Sbjct: 656 PYLFILNLGHNDISGSIPD------EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709

Query: 154 ILCDNSIEGS--RTKQGLANLRYLQVLDLSGNP 184
            L +N++ G      Q               NP
Sbjct: 710 DLSNNNLSGPIPEMGQ----FETFPPAKFLNNP 738

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 5e-17
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +  + F  F  LQ LDL+      +      +    L  LK L L  N+  +      + 
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELP-----SGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
             SLT L +  N+         L NL  L+ LDLS + I       L L +L +L+ L+L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 207 SNN 209
           S N
Sbjct: 384 SYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 5e-15
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L    F    +L+ LDL+            +    NL  LK+LNL ++ L+ S     + 
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPF---QNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 147 LTSLTTLILCDNSIEGSRTKQ--GLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
           L +L  L L  N       ++   L  L  L++L LS   ++   I +   +SL+ +  +
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS--IDQHAFTSLKMMNHV 505

Query: 205 DLSNN 209
           DLS+N
Sbjct: 506 DLSHN 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 6e-15
 Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L        + L+ LDLS +               NL  L+ LNL  N            
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCN--LQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
              L  L L    ++    +    NL  L+VL+LS + +     +      L  L+ L+L
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI--SSEQLFDGLPALQHLNL 456

Query: 207 SNN 209
             N
Sbjct: 457 QGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 32/143 (22%), Positives = 46/143 (32%), Gaps = 17/143 (11%)

Query: 77  PNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL 126
           P    +    L+ S           F     L  LDL+      + E    ++  +  +L
Sbjct: 28  PGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE----DTFQSQHRL 83

Query: 127 KILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
             L L  N L     + L+   +L  L      I        L N + L+ L L  N I+
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHIS 142

Query: 187 GRFIARLGLSSLRNLKRLDLSNN 209
              I          LK LD  NN
Sbjct: 143 S--IKLPKGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 61  VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSS 120
              L  + ++        +  D  I   +        ++S++L +++F  +S     N+ 
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS----NTF 274

Query: 121 GNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDL 180
                L+ L+L    L+  + S L  L++L  L+L  N  E        +N   L  L +
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSI 332

Query: 181 SGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            GN      +    L +L NL+ LDLS++
Sbjct: 333 KGNTKRL-ELGTGCLENLENLRELDLSHD 360

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
            + L+ S N    +  +    +   L  L  L+L   ++         +   L TL+L  
Sbjct: 35  TECLEFSFNVLPTIQNT----TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           N +     +  L+  + L+ L      I+   I  + L + + L+ L L +N+
Sbjct: 91  NPLIFM-AETALSGPKALKHLFFIQTGISS--IDFIPLHNQKTLESLYLGSNH 140

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 8e-13
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI-LSYLNTLTSLTTLILC 156
           LQSL+LS N    +       +     QL++L+L   RL      S    L  L  L L 
Sbjct: 378 LQSLNLSYNEPLSLKT----EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 157 DNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG-LSSLRNLKRLDLSNNY 210
            + ++ S  +Q    L  LQ L+L GN      I +   L +L  L+ L LS   
Sbjct: 434 HSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 15/156 (9%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSE 113
           L+  RLK   + +P  +   + +L+LS          LF     LQ L+L  N F   + 
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 114 SKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR 173
            K  NS   L +L+IL L    L+        +L  +  + L  N +  S + + L++L+
Sbjct: 467 QKT-NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS-SIEALSHLK 524

Query: 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            +  L+L+ N I+   I    L  L   + ++L  N
Sbjct: 525 GI-YLNLASNHISI--ILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 4/123 (3%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +D       + L+SL L  N    +            ++LK+L+  NN ++      +++
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLP----KGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L   T L L  N  + +  + G  +    Q L+  G          L  S++++L     
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 207 SNN 209
            + 
Sbjct: 236 EDM 238

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 25/163 (15%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLS----------LFPPFQELQ--SLDLSENWFGGV 111
           L  N +   K      +   + +LD                 Q+    SL+L+ N   G+
Sbjct: 136 LGSNHISSIKLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 112 SESKAYNSSGNLKQLKILNLGNNRLNDSILSYL--NTLTSLTTLILCDNSIEG--SRTKQ 167
                   + +    + LN G  +    I   L  +T+ SL      D   E       +
Sbjct: 195 EPG-----AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 168 GLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           GL  +  ++ ++L  +      I+         L+ LDL+  +
Sbjct: 250 GLCEM-SVESINLQKHYFFN--ISSNTFHCFSGLQELDLTATH 289

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 17/112 (15%)

Query: 64  LSLNRLKHYKSSNPNNSSD--GVIILDLS----------LFPPFQELQSLDLSENWFGGV 111
           L  N          N+      + IL LS           F   + +  +DLS N     
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 112 SESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGS 163
           S      +  +LK +  LNL +N ++  + S L  L+   T+ L  N ++ +
Sbjct: 516 SI----EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 9e-17
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
           F   ++L+ LD   +    +SE   +    +L+ L  L++ +     +     N L+SL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 152 TLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            L +  NS + +        LR L  LDLS   +    ++    +SL +L+ L++S+N
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHN 504

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
            ++LDLS N    +       S  +  +L++L+L    +         +L+ L+TLIL  
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           N I+        + L  LQ L      +    +    +  L+ LK L++++N 
Sbjct: 86  NPIQSL-ALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNL 135

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           ++   +     L +L L+ N    ++      +   L  L+ L      L       +  
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLK---- 202
           L +L  L +  N I+  +  +  +NL  L+ LDLS N I    I    L  L  +     
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNL 180

Query: 203 RLDLSNN 209
            LDLS N
Sbjct: 181 SLDLSLN 187

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
            +F   + L  LDLS+     +S      +  +L  L++LN+ +N            L S
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L  L    N I  S+ ++       L  L+L+ N        +  L  +++ ++L +   
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 579

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 12/136 (8%)

Query: 74  SSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGN 133
                   D  +   + LF     + S  L       V               + L L N
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK------DFSYNFGWQHLELVN 313

Query: 134 NRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL 193
            +        L +L  LT       +           +L  L+ LDLS N ++ +     
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 194 GLSSLRNLKRLDLSNN 209
                 +LK LDLS N
Sbjct: 368 SDFGTTSLKYLDLSFN 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 11/127 (8%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND-SILSYLN 145
           L L  F     LQ L   E     +         G+LK LK LN+ +N +    +  Y +
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 146 TLTSLTTLILCDNSIEGSRTK--QGLANLRYLQV-LDLSGNPITGRFIARLGLSSLRNLK 202
            LT+L  L L  N I+       + L  +  L + LDLS NP+      + G      L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPGAFKEIRLH 203

Query: 203 RLDLSNN 209
           +L L NN
Sbjct: 204 KLTLRNN 210

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 32/176 (18%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLS-----------LFPPFQELQSLDLSENWFGGVS 112
           LSLN +   +          +  L L                   L+   L    F    
Sbjct: 184 LSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 113 ESKAYNSS--GNLKQLKILNLGNNRLNDS---ILSYLNTLTSLTTLILCDNSIEGSRTKQ 167
             + ++ S    L  L I       L+     I+   N LT++++  L   +IE  +   
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 168 GLANLRYLQVLDLSGNPITGRFIARL--------------GLSSLRNLKRLDLSNN 209
                ++L++++          +  L                  L +L+ LDLS N
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +  ++F     L+ L LS ++    + +     S     L ILNL  N+++       + 
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L  L  L L  N I    T Q    L  +  + LS N      + R   + + +L+RL L
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ--LTRNSFALVPSLQRLML 461

Query: 207 SNN 209
              
Sbjct: 462 RRV 464

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 22/167 (13%)

Query: 53  KCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLS----------LFPPFQELQSLD 102
           KC  +   V + S  +L    +  P++    + +L+L+           F  + +L SLD
Sbjct: 1   KCTVS-HEVADCSHLKL----TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 103 LSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEG 162
           +  N    +           L  LK+LNL +N L+          T+LT L L  NSI+ 
Sbjct: 56  VGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 163 SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            +        + L  LDLS N ++           L NL+ L LSNN
Sbjct: 112 IK-NNPFVKQKNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 5e-16
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
             F     L  L L  N    +      N     K L  L+L +N L+ + L     L +
Sbjct: 91  KTFAFCTNLTELHLMSNSIQKIKN----NPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 150 LTTLILCDNSIEG-SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
           L  L+L +N I+     +  +     L+ L+LS N I     +     ++  L  L L+N
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE--FSPGCFHAIGRLFGLFLNN 204

Query: 209 N 209
            
Sbjct: 205 V 205

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
           F     L+ LDL  N  G             L+ +  + L  N+      +    + SL 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 152 TLILCDNSIEGSRTKQG-LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
            L+L   +++   +       LR L +LDLS N I    I    L  L  L+ LDL +N 
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN--INDDMLEGLEKLEILDLQHNN 515

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 38/163 (23%), Positives = 54/163 (33%), Gaps = 21/163 (12%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSE 113
           L LN +    +       + +  + LS           F     LQ L L       V  
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 114 SKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIE-------GSRTK 166
           S   +    L+ L IL+L NN + +     L  L  L  L L  N++             
Sbjct: 472 S--PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 167 QGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             L  L +L +L+L  N      I       L  LK +DL  N
Sbjct: 530 YFLKGLSHLHILNLESNGFDE--IPVEVFKDLFELKIIDLGLN 570

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSS----GNLKQLKILNLGNNRLNDSILS 142
           ++  +    ++L+ LDL  N    + +             L  L ILNL +N  ++  + 
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 143 YLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLK 202
               L  L  + L  N++          N   L+ L+L  N IT     ++   + RNL 
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLT 612

Query: 203 RLDLSNN 209
            LD+  N
Sbjct: 613 ELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 94  PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTL 153
            +  L  LDLS N    V      +S   L QL+   L  N +       L+ L ++  L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 154 ILCDNSIEGSRTKQGL--------ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L  +  + S +   L          L+ L+ L++  N I G  I     + L NLK L 
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG--IKSNMFTGLINLKYLS 359

Query: 206 LSNNY 210
           LSN++
Sbjct: 360 LSNSF 364

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 15/133 (11%)

Query: 85  IILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND------ 138
           +    S F P + L  LDLS N    ++     +    L++L+IL+L +N L        
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANIN----DDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 139 --SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLS 196
               + +L  L+ L  L L  N  +     +   +L  L+++DL  N +    +     +
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNT--LPASVFN 581

Query: 197 SLRNLKRLDLSNN 209
           +  +LK L+L  N
Sbjct: 582 NQVSLKSLNLQKN 594

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
             L      + LQ L LS N    +              LK L L +N++ +      + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSE--ELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 147 LTSLTTLILCDNSIEGSRTK--QGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
           +  L  L L +  +  S T+          ++ L LS + ++             NL  L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 205 DLSNNY 210
           DLS N 
Sbjct: 254 DLSYNN 259

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 80  SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS 139
                    +        L  L+L  N F  +          +L +LKI++LG N LN  
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV----EVFKDLFELKIIDLGLNNLNTL 575

Query: 140 ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG 187
             S  N   SL +L L  N I     K      R L  LD+  NP   
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 12/127 (9%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSS-----GNLKQLKILNLGNNRLNDSILSYLNT 146
                 ++ L+L  ++        +           LK L+ LN+ +N +     +    
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 147 LTSLTTLILCDNSIEG----SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLK 202
           L +L  L L ++        + T   LA+   L +L+L+ N I+   I     S L +L+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISK--IESDAFSWLGHLE 408

Query: 203 RLDLSNN 209
            LDL  N
Sbjct: 409 VLDLGLN 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 7e-16
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 98  LQSLDLSENWFGGVSESKAYN---SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
           + ++D S N  G V          +      +  +NL NN+++       +T + L+++ 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 155 LCDNSIEG------SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
           L  N +            +   N   L  +DL  N +T         ++L  L  +DLS 
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSY 522

Query: 209 N 209
           N
Sbjct: 523 N 523

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.9 bits (169), Expect = 6e-14
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 96  QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLIL 155
           ++L  L+   N   G   +      G+  +L  LNL  N++ +   ++      +  L  
Sbjct: 330 KKLGMLECLYNQLEGKLPA-----FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG-----LSSLRNLKRLDLSNN 209
             N ++         ++  +  +D S N I                   N+  ++LSNN
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 8e-11
 Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 121 GNLKQLKILNLGNNRL--------NDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL 172
             L +++++N+  NR         +   L+       +  + +  N+++    +  L  +
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           + L +L+   N + G+  A     S   L  L+L+ N
Sbjct: 330 KKLGMLECLYNQLEGKLPA---FGSEIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 14/117 (11%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           L S+DL  N    +S+         L  L  ++L  N  +    +     ++L    + +
Sbjct: 490 LTSIDLRFNKLTKLSDDFRA---TTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRN 545

Query: 158 NSIEGSRTKQG-----LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
                           +     L  L +  N I       +      N+  LD+ +N
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-----VNEKITPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 26/185 (14%), Positives = 47/185 (25%), Gaps = 28/185 (15%)

Query: 37  SWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLS------ 90
           S    G     +W   K     G    +SLN                V  L L       
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGR------------VTGLSLEGFGASG 95

Query: 91  LFPP----FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-- 144
             P       EL+ L L  +                    +           + + Y   
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
              + L    +  +  + S  K+          +    N IT   +++  +  L  L++ 
Sbjct: 156 EDFSDLIKDCINSDPQQKS-IKKSSRITLKDTQIGQLSNNITF--VSK-AVMRLTKLRQF 211

Query: 205 DLSNN 209
            + N+
Sbjct: 212 YMGNS 216

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 17/138 (12%), Positives = 40/138 (28%), Gaps = 31/138 (22%)

Query: 97  ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI---------LSYLNT- 146
           +   +    N    VS++        L +L+   +GN+                 Y    
Sbjct: 184 KDTQIGQLSNNITFVSKA-----VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 147 ---------LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS 197
                    L  LT + + +           L  L  +Q+++++ N        +    +
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 198 L------RNLKRLDLSNN 209
           L        ++ + +  N
Sbjct: 298 LADAPVGEKIQIIYIGYN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 10/100 (10%), Positives = 32/100 (32%), Gaps = 3/100 (3%)

Query: 121 GNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG---LANLRYLQV 177
            +  ++  L+L     +  +   +  LT L  L L  +  + +    G   ++     + 
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 178 LDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPSQ 217
                      F+         +L +  ++++    +  +
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 21/123 (17%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGN------NRLNDSILSYLNTLT 148
              L  +DLS N F             N   LK   + N      NR        +    
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQ-----PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 149 SLTTLILCDNSIEGSRTKQGL--ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           SLT L +  N I      + +       + VLD+  NP     ++   +          L
Sbjct: 567 SLTQLQIGSNDI------RKVNEKITPNISVLDIKDNPNISIDLS--YVCPYIEAGMYML 618

Query: 207 SNN 209
             +
Sbjct: 619 FYD 621

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 85  IILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL 144
            I+  + F   +ELQ LD   +    V+E  A+    +L++L  L++             
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF---LSLEKLLYLDISYTNTKIDFDGIF 444

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
             LTSL TL +  NS + +      AN   L  LDLS   +    I+     +L  L+ L
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ--ISWGVFDTLHRLQLL 502

Query: 205 DLSNN 209
           ++S+N
Sbjct: 503 NMSHN 507

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 16/144 (11%)

Query: 77  PNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL 126
           P++       +DLS           F  F ELQ LDLS      + +     +   L  L
Sbjct: 27  PDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED----KAWHGLHHL 82

Query: 127 KILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
             L L  N +        + LTSL  L+  +  +    +   +  L  L+ L+++ N I 
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIH 141

Query: 187 GRFIARLGLSSLRNLKRLDLSNNY 210
              +     S+L NL  +DLS NY
Sbjct: 142 SCKLPAY-FSNLTNLVHVDLSYNY 164

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-L 144
           + + S F   ++L  LD+S        +         L  L  L +  N   D+ LS   
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
              T+LT L L    +E   +      L  LQ+L++S N +    +     + L +L  L
Sbjct: 470 ANTTNLTFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHNNLLF--LDSSHYNQLYSLSTL 526

Query: 205 DLSNNY 210
           D S N 
Sbjct: 527 DCSFNR 532

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 16/156 (10%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSE 113
              + LK     +   S + ++ LD+S          +F     L +L ++ N F   + 
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 114 SKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR 173
           S   N   N   L  L+L   +L        +TL  L  L +  N++           L 
Sbjct: 466 S---NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLY 521

Query: 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            L  LD S N I       +     ++L   +L+NN
Sbjct: 522 SLSTLDCSFNRIET--SKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 9e-13
 Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           ++   +     L +L L+ N     S      S   L  L+ L     +L       +  
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLK---- 202
           L +L  L +  N I   +     +NL  L  +DLS N I    I    L  LR       
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT--ITVNDLQFLRENPQVNL 184

Query: 203 RLDLSNN 209
            LD+S N
Sbjct: 185 SLDMSLN 191

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 32/153 (20%), Positives = 46/153 (30%), Gaps = 15/153 (9%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLSL----FPPFQELQSLDLSENWFGGVSESKAYNS 119
           L+   +K+ +    +     + I+   L          L+SL L+ N             
Sbjct: 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSIS------FK 345

Query: 120 SGNLKQLKILNLGNNRLN--DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQV 177
              L  L  L+L  N L+             SL  L L  N             L  LQ 
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQH 403

Query: 178 LDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           LD   + +  R        SL  L  LD+S   
Sbjct: 404 LDFQHSTLK-RVTEFSAFLSLEKLLYLDISYTN 435

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 12/145 (8%)

Query: 65  SLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLK 124
            +  L          +       D+  F     + ++ L+      +             
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE------DVPKHF 307

Query: 125 QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184
           + + L++   +L          L  L +L L  N    S  K  L +L YL   DLS N 
Sbjct: 308 KWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGSISFKKVALPSLSYL---DLSRNA 361

Query: 185 ITGRFIARLGLSSLRNLKRLDLSNN 209
           ++             +L+ LDLS N
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFN 386

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
               ++F     L  LDLS+     +S          L +L++LN+ +N L     S+ N
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISW----GVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
            L SL+TL    N IE S         + L   +L+ N + 
Sbjct: 519 QLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 5/125 (4%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
           + F     L  +DLS N+   ++ +       N +    L++  N ++  I         
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK 205

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG----RFIARLGLSSLRNLKRLD 205
           L  L L  N    +  K  L NL  L V  L                  +  L ++   +
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 206 LSNNY 210
               Y
Sbjct: 266 FRLTY 270

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 17/147 (11%)

Query: 74  SSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSS--GNLKQLKILNL 131
             N N+S+     +  +       L    L    F      + +  S    L  + I   
Sbjct: 212 RGNFNSSN-----IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 132 GNNRLNDSILSY--LNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRF 189
                ND        + L +++ + L   SI+     + +      Q L +    +    
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQ-- 321

Query: 190 IARLGLSSLRNLKRLDLSNNYGFTTPS 216
                   L  LK L L+ N G  +  
Sbjct: 322 ---FPTLDLPFLKSLTLTMNKGSISFK 345

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   CLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCD--WERLKCNATA--GRVT 62
           C  +++  LL+IK+   +          L+SW+    +DCC+  W  + C+      RV 
Sbjct: 3   CNPQDKQALLQIKKDLGN-------PTTLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVN 53

Query: 63  ELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLS-ENWFGGVSESKAYNSSG 121
            L L             +      +  SL      L  L +   N   G        +  
Sbjct: 54  NLDL----------SGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPP----AIA 98

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
            L QL  L + +  ++ +I  +L+ + +L TL    N++ G+     +++L  L  +   
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFD 157

Query: 182 GNPITGRFIARLG-LSSLRNLKRLDLSNNY 210
           GN I+G      G  S L     + +S N 
Sbjct: 158 GNRISGAIPDSYGSFSKL--FTSMTISRNR 185

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
             S+ +S N   G        +  NL  L  ++L  N L         +  +   + L  
Sbjct: 176 FTSMTISRNRLTGKIPP----TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           NS+     K  +   + L  LDL  N I G      GL+ L+ L  L++S N
Sbjct: 231 NSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFN 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           L  +DLS N   G     A    G+ K  + ++L  N L   +   +    +L  L L +
Sbjct: 199 LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRN 253

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           N I G+  +  L  L++L  L++S N + G  I + G  +L+       +NN
Sbjct: 254 NRIYGTLPQG-LTQLKFLHSLNVSFNNLCGE-IPQGG--NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 96  QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLIL 155
           +  Q + L++N              G  K L  L+L NNR+  ++   L  L  L +L +
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNP 184
             N++ G   + G  NL+   V   + N 
Sbjct: 276 SFNNLCGEIPQGG--NLQRFDVSAYANNK 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 62  TELSLNRLKHYKSSNPNNSSDGVI---ILDLSL---------FPPFQELQSLDLSENWFG 109
           T+LSL+          + S  G      LDLS          F   ++L+ LD   +   
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 110 GVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL 169
            +SE   +    +L+ L  L++ +     +     N L+SL  L +  NS + +      
Sbjct: 115 QMSEFSVFL---SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             LR L  LDLS   +    ++    +SL +L+ L++S+N
Sbjct: 172 TELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHN 209

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L   +F    +L  L LS N            S      LK L+L  N +  ++ S    
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGVI-TMSSNFLG 99

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L  L  L    ++++         +LR L  LD+S              + L +L+ L +
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKM 157

Query: 207 SNN 209
           + N
Sbjct: 158 AGN 160

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 9/117 (7%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS--YLNTLTSLTT 152
                 L+L  N    +           L QL  L+L +N L+            TSL  
Sbjct: 27  PSSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 153 LILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L L  N +    +      L  L+ LD   + +  +        SLRNL  LD+S+ 
Sbjct: 83  LDLSFNGVITMSS--NFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT 136

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
               +F     L+ L ++ N F    E+   +    L+ L  L+L   +L     +  N+
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSF---QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL-RNLKRLD 205
           L+SL  L +  N+   S        L  LQVLD S N I      +  L     +L  L+
Sbjct: 198 LSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM--TSKKQELQHFPSSLAFLN 254

Query: 206 LSNN 209
           L+ N
Sbjct: 255 LTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 91  LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSL 150
           +F   + L  LDLS+     +S      +  +L  L++LN+ +N            L SL
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 151 TTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPI 185
             L    N I  S+ ++       L  L+L+ N  
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
              +S T L L  N ++ S        L  L  L LS N ++ +           +LK L
Sbjct: 25  GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 205 DLSNN 209
           DLS N
Sbjct: 84  DLSFN 88

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 6e-15
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
           S F   ++L+ LD   +    +SE   +    +L+ L  L++ +     +     N L+S
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFL---SLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L  L +  NS + +        LR L  LDLS   +    ++    +SL +L+ L++++N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMASN 504

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-L 144
           + + S+F   + L  LD+S                  L  L++L +  N   ++ L    
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
             L +LT L L    +E   +     +L  LQVL+++ N +    +       L +L+++
Sbjct: 467 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK--SVPDGIFDRLTSLQKI 523

Query: 205 DLSNN 209
            L  N
Sbjct: 524 WLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
            ++LDLS N    +       S  +  +L++L+L    +         +L+ L+TLIL  
Sbjct: 30  TKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           N I+ S      + L  LQ L      +    +    +  L+ LK L++++N 
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNL 135

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           ++   +     L +L L+ N    ++      +   L  L+ L      L       +  
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLK---- 202
           L +L  L +  N I+  +  +  +NL  L+ LDLS N I    I    L  L  +     
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNL 180

Query: 203 RLDLSNN 209
            LDLS N
Sbjct: 181 SLDLSLN 187

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 16/154 (10%)

Query: 60  RVTELSLNRLKH----YKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK 115
            + +   + L+               D  +   + LF     + S  L       V +  
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175
                   + L+++N    +           L SL  L    N    + ++  L +L   
Sbjct: 302 YNF---GWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAFSEVDLPSL--- 349

Query: 176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           + LDLS N ++ +           +LK LDLS N
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 13/131 (9%)

Query: 91  LFPPFQELQSLDLSENWFGGVSESKAYNSS--GNLKQLKILNLGNNRLN---DSILSYLN 145
                  L+   L    F      + ++ S    L  L I       L+   D I+   N
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT++++  L   +IE  +        ++L++++                  L++LKRL 
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--------LKLKSLKRLT 331

Query: 206 LSNNYGFTTPS 216
            ++N G    S
Sbjct: 332 FTSNKGGNAFS 342

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
            +F   + L  LDLS+     +S      +  +L  L++LN+ +N+L        + LTS
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 150 LTTLILCDNSIEGS 163
           L  + L  N  + S
Sbjct: 520 LQKIWLHTNPWDCS 533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 7e-15
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-LNTLT 148
            +       + L LS N+   V+ S    S   L+QL++L LG+     +I       L 
Sbjct: 18  QVPQVLNTTERLLLSFNYIRTVTAS----SFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
           +L  L L  + I           L +L  L L    ++   +      +L+ L RLDLS 
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 209 NY 210
           N 
Sbjct: 133 NQ 134

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +  S FP  ++LQ L+L   +     + +A+    NL  L+IL+LG++++          
Sbjct: 39  VTASSFPFLEQLQLLELGSQYTPLTIDKEAFR---NLPNLRILDLGSSKIYFLHPDAFQG 95

Query: 147 LTSLTTLILCDNSIEGSRTKQG-LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
           L  L  L L    +  +  K G   NL+ L  LDLS N I            L +LK +D
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-SLYLHPSFGKLNSLKSID 154

Query: 206 LSNN 209
            S+N
Sbjct: 155 FSSN 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 10/127 (7%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS--YL 144
           +D   F     L+ LDL  +    +      ++   L  L  L L    L+D++L   Y 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHP----DAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLR--NLK 202
             L +LT L L  N I           L  L+ +D S N I    +    L  L+   L 
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF--LVCEHELEPLQGKTLS 177

Query: 203 RLDLSNN 209
              L+ N
Sbjct: 178 FFSLAAN 184

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 44/172 (25%), Positives = 64/172 (37%), Gaps = 26/172 (15%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSE 113
           LS N L    SSN       V  +DL            F   ++LQ+LDL +N    +  
Sbjct: 321 LSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379

Query: 114 SKA-------YNSSGNLK----QLKILNLGNNRL-NDSILSYLNTLTSLTTLILCDNSIE 161
             +        N    L        +++L  NRL N  IL +L  +  L  LIL  N   
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 162 GSRTKQGLANLRYLQVLDLSGNPITGRFIARLG---LSSLRNLKRLDLSNNY 210
                Q  +    L+ L L  N +   +   L       L +L+ L L++NY
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 46  CCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLS-----------LFPP 94
                 L        +  LS NRL++            + IL L+               
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 95  FQELQSLDLSENWFGGVSESK-AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTL 153
              L+ L L EN      E++  ++    L  L++L L +N LN       + LT+L  L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 154 ILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            L  N +              L++LD+S N +              +L  LD+++N
Sbjct: 510 SLNSNRL---TVLSHNDLPANLEILDISRNQLL-----APNPDVFVSLSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 8/146 (5%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNL 123
           +S N      + N +N+        L L      +       +      ++    +    
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAH---HIMGAGFGFHNIKDPDQN--TFAGLAR 265

Query: 124 KQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGN 183
             ++ L+L +  +         TL  L  L L  N I     +     L  LQVL+LS N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYN 324

Query: 184 PITGRFIARLGLSSLRNLKRLDLSNN 209
            +    +       L  +  +DL  N
Sbjct: 325 LLG--ELYSSNFYGLPKVAYIDLQKN 348

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 25/140 (17%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +    F     LQ L+LS N  G +      ++   L ++  ++L  N +          
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYS----SNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYL-----------------QVLDLSGNPITGRF 189
           L  L TL L DN++    T   + ++  +                  ++ LS N +    
Sbjct: 361 LEKLQTLDLRDNALT---TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417

Query: 190 IARLGLSSLRNLKRLDLSNN 209
           I    L  + +L+ L L+ N
Sbjct: 418 ILYF-LLRVPHLQILILNQN 436

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 13/146 (8%)

Query: 74  SSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYN--------SSGNLKQ 125
           ++N   S   V             L+ LD+S N +         N        S      
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 126 LKILNLGNNRLNDSILSYLNTL--TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGN 183
           +     G + + D   +    L  +S+  L L    +    ++     L+ L+VL+L+ N
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYN 300

Query: 184 PITGRFIARLGLSSLRNLKRLDLSNN 209
            I    IA      L NL+ L+LS N
Sbjct: 301 KINK--IADEAFYGLDNLQVLNLSYN 324

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 31/175 (17%)

Query: 64  LSLNRLKHYKSSNPNNSSDGVIILDLS----------LFPPFQ--ELQSLDLSENWFGGV 111
           LS N+++           + +  +D S             P Q   L    L+ N     
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 112 SESKAYNSSGNLK--QLKILNLGNNRLNDSILS------------YLNTLTSLTTLILCD 157
                       +   L+IL++  N     I               L     +       
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 158 NSIEG--SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           ++I+     T  GLA    ++ LDLS   +    +      +L++LK L+L+ N 
Sbjct: 250 HNIKDPDQNTFAGLARS-SVRHLDLSHGFVF--SLNSRVFETLKDLKVLNLAYNK 301

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 1e-14
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 9/117 (7%)

Query: 96  QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLIL 155
            +L  LD   N    +         G   +L  L L  N++ +    +      +  L  
Sbjct: 573 VKLGLLDCVHNKVRHLEAF------GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNPITG---RFIARLGLSSLRNLKRLDLSNN 209
             N ++         ++  +  +D S N I          +      N   + LS N
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 3e-14
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 8/121 (6%)

Query: 96  QELQSLDLSENWFGGVSESK-AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
             + S+D S N  G    +               + L  N +         T + ++T+I
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 155 LCDNSIE------GSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
           L +N +                N   L  +DL  N +T         ++L  L  +D+S 
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSY 762

Query: 209 N 209
           N
Sbjct: 763 N 763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 13/129 (10%)

Query: 89  LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLT 148
            +      + +  +          E     S  NLK L  + L N      +  +L  L 
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEEL----SWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 149 SLTTLILCDNSIEG--------SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRN 200
            L +L +  N            +R          +Q+  +  N +   F A   L  +  
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVK 574

Query: 201 LKRLDLSNN 209
           L  LD  +N
Sbjct: 575 LGLLDCVHN 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 14/117 (11%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND-----SILSYLNTLTSLTT 152
           L ++DL  N    +S+         L  L  +++  N  +         S L        
Sbjct: 730 LTTIDLRFNKLTSLSDDFRA---TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

Query: 153 LILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
                N I       G+     L  L +  N I       +       L  LD+++N
Sbjct: 787 RDAEGNRILRQW-PTGITTCPSLIQLQIGSNDIRK-----VDEKLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 24/208 (11%), Positives = 45/208 (21%), Gaps = 53/208 (25%)

Query: 52  LKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGV 111
              ++            L    S    +            +   Q L   DL ++     
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD--QRLNLSDLLQDAINRN 411

Query: 112 SESKAYNSS------------------------GNLKQLKILNLGNNRLNDSI------- 140
            E K                               L +L+I+   N+             
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471

Query: 141 --LSYLNT----------LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR 188
               Y             L  LT + L +           L +L  LQ L+++ N     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISA 530

Query: 189 FIARLGLSS-------LRNLKRLDLSNN 209
              +   +           ++   +  N
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           +  L L+     G       ++ G L +LK+L+ G +    S   + +   +        
Sbjct: 325 VTGLSLAGFGAKGRVP----DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITG----RFIARLGLSSLRNLKRLDLSNN 209
           + I     K  L   + L + DL  + I      + I +    SL++ +  +L+N 
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL 178
              N  ++  L+L        +   +  LT L  L    +S   S    G   L    + 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT-PDMS 376

Query: 179 DLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216
           +   + I   +  ++ L   + L   DL  +     P 
Sbjct: 377 EERKHRIRMHYK-KMFLDYDQRLNLSDLLQDAINRNPE 413

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 2e-14
 Identities = 38/124 (30%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I  +        +  L L+ N    +          NLK L  L L  N++ D  LS L 
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLT------NLKNLGWLFLDENKIKD--LSSLK 106

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L  L +L L  N I       GL +L  L+ L L  N IT   I    LS L  L  L 
Sbjct: 107 DLKKLKSLSLEHNGI---SDINGLVHLPQLESLYLGNNKITD--IT--VLSRLTKLDTLS 159

Query: 206 LSNN 209
           L +N
Sbjct: 160 LEDN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 1e-13
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D         +  +  + +    V   +       L  +  L L  N+L D  +  L 
Sbjct: 33  VTDAVTQNELNSIDQIIANNSDIKSVQGIQ------YLPNVTKLFLNGNKLTD--IKPLT 84

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L +L  L L +N I   +    L +L+ L+ L L  N I+   I   GL  L  L+ L 
Sbjct: 85  NLKNLGWLFLDENKI---KDLSSLKDLKKLKSLSLEHNGISD--IN--GLVHLPQLESLY 137

Query: 206 LSNN 209
           L NN
Sbjct: 138 LGNN 141

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 5e-13
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D+      + L  L L EN    +S  K      +LK+LK L+L +N ++D  ++ L 
Sbjct: 77  LTDIKPLTNLKNLGWLFLDENKIKDLSSLK------DLKKLKSLSLEHNGISD--INGLV 128

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L  L +L L +N I        L+ L  L  L L  N I+   I    L+ L  L+ L 
Sbjct: 129 HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISD--IV--PLAGLTKLQNLY 181

Query: 206 LSNN 209
           LS N
Sbjct: 182 LSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.4 bits (151), Expect = 1e-11
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D++      +L+SL L  N    ++          L +L  L+L +N+++D  +  L 
Sbjct: 121 ISDINGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLEDNQISD--IVPLA 172

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG-LSSLRNLKRL 204
            LT L  L L  N I      + LA L+ L VL+L       + I     L     +K  
Sbjct: 173 GLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 205 D 205
           D
Sbjct: 230 D 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 2e-11
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
              +    NL    + D      N L S+  +I  ++ I+   + QG+  L  +  L L+
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 73

Query: 182 GNPITGRFIARLGLSSLRNLKRLDLSNN 209
           GN +T        L++L+NL  L L  N
Sbjct: 74  GNKLTDIK----PLTNLKNLGWLFLDEN 97

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 11/85 (12%)

Query: 126 LKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPI 185
           +      +  +    +   +         L   S+  + T      L  +  +  + + I
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI 55

Query: 186 TGRFIARL-GLSSLRNLKRLDLSNN 209
                  + G+  L N+ +L L+ N
Sbjct: 56  K-----SVQGIQYLPNVTKLFLNGN 75

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D+       +LQ+L LS+N    +           LK L +L L +    +  +++ +
Sbjct: 165 ISDIVPLAGLTKLQNLYLSKNHISDLRALA------GLKNLDVLELFSQECLNKPINHQS 218

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL 178
            L    T+   D S+          +     V 
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 4e-14
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + DL+       ++ L ++       +          L  L+ L +    +    +  L+
Sbjct: 56  VTDLTGIEYAHNIKDLTINNIHATNYNPIS------GLSNLERLRIMGKDVTSDKIPNLS 109

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LTSLT L +  ++ + S     +  L  +  +DLS N      +    L +L  LK L+
Sbjct: 110 GLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLN 165

Query: 206 LSNN 209
           +  +
Sbjct: 166 IQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 7e-13
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
             + +       L+ L +               +   L  L +L++ ++  +DSIL+ +N
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
           TL  + ++ L  N          L  L  L+ L++  + +        G+     L +L 
Sbjct: 134 TLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHD--YR--GIEDFPKLNQLY 187

Query: 206 LSNN 209
             + 
Sbjct: 188 AFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 11/119 (9%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           L  + L+      ++  +          +K L + N    +   + ++ L++L  L +  
Sbjct: 46  LTYITLANINVTDLTGIE------YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMG 97

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216
             +   +    L+ L  L +LD+S +      +    +++L  +  +DLS N   T   
Sbjct: 98  KDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILT--KINTLPKVNSIDLSYNGAITDIM 153

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 24/107 (22%)

Query: 122 NLKQLKILNLGNNRLND-------------------SILSYLNTLTSLTTLILCDNSIEG 162
             K      LG +   +                   + L+ +    ++  L + +     
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN 80

Query: 163 SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
                 ++ L  L+ L + G  +T   I    LS L +L  LD+S++
Sbjct: 81  Y---NPISGLSNLERLRIMGKDVTSDKIP--NLSGLTSLTLLDISHS 122

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNL-GNNRLNDSILSYLNTLTSLTTLILC 156
           L  LD+S +                L ++  ++L  N  + D  +  L TL  L +L + 
Sbjct: 114 LTLLDISHSAHDDSI----LTKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQ 167

Query: 157 DNSIEGSRTKQGLANLRYLQVLDLSGNPITG 187
            + +   R   G+ +   L  L      I G
Sbjct: 168 FDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.6 bits (168), Expect = 9e-14
 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L+   F  F  L+ L+L+EN    V       +  NL  L+ L L +NRL    L     
Sbjct: 47  LNQDEFASFPHLEELELNENIVSAVEP----GAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L++LT L + +N I          +L  L+ L++  N +   +I+    S L +L++L L
Sbjct: 103 LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV--YISHRAFSGLNSLEQLTL 159

Query: 207 SNN 209
              
Sbjct: 160 EKC 162

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +          L  L L       + +     S   L +LK+L + +    D++      
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
             +LT+L +   ++  +     + +L YL+ L+LS NPI+   I    L  L  L+ + L
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS--TIEGSMLHELLRLQEIQL 279

Query: 207 SNN 209
              
Sbjct: 280 VGG 282

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           L SL ++      V       +  +L  L+ LNL  N ++    S L+ L  L  + L  
Sbjct: 226 LTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             +           L YL+VL++SGN +T   +      S+ NL+ L L +N
Sbjct: 282 GQLA-VVEPYAFRGLNYLRVLNVSGNQLT--TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 91  LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSL 150
                  L+ L+LS N    +      +    L +L+ + L   +L          L  L
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298

Query: 151 TTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPI 185
             L +  N +  +  +    ++  L+ L L  NP+
Sbjct: 299 RVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 148 TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS 207
           T    L L  N I+ +  +   A+  +L+ L+L+ N ++   +     ++L NL+ L L 
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLR 88

Query: 208 NN 209
           +N
Sbjct: 89  SN 90

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 13/124 (10%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I DLS      +L  L++  N    ++      +  +L +LK+LN+G+N+++D  +S LN
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDIN------AVKDLTKLKMLNVGSNQISD--ISVLN 284

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L+ L +L L +N +     +  +  L  L  L LS N IT        L+SL  +   D
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITD----IRPLASLSKMDSAD 339

Query: 206 LSNN 209
            +N 
Sbjct: 340 FANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 4e-13
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 85  IILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL 144
            + DLS       L  L ++E+    V+         NL  L  L+L  N++ D  +S L
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSLSLNYNQIED--ISPL 195

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
            +LTSL       N I        +AN+  L  L +  N IT        L++L  L  L
Sbjct: 196 ASLTSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKITD----LSPLANLSQLTWL 248

Query: 205 DLSNN 209
           ++  N
Sbjct: 249 EIGTN 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 4e-13
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D+S      ++ SL+L  N               N+  L  L +  +++ D  ++ + 
Sbjct: 122 ISDISPLANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKD--VTPIA 174

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT L +L L  N IE       LA+L  L       N IT        ++++  L  L 
Sbjct: 175 NLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQITD----ITPVANMTRLNSLK 227

Query: 206 LSNN 209
           + NN
Sbjct: 228 IGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D++       L SL +  N    +S         NL QL  L +G N+++D  ++ + 
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKITDLS------PLANLSQLTWLEIGTNQISD--INAVK 262

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT L  L +  N I        L NL  L  L L+ N +    +    +  L NL  L 
Sbjct: 263 DLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDME--VIGGLTNLTTLF 317

Query: 206 LSNNY 210
           LS N+
Sbjct: 318 LSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D+      + +  L ++      +           L  L+ LNL  N++ D  +S L+
Sbjct: 34  VTDVVTQEELESITKLVVAGEKVASIQGI------EYLTNLEYLNLNGNQITD--ISPLS 85

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L  LT L +  N I        L NL  L+ L L+ + I+   I+   L++L  +  L+
Sbjct: 86  NLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNISD--IS--PLANLTKMYSLN 138

Query: 206 LSNNYGFTTPS 216
           L  N+  +  S
Sbjct: 139 LGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D+S       L       N    ++         N+ +L  L +GNN++ D  LS L 
Sbjct: 189 IEDISPLASLTSLHYFTAYVNQITDIT------PVANMTRLNSLKIGNNKITD--LSPLA 240

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L+ LT L +  N I        + +L  L++L++  N I+   I+   L++L  L  L 
Sbjct: 241 NLSQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQISD--IS--VLNNLSQLNSLF 293

Query: 206 LSNN 209
           L+NN
Sbjct: 294 LNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 14/124 (11%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           +  +        L+ L+L+ N    +S         NL +L  L +G N++  + +S L 
Sbjct: 56  VASIQGIEYLTNLEYLNLNGNQITDISPL------SNLVKLTNLYIGTNKI--TDISALQ 107

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT+L  L L +++I        LANL  +  L+L  N           LS++  L  L 
Sbjct: 108 NLTNLRELYLNEDNISDI---SPLANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLT 161

Query: 206 LSNN 209
           ++ +
Sbjct: 162 VTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D++      +L+ L++  N    +S         NL QL  L L NN+L +  +  + 
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
            LT+LTTL L  N I      + LA+L  +   D +   I 
Sbjct: 309 GLTNLTTLFLSQNHITDI---RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
             +L         +          +L +     L    + D  +     L S+T L++  
Sbjct: 2   AATLATLPAPINQIFPDA------DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             +    + QG+  L  L+ L+L+GN IT        LS+L  L  L +  N
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITD----ISPLSNLVKLTNLYIGTN 98

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 10/128 (7%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +D +       L  L LS N    V       S  N   L+ L+L NN+L   +   L  
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDN----GSLANTPHLRELHLNNNKL-VKVPGGLAD 261

Query: 147 LTSLTTLILCDNSIE-----GSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNL 201
              +  + L +N+I                      + L  NP+    I       +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 202 KRLDLSNN 209
             + L N 
Sbjct: 322 AAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
              L  L L  N    V       S   L  L  L L  N ++      L     L  L 
Sbjct: 191 PPSLTELHLDGNKITKVDA----ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT----GRFIARLGLSSLRNLKRLDLSNNY 210
           L +N +   +   GLA+ +Y+QV+ L  N I+      F      +   +   + L +N 
Sbjct: 247 LNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 77  PNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL 126
           P +      +LDL            F   + L +L L  N    +    A+     L +L
Sbjct: 47  PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFA---PLVKL 102

Query: 127 KILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
           + L L  N+L   +        +L  L + +N I     K     L  + V++L  NP+ 
Sbjct: 103 ERLYLSKNQL-KELPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK 158

Query: 187 GRFIARLGLSSLRNLKRLDLSNN 209
              I       ++ L  + +++ 
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADT 181

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-LNTLTSL 150
           F P  +L+ L LS+N    +            K L+ L +  N +   +     N L  +
Sbjct: 96  FAPLVKLERLYLSKNQLKELP-------EKMPKTLQELRVHENEIT-KVRKSVFNGLNQM 147

Query: 151 TTLILCDNSIEGSRTKQG-LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             + L  N ++ S  + G    ++ L  + ++   IT      +      +L  L L  N
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-----TIPQGLPPSLTELHLDGN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 5e-13
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 10/124 (8%)

Query: 87  LDLSLFPPFQELQSLDLSE-NWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           +    F     L+ LDL E      +SE     +   L  L+ LNL    L +  +  L 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISE----GAFEGLSNLRYLNLAMCNLRE--IPNLT 204

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L  L  L L  N +  +        L +LQ L +  + I    I R    +L++L  ++
Sbjct: 205 PLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ--VIERNAFDNLQSLVEIN 261

Query: 206 LSNN 209
           L++N
Sbjct: 262 LAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-LN 145
           +    F    +L+ L L  N    +       +   +  L+ L+LG  +    I      
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSY----AFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L++L  L L   ++   R    L  L  L  LDLSGN ++   I       L +L++L 
Sbjct: 183 GLSNLRYLNLAMCNL---REIPNLTPLIKLDELDLSGNHLS--AIRPGSFQGLMHLQKLW 237

Query: 206 LSNN 209
           +  +
Sbjct: 238 MIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 89  LSLFPP--FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L   P       + L+L EN    +      NS  +L+ L+IL L  N +    +   N 
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIEIGAFNG 110

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L +L TL L DN +  +        L  L+ L L  NPI    I     + + +L+RLDL
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE--SIPSYAFNRIPSLRRLDL 167

Query: 207 SNN 209
              
Sbjct: 168 GEL 170

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-LNTLTSLTTLILC 156
           L+ L+L+      +       +   L +L  L+L  N L  +I       L  L  L + 
Sbjct: 187 LRYLNLAMCNLREI------PNLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMI 239

Query: 157 DNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            + I+    +    NL+ L  ++L+ N +T   +     + L +L+R+ L +N
Sbjct: 240 QSQIQ-VIERNAFDNLQSLVEINLAHNNLT--LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 12/126 (9%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY--L 144
           + ++ F   + L+ L LS N    +       +   L  L  L L +NRL  + +     
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRTIEI----GAFNGLANLNTLELFDNRL--TTIPNGAF 132

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSG-NPITGRFIARLGLSSLRNLKR 203
             L+ L  L L +N IE S        +  L+ LDL     ++  +I+      L NL+ 
Sbjct: 133 VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS--YISEGAFEGLSNLRY 189

Query: 204 LDLSNN 209
           L+L+  
Sbjct: 190 LNLAMC 195

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + ++    P  +L  LDLS N    +       S   L  L+ L +  +++     +  +
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPI 185
            L SL  + L  N++           L +L+ + L  NP 
Sbjct: 253 NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 6e-13
 Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 87  LDLSLFPPFQELQSLDLSE-NWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           +    F     L  LDL E      +SE     +   L  LK LNLG   + D  +  L 
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISE----GAFEGLFNLKYLNLGMCNIKD--MPNLT 215

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L  L  L +  N             L  L+ L +  + ++   I R     L +L  L+
Sbjct: 216 PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS--LIERNAFDGLASLVELN 272

Query: 206 LSNN 209
           L++N
Sbjct: 273 LAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-LN 145
           +    F    +L+ L L  N    +       +   +  L  L+LG  +  + I      
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L +L  L L   +I   +    L  L  L+ L++SGN      I       L +LK+L 
Sbjct: 194 GLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSGNHFP--EIRPGSFHGLSSLKKLW 248

Query: 206 LSNN 209
           + N+
Sbjct: 249 VMNS 252

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 8e-12
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 13/125 (10%)

Query: 89  LSLFPP--FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY--L 144
           LS  P       + L+L EN    +      ++  +L  L++L LG N +    +     
Sbjct: 66  LSEVPQGIPSNTRYLNLMENNIQMIQA----DTFRHLHHLEVLQLGRNSI--RQIEVGAF 119

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
           N L SL TL L DN +           L  L+ L L  NPI    I     + + +L RL
Sbjct: 120 NGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE--SIPSYAFNRVPSLMRL 176

Query: 205 DLSNN 209
           DL   
Sbjct: 177 DLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +    F     L+ L+L       +           L  L+ L +  N   +      + 
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPNLT------PLVGLEELEMSGNHFPEIRPGSFHG 240

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L+SL  L + ++ +     +     L  L  L+L+ N ++   +     + LR L  L L
Sbjct: 241 LSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS--SLPHDLFTPLRYLVELHL 297

Query: 207 SNN 209
            +N
Sbjct: 298 HHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 33/149 (22%), Positives = 48/149 (32%), Gaps = 28/149 (18%)

Query: 77  PNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL 126
           P         L+L            F     L+ L L  N    +       +   L  L
Sbjct: 70  PQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV----GAFNGLASL 125

Query: 127 KILNLGNNRLNDSILSYLNT-----LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
             L L +N      L+ + +     L+ L  L L +N IE S        +  L  LDL 
Sbjct: 126 NTLELFDNW-----LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG 179

Query: 182 G-NPITGRFIARLGLSSLRNLKRLDLSNN 209
               +   +I+      L NLK L+L   
Sbjct: 180 ELKKLE--YISEGAFEGLFNLKYLNLGMC 206

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D+    P   L+ L++S N F  +       S   L  LK L + N++++    +  +
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVSLIERNAFD 263

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPI 185
            L SL  L L  N++  S        LRYL  L L  NP 
Sbjct: 264 GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
               SL      ++ LDLS N    +S            +L++LNL +N L +     L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYE--TLDLE 77

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
           +L++L TL L +N +      Q L     ++ L  + N I+     R+  S  +  K + 
Sbjct: 78  SLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-----RVSCSRGQGKKNIY 126

Query: 206 LSNN 209
           L+NN
Sbjct: 127 LANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 89  LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLT 148
           +        +++L  + N    VS           +  K + L NN++           +
Sbjct: 92  VQELLVGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL-GLSSLRNLKRLDLS 207
            +  L L  N I+     +  A+   L+ L+L  N I       + G      LK LDLS
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-----DVKGQVVFAKLKTLDLS 199

Query: 208 NN 209
           +N
Sbjct: 200 SN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 14/119 (11%)

Query: 91  LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSL 150
           +       +   ++++       S       +   +K L+L  N L+    + L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 151 TTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             L L  N +  +     L +L  L+ LDL+ N +         L    +++ L  +NN
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANN 109

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
            L      L+ L+L  N+   V             +LK L+L +N+L   +     +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQV------VFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           +T + L +N +     ++ L   + L+  DL GN        R   S  + ++ +     
Sbjct: 216 VTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTV 272

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I ++S       L +L+L+EN    +S         NLK L  L L  N ++D  +S ++
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDISPI------SNLKNLTYLTLYFNNISD--ISPVS 328

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
           +LT L  L   +N +        LANL  +  L    N I+        L++L  + +L 
Sbjct: 329 SLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISD----LTPLANLTRITQLG 381

Query: 206 LSNN 209
           L++ 
Sbjct: 382 LNDQ 385

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D+S+      L+SL  + N    ++        G L  L  L+L  N+L D  +  L 
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITPL------GILTNLDELSLNGNQLKD--IGTLA 240

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
           +LT+LT L L +N I        L+ L  L  L L  N I+        L+ L  L  L+
Sbjct: 241 SLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQISNIS----PLAGLTALTNLE 293

Query: 206 LSNN 209
           L+ N
Sbjct: 294 LNEN 297

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 7e-12
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I  +        L  ++ S N    ++         NL +L  + + NN++ D  ++ L 
Sbjct: 58  IKSIDGVEYLNNLTQINFSNNQLTDITPL------KNLTKLVDILMNNNQIAD--ITPLA 109

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT+LT L L +N I        L NL  L  L+LS N I+   I+   LS L +L++L 
Sbjct: 110 NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD--IS--ALSGLTSLQQLS 162

Query: 206 LSNN 209
             N 
Sbjct: 163 FGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I  +       E     L +             S  +L Q+  L      +    +  + 
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTV------SQTDLDQVTTLQADRLGIKS--IDGVE 65

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L +LT +   +N +        L NL  L  + ++ N I         L++L NL  L 
Sbjct: 66  YLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADIT----PLANLTNLTGLT 118

Query: 206 LSNN 209
           L NN
Sbjct: 119 LFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D+        L  L+LS N    +S      +   L  L+ L+ GN   +   L  L 
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQVTD---LKPLA 174

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT+L  L +  N +        LA L  L+ L  + N I+        L  L NL  L 
Sbjct: 175 NLTTLERLDISSNKV---SDISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELS 227

Query: 206 LSNN 209
           L+ N
Sbjct: 228 LNGN 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 16/125 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D+S     + L  L L  N    +S         +L +L+ L   NN+++D  +S L 
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPV------SSLTKLQRLFFYNNKVSD--VSSLA 350

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT++  L    N I        LANL  +  L L+    T        ++   N+   +
Sbjct: 351 NLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQAWTN-----APVNYKANVSIPN 402

Query: 206 LSNNY 210
              N 
Sbjct: 403 TVKNV 407

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 12/101 (11%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D+S       +  L    N    ++         NL ++  L L +    ++ ++Y  
Sbjct: 343 VSDVSSLANLTNINWLSAGHNQISDLTPL------ANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
            ++   T+     ++        +++       D++ N  +
Sbjct: 397 NVSIPNTVKNVTGALI---APATISDGGSYTEPDITWNLPS 434

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 12/124 (9%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D +    +  L  +DLS N    +      +    +++L+ L + NNRL  ++  Y  
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            + +L  L L  N +     ++       L+ L L  N I       L LS+   LK L 
Sbjct: 293 PIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIV-----TLKLSTHHTLKNLT 345

Query: 206 LSNN 209
           LS+N
Sbjct: 346 LSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 21/136 (15%), Positives = 47/136 (34%), Gaps = 13/136 (9%)

Query: 74  SSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGN 133
                +   G   + L+        + +    +    +          + +Q+++LNL +
Sbjct: 29  DMQTQDVYFGFEDITLN------NQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLND 78

Query: 134 NRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL 193
            ++ +          ++  L +  N+I          N+  L VL L  N ++   + R 
Sbjct: 79  LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS--SLPRG 135

Query: 194 GLSSLRNLKRLDLSNN 209
              +   L  L +SNN
Sbjct: 136 IFHNTPKLTTLSMSNN 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
             EL  L L  N     +         N   L  ++L  N L   +      +  L  L 
Sbjct: 225 NVELTILKLQHNNLTDTA------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           + +N +           +  L+VLDLS N +    + R        L+ L L +N
Sbjct: 279 ISNNRL--VALNLYGQPIPTLKVLDLSHNHLL--HVER-NQPQFDRLENLYLDHN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 18/123 (14%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L   +F    +L +L +S N    + +    ++      L+ L L +NRL    +  L+ 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTH--VD-LSL 184

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           + SL    +  N +        LA    ++ LD S N I       +       L  L L
Sbjct: 185 IPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN-----VVRGPVNVELTILKL 233

Query: 207 SNN 209
            +N
Sbjct: 234 QHN 236

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
             P   L+ LDLS N    V  +          +L+ L L +N +    L  L+T  +L 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSI--VTLK-LSTHHTLK 342

Query: 152 TLILCDNSIEGSRTKQGLANLRYLQVLDL 180
            L L  N  + +  +    N+    V D 
Sbjct: 343 NLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSIL---SYLNT 146
           +++   ++++ + +  +    V      + S +LK L+ L+L  N + +  L   +    
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPC----SFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 147 LTSLTTLILCDNSIEG-SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
             SL TL+L  N +    +T + L  L+ L  LD+S N                 ++ L+
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH---PMPDSCQWPEKMRFLN 416

Query: 206 LSNN 209
           LS+ 
Sbjct: 417 LSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 15/144 (10%)

Query: 77  PNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL 126
           P+  +  +  LDLS                 LQ L L  +    +      ++  +L  L
Sbjct: 21  PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSL 76

Query: 127 KILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
           + L+L +N L+    S+   L+SL  L L  N  +         NL  LQ L +      
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 187 GRFIARLGLSSLRNLKRLDLSNNY 210
              I R+  + L +L  L++    
Sbjct: 137 SE-IRRIDFAGLTSLNELEIKALS 159

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           ++SLDLS N    +              L++L L ++R+N        +L SL  L L D
Sbjct: 28  MKSLDLSFNKITYIGH----GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214
           N +  S +      L  L+ L+L GNP            +L NL+ L + N   F+ 
Sbjct: 84  NHLS-SLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSE 138

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND-SILSYLN 145
           ++   F     L+ LDLS+N    +S S      G L  LK LNL  N      + S   
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT+L TL + +        +   A L  L  L++    +         L S+R++  L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLT 178

Query: 206 LSNN 209
           L  +
Sbjct: 179 LHLS 182

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND--SILSYLNTL 147
           S     + L+ LDLSEN         +    G    L+ L L  N L         L TL
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNS-ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 148 TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS 207
            +LT+L +  N+               ++ L+LS   I       +     + L+ LD+S
Sbjct: 387 KNLTSLDISRNTFHPMPD--SCQWPEKMRFLNLSSTGIR-----VVKTCIPQTLEVLDVS 439

Query: 208 NNY 210
           NN 
Sbjct: 440 NNN 442

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 27/137 (19%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN---DSILSYLNT 146
            +    + L SLD+S N F  +      +S    ++++ LNL +  +      I   L  
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMP-----DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435

Query: 147 L--------------TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIAR 192
           L                L  L +  N +   +T    +    L V+ +S N +    +  
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKL---KTLPDASLFPVLLVMKISRNQLK--SVPD 490

Query: 193 LGLSSLRNLKRLDLSNN 209
                L +L+++ L  N
Sbjct: 491 GIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
            Q L+ LD+S N     S          L +L+ L +  N+L    L   +    L  + 
Sbjct: 430 PQTLEVLDVSNNNLDSFSL--------FLPRLQELYISRNKL--KTLPDASLFPVLLVMK 479

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPI 185
           +  N ++ S        L  LQ + L  NP 
Sbjct: 480 ISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 15/152 (9%)

Query: 66  LNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQ 125
           L  L+  +  N    S+    +    F     L  L++               S  +++ 
Sbjct: 122 LTNLQTLRIGNVETFSE----IRRIDFAGLTSLNELEIKALSLRNYQS----QSLKSIRD 173

Query: 126 LKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEG--SRTKQGLANLRYLQVLDLSGN 183
           +  L L  +     +  + + L+S+  L L D ++                ++ L   G+
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 184 PITGRFIARL-----GLSSLRNLKRLDLSNNY 210
            +T      L      +  L  ++  D + N 
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.6 bits (157), Expect = 2e-12
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 12/124 (9%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D +    +  L  +DLS N    +      +    +++L+ L + NNRL  ++  Y  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            + +L  L L  N +     ++       L+ L L  N I       L LS+   LK L 
Sbjct: 299 PIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIV-----TLKLSTHHTLKNLT 351

Query: 206 LSNN 209
           LS+N
Sbjct: 352 LSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
             EL  L L  N     +         N   L  ++L  N L   +      +  L  L 
Sbjct: 231 NVELTILKLQHNNLTDTA------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           + +N +           +  L+VLDLS N +    + R        L+ L L +N
Sbjct: 285 ISNNRL--VALNLYGQPIPTLKVLDLSHNHLL--HVER-NQPQFDRLENLYLDHN 334

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 2e-10
 Identities = 21/136 (15%), Positives = 47/136 (34%), Gaps = 13/136 (9%)

Query: 74  SSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGN 133
                +   G   + L+        + +    +    +          + +Q+++LNL +
Sbjct: 35  DMQTQDVYFGFEDITLN------NQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLND 84

Query: 134 NRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL 193
            ++ +          ++  L +  N+I          N+  L VL L  N ++   + R 
Sbjct: 85  LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS--SLPRG 141

Query: 194 GLSSLRNLKRLDLSNN 209
              +   L  L +SNN
Sbjct: 142 IFHNTPKLTTLSMSNN 157

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 6e-09
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 18/123 (14%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L   +F    +L +L +S N    + +    ++      L+ L L +NRL    +  L+ 
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTH--VD-LSL 190

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           + SL    +  N +        LA    ++ LD S N I       +       L  L L
Sbjct: 191 IPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN-----VVRGPVNVELTILKL 239

Query: 207 SNN 209
            +N
Sbjct: 240 QHN 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
             P   L+ LDLS N    V  +          +L+ L L +N +    L  L+T  +L 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSI--VTLK-LSTHHTLK 348

Query: 152 TLILCDNSIEGSRTKQGLANLRYLQVLDLSGN 183
            L L  N  + +  +    N+    V D   +
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           ++L     + +L  L L  N    +       S   L  L+ L+L NN+L   + + L  
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLDNNKL-SRVPAGLPD 262

Query: 147 LTSLTTLILCDNSIE--GSRTKQGL---ANLRYLQVLDLSGNPITGRFIARLGLSSLRNL 201
           L  L  + L  N+I   G      +       Y   + L  NP+    +       + + 
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 202 KRLDLSNN 209
             +   N 
Sbjct: 323 LAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
            + L  L L  N    +             +L  L LG+N++       L+ L +L  L 
Sbjct: 192 PETLNELHLDHNKIQAIEL----EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT----GRFIARLGLSSLRNLKRLDLSNNY 210
           L +N +  SR   GL +L+ LQV+ L  N IT      F              + L NN 
Sbjct: 248 LDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
             +   LDL  N    + +    +    L+ L  L L NN+++       + L  L  L 
Sbjct: 53  SPDTTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           +  N +              L  L +  N I    + +   S LRN+  +++  N
Sbjct: 109 ISKNHLVEIPPNL----PSSLVELRIHDNRIR--KVPKGVFSGLRNMNCIEMGGN 157

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 40/164 (24%)

Query: 77  PNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL 126
           P   S    +LDL            F   Q L +L L  N    +   KA++    L++L
Sbjct: 49  PKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFS---PLRKL 104

Query: 127 KILNLGNNRLND------SILSYLN---------------TLTSLTTLILCDNSIEGSRT 165
           + L +  N L +      S L  L                 L ++  + +  N +E S  
Sbjct: 105 QKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           + G  +   L  L +S   +T      +       L  L L +N
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-----GIPKDLPETLNELHLDHN 203

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 38/124 (30%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I  +        +  L L+ N    +          NLK L  L L  N++ D  LS L 
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLA------NLKNLGWLFLDENKVKD--LSSLK 109

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L  L +L L  N I       GL +L  L+ L L  N IT   I    LS L  L  L 
Sbjct: 110 DLKKLKSLSLEHNGI---SDINGLVHLPQLESLYLGNNKITD--IT--VLSRLTKLDTLS 162

Query: 206 LSNN 209
           L +N
Sbjct: 163 LEDN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D+      + L  L L EN      + K  +S  +LK+LK L+L +N ++D  ++ L 
Sbjct: 80  LTDIKPLANLKNLGWLFLDEN------KVKDLSSLKDLKKLKSLSLEHNGISD--INGLV 131

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L  L +L L +N I        L+ L  L  L L  N I+   I    L+ L  L+ L 
Sbjct: 132 HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISD--IV--PLAGLTKLQNLY 184

Query: 206 LSNN 209
           LS N
Sbjct: 185 LSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D         +  +  + +    V   +       L  +  L L  N+L D  +  L 
Sbjct: 36  VTDAVTQNELNSIDQIIANNSDIKSVQGIQ------YLPNVTKLFLNGNKLTD--IKPLA 87

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L +L  L L +N +   +    L +L+ L+ L L  N I+   I   GL  L  L+ L 
Sbjct: 88  NLKNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGISD--IN--GLVHLPQLESLY 140

Query: 206 LSNN 209
           L NN
Sbjct: 141 LGNN 144

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
              +    NL    + D      N L S+  +I  ++ I+   + QG+  L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 182 GNPITGRFIARLGLSSLRNLKRLDLSNN 209
           GN +T        L++L+NL  L L  N
Sbjct: 77  GNKLTDIK----PLANLKNLGWLFLDEN 100

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D++      +L+SL L  N    ++          L +L  L+L +N+++D  +  L 
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLEDNQISD--IVPLA 175

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL-GLSSLRNLKRL 204
            LT L  L L  N I      + LA L+ L VL+L       + I     L     +K  
Sbjct: 176 GLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 205 D 205
           D
Sbjct: 233 D 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 11/80 (13%)

Query: 131 LGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI 190
                +    +   +         L   S+  + T      L  +  +  + + I     
Sbjct: 9   TVPTPIKQ--IFSDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK---- 59

Query: 191 ARL-GLSSLRNLKRLDLSNN 209
             + G+  L N+ +L L+ N
Sbjct: 60  -SVQGIQYLPNVTKLFLNGN 78

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 2e-12
 Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 93  PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTT 152
             + +++ L L+      +           L  +  L+L +NRL  ++   L  L  L  
Sbjct: 438 MEYADVRVLHLAHKDLTVLC------HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490

Query: 153 LILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L   DN++E      G+ANL  LQ L L  N +     A   L S   L  L+L  N
Sbjct: 491 LQASDNALE---NVDGVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 2e-12
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
              +  LDLS N            +   L+ L++L   +N L +  +  +  L  L  L+
Sbjct: 462 LLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELL 514

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS-LRNLKRLD 205
           LC+N ++ S   Q L +   L +L+L GN +      +  L+  L ++  + 
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.9 bits (152), Expect = 8e-12
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 14/153 (9%)

Query: 62  TELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYN--- 118
            EL         +      +   ++ +      F  L+++D     +     SK      
Sbjct: 375 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS 434

Query: 119 -SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQV 177
                   +++L+L +  L  ++L +L  L  +T L L  N +        LA LR L+V
Sbjct: 435 VLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEV 490

Query: 178 LDLSGNPITGRFIARL-GLSSLRNLKRLDLSNN 209
           L  S N +       + G+++L  L+ L L NN
Sbjct: 491 LQASDNALE-----NVDGVANLPRLQELLLCNN 518

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 15/156 (9%)

Query: 60  RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNS 119
              ELS+ +         +       + +L     +  L  + L       + E +    
Sbjct: 352 FRCELSVEKSTVL----QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 120 SGNLKQLKILNLGNNRLNDSILSY-----LNTLTSLTTLILCDNSIEGSRTKQGLANLRY 174
              LK +  +         S               +  L L    +        L  L  
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT---VLCHLEQLLL 464

Query: 175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           +  LDLS N +    +    L++LR L+ L  S+N 
Sbjct: 465 VTHLDLSHNRLRA--LPP-ALAALRCLEVLQASDNA 497

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 21/132 (15%)

Query: 98  LQSLDLSENWFG---------GVSESKAYNSSGNLKQLKILNLGNNRLND----SILSYL 144
           L+ L L  N  G          + E      + N   L+ +  G NRL +          
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 145 NTLTSLTTLILCDNSI--EGSRT--KQGLANLRYLQVLDLSGNPIT---GRFIARLGLSS 197
            +   L T+ +  N I  EG      +GLA  + L+VLDL  N  T      +A   L S
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKS 242

Query: 198 LRNLKRLDLSNN 209
             NL+ L L++ 
Sbjct: 243 WPNLRELGLNDC 254

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 15/127 (11%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND----SILSYLNTLTSLTTL 153
           ++   L  +      E   +        +K + L  N +       +   + +   L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 154 ILCDNSIEGSRTK---------QGLANLRYLQVLDLSGNPITGRFIARLG--LSSLRNLK 202
              D      + +         Q L     L  + LS N         L   LS    L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 203 RLDLSNN 209
            L L NN
Sbjct: 126 HLYLHNN 132

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 98  LQSLDLSENWFG--GVSESKAYNSSGNLKQLKILNLGNNRLND----SILSYLNTLTSLT 151
           L ++ + +N     G+        +   ++LK+L+L +N        ++   L +  +L 
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 152 TLILCDNSIEGSRTKQGLANL------RYLQVLDLSGNPIT---GRFIARLGLSSLRNLK 202
            L L D  +  +R    + +         LQ L L  N I     R +  +    + +L 
Sbjct: 248 ELGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306

Query: 203 RLDLSNN 209
            L+L+ N
Sbjct: 307 FLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 12/124 (9%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS-----ILSYLNTLTSLTT 152
           L+S+    N     S  +   +  + + L  + +  N +        +L  L     L  
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 153 LILCDNSI--EGSRT-KQGLANLRYLQVLDLSGNPIT---GRFIAR-LGLSSLRNLKRLD 205
           L L DN+    GS      L +   L+ L L+   ++      +           L+ L 
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280

Query: 206 LSNN 209
           L  N
Sbjct: 281 LQYN 284

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND----SILSYLNTL--TSLT 151
           L+ LDL +N F  +  S    +  +   L+ L L +  L+     +++   + L    L 
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277

Query: 152 TLILCDNSIEGSRTKQGLA-----NLRYLQVLDLSGNPIT--GRFIARL--GLSSLRNLK 202
           TL L  N I      + L       +  L  L+L+GN  +     +  +    S+    +
Sbjct: 278 TLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 336

Query: 203 RLDLSNN 209
             +L + 
Sbjct: 337 LDELDDM 343

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 5e-12
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 17/123 (13%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
              SL      ++ LDLS N    +S            +L++LNL +N L +     L +
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L++L TL L +N +      Q L     ++ L  + N I+     R+  S  +  K + L
Sbjct: 79  LSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-----RVSCSRGQGKKNIYL 127

Query: 207 SNN 209
           +NN
Sbjct: 128 ANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 6e-12
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 89  LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLT 148
           +        +++L  + N    VS           +  K + L NN++           +
Sbjct: 92  VQELLVGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
            +  L L  N I+     +  A+   L+ L+L  N I        G      LK LDLS+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY----DVKGQVVFAKLKTLDLSS 200

Query: 209 N 209
           N
Sbjct: 201 N 201

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 14/119 (11%)

Query: 91  LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSL 150
           +       +   ++++       S       +   +K L+L  N L+    + L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 151 TTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             L L  N +  +     L +L  L+ LDL+ N +         L    +++ L  +NN
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANN 109

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
            L      L+ L+L  N+   V             +LK L+L +N+L   +     +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQ------VVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           +T + L +N +     ++ L   + L+  DL GN        R   S  + ++ +     
Sbjct: 216 VTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 24/140 (17%)

Query: 92  FPPFQELQSLDLSEN---------WFGGVSESK----------AYNSSGNLKQLKILNLG 132
               Q L+  DL  N         +F      +             +        + + G
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 133 NNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQ---GLANLRYLQVLDLSGNPITGRF 189
                D    + + L +L        S +GS T++      N    + +D          
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT-- 350

Query: 190 IARLGLSSLRNLKRLDLSNN 209
           +        +    L+    
Sbjct: 351 VIDQVTLRKQAKITLEQKKK 370

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 29/123 (23%), Positives = 40/123 (32%), Gaps = 7/123 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +D + F     L +L L       +           L  L+ L L +N L          
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L +LT L L  N I  S  ++    L  L  L L  N +    +       L  L  L L
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYL 208

Query: 207 SNN 209
             N
Sbjct: 209 FAN 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
           F     L+ LDLS+N      +   ++    L +L  L+L    L +        L +L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 152 TLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            L L DN+++ +       +L  L  L L GN I+   +       L +L RL L  N
Sbjct: 133 YLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQN 187

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
               Q + L  N    V       S    + L IL L +N L     +    L  L  L 
Sbjct: 31  PAASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L DN+   S        L  L  L L    +    +       L  L+ L L +N
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDN 139

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 16/128 (12%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           +  + F   + L  L L  N    +       +   L  L+ L+L +N    + L  ++ 
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDA----AAFTGLALLEQLDLSDN----AQLRSVDP 98

Query: 147 -----LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNL 201
                L  L TL L    ++          L  LQ L L  N +    +       L NL
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ--ALPDDTFRDLGNL 155

Query: 202 KRLDLSNN 209
             L L  N
Sbjct: 156 THLFLHGN 163

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L   LF     LQ L L +N    + +    ++  +L  L  L L  NR++         
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L SL  L+L  N +          +L  L  L L  N ++   +    L+ LR L+ L L
Sbjct: 176 LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQYLRL 232

Query: 207 SNN 209
           ++N
Sbjct: 233 NDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L    F     L  L L  N    V E     +   L  L  L L  NR+          
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184
           L  L TL L  N++  +   + LA LR LQ L L+ NP
Sbjct: 200 LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 148 TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS 207
            +   + L  N I            R L +L L  N +    I     + L  L++LDLS
Sbjct: 32  AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLS 88

Query: 208 NNYGFTT 214
           +N    +
Sbjct: 89  DNAQLRS 95

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 85  IILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL 144
                 L   F  L+ L L       VS      +   L +LK L L  NR+   +    
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLISVS------NLPKLPKLKKLELSENRIFGGLDMLA 91

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG-LSSLRNLKR 203
             L +LT L L  N ++   T + L  L  L+ LDL    +T     R      L  L  
Sbjct: 92  EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151

Query: 204 LDLSNN 209
           LD  + 
Sbjct: 152 LDGYDR 157

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D++       LQ L L  N    +S          L  L+ L++GN +++D  L+ L 
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLA------GLTNLQYLSIGNAQVSD--LTPLA 170

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L+ LTTL   DN I        LA+L  L  + L  N I+        L++  NL  + 
Sbjct: 171 NLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISD----VSPLANTSNLFIVT 223

Query: 206 LSNN 209
           L+N 
Sbjct: 224 LTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + D         + +L         +           L  L  L L +N++ D  L+ L 
Sbjct: 31  VTDTVTQADLDGITTLSAFGTGVTTIEGV------QYLNNLIGLELKDNQITD--LAPLK 82

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT +T L L  N +   +    +A L+ ++ LDL+   IT   +    L+ L NL+ L 
Sbjct: 83  NLTKITELELSGNPL---KNVSAIAGLQSIKTLDLTSTQITD--VT--PLAGLSNLQVLY 135

Query: 206 LSNN 209
           L  N
Sbjct: 136 LDLN 139

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
            L     +  G + + D        L  +TTL      +    T +G+  L  L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 182 GNPITGRFIARLGLSSLRNLKRLDLSNN 209
            N IT   +A   L +L  +  L+LS N
Sbjct: 72  DNQITD--LA--PLKNLTKITELELSGN 95

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I ++S       LQ L +       ++         NL +L  L   +N+++D  +S L 
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLA------NLSKLTTLKADDNKISD--ISPLA 192

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
           +L +L  + L +N I        LAN   L ++ L+   IT
Sbjct: 193 SLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 133 NNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIAR 192
              +N   +     L +   +    +++  + T    A+L  +  L   G  +T   I  
Sbjct: 6   PTAINV--IFPDPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT--IE- 57

Query: 193 LGLSSLRNLKRLDLSNN 209
            G+  L NL  L+L +N
Sbjct: 58  -GVQYLNNLIGLELKDN 73

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 8/126 (6%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN---DSILSY 143
                   F  L +LDLS+N   G     +         L++L L N  +        + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 144 LNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKR 203
                 L  L L  NS+  +           L  L+LS   +      ++       L  
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-----QVPKGLPAKLSV 278

Query: 204 LDLSNN 209
           LDLS N
Sbjct: 279 LDLSYN 284

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 78  NNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137
           N   +    +  +L     +LQ LDLS N     + +    S     QL  LNL    L 
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGL- 265

Query: 138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG 187
             +   L     L+ L L  N ++ + +   L  +     L L GNP   
Sbjct: 266 KQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQV---GNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY---LNTLTSLTTLI 154
            +SL+         ++   +        LK L +   R+   IL     +  ++ L  L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 155 LCDNSIEGSRTKQGL-ANLRYLQVLDLSGNPITGR--FIARLGLSSLRNLKRLDLSNNYG 211
           L +  + G+     L A    L +L+L       R  ++A L       LK L ++  + 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 212 FTTPSQ 217
                +
Sbjct: 162 LNFSCE 167

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 85  IILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL 144
                 L   F+EL+ L         ++          L +LK L L +NR++  +    
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLTSIANLP------KLNKLKKLELSDNRVSGGLEVLA 84

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG-LSSLRNLKR 203
               +LT L L  N I+   T + L  L  L+ LDL    +T     R      L  L  
Sbjct: 85  EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144

Query: 204 LD 205
           LD
Sbjct: 145 LD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
             +++ L L  +     +E K    +   ++L+ L+  N  L    ++ L  L  L  L 
Sbjct: 16  PSDVKELVLDNS---RSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLE 70

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG-LSSLRNLKRLDLSNN 209
           L DN + G            L  L+LSGN I    ++ +  L  L NLK LDL N 
Sbjct: 71  LSDNRVSGGLEVLA-EKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL-GLSSLRNLKRL 204
           T + +  L+L ++     + +        L+ L      +T      +  L  L  LK+L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKL 69

Query: 205 DLSNN 209
           +LS+N
Sbjct: 70  ELSDN 74

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 8e-11
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L+ + F   Q+LQ L + +   G V  +  +     L  L IL L  N+         N 
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR---GLSSLIILKLDYNQFLQLETGAFNG 101

Query: 147 LTSLTTLILCDNSIEGSRTKQGL-ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
           L +L  L L   +++G+         L  L++L L  N I  +        ++R    LD
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLD 160

Query: 206 LSNN 209
           L+ N
Sbjct: 161 LTFN 164

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-NTLTSLTTLILC 156
           +  +DLS N    ++E+    S   L+ L+ L +        I +     L+SL  L L 
Sbjct: 32  VNYVDLSLNSIAELNET----SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 157 DNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            N             L  L+VL L+   + G  ++      L +L+ L L +N
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 20/174 (11%)

Query: 48  DWERLKCNATAGRVTELSLNRLKH-YKSSNPNNSSDGVIILDLS----------LFPPFQ 96
             + L  + +    +       K     +     + GV   DLS          +F  F 
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299

Query: 97  ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-NTLTSLTTLIL 155
           +L+ L L++N    + +    N+   L  L  LNL  N L  SI S +   L  L  L L
Sbjct: 300 DLEQLTLAQNEINKIDD----NAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354

Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
             N I  +   Q    L  L+ L L  N +    +       L +L+++ L  N
Sbjct: 355 SYNHIR-ALGDQSFLGLPNLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 14/166 (8%)

Query: 51  RLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFP-------PFQELQSLDL 103
             K +        ++  +++    SN  N        +                +++ DL
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 104 SENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGS 163
           S++    + +    +   +   L+ L L  N +N    +    LT L  L L  N + GS
Sbjct: 283 SKSKIFALLK----SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GS 337

Query: 164 RTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
              +   NL  L+VLDLS N I    +       L NLK L L  N
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRA--LGDQSFLGLPNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 85  IILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN---DSIL 141
            +L  + F P   L+ L L +N    +  +  +    N+++  +L+L  N++    +  L
Sbjct: 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL---NMRRFHVLDLTFNKVKSICEEDL 174

Query: 142 SYLNTLTSLTTLILCDNSIE-------GSRTKQGLANLRYLQVLDLSGNPIT----GRFI 190
                    T L L   +++       G            +  LDLSGN        RF 
Sbjct: 175 LNF-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 191 ARLGLSSLRNLKRLDLSNNYGFTTPSQ 217
             +  + +++L   +  N       + 
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTN 260

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 97  ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILC 156
            L  L+LS+N+ G +          NL +L++L+L  N +          L +L  L L 
Sbjct: 324 HLLKLNLSQNFLGSIDS----RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379

Query: 157 DNSIEGSRTKQGLANLRYLQVLDLSGNP 184
            N ++ S        L  LQ + L  NP
Sbjct: 380 TNQLK-SVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSG------NLKQLKILNLGNNRLNDSILSY 143
           S F   +    LDL+ N    + E    N  G       L  + + ++    L       
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 144 LNTLTSLTTLILCDNSIEGSRTKQ--GLANLRYLQVLDLSGNPITGRFIARLGLSSLRN- 200
               TS+TTL L  N  + S  K+         +Q L LS +   G            N 
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 201 ---------LKRLDLSNN 209
                    +K  DLS +
Sbjct: 268 TFKGLEASGVKTCDLSKS 285

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 14/133 (10%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSIL--SYL 144
           L+   F     L+ L L++    G   S   N    L  L++L L +N +   I   S+ 
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNI-KKIQPASFF 150

Query: 145 NTLTSLTTLILCDNSIEGSRTK--QGLANLRYLQVLDLSGNPITGRFIARLGLSS----- 197
             +     L L  N ++    +            +L LS   +       LG        
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKH-FTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 198 -LRNLKRLDLSNN 209
              ++  LDLS N
Sbjct: 210 KNTSITTLDLSGN 222

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 78  NNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137
              SD        ++  F  +   + + +     +          +     L+  NN L 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSG----TRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 138 DSILSYLNTLTSLTTLILCDNSIEG-SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLS 196
           D++      LT L TLIL  N ++  S+  +    ++ LQ LD+S N ++         S
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CS 396

Query: 197 SLRNLKRLDLSNN 209
             ++L  L++S+N
Sbjct: 397 WTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN--DSILSY 143
           ++ +           LD S N          + + G+L +L+ L L  N+L     I   
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 144 LNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKR 203
              + SL  L +  NS+     K   +  + L  L++S N +T      L       +K 
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL----PPRIKV 425

Query: 204 LDLSNN 209
           LDL +N
Sbjct: 426 LDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
            +    + LQ LD+S+N     S  +        K L  LN+ +N L D+I   L     
Sbjct: 368 EMTTQMKSLQQLDISQNSV---SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPR 422

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           +  L L  N I      + +  L  LQ L+++ N +    +       L +L+++ L  N
Sbjct: 423 IKVLDLHSNKI--KSIPKQVVKLEALQELNVASNQLK--SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 97  ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILC 156
           +   L++S+N+   +  S       +L +L+IL + +NR+    +S       L  L L 
Sbjct: 22  KTTILNISQNYISELWTS----DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 157 DNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL-SSLRNLKRLDLSNNY 210
            N +     K        L+ LDLS N      +       ++  LK L LS  +
Sbjct: 78  HNKL----VKISCHPTVNLKHLDLSFNAFDA--LPICKEFGNMSQLKFLGLSTTH 126

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
                +L+ L +S N    +  S         ++L+ L+L +N+L    +S  +   +L 
Sbjct: 41  ILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDLSHNKL--VKIS-CHPTVNLK 93

Query: 152 TLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            L L  N+ +     +   N+  L+ L LS   +     + L ++ L   K L +   
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
             P   L+ LDLS N F  +   K +   GN+ QLK L L    L  S +  +  L    
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEF---GNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 152 TLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
            L++   +      K+    L+      L     T +    +   S++ +  L+LSN
Sbjct: 143 VLLVLGETY---GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I  +   P        +L +     +       S   L  ++  N  N+ +    L+ + 
Sbjct: 9   INQVFPDPGLANAVKQNLGKQSVTDLV------SQKELSGVQNFNGDNSNIQS--LAGMQ 60

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
             T+L  L L  N I        L +L  L+ L ++ N +       L       L RL 
Sbjct: 61  FFTNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLF 112

Query: 206 LSNN 209
           L NN
Sbjct: 113 LDNN 116

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 16/124 (12%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I DLS      +L+ L ++ N    ++             L  L L NN L D     L 
Sbjct: 75  ISDLSPLKDLTKLEELSVNRNRLKNLN-------GIPSACLSRLFLDNNELRD--TDSLI 125

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L +L  L + +N ++   +   L  L  L+VLDL GN IT       GL+ L+ +  +D
Sbjct: 126 HLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT----NTGGLTRLKKVNWID 178

Query: 206 LSNN 209
           L+  
Sbjct: 179 LTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
           +LK L+IL++ NN+L    +  L  L+ L  L L  N I       GL  L+ +  +DL+
Sbjct: 126 HLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLT 180

Query: 182 GNPITGRFIARLG-LSSLRNLKRLD 205
           G       +     L     +K  D
Sbjct: 181 GQKCVNEPVKYQPELYITNTVKDPD 205

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 15/118 (12%)

Query: 96  QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLIL 155
           + L+ L L  N    +      N       L+ L +  N++    LS +  L +L  L +
Sbjct: 70  ENLRILSLGRNLIKKIE-----NLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYM 122

Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG--------LSSLRNLKRLD 205
            +N I        LA L  L+ L L+GNP+   +             +  L NLK+LD
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
            LK  K L L  N +    +S L+ + +L  L L  N I   + +   A    L+ L +S
Sbjct: 46  TLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWIS 101

Query: 182 GNPITGRFIARL-GLSSLRNLKRLDLSNN 209
            N I       L G+  L NL+ L +SNN
Sbjct: 102 YNQIA-----SLSGIEKLVNLRVLYMSNN 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 13/116 (11%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLT-SLTTL 153
            +  + L LS N    +S      S   ++ L+IL+LG N +    +  L+ +  +L  L
Sbjct: 47  LKACKHLALSTNNIEKIS------SLSGMENLRILSLGRNLIKK--IENLDAVADTLEEL 98

Query: 154 ILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            +  N I    +  G+  L  L+VL +S N IT  +     L++L  L+ L L+ N
Sbjct: 99  WISYNQIA---SLSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 113 ESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL 172
           E +    +   ++++ L+     +   + + L+TL +   L L  N+IE       L+ +
Sbjct: 15  EERKSVVATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE---KISSLSGM 69

Query: 173 RYLQVLDLSGNPITGRFIARLGLSSLRN-LKRLDLSNNY 210
             L++L L  N I    I    L ++ + L+ L +S N 
Sbjct: 70  ENLRILSLGRNLIKK--IE--NLDAVADTLEELWISYNQ 104

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%)

Query: 96  QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND----SILSYLNTLTSLT 151
            ++QSLD+         +++       L+Q +++ L +  L +     I S L    +L 
Sbjct: 3   LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 152 TLILCDNSIEGSRTK---QGLANL-RYLQVLDLSGNPITGRFIARLG--LSSLRNLKRLD 205
            L L  N +         QGL      +Q L L    +TG     L   L +L  L+ L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 206 LSNN 209
           LS+N
Sbjct: 120 LSDN 123

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 13/126 (10%)

Query: 96  QELQSLDLSENWFG--GVSESKAYNSSGNLKQLKILNLGNNRLND----SILSYLNTLTS 149
             L+ L L  N  G  G++E        +  +L+ L +    +       +   L    S
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 150 LTTLILCDNSIEGSRTKQGLANLRY----LQVLDLSGNPITGRFIARLG--LSSLRNLKR 203
           L  L L  N +     +     L      L+ L +     T    +     L+  R L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 204 LDLSNN 209
           L +SNN
Sbjct: 346 LQISNN 351

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 75  SNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN 134
           SN + +  GV +L   L     +L++L L        +         +   L+ L LG+N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 135 RLNDSILSYL-----NTLTSLTTLILCDNSI--EGSRT-KQGLANLRYLQVLDLSGNPIT 186
           +L D  ++ L     +  + L TL + +  I  +G     + L     L+ L L+GN + 
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 187 ---GRFIARLGLSSLRNLKRLDLSNN 209
               R +    L     L+ L + + 
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSC 323

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 11/141 (7%)

Query: 80  SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS 139
              G+ +L   L  P   L+ L L        S     +        K L + NN +N++
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185

Query: 140 ILSYL-----NTLTSLTTLILCDNSI--EGSRT-KQGLANLRYLQVLDLSGNPITG---R 188
            +  L     ++   L  L L    +  +  R     +A+   L+ L L  N +      
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245

Query: 189 FIARLGLSSLRNLKRLDLSNN 209
            +    L     L+ L +   
Sbjct: 246 ELCPGLLHPSSRLRTLWIWEC 266

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 11/131 (8%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL----- 144
            L P  Q+ Q + L +            ++      L  LNL +N L D  +  +     
Sbjct: 22  ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81

Query: 145 NTLTSLTTLILCDNSI--EGSRT-KQGLANLRYLQVLDLSGNPITG---RFIARLGLSSL 198
                +  L L +  +   G       L  L  LQ L LS N +     + +    L   
Sbjct: 82  TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141

Query: 199 RNLKRLDLSNN 209
             L++L L   
Sbjct: 142 CRLEKLQLEYC 152

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 13/143 (9%)

Query: 80  SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS 139
             +G  +L  +L  P  +L+SL +    F     S   +     + L  L + NNRL D+
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 140 ILSYL-----NTLTSLTTLILCDNSI--EGSRT-KQGLANLRYLQVLDLSGNPITGRFIA 191
            +  L        + L  L L D  +      +    L     L+ LDLS N +    I 
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416

Query: 192 RLGLSSLRN----LKRLDLSNNY 210
           +L + S+R     L++L L + Y
Sbjct: 417 QL-VESVRQPGCLLEQLVLYDIY 438

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 80  SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS 139
              GV  +   L  P  ++Q L L      G       ++   L  L+ L+L +N L D+
Sbjct: 69  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128

Query: 140 ILSYL-----NTLTSLTTLILCDNSI--EGSRT-KQGLANLRYLQVLDLSGNPIT---GR 188
            L  L     +    L  L L   S+           L      + L +S N I     R
Sbjct: 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188

Query: 189 FIARLGLSSLRNLKRLDLSNN 209
            + +    S   L+ L L + 
Sbjct: 189 VLCQGLKDSPCQLEALKLESC 209

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 98  LQSLDLSENWFG--GVSE-SKAYNSSGNLKQLKILNLGNNRLND----SILSYLNTLTSL 150
           L  L +S N     GV E  +          L++L L +  ++D    S+ + L    SL
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQ--PGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 151 TTLILCDNSIEGSRTK---QGLANLRY-LQVLDLSGNPITGRFIARLG--LSSLRNLKRL 204
             L L +N +  +      + +      L+ L L     +     RL        +L+ +
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 91  LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSL 150
           L     +  ++D S+N      E +  +    L++LK L + NNR+          L  L
Sbjct: 37  LGATLDQFDAIDFSDN------EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 151 TTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG-LSSLRNLKRLD 205
           T LIL +NS+        LA+L+ L  L +  NP+T +   RL  +  +  ++ LD
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
           N  + + L+L   ++   I +   TL     +   DN I   R   G   LR L+ L ++
Sbjct: 17  NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTLLVN 72

Query: 182 GNPITGRFIARLGLSSLRNLKRLDLSNN 209
            N I    I      +L +L  L L+NN
Sbjct: 73  NNRICR--IGEGLDQALPDLTELILTNN 98

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 17/129 (13%)

Query: 85  IILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL 144
           +I   + +      + LDL              N    L Q   ++  +N +    L   
Sbjct: 8   LIEQAAQYTNAVRDRELDLRGY-----KIPVIENLGATLDQFDAIDFSDNEIRK--LDGF 60

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG----LSSLRN 200
             L  L TL++ +N I     +     L  L  L L+ N      +  LG    L+SL++
Sbjct: 61  PLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNN-----SLVELGDLDPLASLKS 114

Query: 201 LKRLDLSNN 209
           L  L +  N
Sbjct: 115 LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 128 ILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG 187
           ++ L    +  +  +          L L    I     +   A L     +D S N I  
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR- 55

Query: 188 RFIARL-GLSSLRNLKRLDLSNN 209
               +L G   LR LK L ++NN
Sbjct: 56  ----KLDGFPLLRRLKTLLVNNN 74

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 8/120 (6%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
                 L SL LS N    +  S+A+     +  L+ L+L +N L+       + L +L 
Sbjct: 60  PTRLTNLHSLLLSHNHLNFI-SSEAFV---PVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 152 TLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL--GLSSLRNLKRLDLSNN 209
            L+L +N I          ++  LQ L LS N I+ RF   L    + L  L  LDLS+N
Sbjct: 116 VLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 126 LKILNLGNNRLNDSILS--YLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGN 183
             +L+L +N L+  + +      LT+L +L+L  N +    + +    +  L+ LDLS N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 184 PITGRFIARLGLSSLRNLKRLDLSNN 209
            +    +     S L+ L+ L L NN
Sbjct: 99  HLH--TLDEFLFSDLQALEVLLLYNN 122

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 96  QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-LNTLTSLTTLI 154
             L+ LDLS N    + E        +L+ L++L L NN +   +       +  L  L 
Sbjct: 88  PNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLY 142

Query: 155 LCDNSIEG--SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKR--LDLSNN 209
           L  N I        +    L  L +LDLS N +    +    L  L    +  L L NN
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK--KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 148 TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS 207
           +    L L  N++   R +     L  L  L LS N +   FI+      + NL+ LDLS
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLS 96

Query: 208 NN 209
           +N
Sbjct: 97  SN 98

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND-SILSYLN 145
           ++   F     L+ LDLS N+   +S S        L  L  LNL  N        S  +
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT L  L + +        ++  A L +L+ L++  + +         L S++N+  L 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YEPKSLKSIQNVSHLI 204

Query: 206 LSNN 209
           L   
Sbjct: 205 LHMK 208

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 16/127 (12%)

Query: 91  LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-NTLTS 149
            F     L+ L++  +            S  +++ +  L L   +    +L    +  +S
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEP----KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223

Query: 150 LTTLILCDNSIEGSRTKQ-------GLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLK 202
           +  L L D  ++     +        L      + + ++   +    + +L L+ +  L 
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKL-LNQISGLL 280

Query: 203 RLDLSNN 209
            L+ S N
Sbjct: 281 ELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 16/126 (12%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT----- 146
               Q +  L L       + E            ++ L L +  L+    S L+T     
Sbjct: 194 LKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 147 ---LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKR 203
                +   + + D S+   +  + L  +  L  L+ S N +    +       L +L++
Sbjct: 250 LIKKFTFRNVKITDESL--FQVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQK 305

Query: 204 LDLSNN 209
           + L  N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-LN 145
           L  S F P   L  L+L  N +  + E+  ++   +L +L+IL +GN      I      
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT L  L +  + ++ S   + L +++ +  L L         +  + +    +++ L+
Sbjct: 172 GLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI--LLLEIFVDVTSSVECLE 228

Query: 206 LSNNY 210
           L +  
Sbjct: 229 LRDTD 233

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 77  PNNSSDGVIILDLS----------LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL 126
           P+  ++ V  LDLS                 LQ+L L+ N    + E    +S  +L  L
Sbjct: 47  PSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE----DSFSSLGSL 102

Query: 127 KILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
           + L+L  N L++   S+   L+SLT L L  N  +        ++L  LQ+L +      
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 187 GRFIARLGLSSLRNLKRLDLSNN 209
              I R   + L  L+ L++  +
Sbjct: 163 -TKIQRKDFAGLTFLEELEIDAS 184

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
            + ++SLDLS N    +S     +       L+ L L +N +N       ++L SL  L 
Sbjct: 51  TEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214
           L  N +  + +      L  L  L+L GNP           S L  L+ L + N   FT 
Sbjct: 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK 164

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 10/137 (7%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           + + SLF    +LQ L +         + K +     L  L+ L +  + L       L 
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA---GLTFLEELEIDASDLQSYEPKSLK 195

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL------GLSSLR 199
           ++ +++ LIL          +  +     ++ L+L    +     + L       L    
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 200 NLKRLDLSNNYGFTTPS 216
             + + +++   F    
Sbjct: 255 TFRNVKITDESLFQVMK 271

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.8 bits (128), Expect = 7e-09
 Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 11/166 (6%)

Query: 54  CNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGG--- 110
                  + +     LK  +  +       V  +  S  P  ++L  L +    +G    
Sbjct: 180 KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV-LYVGVEDYGFDGD 238

Query: 111 VSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL---NTLTSLTTLILCDNSI--EGSRT 165
           ++  +   S      LK L + +    + ++      + L  L T+ +    +  EG+R 
Sbjct: 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298

Query: 166 -KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
               +  +++L+ +++  N ++      L   SL     +  S  Y
Sbjct: 299 LLDHVDKIKHLKFINMKYNYLSDEMKKELQ-KSLPMKIDVSDSQEY 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 133 NNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIAR 192
                   L +L    +LT L + +         + L  L  L+ L +  + +  RF+A 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--RFVAP 73

Query: 193 LGLSSLRNLKRLDLSNN 209
                   L RL+LS N
Sbjct: 74  DAFHFTPRLSRLNLSFN 90

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 122 NLKQLKILNLGNNRLNDSILSY-LNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDL 180
             + L  L + N +    +    L  L  L  L +  + +              L  L+L
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87

Query: 181 SGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           S N +    ++   +  L +L+ L LS N
Sbjct: 88  SFNALE--SLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 89  LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY-LNTL 147
           L   P  + L  L +         E +       L +L+ L +  + L   +     +  
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDL---RGLGELRNLTIVKSGL-RFVAPDAFHFT 79

Query: 148 TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
             L+ L L  N++              LQ L LSGNP+ 
Sbjct: 80  PRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLSGNPLH 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 22/129 (17%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
             L+   P+  L  L+L         E       G L  L  L+L +N+L  S+     T
Sbjct: 46  FSLATLMPYTRLTQLNLDRA------ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQT 98

Query: 147 LTSLTTLILCDNSIEG--SRTKQGLANLRYLQVLDLSGNPIT----GRFIARLGLSSLRN 200
           L +LT L +  N +        +GL  L+ L    L GN +     G        +    
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQEL---YLKGNELKTLPPGLL------TPTPK 149

Query: 201 LKRLDLSNN 209
           L++L L+NN
Sbjct: 150 LEKLSLANN 158

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 126 LKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPI 185
             IL+L  N L    L+ L   T LT L L    +   +    L  L     LDLS N +
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT---LDLSHNQL 89

Query: 186 T---GRFIARLGLSSLRNLKRLDLSNN 209
                         +L  L  LD+S N
Sbjct: 90  QSLPLLG------QTLPALTVLDVSFN 110

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 30/169 (17%)

Query: 60  RVTELSLNRLKHYKSSNPNNSSDGVIILDLS-----LFPP----FQELQSLDLSENWFGG 110
           ++   +   LK       + +  G + L+L       FP        LQ + +       
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME 118

Query: 111 VSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN--------SIEG 162
           + ++           L+ L L  N L  ++ + + +L  L  L +            +  
Sbjct: 119 LPDT-----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 163 SRTKQGLANLRYLQVLDLSGNPITGRFIARL--GLSSLRNLKRLDLSNN 209
           +        L  LQ L L    I       L   +++L+NLK L + N+
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-----SLPASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 17/121 (14%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           LQSL L       +  S       NL+ LK L + N+ L+ ++   ++ L  L  L L  
Sbjct: 185 LQSLRLEWTGIRSLPASI-----ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

Query: 158 NSIEGSRTK--QGLANLRYLQVLDLSGNPITGRFIARL--GLSSLRNLKRLDLSNNYGFT 213
            +   +             L+ L L         +  L   +  L  L++LDL      +
Sbjct: 239 CT---ALRNYPPIFGGRAPLKRLILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 214 T 214
            
Sbjct: 292 R 292

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
           L+SL +  +    +  +       +L +L+ L+L       +          L  LIL D
Sbjct: 208 LKSLKIRNSPLSALGPA-----IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 158 NSIEGSRTK--QGLANLRYLQVLDLSGNPITGRFIARL--GLSSLRNLKRLDLSNN 209
            S   +       +  L  L+ LDL G       ++RL   ++ L     + +  +
Sbjct: 263 CS---NLLTLPLDIHRLTQLEKLDLRGCV----NLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 10/127 (7%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
                     +  +       +  +              L L +  L          L+ 
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH 105

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL--GLSSLRNLKRLDLS 207
           L  + +    +        +     L+ L L+ NP+       L   ++SL  L+ L + 
Sbjct: 106 LQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-----ALPASIASLNRLRELSIR 158

Query: 208 NNYGFTT 214
                T 
Sbjct: 159 ACPELTE 165

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 21/122 (17%)

Query: 88  DLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTL 147
            LS  PP   L+ L +S N    + E        N   LKI+++ NN L        +  
Sbjct: 125 ALSDLPP--LLEYLGVSNNQLEKLPEL------QNSSFLKIIDVDNNSLK----KLPDLP 172

Query: 148 TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS 207
            SL  +   +N +E       L NL +L  +    N +              +L+ +   
Sbjct: 173 PSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKLP------DLPLSLESIVAG 223

Query: 208 NN 209
           NN
Sbjct: 224 NN 225

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 21/120 (17%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
           SL      L+SL  S N    + E        +LK L + N     L+D           
Sbjct: 85  SLPELPPHLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKALSDLP-------PL 132

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L  L + +N +E       L N  +L+++D+  N +              +L+ +   NN
Sbjct: 133 LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKKLP------DLPPSLEFIAAGNN 183

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 21/120 (17%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
            L      L+S+    N    + E        NL  L  +   NN L     +  +   S
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPEL------QNLPFLTTIYADNNLLK----TLPDLPPS 258

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           L  L + DN +  +   +   +L +L V +   + ++             NL  L+ S+N
Sbjct: 259 LEALNVRDNYL--TDLPELPQSLTFLDVSENIFSGLS---------ELPPNLYYLNASSN 307

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 21/119 (17%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
                 L ++    N    + +            L+ +  GNN L    L  L  L  LT
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDL--------PLSLESIVAGNNIL--EELPELQNLPFLT 240

Query: 152 TLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
           T+   +N ++         +L  L V D     +             ++L  LD+S N 
Sbjct: 241 TIYADNNLLK--TLPDLPPSLEALNVRDNYLTDLP---------ELPQSLTFLDVSENI 288

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L    F  F ELQ LDLS      + E  AY    +L  L  L L  N +    L   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQ---SLSHLSTLILTGNPIQSLALGAFSG 98

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL-SSLRNLKRLD 205
           L+SL  L+  + ++  S     + +L+ L+ L+++ N I           S+L NL+ LD
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ--SFKLPEYFSNLTNLEHLD 155

Query: 206 LSNN 209
           LS+N
Sbjct: 156 LSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 11/116 (9%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSIL-SYLNTLTSLTTLILC 156
           LQ L   E        S      G+LK LK LN+ +N +    L  Y + LT+L  L L 
Sbjct: 102 LQKLVAVETN----LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 157 DNSIE--GSRTKQGLANLRYLQV-LDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            N I+       + L  +  L + LDLS NP+   FI       +  LK L L  N
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEI-RLKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 126 LKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL-ANLRYLQVLDLSGNP 184
            K L+L  N L         +   L  L L    I     + G   +L +L  L L+GNP
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNP 87

Query: 185 ITGRFIARLGLSSLRNLKRLDLSNN 209
           I    +A    S L +L++L     
Sbjct: 88  IQ--SLALGAFSGLSSLQKLVAVET 110

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 98  LQSLDLSENWFGGVSESK-AYNSSGNLKQLKILNLGNNRLNDSILSYL-NTLTSLTTLIL 155
           L+ L+L+      V  +  A         L  +NL + +L+ + L  L         L L
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL 133

Query: 156 CDNSIEGSRTK---QGLA-NLRYLQVLDLSGNPIT---GRFIARLGLSSLRNLKRLDLSN 208
             NS+     K     L  +   +  L LS NP+T      +   GL+   ++  L L +
Sbjct: 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLH 192

Query: 209 N 209
            
Sbjct: 193 T 193

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 15/123 (12%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-----NTLTSLTT 152
           L  ++L+      +  +          + + L L  N L       L     +    +TT
Sbjct: 103 LDEVNLASC---QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159

Query: 153 LILCDNSIEGSRTK---QGLANLRYLQVLDLSGNPIT---GRFIARLGLSSLRNLKRLDL 206
           L L +N +  +      +GLA    +  L L    +       +A   L   R L+ L++
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNV 218

Query: 207 SNN 209
           + N
Sbjct: 219 AYN 221

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 23/135 (17%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS-------ILSYLNTLTSL 150
           LQ L+++ N  G  +      ++     L++L+L  N L+         +         +
Sbjct: 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272

Query: 151 TTLILCDNSI---------EGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL--- 198
              +    ++         E  R        R  + L+L    +     A L        
Sbjct: 273 VVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQL 332

Query: 199 ----RNLKRLDLSNN 209
                 ++ L     
Sbjct: 333 LRVEGEVRALLEQLG 347

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 8/174 (4%)

Query: 43  ISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLD 102
            SD   W+ L           L  +      S            +D  L   F   +   
Sbjct: 43  ASDESLWQTLDLTGK-----NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Query: 103 LSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEG 162
           +  +    +  S  +       +L+ L+L   RL+D I++ L   ++L  L L   S   
Sbjct: 98  MDLSN-SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156

Query: 163 SRTKQGLA-NLRYLQVLDLSGNP-ITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214
               Q L  +   L  L+LS     T + +          + +L+LS       
Sbjct: 157 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

Query: 89  LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNL-GNNRLNDSILSYL--N 145
           ++       L  L+LS     G SE        +  +L  LNL       +  +     +
Sbjct: 135 VNTLAKNSNLVRLNLS--GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192

Query: 146 TLTSLTTLIL--CDNSIEGSRTKQGLANLRYLQVLDLSGNP-ITGRFIARLGLSSLRNLK 202
              ++T L L     +++ S     +     L  LDLS +  +            L  L+
Sbjct: 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQ 250

Query: 203 RLDLSNNYGFT 213
            L LS  Y   
Sbjct: 251 HLSLSRCYDII 261

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 19/124 (15%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           I D++       L  L  + N    +  S           L  L   +N+L +  ++   
Sbjct: 54  ITDMTGIEKLTGLTKLICTSNNITTLDLS-------QNTNLTYLACDSNKLTNLDVT--- 103

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            LT LT L    N +    TK  ++    L  L+ + N +T      + +S    L  LD
Sbjct: 104 PLTKLTYLNCDTNKL----TKLDVSQNPLLTYLNCARNTLT-----EIDVSHNTQLTELD 154

Query: 206 LSNN 209
              N
Sbjct: 155 CHLN 158

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 18/115 (15%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
             +L  LD   N      +           QL  L+   N++ +  +S       L  L 
Sbjct: 147 NTQLTELDCHLN------KKITKLDVTPQTQLTTLDCSFNKITELDVSQ---NKLLNRLN 197

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
              N+I    TK  L     L  LD S N +T      + ++ L  L   D S N
Sbjct: 198 CDTNNI----TKLDLNQNIQLTFLDCSSNKLT-----EIDVTPLTQLTYFDCSVN 243

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 18/131 (13%)

Query: 79  NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138
            ++  +   D         L SLD   +    ++          L  L  L   +N +  
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG------IEKLTGLTKLICTSNNITT 78

Query: 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL 198
             LS     T+LT L    N +    T   +  L  L  L+   N +T      L +S  
Sbjct: 79  LDLS---QNTNLTYLACDSNKL----TNLDVTPLTKLTYLNCDTNKLTK-----LDVSQN 126

Query: 199 RNLKRLDLSNN 209
             L  L+ + N
Sbjct: 127 PLLTYLNCARN 137

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 11/88 (12%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
           N              +         L +LT+L   ++SI       G+  L  L  L  +
Sbjct: 19  NFASEVAAAFEMQATDTISEE---QLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICT 72

Query: 182 GNPITGRFIARLGLSSLRNLKRLDLSNN 209
            N IT      L LS   NL  L   +N
Sbjct: 73  SNNITT-----LDLSQNTNLTYLACDSN 95

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 21/123 (17%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           LDL+      +L  LD S N    +  +        L QL   +   N L +  +S   T
Sbjct: 206 LDLNQNI---QLTFLDCSSNKLTEIDVT-------PLTQLTYFDCSVNPLTELDVS---T 252

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           L+ LTTL      +     +  L +   L      G       I  L ++    L  LD 
Sbjct: 253 LSKLTTLHCIQTDL----LEIDLTHNTQLIYFQAEGCRK----IKELDVTHNTQLYLLDC 304

Query: 207 SNN 209
              
Sbjct: 305 QAA 307

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 121 GNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDL 180
            +  QL +L+     + +  LS       L  L L +  +    T+  +++   L+ L  
Sbjct: 294 THNTQLYLLDCQAAGITELDLSQ---NPKLVYLYLNNTEL----TELDVSHNTKLKSLSC 346

Query: 181 SGNPITGRFIARLGLSSLRNLKRLDLSNN 209
               I     +   +  +  L     +  
Sbjct: 347 VNAHIQD--FS--SVGKIPALNNNFEAEG 371

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 99  QSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN 158
             L L+ N F  +  +  +     L QL+ +N  NN++ D         + +  ++L  N
Sbjct: 35  AELRLNNNEFTVLEATGIFK---KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 159 SIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            +E +   +    L  L+ L L  N IT   +       L +++ L L +N
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT--CVGNDSFIGLSSVRLLSLYDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           +    +F    +L+ ++ S N    + E  A+        +  + L +NRL +       
Sbjct: 47  LEATGIFKKLPQLRKINFSNNKITDI-EEGAFEG---ASGVNEILLTSNRLENVQHKMFK 102

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205
            L SL TL+L  N I           L  +++L L  N IT   +A     +L +L  L+
Sbjct: 103 GLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT--TVAPGAFDTLHSLSTLN 159

Query: 206 LSNN 209
           L  N
Sbjct: 160 LLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 148 TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS 207
                L L +N             L  L+ ++ S N IT   I          +  + L+
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLT 89

Query: 208 NN 209
           +N
Sbjct: 90  SN 91

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
           F P+++L+ +DLS N    ++     ++   L+ L  L L  N++ +   S    L SL 
Sbjct: 52  FSPYKKLRRIDLSNNQISELAP----DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107

Query: 152 TLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            L+L  N I          +L  L +L L  N +  + IA+   S LR ++ + L+ N
Sbjct: 108 LLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL--QTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 99  QSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN 158
             + L +N    +    A++     K+L+ ++L NN++++        L SL +L+L  N
Sbjct: 35  TEIRLEQNTIKVI-PPGAFS---PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90

Query: 159 SIEG--SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            I        +GL +L+    L L+ N I    +       L NL  L L +N
Sbjct: 91  KITELPKSLFEGLFSLQL---LLLNANKINC--LRVDAFQDLHNLNLLSLYDN 138

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 78  NNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137
           +  +   +    +L+  F E+    LS +     +         +      LN   N   
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISD----TPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 138 DSILSYLNTLTSLTTLILCDNSIEG-SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLS 196
           DS+    +TL  L TLIL  N ++   +      N+  L+ LD+S N +          +
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN-SHAYDRTCA 425

Query: 197 SLRNLKRLDLSNN 209
              ++  L+LS+N
Sbjct: 426 WAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTS 149
            +    + + SL+  +     ++      +    + + +LNL +N L  S+   L     
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451

Query: 150 LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           +  L L +N I      + + +L+ LQ L+++ N +    +       L +L+ + L +N
Sbjct: 452 VKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLK--SVPDGVFDRLTSLQYIWLHDN 507

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 15/118 (12%)

Query: 96  QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN---DSILSYLNTLTSLTT 152
             L+ L +  N    + E          + L+ L++  N L       +   ++  +   
Sbjct: 160 TSLEVLSVRNNQLTFLPEL--------PESLEALDVSTNLLESLPAVPVRNHHSEETEIF 211

Query: 153 LILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
               +N I  +   + + +L     + L  NP++ R    L                Y
Sbjct: 212 FRCRENRI--THIPENILSLDPTCTIILEDNPLSSRIRESLSQ--QTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 21/124 (16%)

Query: 89  LSLFPP-FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTL 147
           LS  P     L+ LD+  N    + E            L+ +N  NN+L           
Sbjct: 112 LSTLPELPASLKHLDVDNNQLTMLPEL--------PALLEYINADNNQLT----MLPELP 159

Query: 148 TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG--RFIARLGLSSLRNLKRLD 205
           TSL  L + +N +              L+ LD+S N +        R    S        
Sbjct: 160 TSLEVLSVRNNQLTFLP-----ELPESLEALDVSTNLLESLPAVPVRN-HHSEETEIFFR 213

Query: 206 LSNN 209
              N
Sbjct: 214 CREN 217

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 22/115 (19%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
             +   L L+      + ++          Q+ +L +  N L     S      SL  L 
Sbjct: 58  INQFSELQLNRLNLSSLPDN-------LPPQITVLEITQNALI----SLPELPASLEYLD 106

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            CDN +              L+ LD+  N +T      L       L+ ++  NN
Sbjct: 107 ACDNRLS-----TLPELPASLKHLDVDNNQLT-----MLP-ELPALLEYINADNN 150

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 16/106 (15%)

Query: 119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL 178
              N   L   N   N ++ +   Y +         L   +   + +      +     L
Sbjct: 6   PINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 179 DLSGNPIT------GRFIARLGLS---------SLRNLKRLDLSNN 209
            L+   ++         I  L ++            +L+ LD  +N
Sbjct: 65  QLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDN 110

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 23/123 (18%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN---DSILSYLNT 146
             F  + + +   L         E+ +      + Q   L L    L+   D++      
Sbjct: 28  DYFSAWDKWEKQALPGENRN---EAVSLLKECLINQFSELQLNRLNLSSLPDNLPP---- 80

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
              +T L +  N++              L+ LD   N ++      L      +LK LD+
Sbjct: 81  --QITVLEITQNALI-----SLPELPASLEYLDACDNRLS-----TL-PELPASLKHLDV 127

Query: 207 SNN 209
            NN
Sbjct: 128 DNN 130

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 16/149 (10%)

Query: 75  SNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFG--GVSESKAYNSSGNLKQLKILNLG 132
              + SS        +       + SL+L  N  G     E     ++     +  LNL 
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP-ANVNSLNLR 175

Query: 133 NNRLNDS----ILSYLNTL-TSLTTLILCDNSIEGSRTKQGLA-----NLRYLQVLDLSG 182
            N L       +  +L ++  S+T+L L  N + G ++   LA        ++  L+L  
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 183 NPITGRFIARLG--LSSLRNLKRLDLSNN 209
           N + G  +  L     SL++L+ + L  +
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYD 263

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 15/144 (10%)

Query: 80  SSDGVIILDLSLFPPFQELQSLDLSENWFGGVS-ESKAYNSSGNLKQLKILNLGNNRLND 138
            S   + L  +       + SL+LS N  G  + +      +     +  LNL  N L+ 
Sbjct: 35  YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94

Query: 139 SILSYL-----NTLTSLTTLILCDNSIEGSRTKQGLANL-----RYLQVLDLSGNPIT-- 186
                L         ++T L L  N    S++              +  L+L GN +   
Sbjct: 95  KSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153

Query: 187 -GRFIARLGLSSLRNLKRLDLSNN 209
               + ++  +   N+  L+L  N
Sbjct: 154 SSDELIQILAAIPANVNSLNLRGN 177

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 80  SSDGVIILDLSLFPPFQELQSLDLSENWFG--GVSE-SKAYNSSGNLKQLKILNLGNNRL 136
           +S     L   L      + SLDLS N  G    +E +  ++S      +  LNL  N L
Sbjct: 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--IPNHVVSLNLCLNCL 237

Query: 137 NDS----ILSYLNTLTSLTTLILCDNSIEGSRTKQ------GLANLRYLQVLDLSGNPIT 186
           +      +    ++L  L T+ L  + ++    +Q         N++ + ++D +G  I 
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

Query: 187 ---GRFIARLGLSSLRNLKRLDLSNNYGFTT 214
                 I+ L            L N      
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCLIFA 328

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 18/144 (12%), Positives = 39/144 (27%), Gaps = 14/144 (9%)

Query: 80  SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND- 138
                  L          + SL+L  N   G S         +LK L+ + L  + + + 
Sbjct: 209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

Query: 139 ------SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR----YLQVLDLSGNPITGR 188
                 ++ +    +  +  +      I  S +      +R       V  L    +   
Sbjct: 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFA 328

Query: 189 FIARLGLSSLRN---LKRLDLSNN 209
              +  +  L     L+    +  
Sbjct: 329 QKHQTNIEDLNIPDELRESIQTCK 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 31/176 (17%), Positives = 49/176 (27%), Gaps = 39/176 (22%)

Query: 53  KCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLS-----LFPP-FQELQSLDLSEN 106
            C      V  +  + L       P +    +  L +        P    EL++L++S N
Sbjct: 36  ACLNNGNAVLNVGESGLTTLPDCLPAH----ITTLVIPDNNLTSLPALPPELRTLEVSGN 91

Query: 107 WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI--LSYLN-----------TLTSLTTL 153
               +           L +L I +     L      L  L                L  L
Sbjct: 92  QLTSLPVLP-----PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQEL 146

Query: 154 ILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            + DN +         A    L  L    N +T      L       L+ L +S+N
Sbjct: 147 SVSDNQLA-----SLPALPSELCKLWAYNNQLT-----SLP-MLPSGLQELSVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 32/128 (25%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI--LSYLN---------- 145
           LQ L +S+N    +           L +L   N     L      L  L           
Sbjct: 183 LQELSVSDNQLASLPTL-----PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP 237

Query: 146 -TLTSLTTLILCDNSIEGSRTKQGL-ANLRYLQVLDLSGNPITGRFIARL--GLSSLRNL 201
              + L  L++  N +        L      L  L +  N +T     RL   L  L + 
Sbjct: 238 VLPSELKELMVSGNRLTS------LPMLPSGLLSLSVYRNQLT-----RLPESLIHLSSE 286

Query: 202 KRLDLSNN 209
             ++L  N
Sbjct: 287 TTVNLEGN 294

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 5/119 (4%)

Query: 91  LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSL 150
                 +   LD+ +N      E  +    G   +  IL L  N + +   S  N     
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNS--FVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 151 TTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
              +  +N++E               +LD+S   I    +   GL +L+ L+     N 
Sbjct: 181 ELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIH--SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 11/114 (9%)

Query: 97  ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILC 156
           E   L L++N    +      ++    +  ++    NN L +      +  +    L + 
Sbjct: 155 ESVILWLNKNGIQEIHN----SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 157 DNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210
              I  S    GL NL+ L+                     L  L    L+   
Sbjct: 211 RTRIH-SLPSYGLENLKKLRARSTYNLKKLPTL------EKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI-LSYLNTLTSLTTL 153
            +    L         + +     +      L+ + +  N + + I     + L  L  +
Sbjct: 29  PRNAIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84

Query: 154 ILCD-NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            +   N++      +   NL  LQ L +S   I    +  +          LD+ +N
Sbjct: 85  RIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK--HLPDVHKIHSLQKVLLDIQDN 138

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT 151
           F  F +L+ +++S+N    V E+  +++   L +++I     N L          L +L 
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK--ANNLLYINPEAFQNLPNLQ 107

Query: 152 TLILCDNSIEG--SRTKQGLANLRYLQVLDLSGNP-ITGRFIARLGLSSLR-NLKRLDLS 207
            L++ +  I+      K           LD+  N  I    I R     L      L L+
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVL---LDIQDNINIH--TIERNSFVGLSFESVILWLN 162

Query: 208 NN 209
            N
Sbjct: 163 KN 164

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 145 NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204
           +   +   L      +     K   +    L+ +++S N +    I     S+L  L  +
Sbjct: 27  DLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEI 84

Query: 205 DLSNN 209
            +   
Sbjct: 85  RIEKA 89

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 14/124 (11%)

Query: 92  FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT----- 146
           F     +  + +S +      ES ++    NL ++  + + N R     L+Y++      
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIRNTRN----LTYIDPDALKE 103

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKR-LD 205
           L  L  L + +  ++       + +     +L+++ NP     I       L N    L 
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLK 162

Query: 206 LSNN 209
           L NN
Sbjct: 163 LYNN 166

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 15/129 (11%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
             DL+          L++++N +       A+    N      L L NN    S+  Y  
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGFT-SVQGYAF 176

Query: 146 TLTSLTTLILCDN----SIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNL 201
             T L  + L  N     I+      G+ +     +LD+S   +T      L    L +L
Sbjct: 177 NGTKLDAVYLNKNKYLTVID-KDAFGGVYSG--PSLLDVSQTSVT-----ALPSKGLEHL 228

Query: 202 KRLDLSNNY 210
           K L   N +
Sbjct: 229 KELIARNTW 237

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 22/124 (17%)

Query: 98  LQSLDLSENWFG-----GVSESKAYNSSGNLKQLKILNLGNNRLND----SILSYLNTLT 148
           ++   +            ++E    N++     LK LN+ +N ++     +++  L + T
Sbjct: 67  VKKFSIVGTRSNDPVAFALAEMLKVNNT-----LKSLNVESNFISGSGILALVEALQSNT 121

Query: 149 SLTTLILCDNSIE-GSRTKQGLANL----RYLQVLDLSGNPITGRFIARLGL---SSLRN 200
           SL  L + + S   G+  +  +AN+      L            R  A   +   + L  
Sbjct: 122 SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVR 181

Query: 201 LKRL 204
            +RL
Sbjct: 182 KRRL 185

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 28/132 (21%)

Query: 98  LQSLDLSENWFGGVSESKA------YNSSGNLKQLKILNLGNNRLND----SILSYLNTL 147
           L+ ++L+      V   KA       N+      +K  ++   R ND    ++   L   
Sbjct: 38  LEEVNLNNIMNIPVPTLKACAEALKTNTY-----VKKFSIVGTRSNDPVAFALAEMLKVN 92

Query: 148 TSLTTLILCDNSIEGSRTKQGLAN-------LRYLQVLDLSGNPIT---GRFIARLGLSS 197
            +L +L +  N I        L         L  L+ +D    P+       IA   L  
Sbjct: 93  NTLKSLNVESNFI-SGSGILALVEALQSNTSLIELR-IDNQSQPLGNNVEMEIAN-MLEK 149

Query: 198 LRNLKRLDLSNN 209
              L +      
Sbjct: 150 NTTLLKFGYHFT 161

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 120 SGNLKQLKILNLGNNRLN--DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQV 177
             N+ +L  LNL NNRL   D + S +    +L  L L  N ++  R    +  L+ L+ 
Sbjct: 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEE 224

Query: 178 LDLSGNPITGRFIARLG-----LSSLRNLKRLD 205
           L L GN +   F  +             L RLD
Sbjct: 225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
            + LDL  N    +  SKA++    L +L++L L +N+L          L +L TL + D
Sbjct: 39  TKKLDLQSNKLSSL-PSKAFHR---LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 158 NSIEG--SRTKQGLANLRYLQVLDLSGNPIT----GRFIARLGLSSLRNLKRLDLSNN 209
           N ++         L N   L  L L  N +       F       SL  L  L L  N
Sbjct: 95  NKLQALPIGVFDQLVN---LAELRLDRNQLKSLPPRVF------DSLTKLTYLSLGYN 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 97  ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILC 156
            L  L L  N    +   + ++S   L +L  L+LG N L        + LTSL  L L 
Sbjct: 110 NLAELRLDRNQLKSL-PPRVFDS---LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165

Query: 157 DNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
           +N ++    +     L  L+ L L  N +    +      SL  LK L L  N
Sbjct: 166 NNQLK-RVPEGAFDKLTELKTLKLDNNQLKR--VPEGAFDSLEKLKMLQLQEN 215

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 29/126 (23%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNL-GNNRLNDSILSYLNTLT 148
           +      ++Q++D +++       S  ++    L+ ++ + L   + + D  L  L+ L 
Sbjct: 55  TGPLDKYKIQAIDATDSCI----MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP-ITGRFIARLGLSSLRNLKRLDLS 207
           +L                      + +  +++     +T + I    L   RNLK L LS
Sbjct: 111 NLQ---------------------KSMLEMEIISCGNVTDKGII--ALHHFRNLKYLFLS 147

Query: 208 NNYGFT 213
           +  G  
Sbjct: 148 DLPGVK 153

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 38/169 (22%), Positives = 55/169 (32%), Gaps = 36/169 (21%)

Query: 57  TAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSL-----FPPFQELQSLDLSENWFG-- 109
                  L    +    + N  NS D +I  +  +           ++ L L  N     
Sbjct: 19  AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78

Query: 110 GVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL 169
              +         L  L  L L  N+L        + LT+L  L+L +N +      Q L
Sbjct: 79  SALKE--------LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL------QSL 124

Query: 170 -----ANLRYLQVLDLSGNPIT----GRFIARLGLSSLRNLKRLDLSNN 209
                  L  L  L+L+ N +     G F        L NL  LDLS N
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVF------DKLTNLTELDLSYN 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 47/205 (22%)

Query: 9   EEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDW--ERLK--CNATAGRVTEL 64
                  L    F+  ++  E   E++  +V++ +     +    +K      +      
Sbjct: 60  AVSGTLRL----FWTLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 65  SLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQS--LDLSENWF------GGVSES-- 114
              R + Y      N +      ++S   P+ +L+   L+L            G  ++  
Sbjct: 113 IEQRDRLY------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 115 --KAYNSSGNLKQL--KI--LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG 168
                 S     ++  KI  LNL N    +++L  L  L           S   S  K  
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 169 L----ANLRYLQ----------VLD 179
           +    A LR L           VL 
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLL 251

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 122 NLKQLKILNL--GNNRLNDSILSYL-NTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL 178
             K+L+          L D  LSY+     ++  ++L           +       LQ L
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 179 DLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
           ++ G   + R IA   ++ L +L+ L +  
Sbjct: 494 EMRGCCFSERAIAAA-VTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 38.8 bits (90), Expect = 9e-04
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 81  SDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI 140
            D  I+  +  F     L+      +    +   + Y +    ++L  L L +    + +
Sbjct: 228 GDFEILELVGFFKAAANLEEFCGG-SLNEDIGMPEKYMNLVFPRKLCRLGL-SYMGPNEM 285

Query: 141 LSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRN 200
                    +  L L    +E       +     L+VL+     I  R +  L     + 
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLA-QYCKQ 343

Query: 201 LKRLDLSN 208
           LKRL +  
Sbjct: 344 LKRLRIER 351

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 32/117 (27%), Positives = 43/117 (36%), Gaps = 19/117 (16%)

Query: 99  QSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN 158
           + LDL       +S+     +   L +L  LNL  N+L        + LT L TL L +N
Sbjct: 38  EKLDLQSTGLATLSD----ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93

Query: 159 SIEG--SRTKQGLANLRYLQVLDLSGNPIT----GRFIARLGLSSLRNLKRLDLSNN 209
            +          L  L     L L GN +     G F        L  LK L L+ N
Sbjct: 94  QLASLPLGVFDHLTQL---DKLYLGGNQLKSLPSGVF------DRLTKLKELRLNTN 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 25/132 (18%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L  + F    +L  L+L  N    +S         +L +L  L L NN+L    L   + 
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQLQTLSA----GVFDDLTELGTLGLANNQLASLPLGVFDH 105

Query: 147 LTSLTTLILCDNSIEGSRTKQGLAN-----LRYLQVLDLSGNPIT----GRFIARLGLSS 197
           LT L  L L  N +      + L +     L  L+ L L+ N +     G F        
Sbjct: 106 LTQLDKLYLGGNQL------KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF------DK 153

Query: 198 LRNLKRLDLSNN 209
           L NL+ L LS N
Sbjct: 154 LTNLQTLSLSTN 165

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 23/142 (16%)

Query: 86  ILDLSLFPPFQELQSLDLSENW-----------FGGVSESKAYNSSGNLKQLKILNLGNN 134
           +   ++   F +++S++L               +GG         S +   L+ + L   
Sbjct: 56  VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM 115

Query: 135 RLNDSILSYL-NTLTSLTTLILCDNSIEGSRTKQGLA----NLRYLQVLDLSGNP---IT 186
            + D  L  +  +  +   L+L         +  GLA      R L+ LDL  +    ++
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVS 172

Query: 187 GRFIARLGLSSLRNLKRLDLSN 208
           G +++     +  +L  L++S 
Sbjct: 173 GHWLSHFP-DTYTSLVSLNISC 193

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 15/164 (9%)

Query: 60  RVTELSLNRLKHYKSSNPNNSSDGVIILDL--SLFPPFQELQSLDLSENWFGGVSESKAY 117
           +V  + L    H+   N      G  +     ++   +  L+ + L       V++    
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK---RMVVTDDCLE 123

Query: 118 NSSGNLKQLKILNLGN-NRLNDSILSYL-NTLTSLTTLILCDNSIEGSRTKQGLA----N 171
             + + K  K+L L +    +   L+ +  T  +L  L L ++ ++   +   L+     
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDT 182

Query: 172 LRYLQVLDLSG--NPITGRFIARLGLSSLRNLKRLDLSNNYGFT 213
              L  L++S   + ++   + RL ++   NLK L L+      
Sbjct: 183 YTSLVSLNISCLASEVSFSALERL-VTRCPNLKSLKLNRAVPLE 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.68
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.66
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.62
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.62
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.59
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.58
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.57
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.47
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.46
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.36
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.36
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.33
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.3
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.03
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.03
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.72
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.65
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.58
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.41
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.18
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.88

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=5.4e-30  Score=207.59  Aligned_cols=179  Identities=25%  Similarity=0.409  Sum_probs=114.6

Q ss_pred             CCCCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCcc--ccceEEcCCC--CcEEEEecCCccccC--CCCCC
Q 045099            5 DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCD--WERLKCNATA--GRVTELSLNRLKHYK--SSNPN   78 (217)
Q Consensus         5 ~~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~--~~~~~   78 (217)
                      +.|.+.|++||++||+++.++.       .+.+|..  +.+||.  |.||.|+...  ++|+.++++++.+.+  .++  
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-------~l~~W~~--~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~--   69 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-------TLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP--   69 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-------GGTTCCT--TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC--
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-------cccCCCC--CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC--
Confidence            4699999999999999996543       6889976  568998  9999998654  799999999999886  332  


Q ss_pred             CCCCCceeecCCCCCCCCCccEEECCC-CcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccC
Q 045099           79 NSSDGVIILDLSLFPPFQELQSLDLSE-NWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD  157 (217)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~  157 (217)
                                 ..+..+++|++|++++ |.+.+.+|.    .|..+++|++|++++|.+++.+|..+..+++|++|++++
T Consensus        70 -----------~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  134 (313)
T 1ogq_A           70 -----------SSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             -----------GGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             -----------hhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence                       2344555555555553 555555554    455555555555555555555555555555555555555


Q ss_pred             ccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCC-CCCEEeccCCCCC
Q 045099          158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLR-NLKRLDLSNNYGF  212 (217)
Q Consensus       158 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~-~L~~L~l~~N~l~  212 (217)
                      |.+++.+|. .+..+++|++|++++|.+++.+|.  .+..++ +|++|++++|+++
T Consensus       135 N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          135 NALSGTLPP-SISSLPNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             SEEESCCCG-GGGGCTTCCEEECCSSCCEEECCG--GGGCCCTTCCEEECCSSEEE
T ss_pred             CccCCcCCh-HHhcCCCCCeEECcCCcccCcCCH--HHhhhhhcCcEEECcCCeee
Confidence            555544444 455555555555555555555554  455554 5555555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.1e-25  Score=198.26  Aligned_cols=78  Identities=23%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHhhhhccCCCCccccc-------cCCCcCCCCCCCccc---cceEEcCCCCcEEEEecCCccccCCCCC
Q 045099            8 LEEERIGLLEIKRFFISINGGEYADEI-------LTSWVDDGISDCCDW---ERLKCNATAGRVTELSLNRLKHYKSSNP   77 (217)
Q Consensus         8 ~~~~~~~l~~~k~~~~~~~~~~~~~~~-------l~~W~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~   77 (217)
                      ...|++||.+||+++.+++     |..       ..+|..  +.++|.|   .||.|+.. ++|++++|+++++.|.+++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~-----w~~~~~~~~~~~~W~~--~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~   99 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKN-----WSQQGFGTQPGANWNF--NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD   99 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGG-----CCCCC------CCCCC--SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG
T ss_pred             HHHHHHHHHHHHHHcCCCC-----cccCCcCCccCCCCCC--CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh
Confidence            3479999999999998776     322       347986  5789999   99999864 8999999999999866543


Q ss_pred             CCCCCCceeecCCCCCCCCCccEEECCCC
Q 045099           78 NNSSDGVIILDLSLFPPFQELQSLDLSEN  106 (217)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n  106 (217)
                                   .++.+++|++|++++|
T Consensus       100 -------------~l~~L~~L~~L~Ls~N  115 (636)
T 4eco_A          100 -------------AIGQLTELEVLALGSH  115 (636)
T ss_dssp             -------------GGGGCTTCCEEESCCG
T ss_pred             -------------HHhcCccceEEECcCC
Confidence                         3444555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=1.3e-25  Score=201.59  Aligned_cols=193  Identities=29%  Similarity=0.314  Sum_probs=154.8

Q ss_pred             CCCCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCccccceEEcCCCCcEEEEecCCccccCC---CCCCC--
Q 045099            5 DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKS---SNPNN--   79 (217)
Q Consensus         5 ~~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~---~~~~~--   79 (217)
                      .++.+.|++||++||+++.++.       .+.+|..  +.+||.|.||.|+  .++|+.++++++.+.|.   +++..  
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~-------~l~~W~~--~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~   75 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN-------LLPDWSS--NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLS   75 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT-------SSTTCCT--TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc-------cccCCCC--CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhc
Confidence            4467889999999999997543       6899975  5689999999998  58999999999998875   33211  


Q ss_pred             ---------CCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHh-hcCCC
Q 045099           80 ---------SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-NTLTS  149 (217)
Q Consensus        80 ---------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~  149 (217)
                               ...++.. .+..++.+++|++|++++|.+++.+|...  .++.+++|++|++++|.+.+.+|..+ ..+++
T Consensus        76 L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  152 (768)
T 3rgz_A           76 LTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLT--SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS  152 (768)
T ss_dssp             CTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGG--GGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred             cCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChH--HHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence                     1122211 13568889999999999999998766411  57889999999999999988777765 78999


Q ss_pred             CCEEEccCccccCccchHh---hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          150 LTTLILCDNSIEGSRTKQG---LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       150 L~~L~l~~n~l~~~~p~~~---~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      |++|++++|.+++..+. .   +..+++|++|++++|.+++.++    +..+++|++|++++|++++.++
T Consensus       153 L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~  217 (768)
T 3rgz_A          153 LEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP  217 (768)
T ss_dssp             CSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC
T ss_pred             CCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCc
Confidence            99999999999976664 4   7889999999999999998554    3789999999999999988654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=1.2e-24  Score=196.74  Aligned_cols=192  Identities=19%  Similarity=0.178  Sum_probs=121.3

Q ss_pred             CCCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCC---CCCC--ccc------------cceEEcCCCCcEEEEecCC
Q 045099            6 GCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDG---ISDC--CDW------------ERLKCNATAGRVTELSLNR   68 (217)
Q Consensus         6 ~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~---~~~~--c~w------------~gv~c~~~~~~v~~l~l~~   68 (217)
                      .+...|++||++||+++.++           +|..+.   ..++  |.|            .||.|+. .++|++|+|++
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~  332 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK-----------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG  332 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT
T ss_pred             ccchHHHHHHHHHHHHcCCC-----------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc
Confidence            35568999999999999654           465422   1344  999            9999986 68999999999


Q ss_pred             ccccCCCCCCCCC-CCceee------------------------------------------------------------
Q 045099           69 LKHYKSSNPNNSS-DGVIIL------------------------------------------------------------   87 (217)
Q Consensus        69 ~~~~~~~~~~~~~-~~~~~~------------------------------------------------------------   87 (217)
                      +++.|.+++.+.. ..+..+                                                            
T Consensus       333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~  412 (876)
T 4ecn_A          333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP  412 (876)
T ss_dssp             TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred             CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence            9998776542100 000000                                                            


Q ss_pred             ---------------------------cCCCCCCCCCccEEECCCCcCCC-----------------ccCcchhhccc--
Q 045099           88 ---------------------------DLSLFPPFQELQSLDLSENWFGG-----------------VSESKAYNSSG--  121 (217)
Q Consensus        88 ---------------------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~~~~~--  121 (217)
                                                 -+..+..+++|++|++++|.+++                 .+|.    .++  
T Consensus       413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f~  488 (876)
T 4ecn_A          413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWS  488 (876)
T ss_dssp             TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGG
T ss_pred             cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhhc
Confidence                                       11234556666666666666666                 2444    444  


Q ss_pred             CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcc-ccC-ccchHhhcCC-------CCCCEEEccCCcCccccccc
Q 045099          122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNS-IEG-SRTKQGLANL-------RYLQVLDLSGNPITGRFIAR  192 (217)
Q Consensus       122 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~l-------~~L~~L~L~~n~l~~~~p~~  192 (217)
                      .+++|++|+|++|.+.+.+|..++.+++|+.|++++|+ +++ .+|. .+..+       ++|++|++++|.++ .+|..
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~  566 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS  566 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence            66666777776666666666666666667777776666 665 4554 33333       36677777776666 34420


Q ss_pred             ccccCCCCCCEEeccCCCCCCCC
Q 045099          193 LGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       193 ~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ..+..+++|+.|++++|+++.+|
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp  589 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLE  589 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhhcCCCCCEEECCCCCcccch
Confidence            13566667777777777666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.6e-24  Score=175.25  Aligned_cols=194  Identities=19%  Similarity=0.203  Sum_probs=129.1

Q ss_pred             CCCCHHHHHHHHHHHhhhhccCCCCccccccCCCcC--CCCCCCccccceEEcC--------CCCcEEEEecCCccccCC
Q 045099            5 DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVD--DGISDCCDWERLKCNA--------TAGRVTELSLNRLKHYKS   74 (217)
Q Consensus         5 ~~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~--~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~   74 (217)
                      .++...|++||++||..+..+.     .+++..|..  .....+|.|.|+.|+.        ...+|+.++++++.+. .
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~-----~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~   95 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADR-----NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q   95 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCC-----TTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-S
T ss_pred             cccCchHHHHHHHHHHhccCCc-----hhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-h
Confidence            4466789999999999985443     256788941  1246899999999952        3478999999999887 3


Q ss_pred             CCCCCC-C----------CCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHH
Q 045099           75 SNPNNS-S----------DGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY  143 (217)
Q Consensus        75 ~~~~~~-~----------~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  143 (217)
                      +++... .          +.+..+ +..+..+++|++|++++|.++ .+|.    .+..+++|++|++++|.+.+.+|..
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~-~lp~----~l~~l~~L~~L~L~~n~~~~~~p~~  169 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLR-ALPA----SIASLNRLRELSIRACPELTELPEP  169 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCCCC-CSCGGGGTTCSEEEEESCCCC-CCCG----GGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred             cChhhhhCCCCCEEECCCCCccch-hHHHhccCCCCEEECCCCccc-cCcH----HHhcCcCCCEEECCCCCCccccChh
Confidence            333211 0          111111 223556667777777777776 3344    5666777777777776666666665


Q ss_pred             hhc---------CCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          144 LNT---------LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       144 ~~~---------l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +..         +++|++|++++|+++ .+|. .+..+++|++|++++|.+++ +|.  .+..+++|++|++++|++.+.
T Consensus       170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~N~l~~-l~~--~l~~l~~L~~L~Ls~n~~~~~  244 (328)
T 4fcg_A          170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPLSA-LGP--AIHHLPKLEELDLRGCTALRN  244 (328)
T ss_dssp             SEEEC-CCCEEESTTCCEEEEEEECCC-CCCG-GGGGCTTCCEEEEESSCCCC-CCG--GGGGCTTCCEEECTTCTTCCB
T ss_pred             HhhccchhhhccCCCCCEEECcCCCcC-cchH-hhcCCCCCCEEEccCCCCCc-Cch--hhccCCCCCEEECcCCcchhh
Confidence            543         677777777777776 5665 57777777777777777775 555  667777777777777776554


Q ss_pred             C
Q 045099          215 P  215 (217)
Q Consensus       215 p  215 (217)
                      .
T Consensus       245 ~  245 (328)
T 4fcg_A          245 Y  245 (328)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=6.8e-21  Score=147.50  Aligned_cols=151  Identities=23%  Similarity=0.302  Sum_probs=129.8

Q ss_pred             CCCCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccC
Q 045099           43 ISDCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSE  113 (217)
Q Consensus        43 ~~~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  113 (217)
                      +...|.|.++.|...         ...++.++++++.+.             .+.+..+..+++|++|++++|.++...+
T Consensus        15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~-------------~~~~~~~~~l~~L~~L~L~~N~l~~i~~   81 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQIT-------------KLEPGVFDSLINLKELYLGSNQLGALPV   81 (229)
T ss_dssp             TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccC-------------ccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence            468999999999742         246778888888877             2345668889999999999999988776


Q ss_pred             cchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccc
Q 045099          114 SKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL  193 (217)
Q Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~  193 (217)
                      .    .|..+++|++|+|++|.+++..+..+..+++|+.|++++|+++ .+|. .+..+++|++|++++|++++..+.  
T Consensus        82 ~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~~~--  153 (229)
T 3e6j_A           82 G----VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIPHG--  153 (229)
T ss_dssp             T----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCCTT--
T ss_pred             h----hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCccCHH--
Confidence            5    6789999999999999999776777889999999999999998 6776 688999999999999999986656  


Q ss_pred             cccCCCCCCEEeccCCCCCCC
Q 045099          194 GLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       194 ~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      .+..+++|+.|++++|.+...
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTT
T ss_pred             HHhCCCCCCEEEeeCCCccCC
Confidence            788999999999999998754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.3e-20  Score=146.27  Aligned_cols=120  Identities=28%  Similarity=0.328  Sum_probs=62.9

Q ss_pred             CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099           90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL  169 (217)
Q Consensus        90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~  169 (217)
                      ..+..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+
T Consensus        53 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~  127 (251)
T 3m19_A           53 ATFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVF  127 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred             hHhcCcccCCEEECCCCcCCccCHh----HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC-cChhHh
Confidence            3455555555555555555555443    44555555555555555554444445555555555555555553 333234


Q ss_pred             cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..+++|++|++++|.+++..+.  .+..+++|++|+|++|+++++++
T Consensus       128 ~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          128 DRLTKLKELRLNTNQLQSIPAG--AFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ccCCcccEEECcCCcCCccCHH--HcCcCcCCCEEECCCCcCCccCH
Confidence            4555555555555555544333  44555555555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=5.3e-20  Score=140.12  Aligned_cols=152  Identities=22%  Similarity=0.225  Sum_probs=127.3

Q ss_pred             CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099           45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK  115 (217)
Q Consensus        45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  115 (217)
                      -.|.|.++.|...         ..+++.++++++.+.             .+....+..+++|++|++++|.+++..+. 
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-   70 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK-------------SLPNGVFDELTSLTQLYLGGNKLQSLPNG-   70 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC-------------CCCTTTTTTCTTCSEEECCSSCCCCCCTT-
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC-------------cCChhhhcccccCcEEECCCCccCccChh-
Confidence            4589999999642         235788888888776             23445678899999999999999987765 


Q ss_pred             hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccc
Q 045099          116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL  195 (217)
Q Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l  195 (217)
                         .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++|++|++++|.+++..+.  .+
T Consensus        71 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~  144 (208)
T 2o6s_A           71 ---VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDG--VF  144 (208)
T ss_dssp             ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT--TT
T ss_pred             ---hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHH--Hh
Confidence               67899999999999999997666678899999999999999985 5544688999999999999999986655  68


Q ss_pred             cCCCCCCEEeccCCCCCCCCC
Q 045099          196 SSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       196 ~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..+++|++|++++|.+.+..+
T Consensus       145 ~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          145 DRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             TTCTTCCEEECCSCCBCCCTT
T ss_pred             ccCCCccEEEecCCCeecCCC
Confidence            899999999999999877644

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=7.3e-20  Score=144.89  Aligned_cols=119  Identities=26%  Similarity=0.293  Sum_probs=78.9

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      .|..+++|++|++++|.++...+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ++...+.
T Consensus        80 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~  154 (270)
T 2o6q_A           80 IFKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD  154 (270)
T ss_dssp             TTSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred             hhcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHcc
Confidence            345556666666666666655544    45666677777777777766555566667777777777777764 4443566


Q ss_pred             CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      .+++|++|++++|.+++..+.  .+..+++|++|++++|+++++|+
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEG--AFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCcccceeEecCCcCcEeChh--HhccCCCcCEEECCCCcCCcCCH
Confidence            777777777777777765444  56677777777777777777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=1.1e-19  Score=139.95  Aligned_cols=148  Identities=24%  Similarity=0.369  Sum_probs=125.7

Q ss_pred             CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099           45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK  115 (217)
Q Consensus        45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  115 (217)
                      -.|.|..+.|...         ...++.++++++.+.             .+....|..+++|++|++++|.+++..+. 
T Consensus         9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~-------------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-   74 (220)
T 2v9t_B            9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIK-------------VIPPGAFSPYKKLRRIDLSNNQISELAPD-   74 (220)
T ss_dssp             SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCC-------------EECTTSSTTCTTCCEEECCSSCCCEECTT-
T ss_pred             CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCC-------------CcCHhHhhCCCCCCEEECCCCcCCCcCHH-
Confidence            3478888888642         236778888887766             45566788999999999999999998887 


Q ss_pred             hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccc
Q 045099          116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL  195 (217)
Q Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l  195 (217)
                         .|..+++|++|+|++|.++...+..+..+++|++|++++|++++..+. .+..+++|++|+|++|.+++..+.  .+
T Consensus        75 ---~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~~  148 (220)
T 2v9t_B           75 ---AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKG--TF  148 (220)
T ss_dssp             ---TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTT--TT
T ss_pred             ---HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEECHH--HH
Confidence               889999999999999999965556678899999999999999965454 799999999999999999987666  78


Q ss_pred             cCCCCCCEEeccCCCCC
Q 045099          196 SSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       196 ~~l~~L~~L~l~~N~l~  212 (217)
                      ..+++|+.|++++|.+.
T Consensus       149 ~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTCTTCCEEECCSSCEE
T ss_pred             hCCCCCCEEEeCCCCcC
Confidence            89999999999999874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.3e-19  Score=139.44  Aligned_cols=150  Identities=23%  Similarity=0.313  Sum_probs=125.2

Q ss_pred             CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceee-cCCCCCCCCCccEEECCCCcCCCccCc
Q 045099           45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIIL-DLSLFPPFQELQSLDLSENWFGGVSES  114 (217)
Q Consensus        45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~  114 (217)
                      -.|.|..+.|...         ...++.++++++.+.             .+ ....|..+++|++|++++|.+++..+.
T Consensus         9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~-------------~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~   75 (220)
T 2v70_A            9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFT-------------VLEATGIFKKLPQLRKINFSNNKITDIEEG   75 (220)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC-------------EECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred             CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCC-------------ccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence            3467888887532         124566777777665             23 234578899999999999999998876


Q ss_pred             chhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccccccc
Q 045099          115 KAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG  194 (217)
Q Consensus       115 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  194 (217)
                          .|..+++|++|+|++|.+++..+..+..+++|++|++++|++++..|. .+..+++|++|+|++|.+++..|.  .
T Consensus        76 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~  148 (220)
T 2v70_A           76 ----AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPG--A  148 (220)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTT--T
T ss_pred             ----HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHH--H
Confidence                789999999999999999988888899999999999999999975554 789999999999999999997788  8


Q ss_pred             ccCCCCCCEEeccCCCCCCC
Q 045099          195 LSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       195 l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +..+++|+.|++++|.+...
T Consensus       149 ~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          149 FDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTTCTTCCEEECCSCCEECS
T ss_pred             hcCCCCCCEEEecCcCCcCC
Confidence            99999999999999998643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.79  E-value=3e-19  Score=160.25  Aligned_cols=95  Identities=32%  Similarity=0.383  Sum_probs=86.3

Q ss_pred             ccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCC
Q 045099          120 SGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLR  199 (217)
Q Consensus       120 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~  199 (217)
                      +..+++|++|++++|+++|.+|..++.++.|+.|++++|+++|.+|. .+..+++|+.|+|++|+++|.+|.  .+..++
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip~--~l~~l~  704 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQ--AMSALT  704 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECCCG--GGGGCC
T ss_pred             hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcCCh--HHhCCC
Confidence            34467899999999999999999999999999999999999999997 899999999999999999999998  899999


Q ss_pred             CCCEEeccCCCCCCCCCC
Q 045099          200 NLKRLDLSNNYGFTTPSQ  217 (217)
Q Consensus       200 ~L~~L~l~~N~l~~~p~~  217 (217)
                      +|++|++++|+++|..|+
T Consensus       705 ~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          705 MLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCSEEECCSSEEEEECCS
T ss_pred             CCCEEECcCCcccccCCC
Confidence            999999999999887653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=4.2e-18  Score=133.36  Aligned_cols=149  Identities=23%  Similarity=0.261  Sum_probs=123.1

Q ss_pred             CcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK  127 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~  127 (217)
                      ..++.++++++.+.+..+...           +.+.+..+....+..+++|++|++++|.+++..+.    .|..+++|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~  110 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLD  110 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh----HhcccCCCC
Confidence            357788888888775543221           11333444455688899999999999999988876    788999999


Q ss_pred             EEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEecc
Q 045099          128 ILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS  207 (217)
Q Consensus       128 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~  207 (217)
                      +|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++|++|++++|++++..+.  .+..+++|+.|+++
T Consensus       111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~  187 (251)
T 3m19_A          111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTITLF  187 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECC
T ss_pred             EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHH--HHhCCCCCCEEEee
Confidence            99999999997666678899999999999999995 5544788999999999999999987776  78899999999999


Q ss_pred             CCCCCCC
Q 045099          208 NNYGFTT  214 (217)
Q Consensus       208 ~N~l~~~  214 (217)
                      +|++...
T Consensus       188 ~N~~~c~  194 (251)
T 3m19_A          188 GNQFDCS  194 (251)
T ss_dssp             SCCBCTT
T ss_pred             CCceeCC
Confidence            9999775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=4.8e-18  Score=134.40  Aligned_cols=163  Identities=21%  Similarity=0.226  Sum_probs=115.5

Q ss_pred             CCccccceEEcCCCCcEEEEecCCccccCCCCCC---------CCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099           45 DCCDWERLKCNATAGRVTELSLNRLKHYKSSNPN---------NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK  115 (217)
Q Consensus        45 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  115 (217)
                      ++|.|.|+.|.- ...++.++++++.+.. ++..         .+.+.+..+....|..+++|++|++++|.++...+. 
T Consensus         3 ~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~-   79 (270)
T 2o6q_A            3 ALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG-   79 (270)
T ss_dssp             CCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT-
T ss_pred             ccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh-
Confidence            678888887753 2344566666666553 2211         111233344445677788888888888888876654 


Q ss_pred             hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccc
Q 045099          116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL  195 (217)
Q Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l  195 (217)
                         .|..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++..+.  .+
T Consensus        80 ---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~  153 (270)
T 2o6q_A           80 ---IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKG--VF  153 (270)
T ss_dssp             ---TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT--TT
T ss_pred             ---hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHh--Hc
Confidence               56778888888888888886666667788888888888888875 4443677888888888888888875544  57


Q ss_pred             cCCCCCCEEeccCCCCCCCCC
Q 045099          196 SSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       196 ~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..+++|++|++++|+++++++
T Consensus       154 ~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCcccceeEecCCcCcEeCh
Confidence            788888888888888887765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.78  E-value=1.3e-18  Score=151.90  Aligned_cols=138  Identities=26%  Similarity=0.267  Sum_probs=121.3

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..++.++|++|.+.             .+....|..+++|++|+|++|.|++..+.    .|.++++|++|+|++|++++
T Consensus        52 ~~~~~LdLs~N~i~-------------~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-------------HLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCE
T ss_pred             cCCCEEEeeCCCCC-------------CCCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCC
Confidence            46788888888876             56677899999999999999999998876    78999999999999999997


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc-ccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR-FIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..+..|..+++|++|++++|++++ ++...+..+++|++|++++|.+++. +|.  .+..+++|++|++++|+++++++
T Consensus       115 l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          115 LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCch--hhccchhhhhhcccCcccccccc
Confidence            777789999999999999999985 5554789999999999999999863 566  78899999999999999988764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=4.4e-18  Score=140.13  Aligned_cols=151  Identities=26%  Similarity=0.277  Sum_probs=121.9

Q ss_pred             CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCC-CCCCccEEECCCCcCCCccCcc
Q 045099           46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFP-PFQELQSLDLSENWFGGVSESK  115 (217)
Q Consensus        46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~  115 (217)
                      .|.+..+.|...         ...++.++++++.+.             .+....+. .+++|++|++++|.+++..+. 
T Consensus        17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~-------------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-   82 (361)
T 2xot_A           17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLS-------------RLRAEWTPTRLTNLHSLLLSHNHLNFISSE-   82 (361)
T ss_dssp             EEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCC-------------EECTTSSSSCCTTCCEEECCSSCCCEECTT-
T ss_pred             EECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCC-------------ccChhhhhhcccccCEEECCCCcCCccChh-
Confidence            467777777531         124566777777665             44555666 899999999999999998876 


Q ss_pred             hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccc
Q 045099          116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL  195 (217)
Q Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l  195 (217)
                         .|..+++|++|+|++|+++...+..|..+++|+.|+|++|++++..+ ..+..+++|++|+|++|.+++..+.  .+
T Consensus        83 ---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~--~~  156 (361)
T 2xot_A           83 ---AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVE--LI  156 (361)
T ss_dssp             ---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGG--GT
T ss_pred             ---hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHH--Hh
Confidence               78999999999999999997777788999999999999999986444 4799999999999999999974333  34


Q ss_pred             ---cCCCCCCEEeccCCCCCCCCC
Q 045099          196 ---SSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       196 ---~~l~~L~~L~l~~N~l~~~p~  216 (217)
                         ..+++|+.|+|++|+|+++|+
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCCCH
T ss_pred             cCcccCCcCCEEECCCCCCCccCH
Confidence               578999999999999998874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=5.4e-18  Score=134.26  Aligned_cols=150  Identities=23%  Similarity=0.199  Sum_probs=104.2

Q ss_pred             CcEEEEecCCccccCCCCCC----------CCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCE
Q 045099           59 GRVTELSLNRLKHYKSSNPN----------NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKI  128 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~  128 (217)
                      ..++.++++++.+.+. +.-          .+.+.+..+....+..+++|++|++++|.+++..+.    .+..+++|++
T Consensus        63 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~  137 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTY  137 (272)
T ss_dssp             TTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCE
T ss_pred             CCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCE
Confidence            4667777777776642 110          111222333344567778888888888888876665    5677888888


Q ss_pred             EEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccC
Q 045099          129 LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN  208 (217)
Q Consensus       129 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~  208 (217)
                      |++++|.+++..+..+..+++|+.|++++|++++ ++...+..+++|++|++++|.+++..+.  .+..+++|+.|++++
T Consensus       138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDG--VFDRLTSLQYIWLHD  214 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCS
T ss_pred             EECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCCccCHH--HHhCCcCCCEEEccC
Confidence            8888888876666667778888888888888875 4433567778888888888888876665  677788888888888


Q ss_pred             CCCCCCCC
Q 045099          209 NYGFTTPS  216 (217)
Q Consensus       209 N~l~~~p~  216 (217)
                      |.+.+..+
T Consensus       215 N~~~~~~~  222 (272)
T 3rfs_A          215 NPWDCTCP  222 (272)
T ss_dssp             SCBCCCTT
T ss_pred             CCccccCc
Confidence            88776543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=8.7e-18  Score=133.09  Aligned_cols=120  Identities=28%  Similarity=0.264  Sum_probs=104.0

Q ss_pred             CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099           90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL  169 (217)
Q Consensus        90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~  169 (217)
                      +.+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+
T Consensus        79 ~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~  153 (272)
T 3rfs_A           79 SALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVF  153 (272)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred             hhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHh
Confidence            3577889999999999999988776    67889999999999999997777778899999999999999985 444467


Q ss_pred             cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..+++|++|++++|.+++..+.  .+..+++|++|++++|+++++++
T Consensus       154 ~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          154 DKLTNLTELDLSYNQLQSLPEG--VFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ccCccCCEEECCCCCcCccCHH--HhcCCccCCEEECCCCcCCccCH
Confidence            8899999999999999986665  67889999999999999998876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=5.1e-18  Score=143.23  Aligned_cols=154  Identities=23%  Similarity=0.224  Sum_probs=111.2

Q ss_pred             CCccccc--eEEcCC--------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCc
Q 045099           45 DCCDWER--LKCNAT--------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSES  114 (217)
Q Consensus        45 ~~c~w~g--v~c~~~--------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  114 (217)
                      ..|.|.+  +.|...        ..+++.++++++.+.             .+.+..+..+++|++|++++|.+.+.++.
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~~~~~i~~   72 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIA-------------ELNETSFSRLQDLQFLKVEQQTPGLVIRN   72 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCC-------------EECTTTTSSCTTCCEEECCCCSTTCEECT
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccC-------------cCChhHhccCccccEEECcCCcccceECc
Confidence            3455554  677542        256888999998877             34455677788888888888887755532


Q ss_pred             chhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCcCcccccccc
Q 045099          115 KAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNPITGRFIARL  193 (217)
Q Consensus       115 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p~~~  193 (217)
                      .   .|..+++|++|++++|.+++..|..+..+++|++|++++|++++.++. ..+..+++|++|++++|.+++..|.  
T Consensus        73 ~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--  147 (455)
T 3v47_A           73 N---TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA--  147 (455)
T ss_dssp             T---TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC--
T ss_pred             c---cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc--
Confidence            1   577788888888888888877777788888888888888888764443 1267778888888888888876565  


Q ss_pred             c-ccCCCCCCEEeccCCCCCCCCC
Q 045099          194 G-LSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       194 ~-l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      . +..+++|++|++++|+++++++
T Consensus       148 ~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A          148 SFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             GGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             cccCCCCcccEEeCCCCcccccCh
Confidence            4 6778888888888888877654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.2e-17  Score=128.48  Aligned_cols=114  Identities=25%  Similarity=0.310  Sum_probs=105.4

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      +.|++|++++|.+++..+.    .|..+++|++|+|++|.+++..|..|..+++|++|++++|+++ .+|...+..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCC
Confidence            6799999999999998876    7899999999999999999888999999999999999999999 4666568899999


Q ss_pred             CEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       176 ~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ++|+|++|.+++..+.  .+..+++|++|+|++|+++++++
T Consensus       107 ~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B          107 QLLLLNANKINCLRVD--AFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             CEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CEEECCCCCCCEeCHH--HcCCCCCCCEEECCCCcCCEECH
Confidence            9999999999998787  89999999999999999999876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=9.3e-18  Score=133.58  Aligned_cols=151  Identities=23%  Similarity=0.243  Sum_probs=111.9

Q ss_pred             CcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCc-CCCccCcchhhcccCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENW-FGGVSESKAYNSSGNLKQL  126 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~l~~L  126 (217)
                      ..++.++++++.+.+..+...           +.+.+..+.+..+..+++|++|++++|. ++...+.    .+..+++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L  107 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRL  107 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTC
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCC
Confidence            467778888877764322111           1123334445567788888888888886 7766565    67788888


Q ss_pred             CEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099          127 KILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL  206 (217)
Q Consensus       127 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l  206 (217)
                      ++|++++|.+++..|..+..+++|++|++++|++++ ++...+..+++|++|++++|.+++..+.  .+..+++|++|++
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l  184 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLL  184 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEEC
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCcccccCHH--HhcCccccCEEEC
Confidence            888888888887777778888888889998888875 4443677888899999998888875555  6788888999999


Q ss_pred             cCCCCCCCCC
Q 045099          207 SNNYGFTTPS  216 (217)
Q Consensus       207 ~~N~l~~~p~  216 (217)
                      ++|+++++++
T Consensus       185 ~~n~l~~~~~  194 (285)
T 1ozn_A          185 HQNRVAHVHP  194 (285)
T ss_dssp             CSSCCCEECT
T ss_pred             CCCcccccCH
Confidence            9988877643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=1.5e-17  Score=125.23  Aligned_cols=112  Identities=25%  Similarity=0.276  Sum_probs=99.4

Q ss_pred             CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099           97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ  176 (217)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  176 (217)
                      .|++|++++|.+++..+..   .|..+++|++|+|++|.+++..|..+..+++|++|++++|++++..+. .+..+++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~  105 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK-MFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS-SSTTCTTCC
T ss_pred             CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH-HhcCCCCCC
Confidence            7899999999999877631   378899999999999999988889999999999999999999965443 688899999


Q ss_pred             EEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       177 ~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +|++++|++++..|.  .+..+++|++|++++|.+.+.
T Consensus       106 ~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          106 TLNLYDNQISCVMPG--SFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EEECCSSCCCEECTT--SSTTCTTCCEEECTTCCBCCS
T ss_pred             EEECCCCcCCeeCHH--HhhcCCCCCEEEeCCCCccCc
Confidence            999999999998888  889999999999999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.75  E-value=8.9e-18  Score=146.61  Aligned_cols=138  Identities=28%  Similarity=0.285  Sum_probs=107.6

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.             .+....|..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++
T Consensus        32 ~~l~~L~Ls~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~   94 (606)
T 3vq2_A           32 SSTKNIDLSFNPLK-------------ILKSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQS   94 (606)
T ss_dssp             TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCC
T ss_pred             CCcCEEECCCCCcC-------------EeChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccc
Confidence            57888899888876             34455677888888888888888877766    67788888888888888887


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc-cccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG-RFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..|..++.+++|++|++++|.+++..+. .+..+++|++|++++|.+++ .+|.  .++++++|++|++++|+++++++
T Consensus        95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~--~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           95 FSPGSFSGLTSLENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPA--YFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCTTSSTTCTTCCEEECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCG--GGGTCTTCCEEECCSSCCCEECT
T ss_pred             cChhhcCCcccCCEEEccCCcccccccc-ccCCCCCCCEEeCCCCcccceechH--hHhhcCCCCEEEccCCcceecCh
Confidence            7777888888888888888888753333 57788888888888888875 4576  77888888888888888877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=1.2e-17  Score=132.93  Aligned_cols=151  Identities=22%  Similarity=0.184  Sum_probs=107.7

Q ss_pred             CcEEEEecCCccccCCCCCCC-----------CCCC-ceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNN-----------SSDG-VIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL  126 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L  126 (217)
                      .+++.++++++.+.+..+...           +.+. +..+.+..+..+++|++|++++|.+++..+.    .+..+++|
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L  131 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAAL  131 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTC
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCC
Confidence            356667777666554322111           1111 3334455677788888888888888887665    67778888


Q ss_pred             CEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099          127 KILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL  206 (217)
Q Consensus       127 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l  206 (217)
                      ++|++++|.+++..+..+..+++|+.|++++|++++ ++...+..+++|++|++++|.+++..|.  .+..+++|+.|++
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l  208 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPH--AFRDLGRLMTLYL  208 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEEC
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCCCcccccCHh--HccCcccccEeeC
Confidence            888888888886666667788888888888888874 4443577788888888888888877676  7778888888888


Q ss_pred             cCCCCCCCCC
Q 045099          207 SNNYGFTTPS  216 (217)
Q Consensus       207 ~~N~l~~~p~  216 (217)
                      ++|+++++++
T Consensus       209 ~~n~l~~~~~  218 (285)
T 1ozn_A          209 FANNLSALPT  218 (285)
T ss_dssp             CSSCCSCCCH
T ss_pred             CCCcCCcCCH
Confidence            8888877763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.75  E-value=5.9e-18  Score=138.72  Aligned_cols=151  Identities=25%  Similarity=0.271  Sum_probs=99.1

Q ss_pred             CCCCccccceEEcCC-----------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCc
Q 045099           43 ISDCCDWERLKCNAT-----------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGV  111 (217)
Q Consensus        43 ~~~~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  111 (217)
                      ....|.|.++ |+..           ...++.++++++.+.             .+....+..+++|++|++++|.+++.
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-------------YISNSDLQRCVNLQALVLTSNGINTI   91 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCc-------------ccCHHHhccCCCCCEEECCCCccCcc
Confidence            4578999987 6531           236778888888766             33444566777777777777777766


Q ss_pred             cCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCc-Ccccc
Q 045099          112 SESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNP-ITGRF  189 (217)
Q Consensus       112 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~-l~~~~  189 (217)
                      .+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ +|. ..+..+++|++|++++|. ++...
T Consensus        92 ~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~  166 (353)
T 2z80_A           92 EED----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQ  166 (353)
T ss_dssp             CTT----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             CHh----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccC
Confidence            555    56677777777777777775444456677777777777777763 443 246666777777777763 44443


Q ss_pred             cccccccCCCCCCEEeccCCCCCCC
Q 045099          190 IARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       190 p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +.  .+..+++|++|++++|+++++
T Consensus       167 ~~--~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          167 RK--DFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             TT--TTTTCCEEEEEEEEETTCCEE
T ss_pred             HH--HccCCCCCCEEECCCCCcCcc
Confidence            44  566666666666666666655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=1.6e-17  Score=123.21  Aligned_cols=114  Identities=22%  Similarity=0.210  Sum_probs=95.5

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY  174 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~  174 (217)
                      .++|++|++++|.+++..+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~  101 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQ  101 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCcc
Confidence            36789999999999987765    67889999999999999987666667889999999999999985 44446788999


Q ss_pred             CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      |++|++++|.+++..+.  .+..+++|++|++++|.+.+.+
T Consensus       102 L~~L~l~~N~l~~~~~~--~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          102 LKELALDTNQLKSVPDG--IFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCEEECcCCcceEeCHH--HhcCCcccCEEEecCCCeeccC
Confidence            99999999999975554  5678999999999999988754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=1.1e-18  Score=155.56  Aligned_cols=191  Identities=15%  Similarity=0.057  Sum_probs=116.8

Q ss_pred             CCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCccccceEEcCCCCcEEEEecCCccccCCCCCCC-----CC
Q 045099            7 CLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNN-----SS   81 (217)
Q Consensus         7 ~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~-----~~   81 (217)
                      ....+++++++++..+....     +..-..|.. .....+.|.++.+..  .+++.+++.++.+........     +.
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~  200 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSK-----TAKKQQPTG-DSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQ  200 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHH-----TTC----------------------------------------------------
T ss_pred             ccccchhhhhhhhhhccccc-----CcccCCCcC-CCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCc
Confidence            34567889999998886665     344556754 234567888877753  578888887766654211110     00


Q ss_pred             CCce---------eecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCE
Q 045099           82 DGVI---------ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTT  152 (217)
Q Consensus        82 ~~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  152 (217)
                      ..+.         .+....+..+..|+.|+|++|.+... +.    .+..+++|++|+|++|.|+ .+|..+..+++|++
T Consensus       201 ~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  274 (727)
T 4b8c_D          201 YSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI-SA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV  274 (727)
T ss_dssp             ---------------------CCCCCCEEECTTSCCSCC-CG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE
T ss_pred             ccccCccccccceecChhhhccCCCCcEEECCCCCCCCC-Ch----hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE
Confidence            1111         12345678899999999999999854 44    5668999999999999999 78999999999999


Q ss_pred             EEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          153 LILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       153 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      |+|++|+|+ .+|. .+..+++|++|+|++|.++ .+|.  .++.+++|+.|+|++|+|++.+|
T Consensus       275 L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-~lp~--~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          275 LDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-TLPW--EFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             EECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-CCCS--STTSCTTCCCEECTTSCCCSHHH
T ss_pred             EeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-ccCh--hhhcCCCccEEeCCCCccCCCCh
Confidence            999999999 6887 7999999999999999998 5788  89999999999999999998654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=6.5e-18  Score=145.75  Aligned_cols=149  Identities=21%  Similarity=0.240  Sum_probs=117.7

Q ss_pred             CccccceEEcCC-----------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCc
Q 045099           46 CCDWERLKCNAT-----------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSES  114 (217)
Q Consensus        46 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  114 (217)
                      .|.|.++ |+..           ..+++.++++++.+.             .+.+..+..+++|++|++++|.+++..+.
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKIT-------------YIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCC-------------EECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccC-------------ccChhhhhcCCcccEEECCCCCcCccChh
Confidence            5889888 7632           236788888888776             34455678889999999999999887776


Q ss_pred             chhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCc-cchHhhcCCCCCCEEEccCCcCccccc-cc
Q 045099          115 KAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGS-RTKQGLANLRYLQVLDLSGNPITGRFI-AR  192 (217)
Q Consensus       115 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~  192 (217)
                          .|..+++|++|++++|.+++..|..++.+++|++|++++|.+++. +|. .+..+++|++|++++|.+.+.+| . 
T Consensus        69 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~-  142 (549)
T 2z81_A           69 ----AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRI-  142 (549)
T ss_dssp             ----TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTT-
T ss_pred             ----hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHh-
Confidence                788889999999999999887777788899999999999988752 343 67888899999999888554454 4 


Q ss_pred             ccccCCCCCCEEeccCCCCCCCC
Q 045099          193 LGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       193 ~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                       .+..+++|++|++++|++++..
T Consensus       143 -~~~~l~~L~~L~L~~n~l~~~~  164 (549)
T 2z81_A          143 -DFAGLTSLNELEIKALSLRNYQ  164 (549)
T ss_dssp             -TTTTCCEEEEEEEEETTCCEEC
T ss_pred             -hhhcccccCeeeccCCcccccC
Confidence             6788888888888888887643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=1.5e-17  Score=131.85  Aligned_cols=137  Identities=26%  Similarity=0.276  Sum_probs=85.3

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..++.++++++.+.+             +....+..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++
T Consensus        28 ~~l~~L~ls~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           28 FSTKNLDLSFNPLRH-------------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             TTCCEEECTTCCCCE-------------ECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCE
T ss_pred             CCccEEECCCCcccc-------------cCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCc
Confidence            357888888887762             3333456666666666666666665554    55666666666666666665


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc-ccccccccCCCCCCEEeccCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR-FIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++. +|.  .+..+++|++|++++|++++++
T Consensus        91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~--~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           91 LALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEEC
T ss_pred             cChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceecCch--hhccCCCCCEEECCCCCCCcCC
Confidence            555566666666666666666664322 2455666666666666666652 355  5666666666666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=1e-17  Score=123.29  Aligned_cols=137  Identities=28%  Similarity=0.255  Sum_probs=116.7

Q ss_pred             CcEEEEecCCcccc-CCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099           59 GRVTELSLNRLKHY-KSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN  137 (217)
Q Consensus        59 ~~v~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  137 (217)
                      ..++.++++++.+. +.+             +..+..+++|++|++++|.+++.  .    .+..+++|++|++++|.++
T Consensus        24 ~~L~~L~l~~n~l~~~~i-------------~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~   84 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKI-------------EGLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIF   84 (168)
T ss_dssp             TSCSEEECCSCBCBTTBC-------------SSCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCC
T ss_pred             ccCCEEECCCCCCChhhH-------------HHHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCc
Confidence            57889999998876 322             23367789999999999999987  3    7889999999999999999


Q ss_pred             ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc---ccccccCCCCCCEEeccCCCCCCC
Q 045099          138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI---ARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +.+|..+..+++|++|++++|.+++......+..+++|++|++++|.+++..+   .  .+..+++|++|++++|.+..+
T Consensus        85 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES--VFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHH--HHTTCSSCCEETTEETTSCBC
T ss_pred             hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHH--HHHhCccCcEecCCCCChhhc
Confidence            87888888899999999999999863221368899999999999999998655   4  678999999999999999988


Q ss_pred             CC
Q 045099          215 PS  216 (217)
Q Consensus       215 p~  216 (217)
                      |.
T Consensus       163 ~~  164 (168)
T 2ell_A          163 PD  164 (168)
T ss_dssp             CS
T ss_pred             cc
Confidence            75

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=3.7e-17  Score=137.92  Aligned_cols=123  Identities=24%  Similarity=0.236  Sum_probs=106.0

Q ss_pred             ecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch
Q 045099           87 LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK  166 (217)
Q Consensus        87 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~  166 (217)
                      +.+..+..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++..|..+..+++|++|++++|++++..|.
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  365 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ  365 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             cchhhcccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence            3455678889999999999999988776    788899999999999999887788889999999999999999865554


Q ss_pred             HhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          167 QGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       167 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                       .+..+++|++|++++|++++..+.  .+..+++|++|++++|++++..+
T Consensus       366 -~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          366 -SFLGLPNLKELALDTNQLKSVPDG--IFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             -TTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCBCCCTT
T ss_pred             -hccccccccEEECCCCccccCCHh--HhccCCcccEEEccCCCcccCCC
Confidence             788899999999999999986555  67889999999999999988654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=9.1e-17  Score=124.19  Aligned_cols=139  Identities=24%  Similarity=0.255  Sum_probs=115.2

Q ss_pred             ccceEEcCCCCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCE
Q 045099           49 WERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKI  128 (217)
Q Consensus        49 w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~  128 (217)
                      |..-.|..     +.++.+++.+.             .++..   -.++|++|++++|.+++..+.    .|..+++|++
T Consensus        14 ~~~~~Cs~-----~~v~c~~~~l~-------------~ip~~---~~~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~   68 (229)
T 3e6j_A           14 PSQCSCSG-----TTVDCRSKRHA-------------SVPAG---IPTNAQILYLHDNQITKLEPG----VFDSLINLKE   68 (229)
T ss_dssp             CTTCEEET-----TEEECTTSCCS-------------SCCSC---CCTTCSEEECCSSCCCCCCTT----TTTTCTTCCE
T ss_pred             CCCCEEeC-----CEeEccCCCcC-------------ccCCC---CCCCCCEEEcCCCccCccCHH----HhhCccCCcE
Confidence            44556753     34777777665             12221   237899999999999998887    7899999999


Q ss_pred             EEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccC
Q 045099          129 LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN  208 (217)
Q Consensus       129 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~  208 (217)
                      |+|++|.++...+..+..+++|+.|++++|++++ ++...+..+++|++|++++|.++ .+|.  .+..+++|++|+|++
T Consensus        69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~lp~--~~~~l~~L~~L~L~~  144 (229)
T 3e6j_A           69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPR--GIERLTHLTHLALDQ  144 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SCCT--TGGGCTTCSEEECCS
T ss_pred             EECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCccc-ccCc--ccccCCCCCEEECCC
Confidence            9999999986666678899999999999999995 55546889999999999999999 4787  889999999999999


Q ss_pred             CCCCCCCC
Q 045099          209 NYGFTTPS  216 (217)
Q Consensus       209 N~l~~~p~  216 (217)
                      |+++++++
T Consensus       145 N~l~~~~~  152 (229)
T 3e6j_A          145 NQLKSIPH  152 (229)
T ss_dssp             SCCCCCCT
T ss_pred             CcCCccCH
Confidence            99999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=4.8e-18  Score=137.30  Aligned_cols=147  Identities=21%  Similarity=0.236  Sum_probs=98.0

Q ss_pred             CcEEEEecCC-ccccCCCCCCCCC-----------CCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCC
Q 045099           59 GRVTELSLNR-LKHYKSSNPNNSS-----------DGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL  126 (217)
Q Consensus        59 ~~v~~l~l~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L  126 (217)
                      ..++.+++++ +.+.+.++.....           +.+....+..+..+++|++|++++|.+++.+|.    .+..+++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L  151 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNL  151 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTC
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCC
Confidence            3567788874 7776655432211           122223344567788888888888888877776    77788888


Q ss_pred             CEEEccCCCCCccchHHhhcCC-CCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEe
Q 045099          127 KILNLGNNRLNDSILSYLNTLT-SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD  205 (217)
Q Consensus       127 ~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~  205 (217)
                      ++|++++|.+++.+|..+..++ +|+.|++++|++++.+|. .+..+. |++|++++|.+++.+|.  .+..+++|+.|+
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~  227 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLEGDASV--LFGSDKNTQKIH  227 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEEECCGG--GCCTTSCCSEEE
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCcccCcCCH--HHhcCCCCCEEE
Confidence            8888888888877888887777 788888888887766665 555554 66666666666655555  555555555555


Q ss_pred             ccCCCCCC
Q 045099          206 LSNNYGFT  213 (217)
Q Consensus       206 l~~N~l~~  213 (217)
                      +++|++++
T Consensus       228 L~~N~l~~  235 (313)
T 1ogq_A          228 LAKNSLAF  235 (313)
T ss_dssp             CCSSEECC
T ss_pred             CCCCceee
Confidence            55555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.72  E-value=4e-17  Score=138.72  Aligned_cols=159  Identities=18%  Similarity=0.167  Sum_probs=76.8

Q ss_pred             ccceEEcC---------CCCcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcC
Q 045099           49 WERLKCNA---------TAGRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWF  108 (217)
Q Consensus        49 w~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  108 (217)
                      |..+.|..         ....++.++++++.+.+..+...           +.+.+..+.+..|..+++|++|++++|.+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            56677753         12467788888888763321110           01122222233444445555555555554


Q ss_pred             CCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc
Q 045099          109 GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR  188 (217)
Q Consensus       109 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  188 (217)
                      +...+.    .|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+. .+..+++|++|++++|.+++.
T Consensus        93 ~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           93 KLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSC
T ss_pred             CccCcc----cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCccc
Confidence            444333    344455555555555555544444444555555555555555432222 444455555555555555543


Q ss_pred             ccccccccCCCCCCEEeccCCCCCCC
Q 045099          189 FIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       189 ~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      .+.  .+..+++|+.|++++|.+.++
T Consensus       168 ~~~--~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          168 PTE--ALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             CHH--HHTTCTTCCEEEEESCCCCEE
T ss_pred             Chh--HhcccCCCcEEeCCCCcCcEe
Confidence            333  344555555555555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=1.1e-16  Score=123.03  Aligned_cols=132  Identities=22%  Similarity=0.213  Sum_probs=111.8

Q ss_pred             EEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchH
Q 045099           63 ELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS  142 (217)
Q Consensus        63 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  142 (217)
                      .++++++.+..             ++. .+  ...+++|++++|.+++..+..   .|..+++|++|++++|.+++..+.
T Consensus        15 ~l~~s~n~l~~-------------iP~-~~--~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~   75 (220)
T 2v70_A           15 TVDCSNQKLNK-------------IPE-HI--PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEG   75 (220)
T ss_dssp             EEECCSSCCSS-------------CCS-CC--CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTT
T ss_pred             EeEeCCCCccc-------------Ccc-CC--CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHH
Confidence            68888887762             111 12  245689999999999986531   578999999999999999987777


Q ss_pred             HhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          143 YLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       143 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      .+..+++|++|++++|++++ ++...+..+++|++|+|++|.+++..|.  .+..+++|++|+|++|+++++++
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGND--SFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTT--SSTTCTTCSEEECTTSCCCCBCT
T ss_pred             HhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHh--HcCCCccCCEEECCCCcCCEECH
Confidence            89999999999999999986 4444799999999999999999998787  88999999999999999999865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.72  E-value=1.3e-17  Score=138.34  Aligned_cols=117  Identities=20%  Similarity=0.215  Sum_probs=77.5

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      .+..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|...+.
T Consensus        64 ~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~  138 (390)
T 3o6n_A           64 LLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH  138 (390)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             HhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhc
Confidence            345566777777777777666554    5666777777777777776655666666777777777777776 35543456


Q ss_pred             CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      .+++|++|++++|.+++..+.  .+..+++|++|++++|+++++
T Consensus       139 ~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          139 NTPKLTTLSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             TCTTCCEEECCSSCCCBCCTT--TTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCCCcEEECCCCccCccChh--hccCCCCCCEEECCCCcCCcc
Confidence            667777777777777665555  566667777777777766654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=1.1e-16  Score=127.95  Aligned_cols=116  Identities=29%  Similarity=0.298  Sum_probs=80.8

Q ss_pred             CCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099           93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL  172 (217)
Q Consensus        93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l  172 (217)
                      ..+++|++|++++|.++.. |.    .+..+++|++|++++|++++..+..+..+++|++|++++|++++ +|...+..+
T Consensus        74 ~~l~~L~~L~Ls~N~l~~l-~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l  147 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQSL-PL----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPT  147 (290)
T ss_dssp             SCCTTCCEEECCSSCCSSC-CC----CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTC
T ss_pred             CCCCcCCEEECCCCcCCcC-ch----hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccc
Confidence            5566777777777777643 32    56677777777777777776555667777777777777777774 444456677


Q ss_pred             CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       173 ~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ++|+.|++++|+++...+.  .+..+++|++|++++|+++.+|+
T Consensus       148 ~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~L~~N~l~~ip~  189 (290)
T 1p9a_G          148 PKLEKLSLANNNLTELPAG--LLNGLENLDTLLLQENSLYTIPK  189 (290)
T ss_dssp             TTCCEEECTTSCCSCCCTT--TTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCEEECCCCcCCccCHH--HhcCcCCCCEEECCCCcCCccCh
Confidence            7777777777777764444  55667777777777777777664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=6.4e-17  Score=129.41  Aligned_cols=135  Identities=28%  Similarity=0.307  Sum_probs=114.6

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..++.++++++.+.             .+....+..+++|++|++++|.+++..+      ...+++|++|++++|.++ 
T Consensus        31 ~~l~~L~L~~N~l~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~-   90 (290)
T 1p9a_G           31 KDTTILHLSENLLY-------------TFSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ-   90 (290)
T ss_dssp             TTCCEEECTTSCCS-------------EEEGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-
T ss_pred             CCCCEEEcCCCcCC-------------ccCHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-
Confidence            35666777776665             3445668889999999999999988654      368999999999999998 


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      .+|..+..+++|++|++++|++++ +++..+..+++|++|++++|++++..+.  .+..+++|+.|++++|+++++|+
T Consensus        91 ~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G           91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG--LLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCSCCCT
T ss_pred             cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChh--hcccccCCCEEECCCCcCCccCH
Confidence            677788899999999999999995 5544789999999999999999986665  77899999999999999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=2.2e-17  Score=144.33  Aligned_cols=122  Identities=19%  Similarity=0.208  Sum_probs=83.6

Q ss_pred             ecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch
Q 045099           87 LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK  166 (217)
Q Consensus        87 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~  166 (217)
                      ++...+..+++|++|++++|.+++.++.    .|..+++|++|+|++|.+++..|..++.+++|++|++++|.+++ +|.
T Consensus        66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~  140 (597)
T 3oja_B           66 LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPR  140 (597)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred             cCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCH
Confidence            3334455667777777777777776665    66677777777777777776666666777777777777777763 444


Q ss_pred             HhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          167 QGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       167 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ..+..+++|++|++++|.+++..|.  .+..+++|+.|++++|.+++++
T Consensus       141 ~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          141 GIFHNTPKLTTLSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTT--TTTTCTTCCEEECTTSCCSBCC
T ss_pred             HHhccCCCCCEEEeeCCcCCCCChh--hhhcCCcCcEEECcCCCCCCcC
Confidence            3456777777777777777766665  6677777777777777776653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=3.2e-16  Score=119.14  Aligned_cols=115  Identities=28%  Similarity=0.278  Sum_probs=101.9

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY  174 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~  174 (217)
                      .++|++|++++|.+++..+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~  101 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQ  101 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccC
Confidence            46899999999999987775    67899999999999999997666678899999999999999995 55546789999


Q ss_pred             CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      |++|++++|.+++..+.  .+..+++|++|++++|+++++++
T Consensus       102 L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDG--VFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             CCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCEEEcCCCcCcccCHh--HhccCCcCCEEECCCCccceeCH
Confidence            99999999999986665  68899999999999999998876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=6.9e-17  Score=116.44  Aligned_cols=129  Identities=26%  Similarity=0.264  Sum_probs=107.6

Q ss_pred             CcEEEEecCCcccc-CCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099           59 GRVTELSLNRLKHY-KSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN  137 (217)
Q Consensus        59 ~~v~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  137 (217)
                      .+++.++++++.+. +.+             +..+..+++|++|++++|.+++.  .    .+..+++|++|++++|.++
T Consensus        17 ~~l~~L~l~~n~l~~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~   77 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKL-------------EGLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVS   77 (149)
T ss_dssp             GGCSEEECTTCBCBTTBC-------------CSCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCC
T ss_pred             ccCeEEEccCCcCChhHH-------------HHHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCccc
Confidence            46788999988876 332             23467889999999999999987  3    7889999999999999999


Q ss_pred             ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc---ccccccCCCCCCEEeccC
Q 045099          138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI---ARLGLSSLRNLKRLDLSN  208 (217)
Q Consensus       138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~l~~l~~L~~L~l~~  208 (217)
                      +.+|..+..+++|++|++++|.+++......+..+++|++|++++|.+++..+   .  .+..+++|++|++++
T Consensus        78 ~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN--VFKLLPQLTYLDGYD  149 (149)
T ss_dssp             SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHH--HHHHCTTCCEETTBC
T ss_pred             chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHH--HHHHCCCcccccCCC
Confidence            87888888899999999999999863211368899999999999999998654   4  678899999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=1.7e-16  Score=134.19  Aligned_cols=159  Identities=19%  Similarity=0.231  Sum_probs=87.0

Q ss_pred             ccceEEcCC---------CCcEEEEecCCccccCCCCCC-----------CCCCCceeecCCCCCCCCCccEEECCCCcC
Q 045099           49 WERLKCNAT---------AGRVTELSLNRLKHYKSSNPN-----------NSSDGVIILDLSLFPPFQELQSLDLSENWF  108 (217)
Q Consensus        49 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  108 (217)
                      |..+.|...         ...++.++++++.+.+..+..           .+.+.+..+....|..+++|++|++++|.+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            567888642         246788899888877432211           111222333334455555555555555555


Q ss_pred             CCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc
Q 045099          109 GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR  188 (217)
Q Consensus       109 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  188 (217)
                      +...+.    .|..+++|++|++++|.++...+..+..+++|+.|++++|+..+.++...+..+++|++|++++|.+++ 
T Consensus       136 ~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          136 TVIPSG----AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             SBCCTT----TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CccChh----hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            554443    455555555555555555543344455555555555555333234444345566666666666666664 


Q ss_pred             ccccccccCCCCCCEEeccCCCCCCCC
Q 045099          189 FIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       189 ~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      +|   .+..+++|+.|+|++|++++++
T Consensus       211 ~~---~~~~l~~L~~L~Ls~N~l~~~~  234 (452)
T 3zyi_A          211 MP---NLTPLVGLEELEMSGNHFPEIR  234 (452)
T ss_dssp             CC---CCTTCTTCCEEECTTSCCSEEC
T ss_pred             cc---cccccccccEEECcCCcCcccC
Confidence            23   3556666777777777666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=6.9e-17  Score=129.70  Aligned_cols=118  Identities=27%  Similarity=0.269  Sum_probs=78.3

Q ss_pred             CCCCCCCCccEEECCCCcCCC-ccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHh
Q 045099           90 SLFPPFQELQSLDLSENWFGG-VSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG  168 (217)
Q Consensus        90 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~  168 (217)
                      ..+..+++|++|++++|.+++ ..|.    .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+ ..
T Consensus       144 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~  218 (306)
T 2z66_A          144 GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FP  218 (306)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GG
T ss_pred             hhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hh
Confidence            345566666677776666665 3343    56667777777777777776666667777777777777777764333 25


Q ss_pred             hcCCCCCCEEEccCCcCcccccccccccCCC-CCCEEeccCCCCCCC
Q 045099          169 LANLRYLQVLDLSGNPITGRFIARLGLSSLR-NLKRLDLSNNYGFTT  214 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~-~L~~L~l~~N~l~~~  214 (217)
                      +..+++|++|++++|.+++..+.  .+..++ +|++|++++|.+++.
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSSS--SCCCCCTTCCEEECTTCCEECS
T ss_pred             ccCcccCCEeECCCCCCcccCHH--HHHhhhccCCEEEccCCCeecc
Confidence            66677777777777777776666  666663 777777777776543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=4.8e-17  Score=126.29  Aligned_cols=135  Identities=17%  Similarity=0.150  Sum_probs=78.0

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCc-CCCccCcchhhcccCCCCCCEEEccC-CCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENW-FGGVSESKAYNSSGNLKQLKILNLGN-NRL  136 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~l~~L~~L~L~~-n~l  136 (217)
                      ..++.++++++.+.             .+....+..+++|++|++++|. ++...+.    .|..+++|++|++++ |.+
T Consensus        31 ~~l~~L~l~~n~l~-------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l   93 (239)
T 2xwt_C           31 PSTQTLKLIETHLR-------------TIPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNL   93 (239)
T ss_dssp             TTCCEEEEESCCCS-------------EECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTC
T ss_pred             CcccEEEEeCCcce-------------EECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCe
Confidence            46778888887776             2334445566666666666665 5555444    455666666666665 666


Q ss_pred             CccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC---EEEccCC-cCcccccccccccCCCCCC-EEeccCCCC
Q 045099          137 NDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ---VLDLSGN-PITGRFIARLGLSSLRNLK-RLDLSNNYG  211 (217)
Q Consensus       137 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~l~~l~~L~-~L~l~~N~l  211 (217)
                      +...+..+..+++|++|++++|++++ +|.  +..+++|+   +|++++| .+++..+.  .+..+++|+ +|++++|++
T Consensus        94 ~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~--~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C           94 TYIDPDALKELPLLKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVN--AFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             CEECTTSEECCTTCCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTT--TTTTTBSSEEEEECCSCCC
T ss_pred             eEcCHHHhCCCCCCCEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcc--cccchhcceeEEEcCCCCC
Confidence            64444455566666666666666653 443  44555555   5555555 55543333  455555555 555555555


Q ss_pred             CCCC
Q 045099          212 FTTP  215 (217)
Q Consensus       212 ~~~p  215 (217)
                      +.+|
T Consensus       169 ~~i~  172 (239)
T 2xwt_C          169 TSVQ  172 (239)
T ss_dssp             CEEC
T ss_pred             cccC
Confidence            5444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=4.9e-17  Score=132.24  Aligned_cols=114  Identities=22%  Similarity=0.168  Sum_probs=90.2

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      .+++|++|++++|.++ .+|.    .+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|. .+..++
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~----~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~  253 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPA----SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRA  253 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCG----GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCC
T ss_pred             cCCCCCEEECcCCCcC-cchH----hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH-HhcCCC
Confidence            3778888888888887 4454    67788888888888888885 555678888888888888888877776 678888


Q ss_pred             CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +|++|++++|.+.+.+|.  .+..+++|++|++++|++.+..|
T Consensus       254 ~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             CCCEEECTTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCEEECCCCCchhhcch--hhhcCCCCCEEeCCCCCchhhcc
Confidence            888888888888888887  78888888888888887766544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.69  E-value=1.6e-16  Score=138.66  Aligned_cols=136  Identities=21%  Similarity=0.129  Sum_probs=71.5

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..++.++++++.+.+             +.+..|..+++|++|++++|.+++..|.    .|..+++|++|++++|.+++
T Consensus        33 ~~l~~L~Ls~n~i~~-------------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           33 NSTECLEFSFNVLPT-------------IQNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             TTCCEEECTTCCCSE-------------ECTTTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCSE
T ss_pred             CcCcEEEccCCccCc-------------CChhHhccCccceEEECCCCccceeChh----hccCccccCeeeCCCCcccc
Confidence            468889999988773             3334455555555555555555554444    45555555555555555555


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      ..|..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++....  .+..+++|++|++++|+++++
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLP--KGFPTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCC--TTCCCTTCCEEECCSSCCCEE
T ss_pred             cChhhhcccccccEeeccccCcccCCcc-hhccCCcccEEECCCCcccccCcc--cccCCcccCEEEcccCccccc
Confidence            4455555555555555555555532122 344555555555555555542111  222345555555555544443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=138.02  Aligned_cols=137  Identities=26%  Similarity=0.283  Sum_probs=98.3

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.             .+....|..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++
T Consensus        28 ~~l~~L~Ls~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~   90 (570)
T 2z63_A           28 FSTKNLDLSFNPLR-------------HLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQS   90 (570)
T ss_dssp             SSCCEEECCSCCCC-------------EECTTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCE
T ss_pred             ccccEEEccCCccC-------------ccChhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCc
Confidence            46788899888876             33445667777777778777777776665    66777777777777777776


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc-cccccccccCCCCCCEEeccCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG-RFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ..|..+..+++|++|++++|++++ ++...+..+++|++|++++|.+++ .+|.  .+.++++|++|++++|++++++
T Consensus        91 ~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~--~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           91 LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECTTSCCCEEC
T ss_pred             cCHhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChh--hhcccCCCCEEeCcCCccceec
Confidence            666677777777777777777764 333246777777777777777775 3566  6777777777777777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.69  E-value=1e-16  Score=141.71  Aligned_cols=137  Identities=28%  Similarity=0.284  Sum_probs=81.2

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.+.             ....|..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++
T Consensus        25 ~~l~~L~Ls~n~l~~~-------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~   87 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRL-------------PAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQ   87 (680)
T ss_dssp             TTCSEEECCSSCCCCC-------------CGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCC
T ss_pred             CCCcEEECCCCCCCCc-------------CHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCc
Confidence            5788889988887632             233455566666666666666665554    55556666666666666654


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ..+..+..+++|++|++++|++++ +++..+..+++|++|++++|.+++..+.  .+..+++|++|++++|++++++
T Consensus        88 l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           88 LSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLG--TQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCC--SSSCCTTCCEEECCSSCCCCBC
T ss_pred             cChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCch--hhcccccCCEEEccCCcccccC
Confidence            333345566666666666666653 3322455666666666666666655554  5555666666666666555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=2.2e-16  Score=126.75  Aligned_cols=139  Identities=23%  Similarity=0.263  Sum_probs=118.3

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..++.++++++.+.+..            ....+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++
T Consensus       101 ~~L~~L~l~~n~l~~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMS------------EFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             TTCCEEECTTSEEESST------------TTTTTTTCTTCCEEECTTSCCEECSTT----TTTTCTTCCEEECTTCEEGG
T ss_pred             CCCCEEECCCCcccccc------------cchhhhhccCCCEEECCCCcCCccchh----hcccCcCCCEEECCCCcccc
Confidence            46777888887766211            124578899999999999999988776    78899999999999999986


Q ss_pred             -cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          139 -SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       139 -~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                       ..|..+..+++|++|++++|++++..|. .+..+++|++|++++|.+++..+.  .+..+++|++|++++|++++.++
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTF--PYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSBCCSG--GGTTCTTCCEEECTTSCCCBCSS
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCccChh--hccCcccCCEeECCCCCCcccCH
Confidence             5788899999999999999999965454 788999999999999999987666  78899999999999999988764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.68  E-value=6.6e-16  Score=125.29  Aligned_cols=148  Identities=20%  Similarity=0.285  Sum_probs=91.0

Q ss_pred             CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099           45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK  115 (217)
Q Consensus        45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  115 (217)
                      ..|.|+.+.|...         ...++.++++++.+.+             +....+..+++|++|++++|.+++..|. 
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~-   94 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-------------IKDGDFKNLKNLHTLILINNKISKISPG-   94 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-------------BCTTTTTTCTTCCEEECCSSCCCCBCTT-
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-------------eChhhhccCCCCCEEECCCCcCCeeCHH-
Confidence            3578998888641         2356778888887763             2334566677777777777777766555 


Q ss_pred             hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc--cccccc
Q 045099          116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG--RFIARL  193 (217)
Q Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~--~~p~~~  193 (217)
                         .|..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++ ++...+..+++|++|++++|.++.  ..+.  
T Consensus        95 ---~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--  165 (330)
T 1xku_A           95 ---AFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG--  165 (330)
T ss_dssp             ---TTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTT--
T ss_pred             ---HhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChh--
Confidence               5666777777777777666 3443332  566666666666653 333355666666666666666643  3333  


Q ss_pred             cccCCCCCCEEeccCCCCCCCC
Q 045099          194 GLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       194 ~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      .+..+++|++|++++|.++.+|
T Consensus       166 ~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          166 AFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCC
T ss_pred             hccCCCCcCEEECCCCccccCC
Confidence            4555666666666666655554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.68  E-value=4.4e-16  Score=131.24  Aligned_cols=160  Identities=21%  Similarity=0.218  Sum_probs=86.2

Q ss_pred             ccceEEcCC---------CCcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcC
Q 045099           49 WERLKCNAT---------AGRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWF  108 (217)
Q Consensus        49 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  108 (217)
                      |..+.|...         ...++.++++++.+.+..+...           +.+.+..+....|..+++|++|++++|.+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            567788541         2456778888887763321110           11122223333444555555555555555


Q ss_pred             CCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc
Q 045099          109 GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR  188 (217)
Q Consensus       109 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  188 (217)
                      +...+.    .|..+++|++|++++|.++...+..+..+++|+.|++++|+..+.++...+..+++|++|++++|.++. 
T Consensus       125 ~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  199 (440)
T 3zyj_A          125 TTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-  199 (440)
T ss_dssp             SSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred             CeeCHh----HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence            554443    455555555555555555544444555555555555555333334444345566666666666666663 


Q ss_pred             ccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          189 FIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       189 ~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +|   .+..+++|+.|+|++|+++++++
T Consensus       200 ~~---~~~~l~~L~~L~Ls~N~l~~~~~  224 (440)
T 3zyj_A          200 IP---NLTPLIKLDELDLSGNHLSAIRP  224 (440)
T ss_dssp             CC---CCTTCSSCCEEECTTSCCCEECT
T ss_pred             cc---ccCCCcccCEEECCCCccCccCh
Confidence            33   35566677777777776666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=1.4e-16  Score=126.19  Aligned_cols=150  Identities=27%  Similarity=0.276  Sum_probs=96.6

Q ss_pred             CcEEEEecCCccccCCCCCC-----------CCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPN-----------NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK  127 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~  127 (217)
                      .+++.++++++.+.+..+..           .+.+.+..+....+..+++|++|++++|.+++..+.    .+..+++|+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~  127 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLK  127 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch----hcccCCCCC
Confidence            46777888877765322211           111223334445566777777777777777776654    566777777


Q ss_pred             EEEccCCCCCcc-chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC----EEEccCCcCcccccccccccCCCCCC
Q 045099          128 ILNLGNNRLNDS-ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ----VLDLSGNPITGRFIARLGLSSLRNLK  202 (217)
Q Consensus       128 ~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~----~L~L~~n~l~~~~p~~~~l~~l~~L~  202 (217)
                      +|++++|.+++. +|..+..+++|+.|++++|++++ ++...+..+.+|+    .|++++|.+++..+.   .....+|+
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~---~~~~~~L~  203 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLK  203 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCEEEECCSSCCCEECTT---SSCSCCEE
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccccceeeecCCCcccccCcc---ccCCCccc
Confidence            777777777653 46777777777777777777774 3322454444444    777777777764333   33445788


Q ss_pred             EEeccCCCCCCCCC
Q 045099          203 RLDLSNNYGFTTPS  216 (217)
Q Consensus       203 ~L~l~~N~l~~~p~  216 (217)
                      +|++++|+++++|+
T Consensus       204 ~L~L~~n~l~~~~~  217 (276)
T 2z62_A          204 ELALDTNQLKSVPD  217 (276)
T ss_dssp             EEECCSSCCSCCCT
T ss_pred             EEECCCCceeecCH
Confidence            99999998888875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.4e-16  Score=120.33  Aligned_cols=114  Identities=19%  Similarity=0.243  Sum_probs=91.1

Q ss_pred             CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcc-ccCccchHh
Q 045099           90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNS-IEGSRTKQG  168 (217)
Q Consensus        90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~  168 (217)
                      +.+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .++  .
T Consensus        82 ~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~  154 (197)
T 4ezg_A           82 NPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--P  154 (197)
T ss_dssp             GGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--G
T ss_pred             hhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--h
Confidence            3567788899999999998876666    78888999999999999988788888899999999999998 65 465  4


Q ss_pred             hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +..+++|++|++++|.+++ ++   .+..+++|++|++++|++.+.
T Consensus       155 l~~l~~L~~L~l~~n~i~~-~~---~l~~l~~L~~L~l~~N~i~~~  196 (197)
T 4ezg_A          155 LKTLPELKSLNIQFDGVHD-YR---GIEDFPKLNQLYAFSQTIGGK  196 (197)
T ss_dssp             GGGCSSCCEEECTTBCCCC-CT---TGGGCSSCCEEEECBC-----
T ss_pred             hcCCCCCCEEECCCCCCcC-hH---HhccCCCCCEEEeeCcccCCc
Confidence            7888999999999999886 33   567888999999999988653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.68  E-value=1.4e-16  Score=144.27  Aligned_cols=148  Identities=26%  Similarity=0.298  Sum_probs=102.1

Q ss_pred             ccccceEEcCCCCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCcc-CcchhhcccCCCC
Q 045099           47 CDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVS-ESKAYNSSGNLKQ  125 (217)
Q Consensus        47 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~l~~  125 (217)
                      |.|..|-+  ...+++.++++++.+.             .+.+..|..+++|++|++++|.+.+.+ +.    .|..+++
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~-------------~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~   74 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIR-------------TVTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPN   74 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCC-------------EECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCC-------------ccChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCC
Confidence            45666655  3568899999998877             334556677777777777777555544 33    5677777


Q ss_pred             CCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCcCccccc-ccccccCCCCCCE
Q 045099          126 LKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNPITGRFI-ARLGLSSLRNLKR  203 (217)
Q Consensus       126 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p-~~~~l~~l~~L~~  203 (217)
                      |++|+|++|.+++..|..+..+++|++|++++|.+++.++. ..+..+++|++|++++|.+++..+ .  .++++++|++
T Consensus        75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~L~~L~~  152 (844)
T 3j0a_A           75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP--SFGKLNSLKS  152 (844)
T ss_dssp             CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG--GGGTCSSCCE
T ss_pred             CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch--hHhhCCCCCE
Confidence            77777777777766677777777777777777777764443 126677777777777777776433 3  5677777777


Q ss_pred             EeccCCCCCCCC
Q 045099          204 LDLSNNYGFTTP  215 (217)
Q Consensus       204 L~l~~N~l~~~p  215 (217)
                      |++++|.++++.
T Consensus       153 L~Ls~N~i~~~~  164 (844)
T 3j0a_A          153 IDFSSNQIFLVC  164 (844)
T ss_dssp             EEEESSCCCCCC
T ss_pred             EECCCCcCCeeC
Confidence            777777776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.9e-16  Score=119.53  Aligned_cols=130  Identities=21%  Similarity=0.225  Sum_probs=111.0

Q ss_pred             cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc
Q 045099           60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS  139 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  139 (217)
                      +++.++++++.+.             .  .+.+..+++|++|++++|.++...      .+..+++|++|++++|.+++.
T Consensus        45 ~L~~L~l~~n~i~-------------~--l~~l~~l~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~l~~n~l~~~  103 (197)
T 4ezg_A           45 SLTYITLANINVT-------------D--LTGIEYAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDVTSD  103 (197)
T ss_dssp             TCCEEEEESSCCS-------------C--CTTGGGCTTCSEEEEESCCCSCCG------GGTTCTTCCEEEEECTTCBGG
T ss_pred             CccEEeccCCCcc-------------C--hHHHhcCCCCCEEEccCCCCCcch------hhhcCCCCCEEEeECCccCcc
Confidence            5778888888766             1  124678899999999999776542      678899999999999999987


Q ss_pred             chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCc-CcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          140 ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP-ITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       140 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      .+..+..+++|++|++++|.+++..+. .+..+++|++|++++|. ++. ++   .+..+++|++|++++|++++++
T Consensus       104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~-~~---~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          104 KIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD-IM---PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             GSCCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCC-CG---GGGGCSSCCEEECTTBCCCCCT
T ss_pred             cChhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccc-cH---hhcCCCCCCEEECCCCCCcChH
Confidence            888899999999999999999976665 78999999999999998 664 44   5788999999999999998875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=1.5e-16  Score=114.60  Aligned_cols=114  Identities=29%  Similarity=0.290  Sum_probs=100.4

Q ss_pred             CCCCccEEECCCCcCC-CccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099           94 PFQELQSLDLSENWFG-GVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL  172 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l  172 (217)
                      ..++|+.|++++|.++ +.+|.    .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|. .+..+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l   87 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKC   87 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHC
T ss_pred             CCccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhC
Confidence            3578999999999998 66776    778999999999999999975  7788999999999999999976665 67789


Q ss_pred             CCCCEEEccCCcCccc-ccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          173 RYLQVLDLSGNPITGR-FIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       173 ~~L~~L~L~~n~l~~~-~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ++|++|++++|.+++. .+.  .+..+++|++|++++|+++++|+
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIE--PLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHG--GGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCCEEECCCCcCCChHHHH--HHhhCCCCCEEeCcCCcccchHH
Confidence            9999999999999984 336  78999999999999999998875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=8e-16  Score=115.90  Aligned_cols=110  Identities=27%  Similarity=0.361  Sum_probs=95.1

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      ++|++|++++|.++.. |.    .|..+++|++|+|++|.+++..+..|..+++|+.|++++|++++ +++..+..+++|
T Consensus        31 ~~l~~L~L~~n~i~~i-p~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLV-PK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSSCCCSC-CG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTC
T ss_pred             CCCCEEECCCCcCchh-HH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCC
Confidence            5799999999999854 44    78899999999999999998777889999999999999999986 444478899999


Q ss_pred             CEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099          176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       176 ~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                      ++|+|++|.++...+.  .+..+++|+.|++++|.+..
T Consensus       105 ~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          105 RLLSLHGNDISVVPEG--AFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CEEECCSSCCCBCCTT--TTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCCCCeeChh--hhhcCccccEEEeCCCCeec
Confidence            9999999999976555  68889999999999998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=1.4e-16  Score=139.08  Aligned_cols=118  Identities=25%  Similarity=0.173  Sum_probs=63.2

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc-cchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND-SILSYLNTLTSLTTLILCDNSIEGSRTKQGL  169 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~  169 (217)
                      .+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|. .+
T Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~  493 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTNTKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG-VF  493 (606)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TT
T ss_pred             hhhccccCCEEECcCCCCCccchh----hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-hh
Confidence            344555555566655555555444    45555555555555555554 2444455555555555555555543332 45


Q ss_pred             cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ..+++|++|++++|++++..|.  .+..+++|+.|++++|+++.+|
T Consensus       494 ~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~p  537 (606)
T 3vq2_A          494 DTLHRLQLLNMSHNNLLFLDSS--HYNQLYSLSTLDCSFNRIETSK  537 (606)
T ss_dssp             TTCTTCCEEECCSSCCSCEEGG--GTTTCTTCCEEECTTSCCCCEE
T ss_pred             cccccCCEEECCCCcCCCcCHH--HccCCCcCCEEECCCCcCcccC
Confidence            5555555555555555554454  5555555555555555555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=3.3e-16  Score=117.83  Aligned_cols=128  Identities=25%  Similarity=0.357  Sum_probs=106.4

Q ss_pred             CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecC-CCCCCCCCccEEECCCCcCCCccCc
Q 045099           45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDL-SLFPPFQELQSLDLSENWFGGVSES  114 (217)
Q Consensus        45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~  114 (217)
                      -.|.|..+.|...         ...++.++++++.+.+             +.. ..+..+++|++|++++|.+++..+.
T Consensus         6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~-------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   72 (192)
T 1w8a_A            6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR-------------ISSDGLFGRLPHLVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS-------------BCCSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred             CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCc-------------cCCccccccCCCCCEEECCCCCCCCcCHh
Confidence            3477888888542         2367778888877662             222 2478899999999999999999887


Q ss_pred             chhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc
Q 045099          115 KAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI  190 (217)
Q Consensus       115 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  190 (217)
                          .|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|. .+..+++|++|++++|.+++..+
T Consensus        73 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           73 ----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ----HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccCcCc
Confidence                889999999999999999988888899999999999999999976665 78999999999999999986443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.66  E-value=8.8e-16  Score=124.71  Aligned_cols=146  Identities=25%  Similarity=0.328  Sum_probs=104.3

Q ss_pred             CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcch
Q 045099           46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKA  116 (217)
Q Consensus        46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  116 (217)
                      .|.|+.+.|...         ...++.++++++.+.             .+.+..+..+++|++|++++|.+++..+.  
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--   96 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-------------ELRKDDFKGLQHLYALVLVNNKISKIHEK--   96 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-------------EECTTTTTTCTTCCEEECCSSCCCEECGG--
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC-------------ccCHhHhhCCCCCcEEECCCCccCccCHh--
Confidence            378888888642         235677788777765             34455678888888888888888887666  


Q ss_pred             hhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc--ccccccc
Q 045099          117 YNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG--RFIARLG  194 (217)
Q Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~  194 (217)
                        .|..+++|++|++++|.++ .+|..+.  ++|++|++++|++++ ++...+..+++|++|++++|.++.  ..+.  .
T Consensus        97 --~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~  168 (332)
T 2ft3_A           97 --AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPG--A  168 (332)
T ss_dssp             --GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTT--S
T ss_pred             --HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcc--c
Confidence              7788888888888888887 4555443  788888888888874 444467888888888888888763  3444  4


Q ss_pred             ccCCCCCCEEeccCCCCCCCC
Q 045099          195 LSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       195 l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      +..+ +|++|++++|+++++|
T Consensus       169 ~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          169 FDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             SCSC-CCSCCBCCSSBCSSCC
T ss_pred             ccCC-ccCEEECcCCCCCccC
Confidence            5555 5666666666665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.66  E-value=4.3e-16  Score=132.40  Aligned_cols=148  Identities=25%  Similarity=0.217  Sum_probs=122.1

Q ss_pred             CcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK  127 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~  127 (217)
                      .+++.++++++.+.+..+...           +.+.+..++...|..+++|++|++++|.+++..+.    .|..+++|+
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~  131 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLK  131 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCC
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh----HccccccCC
Confidence            467788888887765433221           11233344455678899999999999999998877    889999999


Q ss_pred             EEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEecc
Q 045099          128 ILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS  207 (217)
Q Consensus       128 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~  207 (217)
                      +|++++|.+++..+..+..+++|+.|++++|++++ ++...+..+++|+.|++++|.+++..+.  .+..+++|+.|+++
T Consensus       132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~  208 (477)
T 2id5_A          132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEIS  208 (477)
T ss_dssp             EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTT--CSCSCTTCCEEEEE
T ss_pred             EEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChh--hcccCcccceeeCC
Confidence            99999999998888889999999999999999985 6655799999999999999999987776  88999999999999


Q ss_pred             CCCCCC
Q 045099          208 NNYGFT  213 (217)
Q Consensus       208 ~N~l~~  213 (217)
                      +|.+.+
T Consensus       209 ~~~~~~  214 (477)
T 2id5_A          209 HWPYLD  214 (477)
T ss_dssp             CCTTCC
T ss_pred             CCcccc
Confidence            987543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.66  E-value=8.4e-16  Score=123.96  Aligned_cols=116  Identities=23%  Similarity=0.156  Sum_probs=66.5

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc--chHHh--hcCCCCCEEEccCccccC--ccchHhh
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS--ILSYL--NTLTSLTTLILCDNSIEG--SRTKQGL  169 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p~~~~  169 (217)
                      ++|++|++++|.+++..+.    .|..+++|++|++++|++.+.  .|..+  ..+++|++|++++|++++  .++...+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  224 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA  224 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTT----TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred             CCCcEEEeeCCCCccchHH----HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence            5566666666666665554    566666666666666666544  23333  556666666666666652  1222233


Q ss_pred             cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..+++|++|++++|.+++.+|.. .+..+++|++|++++|+++.+|.
T Consensus       225 ~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~~ip~  270 (312)
T 1wwl_A          225 AARVQLQGLDLSHNSLRDAAGAP-SCDWPSQLNSLNLSFTGLKQVPK  270 (312)
T ss_dssp             HTTCCCSEEECTTSCCCSSCCCS-CCCCCTTCCEEECTTSCCSSCCS
T ss_pred             hcCCCCCEEECCCCcCCcccchh-hhhhcCCCCEEECCCCccChhhh
Confidence            45566666666666666644310 34445666666666666665553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=7.8e-16  Score=129.73  Aligned_cols=149  Identities=20%  Similarity=0.174  Sum_probs=117.0

Q ss_pred             CcEEEEecCCccccCCCCCC-----------CCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPN-----------NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK  127 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~  127 (217)
                      .+++.++++++.+.+..+..           .+.+.+..+....|..+++|++|++++|.++...+.    .|..+++|+
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~  163 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY----AFNRIPSLR  163 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT----TTTTCTTCC
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHH----HhhhCcccC
Confidence            46777888887765432111           112334444555688899999999999999987776    788999999


Q ss_pred             EEEccCC-CCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099          128 ILNLGNN-RLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL  206 (217)
Q Consensus       128 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l  206 (217)
                      +|++++| .+....+..+..+++|++|++++|+++ .+|.  +..+++|++|++++|.+++..|.  .+..+++|+.|++
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L  238 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPG--SFQGLMHLQKLWM  238 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTT--TTTTCTTCCEEEC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChh--hhccCccCCEEEC
Confidence            9999985 455444457888999999999999998 5664  78899999999999999987787  8899999999999


Q ss_pred             cCCCCCCCCC
Q 045099          207 SNNYGFTTPS  216 (217)
Q Consensus       207 ~~N~l~~~p~  216 (217)
                      ++|+++++++
T Consensus       239 ~~n~l~~~~~  248 (440)
T 3zyj_A          239 IQSQIQVIER  248 (440)
T ss_dssp             TTCCCCEECT
T ss_pred             CCCceeEECh
Confidence            9999988764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=5.2e-16  Score=114.02  Aligned_cols=114  Identities=29%  Similarity=0.245  Sum_probs=99.8

Q ss_pred             CCCCccEEECCCCcCC-CccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099           94 PFQELQSLDLSENWFG-GVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL  172 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l  172 (217)
                      ..++|++|++++|.++ +.+|.    .+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|. .+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l   94 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL   94 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred             CcccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence            3578999999999998 66665    678899999999999999965  7788899999999999999976665 67779


Q ss_pred             CCCCEEEccCCcCcccc-cccccccCCCCCCEEeccCCCCCCCCC
Q 045099          173 RYLQVLDLSGNPITGRF-IARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       173 ~~L~~L~L~~n~l~~~~-p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ++|++|++++|.+++.. +.  .+..+++|++|++++|+++++|+
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~--~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLE--PLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGG--GGSSCSCCCEEECCSSGGGTSTT
T ss_pred             CCCCEEeccCCccCcchhHH--HHhcCCCCCEEEeeCCcCcchHH
Confidence            99999999999999842 25  78899999999999999998875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.65  E-value=6.5e-16  Score=134.81  Aligned_cols=113  Identities=23%  Similarity=0.220  Sum_probs=102.4

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      +.+++|+|++|.|++..+.    .|..+++|++|+|++|.|++..+..|..+++|++|+|++|++++ +|...|..+++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence            4689999999999998877    89999999999999999998777789999999999999999985 665579999999


Q ss_pred             CEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       176 ~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ++|++++|++++..+.  .++.+++|++|++++|++++++
T Consensus       127 ~~L~Ls~N~l~~l~~~--~~~~L~~L~~L~Ls~N~l~~~~  164 (635)
T 4g8a_A          127 QKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFK  164 (635)
T ss_dssp             CEEECTTSCCCCSTTC--CCTTCTTCCEEECCSSCCCCCC
T ss_pred             CEEECCCCcCCCCChh--hhhcCcccCeeccccCccccCC
Confidence            9999999999986666  7899999999999999998764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=1e-15  Score=129.39  Aligned_cols=149  Identities=20%  Similarity=0.152  Sum_probs=117.3

Q ss_pred             CcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK  127 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~  127 (217)
                      .+++.++++++.+.+..+...           +.+.+..+....+..+++|++|++++|.++...+.    .|..+++|+
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~  174 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLM  174 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT----TTTTCTTCC
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHh----HHhcCCccc
Confidence            467888888888765432221           11334445555678899999999999999887766    788999999


Q ss_pred             EEEccCC-CCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099          128 ILNLGNN-RLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL  206 (217)
Q Consensus       128 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l  206 (217)
                      +|++++| .+....+..+..+++|++|++++|++++ +|.  +..+++|++|++++|.+++..|.  .+..+++|+.|++
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L  249 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN--LTPLVGLEELEMSGNHFPEIRPG--SFHGLSSLKKLWV  249 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC--CTTCTTCCEEECTTSCCSEECGG--GGTTCTTCCEEEC
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc--ccccccccEEECcCCcCcccCcc--cccCccCCCEEEe
Confidence            9999984 5554334568889999999999999984 553  78889999999999999987787  8899999999999


Q ss_pred             cCCCCCCCCC
Q 045099          207 SNNYGFTTPS  216 (217)
Q Consensus       207 ~~N~l~~~p~  216 (217)
                      ++|+++++++
T Consensus       250 ~~n~l~~~~~  259 (452)
T 3zyi_A          250 MNSQVSLIER  259 (452)
T ss_dssp             TTSCCCEECT
T ss_pred             CCCcCceECH
Confidence            9999987754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=1.5e-15  Score=124.94  Aligned_cols=114  Identities=25%  Similarity=0.197  Sum_probs=103.0

Q ss_pred             CCccEEECCCCcCCCccCcchhhccc-CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSG-NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY  174 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~  174 (217)
                      ..++.|++++|.+++..+.    .+. .+++|++|+|++|.|++..+..|..+++|++|+|++|++++ ++...+..+++
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTT
T ss_pred             CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcC
Confidence            4589999999999998876    676 89999999999999998777889999999999999999985 55547899999


Q ss_pred             CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      |++|+|++|.+++..+.  .+..+++|++|+|++|+++++|+
T Consensus       114 L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRN--AFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             CCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCSCCG
T ss_pred             CCEEECCCCcccEECHH--HhCCcccCCEEECCCCcCCeeCH
Confidence            99999999999987777  89999999999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=5.7e-16  Score=124.96  Aligned_cols=149  Identities=22%  Similarity=0.204  Sum_probs=108.6

Q ss_pred             CcEEEEecCCccccCCCCC-----------C-----CCCCCceeecCCCCCCCCCccEEECCCCcCCCcc--Ccchhhcc
Q 045099           59 GRVTELSLNRLKHYKSSNP-----------N-----NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVS--ESKAYNSS  120 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~-----------~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~  120 (217)
                      ..++.++++++.+.+. +.           .     .+.+.+..+.+..+..+++|++|++++|.+.+..  +..+  .+
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~  197 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL--CP  197 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS--CT
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH--Hh
Confidence            3566777777776653 11           1     0112333445567889999999999999987752  2210  23


Q ss_pred             cCCCCCCEEEccCCCCCc--cch-HHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccC
Q 045099          121 GNLKQLKILNLGNNRLND--SIL-SYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS  197 (217)
Q Consensus       121 ~~l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~  197 (217)
                      ..+++|++|++++|.+++  .++ ..+..+++|++|++++|++++.+|...+..+++|++|++++|.++ .+|.  .+. 
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~--~~~-  273 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK--GLP-  273 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS--SCC-
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh--hcc-
Confidence            789999999999999983  233 344678999999999999997664335667889999999999998 5776  554 


Q ss_pred             CCCCCEEeccCCCCCCCC
Q 045099          198 LRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       198 l~~L~~L~l~~N~l~~~p  215 (217)
                       ++|++|++++|+++++|
T Consensus       274 -~~L~~L~Ls~N~l~~~p  290 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRNP  290 (312)
T ss_dssp             -SEEEEEECCSSCCCSCC
T ss_pred             -CCceEEECCCCCCCCCh
Confidence             78999999999998885

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.62  E-value=2.4e-15  Score=128.96  Aligned_cols=110  Identities=27%  Similarity=0.294  Sum_probs=47.2

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      .+++|++|++++|.+++.+|..   .+..+++|++|++++|.+++..|..+.  ++|+.|++++|+++ .+|. .+..++
T Consensus       372 ~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~-~~~~l~  444 (520)
T 2z7x_B          372 QMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK-QVVKLE  444 (520)
T ss_dssp             TCTTCCEEECCSSCCBCCGGGC---SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG-GGGGCT
T ss_pred             hCCCCCEEECCCCcCCcccccc---hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch-hhhcCC
Confidence            3444444444444444422210   233344444444444444433333221  34445555555444 3443 233445


Q ss_pred             CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      +|++|++++|+++. +|.. .+..+++|++|++++|+++
T Consensus       445 ~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          445 ALQELNVASNQLKS-VPDG-IFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             TCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECCSSCBC
T ss_pred             CCCEEECCCCcCCc-cCHH-HhccCCcccEEECcCCCCc
Confidence            55555555555543 3320 2444455555555555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.62  E-value=3.8e-15  Score=127.73  Aligned_cols=116  Identities=25%  Similarity=0.326  Sum_probs=63.0

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc--cchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND--SILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      .+++|++|++++|.+++..+.    .+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|...+..
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~  397 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW  397 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTT----TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred             hCCcccEEEeECCccChhhhh----hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence            444555555555555554443    44445555555555555543  233444445555555555555543333322333


Q ss_pred             C----------------------CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          172 L----------------------RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       172 l----------------------~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +                      ++|++|++++|+++ .+|.  .+..+++|++|++++|+++.+|+
T Consensus       398 l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~--~~~~l~~L~~L~L~~N~l~~l~~  461 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPK--QVVKLEALQELNVASNQLKSVPD  461 (520)
T ss_dssp             CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCG--GGGGCTTCCEEECCSSCCCCCCT
T ss_pred             CccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccch--hhhcCCCCCEEECCCCcCCccCH
Confidence            3                      45666666666666 3555  55677788888888888877765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.62  E-value=1e-15  Score=123.36  Aligned_cols=115  Identities=19%  Similarity=0.142  Sum_probs=63.3

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc--chH--HhhcCCCCCEEEccCccccCccch---
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS--ILS--YLNTLTSLTTLILCDNSIEGSRTK---  166 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~--~~~~l~~L~~L~l~~n~l~~~~p~---  166 (217)
                      .+++|++|++++|.+++..+.    .+..+++|++|++++|++.+.  ++.  .+..+++|++|++++|+++. ++.   
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~  217 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCE----QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA  217 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTT----SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHH----HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH
Confidence            356677777777777666555    556666666666666665532  111  12445566666666666642 221   


Q ss_pred             HhhcCCCCCCEEEccCCcCcccccccccccCC---CCCCEEeccCCCCCCCC
Q 045099          167 QGLANLRYLQVLDLSGNPITGRFIARLGLSSL---RNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       167 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l---~~L~~L~l~~N~l~~~p  215 (217)
                      ..+..+++|++|++++|.+++..|.  .+..+   ++|++|++++|+++.+|
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNP--SAPRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCS--CCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred             HHHhcCCCCCEEECCCCCCCccchh--hHHhccCcCcCCEEECCCCCCCchh
Confidence            0134455666666666666654444  34443   45566666666555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.62  E-value=6.2e-15  Score=119.56  Aligned_cols=117  Identities=23%  Similarity=0.265  Sum_probs=89.1

Q ss_pred             CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHh
Q 045099           89 LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG  168 (217)
Q Consensus        89 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~  168 (217)
                      ...+..+++|++|++++|.++..+.     .+  .++|++|++++|.+++..|..+..+++|+.|++++|.+++..+ ..
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~l~~-----~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~  235 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNITTIPQ-----GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GS  235 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSCCS-----SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TT
T ss_pred             hhhccCCCCcCEEECCCCccccCCc-----cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hh
Confidence            3445667788888888888776433     22  2678888888888887777788888888888888888875444 36


Q ss_pred             hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +..+++|++|++++|.++ .+|.  .+..+++|++|++++|+++++++
T Consensus       236 ~~~l~~L~~L~L~~N~l~-~lp~--~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLV-KVPG--GLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCT--TTTTCSSCCEEECCSSCCCCCCT
T ss_pred             ccCCCCCCEEECCCCcCc-cCCh--hhccCCCcCEEECCCCcCCccCh
Confidence            778888888888888888 4676  77888888888888888888765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.61  E-value=6.4e-15  Score=128.50  Aligned_cols=147  Identities=25%  Similarity=0.223  Sum_probs=86.1

Q ss_pred             cEEEEecCCccccCCCCCCCC-----------CCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCE
Q 045099           60 RVTELSLNRLKHYKSSNPNNS-----------SDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKI  128 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~  128 (217)
                      .++.++++++.+.+..+....           .+.+..+ +..+..+++|++|++++|.+++..+.    .+..+++|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~  329 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQI----SASNFPSLTH  329 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGG----CGGGCTTCSE
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCcCchh----hhhccCcCCE
Confidence            678888888877643221110           0111111 12345556666666666666655554    5556666666


Q ss_pred             EEccCCCCCccchH-HhhcCCCCCEEEccCccccCcc--chHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEe
Q 045099          129 LNLGNNRLNDSILS-YLNTLTSLTTLILCDNSIEGSR--TKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD  205 (217)
Q Consensus       129 L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~  205 (217)
                      |++++|.+.+.+|. .+..+++|++|++++|.+++..  +. .+..+++|++|++++|.+++..|.  .+..+++|++|+
T Consensus       330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~  406 (606)
T 3t6q_A          330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTE--AFKECPQLELLD  406 (606)
T ss_dssp             EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCEEECTT--TTTTCTTCSEEE
T ss_pred             EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCCcCCHH--HhcCCccCCeEE
Confidence            66666666544443 3556666666666666665432  32 466666777777777776665565  666677777777


Q ss_pred             ccCCCCCCC
Q 045099          206 LSNNYGFTT  214 (217)
Q Consensus       206 l~~N~l~~~  214 (217)
                      +++|++++.
T Consensus       407 l~~n~l~~~  415 (606)
T 3t6q_A          407 LAFTRLKVK  415 (606)
T ss_dssp             CTTCCEECC
T ss_pred             CCCCcCCCc
Confidence            777776554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=2.1e-15  Score=130.41  Aligned_cols=138  Identities=23%  Similarity=0.226  Sum_probs=115.8

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.             .+....|..+++|++|++++|.+++..+.    .|..+++|++|++++|.+++
T Consensus        52 ~~L~~L~Ls~n~i~-------------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~  114 (570)
T 2z63_A           52 PELQVLDLSRCEIQ-------------TIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLAS  114 (570)
T ss_dssp             SSCCEEECTTCCCC-------------EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCC
T ss_pred             CCceEEECCCCcCC-------------ccCcccccCchhCCEEeCcCCcCCccCHh----hhcCcccccccccccccccc
Confidence            46788899888776             34566788899999999999999988776    78899999999999999986


Q ss_pred             cchHHhhcCCCCCEEEccCccccC-ccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCC----CEEeccCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEG-SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNL----KRLDLSNNYGFT  213 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L----~~L~l~~N~l~~  213 (217)
                      ..+..++.+++|++|++++|.+++ .+|. .+.++++|++|++++|.+++..+.  .+..+++|    +.+++++|.+++
T Consensus       115 l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~~~~~L~l~~n~l~~  191 (570)
T 2z63_A          115 LENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNF  191 (570)
T ss_dssp             STTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEECGG--GGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             CCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceecHH--HccchhccchhhhhcccCCCCcee
Confidence            555468899999999999999986 3565 788999999999999999987666  77777777    899999999887


Q ss_pred             CCC
Q 045099          214 TPS  216 (217)
Q Consensus       214 ~p~  216 (217)
                      +++
T Consensus       192 ~~~  194 (570)
T 2z63_A          192 IQP  194 (570)
T ss_dssp             ECT
T ss_pred             cCH
Confidence            765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=4.6e-15  Score=109.45  Aligned_cols=88  Identities=30%  Similarity=0.311  Sum_probs=59.6

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      +.|++|++++|.+++..+.    .|..+++|++|+|++|+|++..+..+..+++|++|++++|++++ ++...+..+++|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence            5677777777777776665    66677777777777777775555556667777777777777764 443356667777


Q ss_pred             CEEEccCCcCccc
Q 045099          176 QVLDLSGNPITGR  188 (217)
Q Consensus       176 ~~L~L~~n~l~~~  188 (217)
                      ++|+|++|+++..
T Consensus       105 ~~L~L~~N~~~c~  117 (170)
T 3g39_A          105 THIWLLNNPWDCA  117 (170)
T ss_dssp             CEEECCSSCBCTT
T ss_pred             CEEEeCCCCCCCC
Confidence            7777777776653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.61  E-value=5.1e-16  Score=127.14  Aligned_cols=135  Identities=23%  Similarity=0.261  Sum_probs=86.3

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.             .+....+..+++|++|++++|.+++..+.    .+..+++|++|++++|.++.
T Consensus        76 ~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~  138 (353)
T 2z80_A           76 VNLQALVLTSNGIN-------------TIEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKT  138 (353)
T ss_dssp             TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSS
T ss_pred             CCCCEEECCCCccC-------------ccCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcc
Confidence            46778888887766             23344566777777777777777765543    46667777777777777764


Q ss_pred             cch-HHhhcCCCCCEEEccCcc-ccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099          139 SIL-SYLNTLTSLTTLILCDNS-IEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       139 ~~p-~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                      ..+ ..+..+++|++|++++|+ ++ .+++..+..+++|++|++++|.+++..|.  .+..+++|++|++++|++..
T Consensus       139 l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          139 LGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPK--SLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             SCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSEEEEEEEECSCSTT
T ss_pred             cCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHH--HHhccccCCeecCCCCcccc
Confidence            322 256667777777777774 44 34333566667777777777777665555  55666555555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=1.9e-15  Score=129.17  Aligned_cols=113  Identities=20%  Similarity=0.155  Sum_probs=82.1

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhh-cCCCCCEEEccCccccCccchHhhcCC
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN-TLTSLTTLILCDNSIEGSRTKQGLANL  172 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~~l  172 (217)
                      .+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++ ++.  ...+
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~--~~~l  190 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVVF  190 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCCC
T ss_pred             ccCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccc--cccC
Confidence            356788888888888877666    667778888888888888877777665 67778888888887774 332  3457


Q ss_pred             CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       173 ~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ++|++|+|++|.+++ +|.  .+..+++|+.|++++|.++++|+
T Consensus       191 ~~L~~L~Ls~N~l~~-~~~--~~~~l~~L~~L~Ls~N~l~~lp~  231 (487)
T 3oja_A          191 AKLKTLDLSSNKLAF-MGP--EFQSAAGVTWISLRNNKLVLIEK  231 (487)
T ss_dssp             TTCCEEECCSSCCCE-ECG--GGGGGTTCSEEECTTSCCCEECT
T ss_pred             CCCCEEECCCCCCCC-CCH--hHcCCCCccEEEecCCcCcccch
Confidence            777777777777776 444  56677777777777777777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.61  E-value=6.2e-15  Score=129.76  Aligned_cols=151  Identities=18%  Similarity=0.175  Sum_probs=102.6

Q ss_pred             cEEEEecCCccccCCCCCCCC--------CCCceeec----------CCCCCCCCCccEEECCCCcCCCccCcchhh---
Q 045099           60 RVTELSLNRLKHYKSSNPNNS--------SDGVIILD----------LSLFPPFQELQSLDLSENWFGGVSESKAYN---  118 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~--------~~~~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---  118 (217)
                      +++.++++++.+.+..+....        ...+..++          ...+..+++|++|++++|.++..++. .+.   
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~~~  481 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN-SLKDEN  481 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS-SSEETT
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH-Hhcccc
Confidence            567777777777665443222        11222222          12233467788888888888743332 110   


Q ss_pred             -cccCCCCCCEEEccCCCCCccchHHhh--cCCCCCEEEccCccccCccchHhhcCCCCCCEEEc------cCCcCcccc
Q 045099          119 -SSGNLKQLKILNLGNNRLNDSILSYLN--TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDL------SGNPITGRF  189 (217)
Q Consensus       119 -~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L------~~n~l~~~~  189 (217)
                       .+.++++|++|++++|.++ .+|..+.  .+++|+.|++++|++++ +|. .+..+++|++|++      ++|.+.+.+
T Consensus       482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~  558 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT-QPLNSSTLKGFGIRNQRDAQGNRTLREW  558 (636)
T ss_dssp             EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC-GGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred             ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh-hhhcCCCCCEEECCCCcccccCcccccC
Confidence             0112338888888888888 5777776  88888888888888886 776 6778888888888      457777778


Q ss_pred             cccccccCCCCCCEEeccCCCCCCCCC
Q 045099          190 IARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       190 p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      |.  .+..+++|++|++++|++..+|.
T Consensus       559 p~--~l~~l~~L~~L~Ls~N~l~~ip~  583 (636)
T 4eco_A          559 PE--GITLCPSLTQLQIGSNDIRKVNE  583 (636)
T ss_dssp             CT--TGGGCSSCCEEECCSSCCCBCCS
T ss_pred             hH--HHhcCCCCCEEECCCCcCCccCH
Confidence            87  78888888888888888877765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=5.8e-15  Score=109.36  Aligned_cols=87  Identities=26%  Similarity=0.303  Sum_probs=62.1

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      ++|++|++++|.+++.++.    .|..+++|++|+|++|+|++..+..+..+++|++|++++|++++ +|...+..+++|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence            6677777777777777665    67777777777777777776444455677777777777777774 444356777777


Q ss_pred             CEEEccCCcCcc
Q 045099          176 QVLDLSGNPITG  187 (217)
Q Consensus       176 ~~L~L~~n~l~~  187 (217)
                      ++|++++|++..
T Consensus       108 ~~L~L~~N~~~c  119 (174)
T 2r9u_A          108 THIYLYNNPWDC  119 (174)
T ss_dssp             SEEECCSSCBCT
T ss_pred             CEEEeCCCCccc
Confidence            777777777765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.60  E-value=8.3e-15  Score=121.43  Aligned_cols=120  Identities=24%  Similarity=0.195  Sum_probs=93.6

Q ss_pred             CceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccC
Q 045099           83 GVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEG  162 (217)
Q Consensus        83 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  162 (217)
                      .+..+....+..+++|++|++++|.+++..+.    .|..+++|++|++++|.++...+..+..+++|++|++++|++++
T Consensus        80 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             cccccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence            44455566788999999999999999998876    78899999999999999995444456889999999999999986


Q ss_pred             ccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          163 SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       163 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      ..+ ..+..+++|++|++++|.+++..     +..+++|++|++++|.++
T Consensus       156 ~~~-~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          156 IED-DTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCT-TTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSSCCS
T ss_pred             cCh-hhccCCCCCCEEECCCCcCCccc-----cccccccceeeccccccc
Confidence            444 37889999999999999998632     233455555554444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=7.1e-15  Score=128.43  Aligned_cols=122  Identities=25%  Similarity=0.187  Sum_probs=96.8

Q ss_pred             CCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcccc
Q 045099           82 DGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIE  161 (217)
Q Consensus        82 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  161 (217)
                      +.+..+.+..|..+++|++|++++|.+++.++.    .|..+++|++|+|++|.+++..+..+..+++|++|++++|.++
T Consensus        85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~  160 (597)
T 3oja_B           85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE  160 (597)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence            344556666789999999999999999998886    7889999999999999999655556789999999999999998


Q ss_pred             CccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099          162 GSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       162 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                      +..|. .+..+++|++|++++|.+++..     +..+++|+.|++++|.+++
T Consensus       161 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          161 RIEDD-TFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             BCCTT-TTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCSE
T ss_pred             CCChh-hhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCcccc
Confidence            75554 7899999999999999998742     2334555555555554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=1.8e-15  Score=121.90  Aligned_cols=120  Identities=24%  Similarity=0.225  Sum_probs=89.6

Q ss_pred             eecCCCCCCCCCccEEECCCCcCCCc---cCcchhhcccCCCCCCEEEccCCCCCccchH----HhhcCCCCCEEEccCc
Q 045099           86 ILDLSLFPPFQELQSLDLSENWFGGV---SESKAYNSSGNLKQLKILNLGNNRLNDSILS----YLNTLTSLTTLILCDN  158 (217)
Q Consensus        86 ~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~l~~n  158 (217)
                      .+....+..+++|++|++++|.+.+.   .+.   ..+..+++|++|++++|.++. ++.    .+..+++|++|++++|
T Consensus       159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAA---LCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT---SCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTS
T ss_pred             hhhHHHhccCCCCCEEECCCCCCccchhhhHH---HhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCC
Confidence            34455678889999999999988763   111   034678889999999999873 232    2467889999999999


Q ss_pred             cccCccchHhhcCC---CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          159 SIEGSRTKQGLANL---RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       159 ~l~~~~p~~~~~~l---~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ++++.+|. .+..+   ++|++|++++|+++ .+|.  .+.  ++|++|++++|+++++|
T Consensus       235 ~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~-~lp~--~~~--~~L~~L~Ls~N~l~~~~  288 (310)
T 4glp_A          235 SLRATVNP-SAPRCMWSSALNSLNLSFAGLE-QVPK--GLP--AKLRVLDLSSNRLNRAP  288 (310)
T ss_dssp             CCCCCCCS-CCSSCCCCTTCCCEECCSSCCC-SCCS--CCC--SCCSCEECCSCCCCSCC
T ss_pred             CCCccchh-hHHhccCcCcCCEEECCCCCCC-chhh--hhc--CCCCEEECCCCcCCCCc
Confidence            99876564 45555   68999999999988 4676  443  78889999999888865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.60  E-value=1.4e-15  Score=117.88  Aligned_cols=124  Identities=18%  Similarity=0.151  Sum_probs=96.3

Q ss_pred             ceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC---EEEccCC-CCCccchHHhhcCCCCC-EEEccCc
Q 045099           84 VIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK---ILNLGNN-RLNDSILSYLNTLTSLT-TLILCDN  158 (217)
Q Consensus        84 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~l~~n  158 (217)
                      +..++...|..+++|++|++++|.+++ +|     .+..+++|+   +|++++| .+++..+..+..+++|+ .|++++|
T Consensus        93 l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp-----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C           93 LTYIDPDALKELPLLKFLGIFNTGLKM-FP-----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             CCEECTTSEECCTTCCEEEEEEECCCS-CC-----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred             eeEcCHHHhCCCCCCCEEeCCCCCCcc-cc-----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence            334445566778888888888888877 33     356677777   8888888 88866666788899999 9999999


Q ss_pred             cccCccchHhhcCCCCCCEEEccCCc-CcccccccccccCC-CCCCEEeccCCCCCCCCCC
Q 045099          159 SIEGSRTKQGLANLRYLQVLDLSGNP-ITGRFIARLGLSSL-RNLKRLDLSNNYGFTTPSQ  217 (217)
Q Consensus       159 ~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~l~~l-~~L~~L~l~~N~l~~~p~~  217 (217)
                      +++ .+|...+.. ++|+.|++++|+ +++..+.  .+..+ ++|+.|++++|+++++|++
T Consensus       167 ~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~--~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          167 GFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKD--AFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             CCC-EECTTTTTT-CEEEEEECTTCTTCCEECTT--TTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             CCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHH--HhhccccCCcEEECCCCccccCChh
Confidence            998 677644544 789999999995 8865555  77888 9999999999999998863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=4.4e-15  Score=109.98  Aligned_cols=128  Identities=26%  Similarity=0.250  Sum_probs=104.8

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCC-CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQ-ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN  137 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  137 (217)
                      ..++.++++++.+..             +  +.+..+. +|++|++++|.+++.  .    .+..+++|++|++++|.++
T Consensus        19 ~~L~~L~l~~n~l~~-------------i--~~~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-------------I--ENLGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             TSCEEEECTTSCCCS-------------C--CCGGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSCCC
T ss_pred             CCceEEEeeCCCCch-------------h--HHhhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCccc
Confidence            468899999998771             1  2233444 899999999999986  3    7889999999999999999


Q ss_pred             ccchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCcCccccccccc----ccCCCCCCEEeccCCCC
Q 045099          138 DSILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNPITGRFIARLG----LSSLRNLKRLDLSNNYG  211 (217)
Q Consensus       138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~----l~~l~~L~~L~l~~N~l  211 (217)
                      +..+..+..+++|++|++++|+++ .+|. ..+..+++|++|++++|.++. +|.  .    +..+++|+.|+++.|..
T Consensus        78 ~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~--~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           78 RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKH--YRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STT--HHHHHHHHCTTCSEETTEECCH
T ss_pred             ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHh--HHHHHHHHCCccceeCCCcCCH
Confidence            655455689999999999999997 4553 357889999999999999985 554  4    78899999999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=4.9e-15  Score=111.57  Aligned_cols=123  Identities=28%  Similarity=0.338  Sum_probs=102.4

Q ss_pred             CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcch
Q 045099           46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKA  116 (217)
Q Consensus        46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  116 (217)
                      .|.|..+.|...         ...++.++++++.+.             .++ ..+..+++|++|++++|.+++..+.  
T Consensus         9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-------------~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~--   72 (193)
T 2wfh_A            9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-------------LVP-KELSNYKHLTLIDLSNNRISTLSNQ--   72 (193)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-------------SCC-GGGGGCTTCCEEECCSSCCCCCCTT--
T ss_pred             EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-------------hhH-HHhhcccCCCEEECCCCcCCEeCHh--
Confidence            466777777531         235677777777765             222 4578899999999999999998876  


Q ss_pred             hhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc
Q 045099          117 YNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG  187 (217)
Q Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  187 (217)
                        .|..+++|++|+|++|.+++..+..|..+++|+.|++++|++++ ++...+..+++|++|++++|.+..
T Consensus        73 --~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           73 --SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             --TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             --HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeec
Confidence              78999999999999999998888889999999999999999994 665578899999999999999874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.60  E-value=4.1e-15  Score=120.78  Aligned_cols=149  Identities=20%  Similarity=0.243  Sum_probs=93.9

Q ss_pred             CcEEEEecCCccccCCCCCCCC---------CCCceeecCCCCCCCCCccEEECCCCcCCC--ccCcchhhcccC-----
Q 045099           59 GRVTELSLNRLKHYKSSNPNNS---------SDGVIILDLSLFPPFQELQSLDLSENWFGG--VSESKAYNSSGN-----  122 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~-----  122 (217)
                      ..++.++++++.+. .++....         .+.+..+....+..+++|++|++++|.++.  ..+.    .+..     
T Consensus       102 ~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~~l~L~~  176 (332)
T 2ft3_A          102 RKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG----AFDGLKLNY  176 (332)
T ss_dssp             TTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT----SSCSCCCSC
T ss_pred             CCCCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc----cccCCccCE
Confidence            35667777777665 2222111         112222233345666777777777776642  2221    1111     


Q ss_pred             ---------------CCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc
Q 045099          123 ---------------LKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG  187 (217)
Q Consensus       123 ---------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  187 (217)
                                     .++|++|++++|.+++..+..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.++ 
T Consensus       177 L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~-  254 (332)
T 2ft3_A          177 LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLS-  254 (332)
T ss_dssp             CBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCC-
T ss_pred             EECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCe-
Confidence                           1467777777777776666677777888888888888875433 36777788888888888887 


Q ss_pred             cccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          188 RFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       188 ~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      .+|.  .+..+++|++|++++|+++++++
T Consensus       255 ~lp~--~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          255 RVPA--GLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             BCCT--TGGGCTTCCEEECCSSCCCBCCT
T ss_pred             ecCh--hhhcCccCCEEECCCCCCCccCh
Confidence            4666  67778888888888888877764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.59  E-value=2.4e-15  Score=132.99  Aligned_cols=140  Identities=24%  Similarity=0.216  Sum_probs=98.1

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.+             +.+..+..+++|++|++++|.++..++.    .|..+++|++|++++|.+++
T Consensus        49 ~~L~~L~Ls~n~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~  111 (680)
T 1ziw_A           49 SQLTSLDVGFNTISK-------------LEPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQK  111 (680)
T ss_dssp             TTCSEEECCSSCCCC-------------CCTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCC
T ss_pred             CcCcEEECCCCccCc-------------cCHHHHhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCc
Confidence            467888888887763             2334456677788888888877776654    57777788888888887776


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..|..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+.......+++|++|++++|+++++++
T Consensus       112 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          112 IKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             CCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred             cChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence            5566777778888888888877765443 5677778888888888777655441112345777888888887777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.59  E-value=1.2e-14  Score=126.06  Aligned_cols=119  Identities=24%  Similarity=0.277  Sum_probs=75.8

Q ss_pred             CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchH-HhhcCCCCCEEEccCccccCccchHh
Q 045099           90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS-YLNTLTSLTTLILCDNSIEGSRTKQG  168 (217)
Q Consensus        90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~  168 (217)
                      ..+..+++|++|++++|.+++..+.  +..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|. .
T Consensus       371 ~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~  447 (562)
T 3a79_B          371 QGCSTLKRLQTLILQRNGLKNFFKV--ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-C  447 (562)
T ss_dssp             TTCCSCSSCCEEECCSSCCCBTTHH--HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-S
T ss_pred             hhhcccCCCCEEECCCCCcCCcccc--hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-h
Confidence            3455566666666666666653210  01455666666666666666653443 355566666666666666654332 1


Q ss_pred             hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +.  ++|++|++++|+++. +|.  .+..+++|++|++++|+++++|+
T Consensus       448 l~--~~L~~L~L~~N~l~~-ip~--~~~~l~~L~~L~L~~N~l~~l~~  490 (562)
T 3a79_B          448 LP--PKVKVLDLHNNRIMS-IPK--DVTHLQALQELNVASNQLKSVPD  490 (562)
T ss_dssp             CC--TTCSEEECCSSCCCC-CCT--TTTSSCCCSEEECCSSCCCCCCT
T ss_pred             hc--CcCCEEECCCCcCcc-cCh--hhcCCCCCCEEECCCCCCCCCCH
Confidence            21  577888888887774 666  56688888899999988888875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=7.2e-15  Score=125.53  Aligned_cols=113  Identities=22%  Similarity=0.087  Sum_probs=98.2

Q ss_pred             CCCCCCCCCccEEECCCCcCCCccCcchhhccc-CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchH
Q 045099           89 LSLFPPFQELQSLDLSENWFGGVSESKAYNSSG-NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQ  167 (217)
Q Consensus        89 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~  167 (217)
                      +..+..+++|++|++++|.+++.++.    .+. .+++|++|+|++|.+++..  ....+++|+.|++++|.+++ +|+ 
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~-  208 (487)
T 3oja_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGP-  208 (487)
T ss_dssp             GBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECG-
T ss_pred             chhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCH-
Confidence            44567789999999999999998776    554 7899999999999999753  23468999999999999996 555 


Q ss_pred             hhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          168 GLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       168 ~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      .+..+++|+.|++++|.+++ +|.  .+..+++|+.|++++|.+.
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~--~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEK--ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECT--TCCCCTTCCEEECTTCCBC
T ss_pred             hHcCCCCccEEEecCCcCcc-cch--hhccCCCCCEEEcCCCCCc
Confidence            58899999999999999997 777  7889999999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.58  E-value=2.1e-14  Score=114.71  Aligned_cols=127  Identities=34%  Similarity=0.329  Sum_probs=101.7

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.+             +..  +..+++|++|++++|.+++..      .+..+++|++|++++|.+++
T Consensus        68 ~~L~~L~L~~n~l~~-------------~~~--l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~L~~n~i~~  126 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTD-------------IKP--LANLKNLGWLFLDENKVKDLS------SLKDLKKLKSLSLEHNGISD  126 (291)
T ss_dssp             TTCCEEECCSSCCCC-------------CGG--GTTCTTCCEEECCSSCCCCGG------GGTTCTTCCEEECTTSCCCC
T ss_pred             CCCCEEEccCCccCC-------------Ccc--cccCCCCCEEECCCCcCCCCh------hhccCCCCCEEECCCCcCCC
Confidence            356666666666551             112  678899999999999988742      57889999999999999986


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      .  ..+..+++|+.|++++|++++ ++  .+..+++|++|++++|.+++..    .+..+++|++|++++|++++++
T Consensus       127 ~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          127 I--NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             C--GGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCBCG
T ss_pred             C--hhhcCCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCccccch----hhcCCCccCEEECCCCcCCCCh
Confidence            3  467889999999999999985 43  5888999999999999998743    3678999999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.58  E-value=1.2e-15  Score=131.58  Aligned_cols=137  Identities=25%  Similarity=0.282  Sum_probs=108.3

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.             .+.+..|..+++|++|++++|.+++.++.    .|..+++|++|++++|.+++
T Consensus        50 ~~L~~L~Ls~n~i~-------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           50 ANLQVLILKSSRIN-------------TIEGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSS
T ss_pred             CcccEEECCCCCcC-------------ccChhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccc
Confidence            47888999988876             34456688889999999999999887775    68889999999999999885


Q ss_pred             -cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccC--------------------
Q 045099          139 -SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS--------------------  197 (217)
Q Consensus       139 -~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~--------------------  197 (217)
                       ..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++.+|.  .+..                    
T Consensus       113 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~  190 (549)
T 2z81_A          113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKSIRDIHHLTLHLSESAFLLEI  190 (549)
T ss_dssp             SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSEEEEEEEECSBSTTHHHH
T ss_pred             cchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh--hhhccccCceEecccCcccccchh
Confidence             34567888899999999999855567655688888999999999988876665  4443                    


Q ss_pred             ----CCCCCEEeccCCCCCCC
Q 045099          198 ----LRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       198 ----l~~L~~L~l~~N~l~~~  214 (217)
                          +++|++|++++|++++.
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          191 FADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             HHHSTTTBSEEEEESCBCTTC
T ss_pred             hHhhcccccEEEccCCccccc
Confidence                56777777777777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=7.2e-15  Score=127.66  Aligned_cols=108  Identities=29%  Similarity=0.299  Sum_probs=99.1

Q ss_pred             CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099           97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ  176 (217)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  176 (217)
                      .|+.|++++|.+++. |     .+..+++|+.|+|++|.++ .+|..++.+++|+.|++++|++++ +|  .+..+++|+
T Consensus       442 ~L~~L~Ls~n~l~~l-p-----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-C-----HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSSC-C-----CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred             CceEEEecCCCCCCC-c-----CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence            588999999999984 4     5788999999999999999 789999999999999999999996 66  589999999


Q ss_pred             EEEccCCcCcccc-cccccccCCCCCCEEeccCCCCCCCCC
Q 045099          177 VLDLSGNPITGRF-IARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       177 ~L~L~~n~l~~~~-p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +|+|++|.+++.. |.  .+..+++|+.|+|++|+++++|+
T Consensus       512 ~L~Ls~N~l~~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQ--PLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             EEECCSSCCCSSSTTG--GGGGCTTCCEEECTTSGGGGSSS
T ss_pred             EEECCCCCCCCCCCcH--HHhcCCCCCEEEecCCcCCCCcc
Confidence            9999999999876 88  89999999999999999999876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.58  E-value=8.2e-15  Score=127.04  Aligned_cols=148  Identities=23%  Similarity=0.231  Sum_probs=113.5

Q ss_pred             CCcEEEEecCCccccCCCCCCCCC-CCceeecC------------CCCCCCCCccEEECCCCcCCCccCcchhhcccCCC
Q 045099           58 AGRVTELSLNRLKHYKSSNPNNSS-DGVIILDL------------SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLK  124 (217)
Q Consensus        58 ~~~v~~l~l~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~  124 (217)
                      ...++.++++++.+.+..+..... ..+..+..            ..+..+++|++|++++|.+++.+|..   .+..++
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~  428 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR---TCAWAE  428 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---CCCCCT
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh---hhcCcc
Confidence            457888899988888754433211 12222211            24678899999999999999854431   577889


Q ss_pred             CCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEE
Q 045099          125 QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL  204 (217)
Q Consensus       125 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L  204 (217)
                      +|++|++++|.+++.+|..+.  ++|+.|++++|+++ .+|. .+..+++|++|++++|+++. +|.. .+..+++|+.|
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L  502 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK-DVTHLQALQELNVASNQLKS-VPDG-VFDRLTSLQYI  502 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT-TTTSSCCCSEEECCSSCCCC-CCTT-STTTCTTCCCE
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh-hhcCCCCCCEEECCCCCCCC-CCHH-HHhcCCCCCEE
Confidence            999999999999887766543  68999999999998 6887 45689999999999999995 5651 38899999999


Q ss_pred             eccCCCCCCC
Q 045099          205 DLSNNYGFTT  214 (217)
Q Consensus       205 ~l~~N~l~~~  214 (217)
                      ++++|.+.+.
T Consensus       503 ~l~~N~~~c~  512 (562)
T 3a79_B          503 WLHDNPWDCT  512 (562)
T ss_dssp             ECCSCCBCCC
T ss_pred             EecCCCcCCC
Confidence            9999998763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.58  E-value=2.7e-14  Score=114.17  Aligned_cols=127  Identities=36%  Similarity=0.419  Sum_probs=90.0

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.          .     .+.+..+++|++|++++|.+++. +     .+..+++|++|++++|.+++
T Consensus        90 ~~L~~L~l~~n~l~----------~-----~~~l~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~  148 (291)
T 1h6t_A           90 KNLGWLFLDENKVK----------D-----LSSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITD  148 (291)
T ss_dssp             TTCCEEECCSSCCC----------C-----GGGGTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCcCC----------C-----ChhhccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCc
Confidence            35666677766655          1     12366777888888888887774 2     56677888888888888875


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      .  ..+..+++|+.|++++|++++ +++  +..+++|++|++++|.+++ ++   .+..+++|+.|++++|+++..|
T Consensus       149 ~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~~-l~---~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          149 I--TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISD-LR---ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCB-CG---GGTTCTTCSEEEEEEEEEECCC
T ss_pred             c--hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCCC-Ch---hhccCCCCCEEECcCCcccCCc
Confidence            4  467777888888888888875 333  6777888888888888776 33   4677788888888888776544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.58  E-value=5.6e-15  Score=119.36  Aligned_cols=111  Identities=21%  Similarity=0.160  Sum_probs=55.6

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHh-hcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-NTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      +++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++ ++.  ...++
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~--~~~l~  191 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVVFA  191 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGB----CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCCCT
T ss_pred             cCCCCEEECCCCCCCCccch----hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc--ccccc
Confidence            44556666666666555444    44555555555555555555444443 244555555555555542 222  22344


Q ss_pred             CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      +|++|++++|.+++ +|.  .+..+++|++|++++|+++++|
T Consensus       192 ~L~~L~Ls~N~l~~-l~~--~~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          192 KLKTLDLSSNKLAF-MGP--EFQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             TCCEEECCSSCCCE-ECG--GGGGGTTCSEEECTTSCCCEEC
T ss_pred             cCCEEECCCCcCCc-chh--hhcccCcccEEECcCCcccchh
Confidence            55555555555553 233  3444455555555555544443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.58  E-value=3.2e-14  Score=114.60  Aligned_cols=109  Identities=29%  Similarity=0.349  Sum_probs=61.9

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|.+++..      .+..+++|++|++++|.+++..+  +..+++|+.|++++|++++ ++.  +..
T Consensus       103 ~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~  171 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--LAN  171 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTT
T ss_pred             hcCCCCCCEEECCCCCCCCch------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh--hcC
Confidence            455566666666666665532      34556666666666666654322  5556666666666666653 332  555


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      +++|+.|++++|.+++. +   .+..+++|++|++++|++++++
T Consensus       172 l~~L~~L~l~~n~l~~~-~---~l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDI-S---PLASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             CTTCCEEECCSSCCCCC-G---GGGGCTTCCEEECTTSCCCBCG
T ss_pred             CCCCCEEECCCCccCcC-h---hhcCCCCCCEEEccCCccCccc
Confidence            66666666666666542 2   2455566666666666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.57  E-value=3.7e-14  Score=114.16  Aligned_cols=128  Identities=25%  Similarity=0.297  Sum_probs=104.5

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.             .+..  +..+++|++|++++|.+++..      .+..+++|++|++++|.+++
T Consensus        63 ~~L~~L~L~~n~i~-------------~~~~--~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~  121 (308)
T 1h6u_A           63 NNLIGLELKDNQIT-------------DLAP--LKNLTKITELELSGNPLKNVS------AIAGLQSIKTLDLTSTQITD  121 (308)
T ss_dssp             TTCCEEECCSSCCC-------------CCGG--GTTCCSCCEEECCSCCCSCCG------GGTTCTTCCEEECTTSCCCC
T ss_pred             CCCCEEEccCCcCC-------------CChh--HccCCCCCEEEccCCcCCCch------hhcCCCCCCEEECCCCCCCC
Confidence            35667777777665             1122  778899999999999998752      67889999999999999986


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      . +. +..+++|++|++++|.+++ ++.  +..+++|++|++++|.+++. +   .+..+++|+.|++++|+++++++
T Consensus       122 ~-~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~-~---~l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          122 V-TP-LAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNAQVSDL-T---PLANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             C-GG-GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC-G---GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             c-hh-hcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccCCcCCCC-h---hhcCCCCCCEEECCCCccCcChh
Confidence            4 33 8899999999999999985 443  78899999999999999973 3   36889999999999999988763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.57  E-value=7e-15  Score=133.24  Aligned_cols=117  Identities=24%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..++.++++++...+            .+.+..|..+++|++|++++|.+++..|.    .|.++++|++|+|++|.+++
T Consensus        48 ~~L~~LdLs~n~~~~------------~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~  111 (844)
T 3j0a_A           48 EQLQLLELGSQYTPL------------TIDKEAFRNLPNLRILDLGSSKIYFLHPD----AFQGLFHLFELRLYFCGLSD  111 (844)
T ss_dssp             CSCSEEEECTTCCCC------------EECTTTTSSCTTCCEEECTTCCCCEECTT----SSCSCSSCCCEECTTCCCSS
T ss_pred             ccCeEEeCCCCCCcc------------ccCHHHhcCCCCCCEEECCCCcCcccCHh----HccCCcccCEeeCcCCCCCc
Confidence            456778888775442            23344556666666666666666665555    56666666666666666665


Q ss_pred             cchHH--hhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccc
Q 045099          139 SILSY--LNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIA  191 (217)
Q Consensus       139 ~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  191 (217)
                      .+|..  +..+++|++|++++|.+++..+...+.++++|++|++++|.+++..+.
T Consensus       112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A          112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence            44443  556666666666666665443322456666666666666666554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.57  E-value=1.9e-14  Score=116.20  Aligned_cols=115  Identities=23%  Similarity=0.096  Sum_probs=97.8

Q ss_pred             ecCCCCCCCCCccEEECCCCcCCCccCcchhhcc-cCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccc
Q 045099           87 LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSS-GNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT  165 (217)
Q Consensus        87 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  165 (217)
                      +....+..+++|++|++++|.+++..+.    .+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ +|
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~  207 (317)
T 3o53_A          135 LRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MG  207 (317)
T ss_dssp             GGGBCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-EC
T ss_pred             ccchhhhccCCCCEEECCCCCCCcccHH----HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-ch
Confidence            3344567789999999999999997765    44 4789999999999999865 3 23458999999999999985 66


Q ss_pred             hHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      . .+..+++|++|++++|.++. +|.  .+..+++|+.|++++|.+.
T Consensus       208 ~-~~~~l~~L~~L~L~~N~l~~-l~~--~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          208 P-EFQSAAGVTWISLRNNKLVL-IEK--ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             G-GGGGGTTCSEEECTTSCCCE-ECT--TCCCCTTCCEEECTTCCCB
T ss_pred             h-hhcccCcccEEECcCCcccc-hhh--HhhcCCCCCEEEccCCCcc
Confidence            5 58899999999999999995 787  7889999999999999986

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=2.3e-14  Score=106.06  Aligned_cols=128  Identities=26%  Similarity=0.326  Sum_probs=106.4

Q ss_pred             CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099           45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK  115 (217)
Q Consensus        45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  115 (217)
                      -.|.|.++.|...         ...++.++++++.+.             .+....+..+++|++|++++|.+++..+. 
T Consensus         5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-   70 (177)
T 2o6r_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-------------SLPHGVFDKLTQLTKLSLSQNQIQSLPDG-   70 (177)
T ss_dssp             CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCC-------------CCCTTTTTTCTTCSEEECCSSCCCCCCTT-
T ss_pred             CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCccc-------------EeCHHHhcCcccccEEECCCCcceEeChh-
Confidence            4578999999642         246778888887766             23445678899999999999999987775 


Q ss_pred             hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc
Q 045099          116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI  190 (217)
Q Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  190 (217)
                         .+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ +|...+..+++|++|++++|++++..+
T Consensus        71 ---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           71 ---VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ---HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeeccCc
Confidence               67899999999999999997777778899999999999999985 665467889999999999999997654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=3e-14  Score=112.27  Aligned_cols=126  Identities=29%  Similarity=0.396  Sum_probs=97.9

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..++.++++++.+.+             +..  +..+++|++|++++|.+++..+      +.. ++|++|++++|.+++
T Consensus        63 ~~L~~L~L~~N~i~~-------------~~~--l~~l~~L~~L~L~~N~l~~l~~------~~~-~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           63 TNLKELHLSHNQISD-------------LSP--LKDLTKLEELSVNRNRLKNLNG------IPS-ACLSRLFLDNNELRD  120 (263)
T ss_dssp             TTCCEEECCSSCCCC-------------CGG--GTTCSSCCEEECCSSCCSCCTT------CCC-SSCCEEECCSSCCSB
T ss_pred             CCCCEEECCCCccCC-------------Chh--hccCCCCCEEECCCCccCCcCc------ccc-CcccEEEccCCccCC
Confidence            356666676666551             122  6788889999999998888543      233 889999999999986


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      .  +.+..+++|+.|++++|++++ ++  .+..+++|++|++++|.+++.  .  .+..+++|+.|++++|.++..|
T Consensus       121 ~--~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~--~--~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          121 T--DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNT--G--GLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             S--GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBC--T--TSTTCCCCCEEEEEEEEEECCC
T ss_pred             C--hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcch--H--HhccCCCCCEEeCCCCcccCCc
Confidence            3  358889999999999999985 44  478889999999999999875  4  6788999999999999887664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=4.8e-14  Score=123.31  Aligned_cols=141  Identities=36%  Similarity=0.402  Sum_probs=101.3

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceee--------cCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEE
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIIL--------DLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILN  130 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~  130 (217)
                      ..++.|+++++.+.+..+ ......+..+        ..+.+..+++|++|+|++|.+++. +     .+..+++|+.|+
T Consensus        65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~-----~l~~l~~L~~L~  137 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLY  137 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCSEEE
T ss_pred             CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC-c-----cccCCCccCEEE
Confidence            467778888877664321 0000111111        123567788888888888888874 2     577888888888


Q ss_pred             ccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCC
Q 045099          131 LGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY  210 (217)
Q Consensus       131 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~  210 (217)
                      |++|.+++.  ..+..+++|+.|+|++|.+++. ++  +..+++|+.|+|++|.+++ ++   .+..+++|+.|+|++|+
T Consensus       138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~i~~-l~---~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLSKNHISD-LR---ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCB-CG---GGTTCTTCSEEECCSEE
T ss_pred             CCCCccCCc--hhhcccCCCCEEECcCCcCCCc-hh--hccCCCCCEEECcCCCCCC-Ch---HHccCCCCCEEEccCCc
Confidence            888888864  5678888888888888888854 33  7788888999999888886 33   57788889999999888


Q ss_pred             CCCCC
Q 045099          211 GFTTP  215 (217)
Q Consensus       211 l~~~p  215 (217)
                      +++.|
T Consensus       209 l~~~p  213 (605)
T 1m9s_A          209 CLNKP  213 (605)
T ss_dssp             EECCC
T ss_pred             CcCCc
Confidence            87765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=3e-14  Score=129.04  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=96.2

Q ss_pred             cEEEEecCCccccCCCCCCC------CCCCceeecC----------CCCCCCCCccEEECCCCcCCCccCcchhhc----
Q 045099           60 RVTELSLNRLKHYKSSNPNN------SSDGVIILDL----------SLFPPFQELQSLDLSENWFGGVSESKAYNS----  119 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~------~~~~~~~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----  119 (217)
                      ++..++++++.+.+..+...      ....+..++.          ..+..+++|++|++++|.++..+.. .+..    
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~-~~~~~~~~  723 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN-SLKPKDGN  723 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT-SSSCTTSC
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH-Hhcccccc
Confidence            37778888887776443211      0012222221          1223567788888888877743332 1100    


Q ss_pred             ccCCCCCCEEEccCCCCCccchHHhh--cCCCCCEEEccCccccCccchHhhcCCCCCCEEEccC------CcCcccccc
Q 045099          120 SGNLKQLKILNLGNNRLNDSILSYLN--TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSG------NPITGRFIA  191 (217)
Q Consensus       120 ~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~------n~l~~~~p~  191 (217)
                      +.++++|+.|+|++|+++ .+|..+.  .+++|+.|++++|++++ +|. .+..+++|+.|+|++      |.+.+.+|.
T Consensus       724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~  800 (876)
T 4ecn_A          724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPT  800 (876)
T ss_dssp             CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred             ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch-hhhcCCCCCEEECCCCCCcccccccccChH
Confidence            112337888888888887 5676665  77888888888888875 665 567778888887765      667777777


Q ss_pred             cccccCCCCCCEEeccCCCCCCCCC
Q 045099          192 RLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       192 ~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                        .+..+++|+.|+|++|++..+|.
T Consensus       801 --~l~~L~~L~~L~Ls~N~L~~Ip~  823 (876)
T 4ecn_A          801 --GITTCPSLIQLQIGSNDIRKVDE  823 (876)
T ss_dssp             --TGGGCSSCCEEECCSSCCCBCCS
T ss_pred             --HHhcCCCCCEEECCCCCCCccCH
Confidence              77778888888888888766664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.5e-14  Score=107.07  Aligned_cols=116  Identities=21%  Similarity=0.154  Sum_probs=95.9

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCC-CCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLK-QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL  169 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~  169 (217)
                      .+..+.+|++|++++|.++.. +     .+..+. +|++|++++|.+++.  ..+..+++|++|++++|++++ +|+..+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~-----~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-E-----NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLD   84 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-C-----CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred             hcCCcCCceEEEeeCCCCchh-H-----HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchh
Confidence            355688999999999999965 4     344554 999999999999964  678889999999999999985 554356


Q ss_pred             cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..+++|++|++++|.++. +|....+..+++|+.|++++|.++.+|.
T Consensus        85 ~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             HHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             hcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence            889999999999999976 3421157889999999999999987764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=6.1e-14  Score=110.50  Aligned_cols=125  Identities=26%  Similarity=0.351  Sum_probs=104.6

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.             .  .+.+..+++|++|++++|.+++..+      +..+++|++|++++|++++
T Consensus        41 ~~L~~L~l~~n~i~-------------~--l~~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~   99 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ-------------S--LAGMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN   99 (263)
T ss_dssp             TTCSEEECTTSCCC-------------C--CTTGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC
T ss_pred             CcCcEEECcCCCcc-------------c--chHHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC
Confidence            46778889888776             1  1256788999999999999998653      6789999999999999986


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                       +|. +.. ++|+.|++++|++++ ++  .+..+++|++|++++|++++. +   .+..+++|+.|++++|+++++
T Consensus       100 -l~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~-~---~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          100 -LNG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI-V---MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             -CTT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC-G---GGGGCTTCCEEECTTSCCCBC
T ss_pred             -cCc-ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC-h---HHccCCCCCEEECCCCcCcch
Confidence             443 233 899999999999985 54  488999999999999999974 3   578899999999999999876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.52  E-value=1e-13  Score=121.27  Aligned_cols=109  Identities=34%  Similarity=0.346  Sum_probs=85.4

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|+.|+|++|.+++..      .+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++ ++  .+..
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~  151 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLS------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-IT--VLSR  151 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCT------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG--GGGS
T ss_pred             hccCCCCCEEECcCCCCCCCh------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-ch--hhcc
Confidence            566778888888888877632      567888888888888888853  457788888888888888885 43  5788


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      +++|+.|+|++|.+++..|    +..+++|+.|+|++|++++++
T Consensus       152 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          152 LTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             CTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBCG
T ss_pred             cCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCCh
Confidence            8888999998888887433    577888999999998888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.52  E-value=9.9e-14  Score=112.98  Aligned_cols=111  Identities=30%  Similarity=0.333  Sum_probs=65.6

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|.+++..      .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++ ++  .+..
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~--~~~~  285 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLS------PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS--VLNN  285 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG--GGGG
T ss_pred             hhcCCcCCEEEccCCccCCCc------chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch--hhcC
Confidence            445566666666666665543      244566666666666666542  345556666666666666653 32  3555


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      +++|++|++++|.+++..+.  .+..+++|++|++++|++++++
T Consensus       286 l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDME--VIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGHH--HHHTCTTCSEEECCSSSCCCCG
T ss_pred             CCCCCEEECcCCcCCCcChh--HhhccccCCEEEccCCcccccc
Confidence            66666666666666655555  5566666666666666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.51  E-value=1.5e-13  Score=111.93  Aligned_cols=108  Identities=30%  Similarity=0.418  Sum_probs=93.0

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|.+++. +     .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+. .+..
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~  309 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI-N-----AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGG  309 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHT
T ss_pred             hhcCCCCCEEECCCCccCCC-h-----hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-Hhhc
Confidence            77899999999999999885 2     678999999999999999864  4588999999999999999865554 7899


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      +++|++|++++|++++..|    +..+++|++|++++|.++
T Consensus       310 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDIRP----LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSSCCCCGG----GGGCTTCSEESSSCC---
T ss_pred             cccCCEEEccCCccccccC----hhhhhccceeehhhhccc
Confidence            9999999999999998544    578999999999999986

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=7.6e-14  Score=121.22  Aligned_cols=124  Identities=23%  Similarity=0.272  Sum_probs=102.8

Q ss_pred             cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc
Q 045099           60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS  139 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  139 (217)
                      .++.++++++.+.+             +  +.+..+++|++|++++|.++ .+|.    .+..+++|++|+|++|.+++ 
T Consensus       442 ~L~~L~Ls~n~l~~-------------l--p~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-------------L--CHLEQLLLVTHLDLSHNRLR-ALPP----ALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             TCSEEECTTSCCSS-------------C--CCGGGGTTCCEEECCSSCCC-CCCG----GGGGCTTCCEEECCSSCCCC-
T ss_pred             CceEEEecCCCCCC-------------C--cCccccccCcEeecCccccc-ccch----hhhcCCCCCEEECCCCCCCC-
Confidence            46678898888772             2  12788999999999999999 4565    88999999999999999997 


Q ss_pred             chHHhhcCCCCCEEEccCccccCcc-chHhhcCCCCCCEEEccCCcCcccccccc-cccCCCCCCEEec
Q 045099          140 ILSYLNTLTSLTTLILCDNSIEGSR-TKQGLANLRYLQVLDLSGNPITGRFIARL-GLSSLRNLKRLDL  206 (217)
Q Consensus       140 ~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~l~~l~~L~~L~l  206 (217)
                      +| .++.+++|+.|++++|++++.. |. .+..+++|+.|+|++|++++.+|... .+..+++|+.|++
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            67 8999999999999999999754 65 79999999999999999998654311 2344899999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.9e-13  Score=100.74  Aligned_cols=108  Identities=21%  Similarity=0.169  Sum_probs=88.4

Q ss_pred             ccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCE
Q 045099           98 LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQV  177 (217)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~  177 (217)
                      .+.+++++|.++..+.     .+  .++|++|+|++|.+++..|..+..+++|++|++++|++++ ++...+..+++|++
T Consensus        11 ~~~l~~s~n~l~~ip~-----~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~   82 (170)
T 3g39_A           11 GTTVDCSGKSLASVPT-----GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQ   82 (170)
T ss_dssp             TTEEECTTSCCSSCCS-----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CCEEEeCCCCcCccCc-----cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCE
Confidence            4678888888877543     33  3788999999999998778888899999999999999985 55546788999999


Q ss_pred             EEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          178 LDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       178 L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      |+|++|++++..+.  .+..+++|++|+|++|.+...+
T Consensus        83 L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           83 LSLNDNQLKSIPRG--AFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCBCTTB
T ss_pred             EECCCCccCEeCHH--HhcCCCCCCEEEeCCCCCCCCc
Confidence            99999999986665  6888999999999999887654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=2.4e-15  Score=134.15  Aligned_cols=92  Identities=28%  Similarity=0.399  Sum_probs=83.6

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|+|++|.|+ .+|.    .|..+++|++|+|++|.|+ .+|..++.+++|++|+|++|.++ .+|. .+..
T Consensus       243 ~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~  314 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNSLT-ELPA----EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW-EFGN  314 (727)
T ss_dssp             GGGCCSCSCCBCTTSCCS-CCCG----GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS-STTS
T ss_pred             hcCCCCCCEEEeeCCcCc-ccCh----hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh-hhhc
Confidence            347899999999999999 5565    7899999999999999999 78999999999999999999997 6887 6999


Q ss_pred             CCCCCEEEccCCcCcccccc
Q 045099          172 LRYLQVLDLSGNPITGRFIA  191 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~  191 (217)
                      +++|++|+|++|.+++.+|.
T Consensus       315 l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CTTCCCEECTTSCCCSHHHH
T ss_pred             CCCccEEeCCCCccCCCChH
Confidence            99999999999999987776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.49  E-value=4.7e-14  Score=122.43  Aligned_cols=154  Identities=23%  Similarity=0.246  Sum_probs=108.1

Q ss_pred             ccCCCcCCCCCCCc-----cccce-EEcCCCCcEEEEecCCccccCCCCCCCCCCCceeecCC--CC----CCCCCccEE
Q 045099           34 ILTSWVDDGISDCC-----DWERL-KCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLS--LF----PPFQELQSL  101 (217)
Q Consensus        34 ~l~~W~~~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~l~~L~~L  101 (217)
                      .+.+|..  ...+|     .|.++ .|..  .+++.++++++.+.+ ++.... ..+..++..  .+    ..+++|++|
T Consensus        32 ~l~~W~~--~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~~ip~~l~~L~~L  105 (571)
T 3cvr_A           32 AWDKWEK--QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALISLPELPASLEYL  105 (571)
T ss_dssp             HHHHHHT--TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCSCCCCCCTTCCEE
T ss_pred             HHHHHhc--cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCcccccccCCCCEE
Confidence            4566865  34667     69999 6853  478899999999875 433221 122222111  00    346788888


Q ss_pred             ECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEcc
Q 045099          102 DLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS  181 (217)
Q Consensus       102 ~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~  181 (217)
                      ++++|.+++ +|     .+..  +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.    .+++|++|+++
T Consensus       106 ~Ls~N~l~~-ip-----~l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls  168 (571)
T 3cvr_A          106 DACDNRLST-LP-----ELPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVR  168 (571)
T ss_dssp             ECCSSCCSC-CC-----CCCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECC
T ss_pred             EccCCCCCC-cc-----hhhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECC
Confidence            888888887 44     2222  88888888888886 555   57888899999998885 664    46788999999


Q ss_pred             CCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          182 GNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       182 ~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +|.+++ +|.   +.  ++|+.|+|++|+|+.+|.
T Consensus       169 ~N~L~~-lp~---l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          169 NNQLTF-LPE---LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             SSCCSC-CCC---CC--TTCCEEECCSSCCSSCCC
T ss_pred             CCCCCC-cch---hh--CCCCEEECcCCCCCchhh
Confidence            998887 564   33  789999999999888764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=3.2e-13  Score=99.89  Aligned_cols=108  Identities=19%  Similarity=0.170  Sum_probs=91.0

Q ss_pred             cEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEE
Q 045099           99 QSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL  178 (217)
Q Consensus        99 ~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L  178 (217)
                      +.+++++|.++..+.     .+  .++|++|+|++|.+++..|..+..+++|++|+|++|++++ +|...+..+++|++|
T Consensus        15 ~~l~~~~n~l~~iP~-----~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA-----GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCCSSCCS-----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             cEEEeCCCCCCccCC-----Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEE
Confidence            678888888866443     33  3789999999999998888889999999999999999985 665467889999999


Q ss_pred             EccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          179 DLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       179 ~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +|++|++++..+.  .+..+++|++|+|++|.+...++
T Consensus        87 ~L~~N~l~~l~~~--~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           87 DLNDNHLKSIPRG--AFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             ECCSSCCCCCCTT--TTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ECCCCccceeCHH--HhccccCCCEEEeCCCCcccccc
Confidence            9999999975555  68899999999999999886653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=4e-13  Score=113.90  Aligned_cols=107  Identities=29%  Similarity=0.392  Sum_probs=55.8

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      .+++|++|++++|.+++..      .+..+++|++|++++|.+++..|  +..+++|+.|++++|.+++ ++  .+..++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l~  353 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLANLT  353 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTTCT
T ss_pred             CCCccCeEEcCCCcccCch------hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhccCC
Confidence            3444444444444444422      23445555555555555554433  4455555555555555553 22  355556


Q ss_pred             CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      +|++|++++|++++..|    +..+++|+.|++++|.++++|
T Consensus       354 ~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          354 NINWLSAGHNQISDLTP----LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             TCCEEECCSSCCCBCGG----GTTCTTCCEEECCCEEEECCC
T ss_pred             CCCEEeCCCCccCccch----hhcCCCCCEEeccCCcccCCc
Confidence            66666666666655433    345566666666666666544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.47  E-value=3.7e-13  Score=114.10  Aligned_cols=128  Identities=25%  Similarity=0.290  Sum_probs=108.2

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.+.               ..+..+++|++|++++|.+++..      .+..+++|++|++++|.+++
T Consensus       243 ~~L~~L~l~~n~l~~~---------------~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~  301 (466)
T 1o6v_A          243 TNLTDLDLANNQISNL---------------APLSGLTKLTELKLGANQISNIS------PLAGLTALTNLELNENQLED  301 (466)
T ss_dssp             TTCSEEECCSSCCCCC---------------GGGTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCSC
T ss_pred             CCCCEEECCCCccccc---------------hhhhcCCCCCEEECCCCccCccc------cccCCCccCeEEcCCCcccC
Confidence            4677888888877621               12678899999999999999865      36789999999999999997


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ..+  +..+++|+.|++++|++++..|   +..+++|+.|++++|.+++.  .  .+..+++|+.|++++|++++.+|
T Consensus       302 ~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          302 ISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--S--SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--G--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             chh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--h--hhccCCCCCEEeCCCCccCccch
Confidence            554  7899999999999999996443   67899999999999999974  3  67899999999999999988764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.46  E-value=1.2e-14  Score=117.90  Aligned_cols=112  Identities=21%  Similarity=0.192  Sum_probs=95.2

Q ss_pred             CCCCCCccEEECCCCcCCCc-cCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCc-cccCc-cchHh
Q 045099           92 FPPFQELQSLDLSENWFGGV-SESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN-SIEGS-RTKQG  168 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~  168 (217)
                      +..+++|++|++++|.+++. .+.    .+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++. .
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~  163 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-L  163 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-H
T ss_pred             hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-H
Confidence            45689999999999998765 444    6788999999999999999888999999999999999999 67753 443 5


Q ss_pred             hcCCCCCCEEEccCC-cCccc-ccccccccCCC-CCCEEeccCCC
Q 045099          169 LANLRYLQVLDLSGN-PITGR-FIARLGLSSLR-NLKRLDLSNNY  210 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n-~l~~~-~p~~~~l~~l~-~L~~L~l~~N~  210 (217)
                      +..+++|++|++++| .+++. ++.  .+..++ +|++|++++|.
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQV--AVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHH--HHHHSCTTCCEEECCSCG
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHH--HHHhcccCCCEEEeCCCc
Confidence            788999999999999 88864 565  678899 99999999994

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.46  E-value=1.8e-13  Score=111.99  Aligned_cols=119  Identities=19%  Similarity=0.209  Sum_probs=84.9

Q ss_pred             CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcch
Q 045099           46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKA  116 (217)
Q Consensus        46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  116 (217)
                      .|.+..|.|...         ...++.++++++.+.             .++...|..+++|++|+|++|.+.+.++.. 
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-------------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-   73 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-------------VIQKGAFSGFGDLEKIEISQNDVLEVIEAD-   73 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-------------EECTTSSTTCTTCCEEEEECCTTCCEECTT-
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-------------CcCHHHHcCCCCCCEEECcCCCCCCccChh-
Confidence            378889999641         235677888887766             566677899999999999999987766542 


Q ss_pred             hhcccCCCCCCE-EEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEcc
Q 045099          117 YNSSGNLKQLKI-LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS  181 (217)
Q Consensus       117 ~~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~  181 (217)
                        .|.+++++++ +.+..|+++...|..+..+++|++|++++|+++. ++...+....++..+++.
T Consensus        74 --~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~  136 (350)
T 4ay9_X           74 --VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQ  136 (350)
T ss_dssp             --SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEE
T ss_pred             --HhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhc
Confidence              5777888776 4566788887767788889999999999988874 333233333344444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.43  E-value=6.5e-13  Score=108.31  Aligned_cols=90  Identities=23%  Similarity=0.265  Sum_probs=79.4

Q ss_pred             CCCCCCccEEECCC-CcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099           92 FPPFQELQSLDLSE-NWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        92 ~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      +..+.+|++|+|++ |.+++.++.    .|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++ +|...+.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~  101 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ  101 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcc
Confidence            77888999999996 999998877    78999999999999999999888899999999999999999985 5654565


Q ss_pred             CCCCCCEEEccCCcCcc
Q 045099          171 NLRYLQVLDLSGNPITG  187 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~  187 (217)
                      .++ |+.|+|.+|.+..
T Consensus       102 ~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A          102 GLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCC-CCEEECCSSCCCC
T ss_pred             cCC-ceEEEeeCCCccC
Confidence            555 9999999999884

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=1.7e-13  Score=111.10  Aligned_cols=148  Identities=20%  Similarity=0.165  Sum_probs=112.7

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecC-----------CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDL-----------SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK  127 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~  127 (217)
                      ..++.+++.++.+.+..+.......+..++.           ..+..+++|++|++++|.+++..+.    .+..+++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~  145 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLV  145 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCS
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCC
Confidence            3566677777776655444332233333322           2356789999999999998877666    788899999


Q ss_pred             EEEccCC-CCCcc-chHHhhcCCCCCEEEccCc-cccCc-cchHhhcCCC-CCCEEEccCC--cCc-ccccccccccCCC
Q 045099          128 ILNLGNN-RLNDS-ILSYLNTLTSLTTLILCDN-SIEGS-RTKQGLANLR-YLQVLDLSGN--PIT-GRFIARLGLSSLR  199 (217)
Q Consensus       128 ~L~L~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~~~l~~l~  199 (217)
                      +|++++| .+++. ++..+..+++|++|++++| .+++. ++. .+..++ +|++|++++|  .++ +.++.  .+..++
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~--~~~~~~  222 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLST--LVRRCP  222 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHH--HHHHCT
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHH--HHhhCC
Confidence            9999999 78864 6777889999999999999 88854 443 678899 9999999999  566 44666  778899


Q ss_pred             CCCEEeccCCC-CCC
Q 045099          200 NLKRLDLSNNY-GFT  213 (217)
Q Consensus       200 ~L~~L~l~~N~-l~~  213 (217)
                      +|++|++++|. +++
T Consensus       223 ~L~~L~l~~~~~l~~  237 (336)
T 2ast_B          223 NLVHLDLSDSVMLKN  237 (336)
T ss_dssp             TCSEEECTTCTTCCG
T ss_pred             CCCEEeCCCCCcCCH
Confidence            99999999998 553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=1.3e-12  Score=106.62  Aligned_cols=106  Identities=20%  Similarity=0.157  Sum_probs=88.7

Q ss_pred             cEEECCCC-cCCCccCcchhhcccCCCCCCEEEccC-CCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099           99 QSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGN-NRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ  176 (217)
Q Consensus        99 ~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  176 (217)
                      ..++++++ .++. +|     .+..+++|++|+|++ |.|++..+..|..+++|+.|+|++|+|++..|. .|..+++|+
T Consensus        11 ~~v~~~~~n~l~~-ip-----~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LH-----HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTT-TT-----TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCC
T ss_pred             CEEEcCCCCCCCc-cC-----CCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCC
Confidence            45688887 7876 34     367888999999996 999988788899999999999999999975554 789999999


Q ss_pred             EEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       177 ~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +|+|++|++++..+.  .+..++ |+.|+|++|+|...
T Consensus        84 ~L~l~~N~l~~~~~~--~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           84 RLNLSFNALESLSWK--TVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             EEECCSSCCSCCCST--TTCSCC-CCEEECCSSCCCCC
T ss_pred             EEeCCCCccceeCHH--HcccCC-ceEEEeeCCCccCC
Confidence            999999999985554  555555 99999999998743

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=5.1e-16  Score=117.25  Aligned_cols=91  Identities=24%  Similarity=0.350  Sum_probs=47.3

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|.++.. |.    .+..+++|++|++++|.+++ +| .+..+++|+.|++++|++++..+...+..
T Consensus        66 ~~~l~~L~~L~l~~n~l~~l-~~----~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~  138 (198)
T 1ds9_A           66 LSGMENLRILSLGRNLIKKI-EN----LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAA  138 (198)
T ss_dssp             HHHHTTCCEEEEEEEEECSC-SS----HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTT
T ss_pred             cccCCCCCEEECCCCCcccc-cc----hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhc
Confidence            34455555666655555532 22    33444556666666666554 23 35555556666666666553111123555


Q ss_pred             CCCCCEEEccCCcCcccc
Q 045099          172 LRYLQVLDLSGNPITGRF  189 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~  189 (217)
                      +++|++|++++|.+++.+
T Consensus       139 l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A          139 LDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             TTTCSEEEECSCHHHHHH
T ss_pred             CCCCCEEEecCCcccccc
Confidence            566666666666655543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=1.3e-13  Score=114.04  Aligned_cols=121  Identities=19%  Similarity=0.178  Sum_probs=93.6

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhh-cccCCCCCCEEEccCCCCC----ccchHHhhcCCCCCEEEccCccccCc---
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYN-SSGNLKQLKILNLGNNRLN----DSILSYLNTLTSLTTLILCDNSIEGS---  163 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~---  163 (217)
                      +..+++|++|++++|.++......+.. .+..+++|++|+|++|.++    ..+|..+..+++|+.|++++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            345778999999999887321111111 5678899999999999996    56788888999999999999999854   


Q ss_pred             -cchHhh--cCCCCCCEEEccCCcCcc----cccccccc-cCCCCCCEEeccCCCCCCCC
Q 045099          164 -RTKQGL--ANLRYLQVLDLSGNPITG----RFIARLGL-SSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       164 -~p~~~~--~~l~~L~~L~L~~n~l~~----~~p~~~~l-~~l~~L~~L~l~~N~l~~~p  215 (217)
                       ++. .+  ..+++|++|+|++|.+++    .+|.  .+ .++++|++|++++|++++..
T Consensus       263 ~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          263 AVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKT--VIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHH--HHHhcCCCceEEEccCCcCCcch
Confidence             333 45  348999999999999998    4676  55 66899999999999998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.38  E-value=1.9e-13  Score=112.30  Aligned_cols=118  Identities=27%  Similarity=0.312  Sum_probs=75.3

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCC-CCCCEEEccCCCCCccchHHhhc-----CCCCCEEEccCccccCccch---
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNL-KQLKILNLGNNRLNDSILSYLNT-----LTSLTTLILCDNSIEGSRTK---  166 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~~p~---  166 (217)
                      ++|++|++++|.+++..+..+...+..+ ++|++|++++|.+++..+..+..     ..+|++|++++|.+++....   
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            6777888888877766654333334455 67888888888877665554432     25788888888877742221   


Q ss_pred             HhhcCCC-CCCEEEccCCcCcccccccc--cccCC-CCCCEEeccCCCCCC
Q 045099          167 QGLANLR-YLQVLDLSGNPITGRFIARL--GLSSL-RNLKRLDLSNNYGFT  213 (217)
Q Consensus       167 ~~~~~l~-~L~~L~L~~n~l~~~~p~~~--~l~~l-~~L~~L~l~~N~l~~  213 (217)
                      ..+..++ +|++|++++|.+++..+...  .+..+ ++|++|+|++|.+++
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            1234444 78888888888776544300  22334 488888888887765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.36  E-value=1.1e-11  Score=105.01  Aligned_cols=107  Identities=22%  Similarity=0.115  Sum_probs=68.9

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|...+.+      .+..+++|++|++++|.+++ +|  +..+++|+.|++++|++++ +   .+..
T Consensus       144 l~~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~---~l~~  210 (457)
T 3bz5_A          144 VSHNTQLTELDCHLNKKITKL------DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L---DLNQ  210 (457)
T ss_dssp             CTTCTTCCEEECTTCSCCCCC------CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C---CCTT
T ss_pred             cccCCcCCEEECCCCCccccc------ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe-e---cccc
Confidence            445555666666665433333      24566777777777777775 33  6667777777777777764 2   2566


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +++|++|++++|++++ +|    +..+++|+.|++++|+++++|.
T Consensus       211 l~~L~~L~Ls~N~l~~-ip----~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          211 NIQLTFLDCSSNKLTE-ID----VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC----CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCCCCEEECcCCcccc-cC----ccccCCCCEEEeeCCcCCCcCH
Confidence            6777777777777776 33    3567777777777777776653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.36  E-value=9.7e-12  Score=105.35  Aligned_cols=104  Identities=21%  Similarity=0.178  Sum_probs=49.8

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|.+++.       .+..+++|++|++++|.+++ +|  ++.+++|++|++++|++++ ++   +..
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~  146 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSH  146 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTT
T ss_pred             cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---ccc
Confidence            44555566666666655553       13455555555555555554 22  4555555555555555553 22   334


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                      +++|++|++++|...+.+    .+..+++|++|++++|++++
T Consensus       147 l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCC
T ss_pred             CCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccce
Confidence            444444444444322222    12334444444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.35  E-value=7.5e-12  Score=108.60  Aligned_cols=130  Identities=22%  Similarity=0.199  Sum_probs=96.7

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCC--------CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEE
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLS--------LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILN  130 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~  130 (217)
                      .+++.+++++|.+. .++.  ....+..++..        .+..  +|++|++++|.+++ +|     .  .+++|++|+
T Consensus        80 ~~L~~L~Ls~N~l~-~ip~--~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~-lp-----~--~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLPE--LPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM-LP-----E--LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC-CC-----C--CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc-cccc--ccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC-CC-----C--cCccccEEe
Confidence            46888889888877 3331  11222222211        1322  89999999999998 44     3  578999999


Q ss_pred             ccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCC-------CE
Q 045099          131 LGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNL-------KR  203 (217)
Q Consensus       131 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L-------~~  203 (217)
                      +++|.+++ +|.   .+++|+.|++++|++++ +|.  +.  ++|++|+|++|.++. +|.   +..  +|       +.
T Consensus       147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~-lp~---~~~--~L~~~~~~L~~  211 (571)
T 3cvr_A          147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLES-LPA---VPV--RNHHSEETEIF  211 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSS-CCC---CC----------CCEE
T ss_pred             CCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCc-hhh---HHH--hhhcccccceE
Confidence            99999996 555   57899999999999996 775  54  899999999999994 664   222  56       99


Q ss_pred             EeccCCCCCCCCC
Q 045099          204 LDLSNNYGFTTPS  216 (217)
Q Consensus       204 L~l~~N~l~~~p~  216 (217)
                      |+|++|+|+.+|+
T Consensus       212 L~Ls~N~l~~lp~  224 (571)
T 3cvr_A          212 FRCRENRITHIPE  224 (571)
T ss_dssp             EECCSSCCCCCCG
T ss_pred             EecCCCcceecCH
Confidence            9999999999885

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=1.4e-13  Score=113.92  Aligned_cols=115  Identities=19%  Similarity=0.153  Sum_probs=62.5

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc-----chHHhhcCCCCCEEEccCcccc----Cccch
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS-----ILSYLNTLTSLTTLILCDNSIE----GSRTK  166 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~----~~~p~  166 (217)
                      ++|++|++++|.++......+...+..+++|++|++++|.++..     .+..+..+++|+.|++++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            45556666666555222111222444556666666666666521     2224555666666666666664    23443


Q ss_pred             HhhcCCCCCCEEEccCCcCccc----ccccccc--cCCCCCCEEeccCCCCCC
Q 045099          167 QGLANLRYLQVLDLSGNPITGR----FIARLGL--SSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       167 ~~~~~l~~L~~L~L~~n~l~~~----~p~~~~l--~~l~~L~~L~l~~N~l~~  213 (217)
                       .+..+++|++|+|++|.+++.    ++.  .+  +.+++|++|+|++|.+++
T Consensus       239 -~l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          239 -ALKSWPNLRELGLNDCLLSARGAAAVVD--AFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             -HGGGCTTCCEEECTTCCCCHHHHHHHHH--HHHTCSSCCCCEEECCSSCCBH
T ss_pred             -HHccCCCcCEEECCCCCCchhhHHHHHH--HHhhccCCCeEEEECcCCcCCH
Confidence             455666666666666666653    333  33  236666666666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.33  E-value=1.7e-11  Score=103.69  Aligned_cols=106  Identities=22%  Similarity=0.214  Sum_probs=53.7

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      .+..+++|++|++++|.+++. |.    .   .++|++|++++|.+++ +| .++.+++|+.|++++|++++ +|.    
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~l-p~----~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----  212 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKKL-PD----L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----  212 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSCC-CC----C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----
T ss_pred             ccCCCCCCCEEECCCCcCccc-CC----C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----
Confidence            355666666666666666652 21    1   2355555555555554 33 35555555555555555553 322    


Q ss_pred             CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ..++|++|++++|.++ .+|   .+..+++|++|++++|+++++|
T Consensus       213 ~~~~L~~L~l~~n~l~-~lp---~~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          213 LPLSLESIVAGNNILE-ELP---ELQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             CCTTCCEEECCSSCCS-SCC---CCTTCTTCCEEECCSSCCSSCC
T ss_pred             CcCcccEEECcCCcCC-ccc---ccCCCCCCCEEECCCCcCCccc
Confidence            0134444555554444 233   2345555555555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.32  E-value=2.4e-12  Score=105.25  Aligned_cols=150  Identities=16%  Similarity=0.172  Sum_probs=97.8

Q ss_pred             CcEEEEecCCccccCCCCCCC----C---------CCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNN----S---------SDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQ  125 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~----~---------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~  125 (217)
                      .+++.|++++|.+.+.++...    .         .+.+..+.+..|..+++|++|++++|.++...+.    .+....+
T Consensus        54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~  129 (350)
T 4ay9_X           54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV----HKIHSLQ  129 (350)
T ss_dssp             TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC----TTCCBSS
T ss_pred             CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch----hhcccch
Confidence            478899999988765443321    0         1345556677788899999999999999887665    4445556


Q ss_pred             CCEEEccC-CCCCccchHHhhcCC-CCCEEEccCccccCccchHhhcCCCCCCEEEccC-CcCcccccccccccCCCCCC
Q 045099          126 LKILNLGN-NRLNDSILSYLNTLT-SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSG-NPITGRFIARLGLSSLRNLK  202 (217)
Q Consensus       126 L~~L~L~~-n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~l~~l~~L~  202 (217)
                      +..|++.+ +.+....+..+..+. .++.|++++|+++ .++. ......+|+.+++.+ |.++. +|.. .+..+++|+
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~-~~f~~~~L~~l~l~~~n~l~~-i~~~-~f~~l~~L~  205 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNLEE-LPND-VFHGASGPV  205 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT-TSSTTEEEEEEECTTCTTCCC-CCTT-TTTTEECCS
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh-hhccccchhHHhhccCCcccC-CCHH-HhccCcccc
Confidence            66777654 455543334444443 5777778888776 4555 333456677777765 44443 4431 567777788


Q ss_pred             EEeccCCCCCCCCC
Q 045099          203 RLDLSNNYGFTTPS  216 (217)
Q Consensus       203 ~L~l~~N~l~~~p~  216 (217)
                      .|++++|+++.+|+
T Consensus       206 ~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          206 ILDISRTRIHSLPS  219 (350)
T ss_dssp             EEECTTSCCCCCCS
T ss_pred             hhhcCCCCcCccCh
Confidence            88888887777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.30  E-value=3.2e-12  Score=112.04  Aligned_cols=161  Identities=17%  Similarity=0.150  Sum_probs=100.4

Q ss_pred             ccCCCcCCCCCCCccccceEE------cCCCCcEEEEecCCccccCCCCCCCCCCCceeecCC--CC----CCCCCccEE
Q 045099           34 ILTSWVDDGISDCCDWERLKC------NATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLS--LF----PPFQELQSL  101 (217)
Q Consensus        34 ~l~~W~~~~~~~~c~w~gv~c------~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~l~~L~~L  101 (217)
                      ....|..  ..++|.|.+..|      ......++.++++++.+. .++.... ..+..++..  .+    ..+++|++|
T Consensus        11 ~w~~W~~--~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~lp~~l~~L~~L   86 (622)
T 3g06_A           11 VWSAWRR--AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTSLPALPPELRTL   86 (622)
T ss_dssp             HHHHHHH--TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSCCCCCCTTCCEE
T ss_pred             HHHHHHh--cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCCCCCcCCCCCEE
Confidence            4566876  457899966432      111234778888888876 3333221 111111110  00    145778888


Q ss_pred             ECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEcc
Q 045099          102 DLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS  181 (217)
Q Consensus       102 ~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~  181 (217)
                      ++++|.++..+.        .+++|++|++++|.+++ +|.   .+++|+.|++++|++++ +|.    .+++|++|+++
T Consensus        87 ~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~----~l~~L~~L~Ls  149 (622)
T 3g06_A           87 EVSGNQLTSLPV--------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV----LPPGLQELSVS  149 (622)
T ss_dssp             EECSCCCSCCCC--------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECC
T ss_pred             EcCCCcCCcCCC--------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC----CCCCCCEEECc
Confidence            888888875332        56788888888888875 333   56788888888888874 554    24788999999


Q ss_pred             CCcCccccccc-ccccCC--------------CCCCEEeccCCCCCCCCC
Q 045099          182 GNPITGRFIAR-LGLSSL--------------RNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       182 ~n~l~~~~p~~-~~l~~l--------------~~L~~L~l~~N~l~~~p~  216 (217)
                      +|.+++ +|.. ..+..+              ++|+.|++++|+++++|+
T Consensus       150 ~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~  198 (622)
T 3g06_A          150 DNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT  198 (622)
T ss_dssp             SSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred             CCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC
Confidence            988886 3330 012222              667777777777777664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.30  E-value=5e-11  Score=100.89  Aligned_cols=135  Identities=19%  Similarity=0.159  Sum_probs=81.4

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecC-----CCCCCC-CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEcc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDL-----SLFPPF-QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLG  132 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~  132 (217)
                      .+++.++++++.+.+ ++...  ..+..++.     ..+..+ ++|++|++++|.+++ +|     .+..+++|++|+++
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~~--~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPELP--QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVD  161 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCCC--TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECC
T ss_pred             CCCCEEEccCCcCCc-ccccc--CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECC
Confidence            456677777776664 22211  11111111     112222 467777777777766 33     46677777777777


Q ss_pred             CCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          133 NNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       133 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      +|.+++ +|..   ..+|++|++++|++++ +|  .+..+++|++|++++|.+++ +|.  .   .++|++|++++|+++
T Consensus       162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~-l~~--~---~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          162 NNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK-LPD--L---PLSLESIVAGNNILE  228 (454)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-CCC--C---CTTCCEEECCSSCCS
T ss_pred             CCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-CCC--C---cCcccEEECcCCcCC
Confidence            777764 4432   3467777777777774 55  36777777777777777775 443  2   247777777777777


Q ss_pred             CCC
Q 045099          213 TTP  215 (217)
Q Consensus       213 ~~p  215 (217)
                      .+|
T Consensus       229 ~lp  231 (454)
T 1jl5_A          229 ELP  231 (454)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.29  E-value=8.9e-13  Score=108.30  Aligned_cols=145  Identities=24%  Similarity=0.259  Sum_probs=104.3

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCC-CccEEECCCCcCCCccCcchhhcccCC-CCCCEEEccCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQ-ELQSLDLSENWFGGVSESKAYNSSGNL-KQLKILNLGNNRL  136 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~l-~~L~~L~L~~n~l  136 (217)
                      ..++.++++++.+.+..        ...+ ...+..++ +|++|++++|.+++..+..+...+... ++|++|++++|.+
T Consensus        22 ~~L~~L~Ls~n~l~~~~--------~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSIS--------TVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             TTCCEEECTTSCGGGSC--------HHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             CCceEEEccCCCCChHH--------HHHH-HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            45888999998877220        0000 03456677 899999999999887766332233333 8999999999999


Q ss_pred             CccchHHhhc----C-CCCCEEEccCccccCccchHhh----cC-CCCCCEEEccCCcCccc----ccccccccCCC-CC
Q 045099          137 NDSILSYLNT----L-TSLTTLILCDNSIEGSRTKQGL----AN-LRYLQVLDLSGNPITGR----FIARLGLSSLR-NL  201 (217)
Q Consensus       137 ~~~~p~~~~~----l-~~L~~L~l~~n~l~~~~p~~~~----~~-l~~L~~L~L~~n~l~~~----~p~~~~l~~l~-~L  201 (217)
                      ++..+..+..    + ++|++|++++|.+++..+. .+    .. .++|++|++++|.+++.    ++.  .+..++ +|
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--~l~~~~~~L  169 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ--ILAAIPANV  169 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH--HHHTSCTTC
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH--HHhcCCccc
Confidence            8777765444    4 8999999999999854332 33    33 36999999999999963    333  445565 99


Q ss_pred             CEEeccCCCCCCCC
Q 045099          202 KRLDLSNNYGFTTP  215 (217)
Q Consensus       202 ~~L~l~~N~l~~~p  215 (217)
                      ++|++++|++++..
T Consensus       170 ~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          170 NSLNLRGNNLASKN  183 (362)
T ss_dssp             CEEECTTSCGGGSC
T ss_pred             cEeeecCCCCchhh
Confidence            99999999987654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=5.8e-14  Score=105.89  Aligned_cols=136  Identities=25%  Similarity=0.314  Sum_probs=107.1

Q ss_pred             cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc
Q 045099           60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS  139 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  139 (217)
                      .++.++++.+.+.|..+.      +..++ ..+..+++|++|++++|.+++. |     .+..+++|++|++++|.++ .
T Consensus        19 ~l~~l~l~~~~l~~~~~~------l~~l~-~~~~~l~~L~~L~ls~n~l~~l-~-----~~~~l~~L~~L~l~~n~l~-~   84 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPP------IEKMD-ATLSTLKACKHLALSTNNIEKI-S-----SLSGMENLRILSLGRNLIK-K   84 (198)
T ss_dssp             CCCCTTCSEEECCBCCTT------CCCCH-HHHHHTTTCSEEECSEEEESCC-C-----CHHHHTTCCEEEEEEEEEC-S
T ss_pred             cccCcchheeEeccccCc------Hhhhh-HHHhcCCCCCEEECCCCCCccc-c-----ccccCCCCCEEECCCCCcc-c
Confidence            555666666666654322      11111 1466789999999999999983 3     5778999999999999998 5


Q ss_pred             chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc-ccccccCCCCCCEEeccCCCCCCC
Q 045099          140 ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI-ARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       140 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +|..+..+++|+.|++++|++++ +|  .+..+++|++|++++|.+++..+ .  .+..+++|++|++++|.+++.
T Consensus        85 l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~--~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           85 IENLDAVADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGEID--KLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHHHH--HHTTTTTCSEEEECSCHHHHH
T ss_pred             ccchhhcCCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhHHH--HHhcCCCCCEEEecCCccccc
Confidence            77777788999999999999985 55  47888999999999999997432 3  678899999999999987554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.27  E-value=1.3e-11  Score=108.16  Aligned_cols=107  Identities=22%  Similarity=0.169  Sum_probs=80.1

Q ss_pred             CCCccEEECCCCcCCCccCcchhhccc--------------CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccc
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSG--------------NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSI  160 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~--------------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  160 (217)
                      +++|+.|++++|.+++....  ...+.              .+++|++|++++|.+++ +|   ..+++|+.|++++|++
T Consensus       180 ~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L  253 (622)
T 3g06_A          180 PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRL  253 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred             CCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCC
Confidence            36677777777777663321  00111              23678888888888885 45   4568899999999999


Q ss_pred             cCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          161 EGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       161 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      + .+|.    .+++|++|++++|.++ .+|.  .+..+++|+.|+|++|++++.+
T Consensus       254 ~-~lp~----~~~~L~~L~Ls~N~L~-~lp~--~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          254 T-SLPM----LPSGLLSLSVYRNQLT-RLPE--SLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             S-CCCC----CCTTCCEEECCSSCCC-SCCG--GGGGSCTTCEEECCSCCCCHHH
T ss_pred             C-cCCc----ccccCcEEeCCCCCCC-cCCH--HHhhccccCEEEecCCCCCCcC
Confidence            8 4664    5688999999999999 5787  8899999999999999987643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=1.2e-12  Score=110.44  Aligned_cols=87  Identities=26%  Similarity=0.241  Sum_probs=55.2

Q ss_pred             CCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCccchHhhc-----CCCCCCEEEccCCcCcc----ccc
Q 045099          124 KQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGSRTKQGLA-----NLRYLQVLDLSGNPITG----RFI  190 (217)
Q Consensus       124 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----~l~~L~~L~L~~n~l~~----~~p  190 (217)
                      ++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+. .+.     ..++|++|++++|.+++    .++
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            4566666666665543    344555667777777777777643222 222     15677778887777775    566


Q ss_pred             ccccccCCCCCCEEeccCCCCCC
Q 045099          191 ARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       191 ~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                      .  .+..+++|++|++++|++++
T Consensus       392 ~--~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          392 A--TLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             H--HHHHCCCCCEEECCSSSCCH
T ss_pred             H--HHHhCCCccEEECCCCCCCH
Confidence            6  66677888888888887754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=1.5e-12  Score=109.81  Aligned_cols=143  Identities=23%  Similarity=0.152  Sum_probs=84.0

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..++.++++++.+...        ++..+....+..+++|++|++++|.++......+...+..+++|++|++++|.+++
T Consensus       227 ~~L~~L~Ls~n~l~~~--------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          227 ASLRELALGSNKLGDV--------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             TTCCEEECCSSBCHHH--------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             CCccEEeccCCcCChH--------HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence            4677788887766521        11111112233466777777777777664221122245567777777777777765


Q ss_pred             cchHHhhc-----CCCCCEEEccCccccCc----cchHhhcCCCCCCEEEccCCcCcccccccccccC-----CCCCCEE
Q 045099          139 SILSYLNT-----LTSLTTLILCDNSIEGS----RTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS-----LRNLKRL  204 (217)
Q Consensus       139 ~~p~~~~~-----l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~-----l~~L~~L  204 (217)
                      ..+..+..     .++|+.|++++|.+++.    ++. .+..+++|++|++++|.+++..+.  .+..     .++|++|
T Consensus       299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L  375 (461)
T 1z7x_W          299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGVR--ELCQGLGQPGSVLRVL  375 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHHH--HHHHHHTSTTCCCCEE
T ss_pred             HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccHH--HHHHHHcCCCCceEEE
Confidence            44444432     25777777777777643    232 455667777777777777764333  2221     5677777


Q ss_pred             eccCCCCC
Q 045099          205 DLSNNYGF  212 (217)
Q Consensus       205 ~l~~N~l~  212 (217)
                      ++++|+++
T Consensus       376 ~L~~n~i~  383 (461)
T 1z7x_W          376 WLADCDVS  383 (461)
T ss_dssp             ECTTSCCC
T ss_pred             ECCCCCCC
Confidence            77777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=99.18  E-value=1.1e-12  Score=103.22  Aligned_cols=160  Identities=21%  Similarity=0.200  Sum_probs=100.7

Q ss_pred             CCccccceEEcCCCCcEEEEecCC---ccccCCCCCCC-----------CCCCceeecCCCCCCCCCccE--EECCCCcC
Q 045099           45 DCCDWERLKCNATAGRVTELSLNR---LKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQS--LDLSENWF  108 (217)
Q Consensus        45 ~~c~w~gv~c~~~~~~v~~l~l~~---~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~--L~l~~n~l  108 (217)
                      ..|.|.|+.|+....+|+.+...+   ..+.+.+.++.           .......++++.+...+.|..  ++++.|..
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~  155 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR  155 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred             HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence            468899999987555665544433   23333332210           001112344555555555655  66666632


Q ss_pred             CCccCcchhhcccCCCCCCEEEccCCCCCc--cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCc
Q 045099          109 GGVSESKAYNSSGNLKQLKILNLGNNRLND--SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT  186 (217)
Q Consensus       109 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  186 (217)
                      ... +..+.-....+++|++|+|++|+|++  .+|..+..+++|+.|+|++|++++.-....+..+ +|+.|+|.+|.+.
T Consensus       156 ~~~-~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          156 SCM-AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HHH-HHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             HHH-HHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            211 11000022468899999999999997  4557778899999999999999864111123333 9999999999999


Q ss_pred             cccccc-----ccccCCCCCCEEec
Q 045099          187 GRFIAR-----LGLSSLRNLKRLDL  206 (217)
Q Consensus       187 ~~~p~~-----~~l~~l~~L~~L~l  206 (217)
                      +.+|..     ..+..+++|+.||-
T Consensus       234 ~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          234 DTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             cccCcchhHHHHHHHHCcccCeECC
Confidence            766521     14678999999873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=8.2e-12  Score=103.09  Aligned_cols=140  Identities=23%  Similarity=0.209  Sum_probs=96.2

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcc-cCCCCCCEEEccCCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSS-GNLKQLKILNLGNNRLN  137 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~  137 (217)
                      ..++.++++++.+...        +..    .....+++|++|++++|.++......+...+ ...++|++|+|++|.++
T Consensus       101 ~~L~~L~Ls~n~l~~~--------~~~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~  168 (372)
T 3un9_A          101 HALDEVNLASCQLDPA--------GLR----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT  168 (372)
T ss_dssp             SCEEEEECTTCCCCHH--------HHH----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCH
T ss_pred             CCceEEEecCCCCCHH--------HHH----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCC
Confidence            3667777777665411        000    0112345789999999988765544222233 34678999999999997


Q ss_pred             cc----chHHhhcCCCCCEEEccCccccCc----cchHhhcCCCCCCEEEccCCcCccc----ccccccccCCCCCCEEe
Q 045099          138 DS----ILSYLNTLTSLTTLILCDNSIEGS----RTKQGLANLRYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLD  205 (217)
Q Consensus       138 ~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~  205 (217)
                      +.    ++..+..+++|++|+|++|.+++.    +.. .+...++|+.|+|++|.+++.    +..  .+...++|++|+
T Consensus       169 ~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~--~L~~~~~L~~L~  245 (372)
T 3un9_A          169 AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALAR--AAREHPSLELLH  245 (372)
T ss_dssp             HHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHHHHH--HHHHCSSCCEEE
T ss_pred             hHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHHHHH--HHHhCCCCCEEe
Confidence            53    344457788999999999998742    122 466778999999999999863    333  455678999999


Q ss_pred             ccCCCCCC
Q 045099          206 LSNNYGFT  213 (217)
Q Consensus       206 l~~N~l~~  213 (217)
                      |++|.++.
T Consensus       246 Ls~N~i~~  253 (372)
T 3un9_A          246 LYFNELSS  253 (372)
T ss_dssp             CTTSSCCH
T ss_pred             ccCCCCCH
Confidence            99998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.04  E-value=1.8e-11  Score=101.12  Aligned_cols=141  Identities=18%  Similarity=0.172  Sum_probs=100.1

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..+..++++++.+...        ....+........++|++|++++|.++......   ....+++|++|+|++|.+++
T Consensus        72 ~~L~~L~Ls~n~l~~~--------~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~---l~~~L~~L~~L~Ls~n~l~~  140 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPV--------KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT---LLPVFLRARKLGLQLNSLGP  140 (372)
T ss_dssp             TTCCEEECTTSCCCHH--------HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHH---THHHHHTEEEEECCSSCCCH
T ss_pred             hhCCEEEecCCCCCHH--------HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHH---HHHHHHhccHhhcCCCCCCH
Confidence            4678899998887621        000010000123468999999999987654332   22345689999999999986


Q ss_pred             cchHHhh-----cCCCCCEEEccCccccCc----cchHhhcCCCCCCEEEccCCcCccc----ccccccccCCCCCCEEe
Q 045099          139 SILSYLN-----TLTSLTTLILCDNSIEGS----RTKQGLANLRYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLD  205 (217)
Q Consensus       139 ~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~  205 (217)
                      .....+.     ..++|+.|++++|.++..    ++. .+..+++|++|+|++|.+++.    ++.  .+...++|+.|+
T Consensus       141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~--~L~~~~~L~~L~  217 (372)
T 3un9_A          141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAA--QLDRNRQLQELN  217 (372)
T ss_dssp             HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHH--HGGGCSCCCEEE
T ss_pred             HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHH--HHhcCCCcCeEE
Confidence            6555442     468899999999999742    222 457789999999999999863    244  567788999999


Q ss_pred             ccCCCCCC
Q 045099          206 LSNNYGFT  213 (217)
Q Consensus       206 l~~N~l~~  213 (217)
                      |++|.++.
T Consensus       218 Ls~N~i~~  225 (372)
T 3un9_A          218 VAYNGAGD  225 (372)
T ss_dssp             CCSSCCCH
T ss_pred             CCCCCCCH
Confidence            99999864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.03  E-value=2e-10  Score=85.58  Aligned_cols=117  Identities=16%  Similarity=0.141  Sum_probs=90.0

Q ss_pred             CCCCCCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCCCCccc----hHHhhcCCCCCEEEccCccccCc---
Q 045099           92 FPPFQELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI----LSYLNTLTSLTTLILCDNSIEGS---  163 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~---  163 (217)
                      +...+.|++|+|++| .+.......+...+...++|++|+|++|.+.+..    ...+...++|++|+|++|.|+..   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456788999999999 8876544444446777889999999999998543    34455678999999999999742   


Q ss_pred             -cchHhhcCCCCCCEEEc--cCCcCccc----ccccccccCCCCCCEEeccCCCC
Q 045099          164 -RTKQGLANLRYLQVLDL--SGNPITGR----FIARLGLSSLRNLKRLDLSNNYG  211 (217)
Q Consensus       164 -~p~~~~~~l~~L~~L~L--~~n~l~~~----~p~~~~l~~l~~L~~L~l~~N~l  211 (217)
                       +. ..+...+.|++|+|  ++|.+++.    +..  .+...++|++|+|++|.+
T Consensus       112 ~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~--~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIAN--MLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHH--HHHHCSSCCEEECCCSSH
T ss_pred             HHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHH--HHHhCCCcCEEeccCCCC
Confidence             22 25667789999999  88999864    333  556678999999999976

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=1.3e-09  Score=88.27  Aligned_cols=89  Identities=15%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             CCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC-EEEccCCcCcccccccccccCCCCC
Q 045099          123 LKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ-VLDLSGNPITGRFIARLGLSSLRNL  201 (217)
Q Consensus       123 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~-~L~L~~n~l~~~~p~~~~l~~l~~L  201 (217)
                      +++|++++|++|.++......|..+.+|+.+++..| ++ .++...|..+.+|+ .+++.. .++...+.  .|..+++|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~--aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFG--AFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTT--TTTTCTTE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchh--hhhCCccC
Confidence            678999999998888655567888999999999887 66 57766889999999 999988 66654445  88899999


Q ss_pred             CEEeccCCCCCCCCC
Q 045099          202 KRLDLSNNYGFTTPS  216 (217)
Q Consensus       202 ~~L~l~~N~l~~~p~  216 (217)
                      +.++++.|+++.+++
T Consensus       300 ~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          300 RYVLATGDKITTLGD  314 (329)
T ss_dssp             EEEEECSSCCCEECT
T ss_pred             CEEEeCCCccCccch
Confidence            999999888877654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=1e-08  Score=82.94  Aligned_cols=103  Identities=19%  Similarity=0.082  Sum_probs=90.3

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCC-EEEccCccccCccchHhhcCCC
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT-TLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      +++|+.|++++|.++.....    .|..+.+|++|++.+| +....+..|.++.+|+ .+++.. .++ .++...|..++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCT
T ss_pred             cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCc
Confidence            78999999999999987776    8999999999999998 7765567899999999 999988 776 56666899999


Q ss_pred             CCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL  206 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l  206 (217)
                      +|+.+++..|.++...+.  .|..+++|+.++.
T Consensus       298 ~L~~l~l~~n~i~~I~~~--aF~~~~~L~~ly~  328 (329)
T 3sb4_A          298 NLRYVLATGDKITTLGDE--LFGNGVPSKLIYK  328 (329)
T ss_dssp             TEEEEEECSSCCCEECTT--TTCTTCCCCEEEC
T ss_pred             cCCEEEeCCCccCccchh--hhcCCcchhhhcc
Confidence            999999999999976555  8999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.83  E-value=1.7e-09  Score=93.74  Aligned_cols=93  Identities=19%  Similarity=0.135  Sum_probs=63.5

Q ss_pred             ccCCCCCCEEEccCC--CCCccchHHhhc-CCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc-ccccccc
Q 045099          120 SGNLKQLKILNLGNN--RLNDSILSYLNT-LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR-FIARLGL  195 (217)
Q Consensus       120 ~~~l~~L~~L~L~~n--~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~l  195 (217)
                      +..+++|++|+++.+  .+++..+..+.. +++|++|++++|++++......+..+++|++|++++|.+++. ++.  .+
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~  509 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA--AV  509 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH--HH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH--HH
Confidence            344666777777532  355555555443 778888888888887532222457788899999999888754 333  44


Q ss_pred             cCCCCCCEEeccCCCCCCC
Q 045099          196 SSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       196 ~~l~~L~~L~l~~N~l~~~  214 (217)
                      ..+++|++|++++|+++..
T Consensus       510 ~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHCSSCCEEEEESCBCCTT
T ss_pred             HhcCccCeeECcCCcCCHH
Confidence            6788899999999987754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.72  E-value=6.2e-09  Score=90.26  Aligned_cols=88  Identities=15%  Similarity=0.038  Sum_probs=52.6

Q ss_pred             CCCCCEEEcc----CCCCCcc-----chHHhhcCCCCCEEEccCc--cccCccchHhhcCCCCCCEEEccCCcCccc-cc
Q 045099          123 LKQLKILNLG----NNRLNDS-----ILSYLNTLTSLTTLILCDN--SIEGSRTKQGLANLRYLQVLDLSGNPITGR-FI  190 (217)
Q Consensus       123 l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p  190 (217)
                      +++|++|+++    .|.+++.     ++..+..+++|+.|+++.|  .+++..+......+++|++|++++|.+++. ++
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence            4555555553    4445432     3333445566666666532  244333332233477888888888888763 44


Q ss_pred             ccccccCCCCCCEEeccCCCCC
Q 045099          191 ARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       191 ~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      .  .+..+++|++|++++|.++
T Consensus       482 ~--~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          482 E--FSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             H--HHTCCTTCCEEEEESCCCB
T ss_pred             H--HHhcCcccCeeeccCCCCc
Confidence            4  5577888999999998864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.65  E-value=4.8e-08  Score=76.75  Aligned_cols=82  Identities=30%  Similarity=0.283  Sum_probs=65.1

Q ss_pred             CCCCCccEEECCCCcCCCcc--CcchhhcccCCCCCCEEEccCCCCCccchHHhhcCC--CCCEEEccCccccCccch--
Q 045099           93 PPFQELQSLDLSENWFGGVS--ESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLT--SLTTLILCDNSIEGSRTK--  166 (217)
Q Consensus        93 ~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p~--  166 (217)
                      ..+++|+.|+|++|.+++..  +.    .+..+++|+.|+|++|.|++.  ..+..+.  +|++|+|++|.+.+.+|.  
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~  240 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS  240 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch
Confidence            35789999999999999954  33    567899999999999999975  3334444  999999999999876652  


Q ss_pred             ----HhhcCCCCCCEEEc
Q 045099          167 ----QGLANLRYLQVLDL  180 (217)
Q Consensus       167 ----~~~~~l~~L~~L~L  180 (217)
                          ..+..+++|+.||-
T Consensus       241 ~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHHCTTCCEESS
T ss_pred             hHHHHHHHHCcccCeECC
Confidence                24678899998873

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.58  E-value=2.9e-08  Score=86.03  Aligned_cols=90  Identities=19%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             ccCCCCCCEEEccCCCCCccchHHhhc-CCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099          120 SGNLKQLKILNLGNNRLNDSILSYLNT-LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL  198 (217)
Q Consensus       120 ~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l  198 (217)
                      +..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.........+++|++|++++|.+++..... .+..+
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~-~~~~l  505 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA-NASKL  505 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH-TGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH-HHHhC
Confidence            44566777777766 666555555554 7788888888888765433322256788888888888886543321 33457


Q ss_pred             CCCCEEeccCCCC
Q 045099          199 RNLKRLDLSNNYG  211 (217)
Q Consensus       199 ~~L~~L~l~~N~l  211 (217)
                      ++|+.|++++|++
T Consensus       506 ~~L~~L~l~~~~~  518 (594)
T 2p1m_B          506 ETMRSLWMSSCSV  518 (594)
T ss_dssp             GGSSEEEEESSCC
T ss_pred             CCCCEEeeeCCCC
Confidence            7888888888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.57  E-value=1.2e-08  Score=75.82  Aligned_cols=121  Identities=13%  Similarity=0.048  Sum_probs=87.6

Q ss_pred             CCcEEEEecCCc-cccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCC
Q 045099           58 AGRVTELSLNRL-KHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRL  136 (217)
Q Consensus        58 ~~~v~~l~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l  136 (217)
                      ...++.++++++ .+...        +...+ ...+...+.|++|+|++|.+.......+...+...++|++|+|++|.|
T Consensus        35 ~~~L~~L~L~~n~~i~~~--------g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVP--------TLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             CTTCCEEECTTCTTCCHH--------HHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             CCCCCEEEecCCCCCCHH--------HHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            457889999988 76521        11111 123456788999999999998754443444566778999999999999


Q ss_pred             Ccc----chHHhhcCCCCCEEEc--cCccccCccc---hHhhcCCCCCCEEEccCCcCcc
Q 045099          137 NDS----ILSYLNTLTSLTTLIL--CDNSIEGSRT---KQGLANLRYLQVLDLSGNPITG  187 (217)
Q Consensus       137 ~~~----~p~~~~~l~~L~~L~l--~~n~l~~~~p---~~~~~~l~~L~~L~L~~n~l~~  187 (217)
                      .+.    +...+...++|++|++  ++|.++....   ...+...++|++|++++|.+..
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            865    3455667789999999  8899974311   1245667899999999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.41  E-value=7e-08  Score=83.62  Aligned_cols=86  Identities=10%  Similarity=0.067  Sum_probs=51.9

Q ss_pred             CCCCCEEEcc--C----CCCCc-----cchHHhhcCCCCCEEEccCccccCccchHhhcC-CCCCCEEEccCCcCccccc
Q 045099          123 LKQLKILNLG--N----NRLND-----SILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN-LRYLQVLDLSGNPITGRFI  190 (217)
Q Consensus       123 l~~L~~L~L~--~----n~l~~-----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~-l~~L~~L~L~~n~l~~~~p  190 (217)
                      +++|++|+++  +    +.+++     .++..+..+++|+.|++++ .+++.... .+.. +++|++|++++|.+++..+
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~-~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE-YIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH-HHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH-HHHHhchhccEeeccCCCCcHHHH
Confidence            5566666666  2    34441     1222344556666666655 44433222 2333 7788888888888876544


Q ss_pred             ccccc-cCCCCCCEEeccCCCCC
Q 045099          191 ARLGL-SSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       191 ~~~~l-~~l~~L~~L~l~~N~l~  212 (217)
                      .  .+ ..+++|+.|++++|.++
T Consensus       474 ~--~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          474 H--HVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             H--HHHHHCTTCCEEEEESCSCC
T ss_pred             H--HHHhcCCCcCEEECcCCCCc
Confidence            3  33 56888999999988874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.41  E-value=1.9e-07  Score=68.57  Aligned_cols=87  Identities=18%  Similarity=0.280  Sum_probs=68.5

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCC-CCccchHHhhcC----CCCCEEEccCcc-ccCccchHhh
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNR-LNDSILSYLNTL----TSLTTLILCDNS-IEGSRTKQGL  169 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~~~  169 (217)
                      ..|++||++++.++...-.    .+..+++|++|+|+++. +++.....+..+    ++|++|++++|. ++..-- ..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IAL  135 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHG
T ss_pred             ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHH
Confidence            4689999999988765544    67889999999999985 887777777765    479999999985 774322 257


Q ss_pred             cCCCCCCEEEccCCc-Ccc
Q 045099          170 ANLRYLQVLDLSGNP-ITG  187 (217)
Q Consensus       170 ~~l~~L~~L~L~~n~-l~~  187 (217)
                      ..+++|++|+++++. +++
T Consensus       136 ~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCEEECCCCCCCCc
Confidence            789999999999986 664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.41  E-value=1.7e-06  Score=72.00  Aligned_cols=122  Identities=13%  Similarity=0.097  Sum_probs=80.0

Q ss_pred             ceeecCCCCCCCCCccEEECCCC---------------------cCCCccCcchhhcccCCCCCCEEEccCCCCC-----
Q 045099           84 VIILDLSLFPPFQELQSLDLSEN---------------------WFGGVSESKAYNSSGNLKQLKILNLGNNRLN-----  137 (217)
Q Consensus        84 ~~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----  137 (217)
                      +..+....|..+.+|+.+++..+                     .++.....    .|..+++|+.+.+.+|.+.     
T Consensus       214 l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~~~~~~  289 (401)
T 4fdw_A          214 LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFNDDPEA  289 (401)
T ss_dssp             CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCCCCTTC
T ss_pred             hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCccccCCccc
Confidence            44455566777777777777653                     12222222    5667778888888777654     


Q ss_pred             ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ......|..+++|+.+.+. +.++ .++...|..+.+|+.+.+..| ++..-..  .|..+ +|+.+++.+|.+..++
T Consensus       290 ~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~--aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFS--AFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             EECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT-CCEECTT--SSSSS-CCCEEEECCSSCCBCC
T ss_pred             EECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc-ccEEcHH--hCCCC-CCCEEEEcCCCCcccc
Confidence            2334567778888888887 4465 455567888888888888554 5543334  77778 8999999888765543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.29  E-value=3.4e-07  Score=67.23  Aligned_cols=84  Identities=20%  Similarity=0.277  Sum_probs=67.8

Q ss_pred             CCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcc-ccCccchHhhcCC----CCCCEEEccCCc-CcccccccccccC
Q 045099          124 KQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNS-IEGSRTKQGLANL----RYLQVLDLSGNP-ITGRFIARLGLSS  197 (217)
Q Consensus       124 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~l~~  197 (217)
                      .+|+.||++++.+++.....+..+++|+.|+|++|. +++.-- ..+..+    ++|++|+|++|. +|+.--.  .+..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~--~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGII--ALHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHH--HGGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHH--HHhc
Confidence            469999999999998777788899999999999995 764322 245554    479999999985 8876444  6778


Q ss_pred             CCCCCEEeccCCC
Q 045099          198 LRNLKRLDLSNNY  210 (217)
Q Consensus       198 l~~L~~L~l~~N~  210 (217)
                      +++|++|++++..
T Consensus       138 ~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 FRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCEEEEESCT
T ss_pred             CCCCCEEECCCCC
Confidence            9999999999864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.25  E-value=3.3e-07  Score=75.23  Aligned_cols=63  Identities=19%  Similarity=0.293  Sum_probs=34.8

Q ss_pred             CCCCCEEEccCccccCccchHhh---cCCCCCCEEEccCCcCccc----ccccccccCCCCCCEEeccCCCCC
Q 045099          147 LTSLTTLILCDNSIEGSRTKQGL---ANLRYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       147 l~~L~~L~l~~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      +++|+.|++.+|.+++..+. .+   ..+++|++|+|+.|.+++.    ++.  .+..+++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~--~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLD--HVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHT--THHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHh--hcccCCcceEEECCCCcCC
Confidence            56666666666666532222 12   1355667777766666652    222  3344566777777666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.22  E-value=1.7e-06  Score=70.94  Aligned_cols=111  Identities=16%  Similarity=0.119  Sum_probs=77.0

Q ss_pred             CCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhh--cCCCCCEEEccC--ccccCc-----
Q 045099           93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN--TLTSLTTLILCD--NSIEGS-----  163 (217)
Q Consensus        93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~--n~l~~~-----  163 (217)
                      ..+++|+.|.+++|.-.. .+     .+ .+++|++|+|..+.+.......+.  .+++|+.|+|+.  |...+.     
T Consensus       169 ~~~P~L~~L~L~g~~~l~-l~-----~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLS-IG-----KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HTCTTCCEEEEECCBTCB-CC-----SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             hcCCCCcEEEEeCCCCce-ec-----cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            457899999998773111 12     23 378999999999988765555554  789999999863  222211     


Q ss_pred             cchHhh--cCCCCCCEEEccCCcCcccccccccc---cCCCCCCEEeccCCCCCC
Q 045099          164 RTKQGL--ANLRYLQVLDLSGNPITGRFIARLGL---SSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       164 ~p~~~~--~~l~~L~~L~L~~n~l~~~~p~~~~l---~~l~~L~~L~l~~N~l~~  213 (217)
                      +.. .+  ..+++|++|+|.+|.+++..+.  .+   ..+++|++|+|+.|.+.+
T Consensus       242 l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~--~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          242 FRP-LFSKDRFPNLKWLGIVDAEEQNVVVE--MFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TGG-GSCTTTCTTCCEEEEESCTTHHHHHH--HHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHH-HHhcCCCCCcCEEeCCCCCCchHHHH--HHHhCccCCCCCEEECCCCCCCh
Confidence            111 12  3578999999999998864433  22   357899999999998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.18  E-value=9.7e-06  Score=67.34  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=62.5

Q ss_pred             ceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCc-----
Q 045099           84 VIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN-----  158 (217)
Q Consensus        84 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-----  158 (217)
                      +..+....|..+.+|+.+++..|.++.....    .|. ..+|+.+.+..+ +.......|..+++|+.+++..+     
T Consensus       168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~  241 (401)
T 4fdw_A          168 LEQLKEDIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIG  241 (401)
T ss_dssp             CCEECSSTTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEEC
T ss_pred             ccEehHHHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcc
Confidence            3345555677777888888877766655443    333 244555555422 33222334444555555555432     


Q ss_pred             ----------------cccCccchHhhcCCCCCCEEEccCCcCc-----ccccccccccCCCCCCEEecc
Q 045099          159 ----------------SIEGSRTKQGLANLRYLQVLDLSGNPIT-----GRFIARLGLSSLRNLKRLDLS  207 (217)
Q Consensus       159 ----------------~l~~~~p~~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~l~~l~~L~~L~l~  207 (217)
                                      .++ .++...|..+++|+.+.+.+|.+.     .....  .+..+++|+.+.+.
T Consensus       242 ~~aF~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          242 QEAFRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIP  308 (401)
T ss_dssp             TTTTTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCC
T ss_pred             ccccccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeC
Confidence                            232 243445666777777777666544     11222  56667777777776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.08  E-value=6.2e-06  Score=61.63  Aligned_cols=116  Identities=13%  Similarity=0.151  Sum_probs=81.1

Q ss_pred             CCCCCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCCCCccc----hHHhhcCCCCCEEEccCccccCccch-
Q 045099           93 PPFQELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI----LSYLNTLTSLTTLILCDNSIEGSRTK-  166 (217)
Q Consensus        93 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p~-  166 (217)
                      ..-+.|++|+|++| .+....-..++..+..-+.|+.|+|++|.+.+..    ...+..-++|+.|+|+.|.|+..--. 
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45678999999985 7765433334456777889999999999997543    33445668899999999999742111 


Q ss_pred             --HhhcCCCCCCEEEccCC---cCcc----cccccccccCCCCCCEEeccCCC
Q 045099          167 --QGLANLRYLQVLDLSGN---PITG----RFIARLGLSSLRNLKRLDLSNNY  210 (217)
Q Consensus       167 --~~~~~l~~L~~L~L~~n---~l~~----~~p~~~~l~~l~~L~~L~l~~N~  210 (217)
                        ..+..-..|+.|+|++|   .+..    .+..  .+..-+.|+.|+++.|.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~--aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH--HHHhCCCcCeEeccCCC
Confidence              24556678999999865   3343    2333  55667889999998764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.73  E-value=0.00034  Score=57.64  Aligned_cols=115  Identities=15%  Similarity=0.204  Sum_probs=67.1

Q ss_pred             ceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCc
Q 045099           84 VIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGS  163 (217)
Q Consensus        84 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  163 (217)
                      +..+....|..+..|+.+.+..+.. .....    .|..++.|+.+.+. +.++......|..+.+|+.+.+..+ ++ .
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~----aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~  324 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVV-SIGTG----AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-Q  324 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCC-EECTT----TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-E
T ss_pred             ceEcccceeeecccccEEecccccc-eecCc----ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-E
Confidence            3444455677777888887765432 22222    55666777777765 3344333345666777777777643 43 3


Q ss_pred             cchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099          164 RTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       164 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N  209 (217)
                      +....|..+.+|+.+.+..+ ++..-..  .|.++++|+.+++.++
T Consensus       325 I~~~aF~~C~~L~~i~ip~s-v~~I~~~--aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          325 ILDDAFAGCEQLERIAIPSS-VTKIPES--AFSNCTALNNIEYSGS  367 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT-CCBCCGG--GGTTCTTCCEEEESSC
T ss_pred             ehHhHhhCCCCCCEEEECcc-cCEEhHh--HhhCCCCCCEEEECCc
Confidence            44446777777777777543 4432222  6667777777776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.66  E-value=0.00024  Score=58.09  Aligned_cols=112  Identities=13%  Similarity=0.180  Sum_probs=71.7

Q ss_pred             cCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchH
Q 045099           88 DLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQ  167 (217)
Q Consensus        88 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~  167 (217)
                      ....+..+..|+.+.+..+ ++.....    .|..+..|+.+.+..+ +.......|..+.+|+.+.+..+.++ .++..
T Consensus       232 ~~~~f~~~~~L~~i~lp~~-v~~I~~~----aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~  304 (379)
T 4h09_A          232 GDGAFYGMKALDEIAIPKN-VTSIGSF----LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPR  304 (379)
T ss_dssp             CTTTTTTCSSCCEEEECTT-CCEECTT----TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTT
T ss_pred             ccccccCCccceEEEcCCC-ccEeCcc----ccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhh
Confidence            3345556667777776554 4433333    5667777777777543 44333446677888888888877776 46555


Q ss_pred             hhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099          168 GLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       168 ~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N  209 (217)
                      .|..+.+|+.+.+..+ ++..-..  .+.++++|+.+.+..+
T Consensus       305 aF~~c~~L~~i~lp~~-l~~I~~~--aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          305 VFMDCVKLSSVTLPTA-LKTIQVY--AFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTT--TTTTCTTCCCCCCCTT
T ss_pred             hhcCCCCCCEEEcCcc-ccEEHHH--HhhCCCCCCEEEECCc
Confidence            7888888888888654 4432223  6777788887777543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.57  E-value=0.00038  Score=57.33  Aligned_cols=113  Identities=14%  Similarity=0.184  Sum_probs=79.2

Q ss_pred             eecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccc
Q 045099           86 ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT  165 (217)
Q Consensus        86 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  165 (217)
                      .+....|..+..|+.+.+. +.++.....    .|.++.+|+.+.|..+ ++......|.++.+|+.+.+..+ ++ .+.
T Consensus       278 ~I~~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~  349 (394)
T 4gt6_A          278 SIGTGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIP  349 (394)
T ss_dssp             EECTTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCC
T ss_pred             eecCcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEh
Confidence            4455678889999999996 445555554    7889999999999865 55444567889999999999755 65 466


Q ss_pred             hHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCC
Q 045099          166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYG  211 (217)
Q Consensus       166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l  211 (217)
                      ...|.++.+|+.+++.++....   .  .+..+..|+.+.+..|.+
T Consensus       350 ~~aF~~C~~L~~i~~~~~~~~~---~--~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGSRSQW---N--AISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GGGGTTCTTCCEEEESSCHHHH---H--TCBCCCCC----------
T ss_pred             HhHhhCCCCCCEEEECCceeeh---h--hhhccCCCCEEEeCCCCE
Confidence            6789999999999999876442   2  566788899988877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.48  E-value=0.00028  Score=52.61  Aligned_cols=88  Identities=16%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             cccCCCCCCEEEccCC-CCCcc----chHHhhcCCCCCEEEccCccccCc----cchHhhcCCCCCCEEEccCCcCccc-
Q 045099          119 SSGNLKQLKILNLGNN-RLNDS----ILSYLNTLTSLTTLILCDNSIEGS----RTKQGLANLRYLQVLDLSGNPITGR-  188 (217)
Q Consensus       119 ~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~-  188 (217)
                      .+..-+.|++|+|++| .+.+.    +-..+..-.+|+.|+|++|.+...    +.. .+..-+.|++|+|+.|.+.+. 
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-HHhcCCccCeEecCCCcCCHHH
Confidence            4566789999999985 88753    334566678999999999999732    222 456678999999999999963 


Q ss_pred             ---ccccccccCCCCCCEEeccCC
Q 045099          189 ---FIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       189 ---~p~~~~l~~l~~L~~L~l~~N  209 (217)
                         +.+  .+..-+.|++|+|++|
T Consensus       115 a~ala~--aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          115 LARLLR--STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHH--HTTTTCCCSEEECCCC
T ss_pred             HHHHHH--HHhhCCceeEEECCCC
Confidence               333  5566678999999865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.28  E-value=0.0014  Score=53.85  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=58.8

Q ss_pred             cccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099          119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL  198 (217)
Q Consensus       119 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l  198 (217)
                      .|..+.+|+.+.+..+ +.......|..+.+|+.+++..+ ++ .+....|..+.+|+.+.+..+ ++..-..  .+..+
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~--aF~~C  365 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGAN--AFQGC  365 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTT--TBTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHH--HhhCC
Confidence            4556777888877654 54333456778888888888644 55 455557888888888888766 5543333  77888


Q ss_pred             CCCCEEeccCC
Q 045099          199 RNLKRLDLSNN  209 (217)
Q Consensus       199 ~~L~~L~l~~N  209 (217)
                      ++|+.+++..+
T Consensus       366 ~~L~~i~lp~~  376 (394)
T 4fs7_A          366 INLKKVELPKR  376 (394)
T ss_dssp             TTCCEEEEEGG
T ss_pred             CCCCEEEECCC
Confidence            88888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.09  E-value=0.001  Score=54.75  Aligned_cols=103  Identities=12%  Similarity=0.118  Sum_probs=76.0

Q ss_pred             CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099           90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL  169 (217)
Q Consensus        90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~  169 (217)
                      ..+..+..|+.+.+..+ ++.....    .|..+.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++ .+....|
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF  362 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAF  362 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTB
T ss_pred             ccccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHh
Confidence            45667778888888654 5444444    7888999999999754 66444568889999999999877 65 4666689


Q ss_pred             cCCCCCCEEEccCCcCcccccccccccCCCCCCEE
Q 045099          170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL  204 (217)
Q Consensus       170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L  204 (217)
                      ..+.+|+.+++..+ ++. +..  .+.++++|+.+
T Consensus       363 ~~C~~L~~i~lp~~-~~~-~~~--~F~~c~~L~~I  393 (394)
T 4fs7_A          363 QGCINLKKVELPKR-LEQ-YRY--DFEDTTKFKWI  393 (394)
T ss_dssp             TTCTTCCEEEEEGG-GGG-GGG--GBCTTCEEEEE
T ss_pred             hCCCCCCEEEECCC-CEE-hhh--eecCCCCCcEE
Confidence            99999999999754 332 333  67788877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.02  E-value=0.0017  Score=45.02  Aligned_cols=57  Identities=23%  Similarity=0.314  Sum_probs=43.8

Q ss_pred             CEEEccCCCCC-ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCc
Q 045099          127 KILNLGNNRLN-DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT  186 (217)
Q Consensus       127 ~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  186 (217)
                      ..++-+++.++ ..+|..+  -.+|+.|+|++|+|+ .++...|..+++|++|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            47788888886 2455432  246899999999998 477667888999999999999876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.00  E-value=0.0085  Score=48.76  Aligned_cols=111  Identities=13%  Similarity=0.085  Sum_probs=81.7

Q ss_pred             CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHh
Q 045099           89 LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG  168 (217)
Q Consensus        89 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~  168 (217)
                      ...+..+..|+.+.+..+ +......    .+..+..|+.+.+..+ ++......+..+.+|+.+.+..+ ++ .++...
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~----~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~a  281 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDG----AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLL  281 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTT----TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTT
T ss_pred             ecccccccccceeeeccc-eeEEccc----cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccc
Confidence            345566777888887654 3333333    6778889999998776 55444567788899999999654 44 455567


Q ss_pred             hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099          169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N  209 (217)
                      +..+.+|+.+.+.++.++..-..  .+.++.+|+.+.|..+
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~--aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPR--VFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTT--TTTTCTTCCEEECCTT
T ss_pred             cccccccccccccccccceehhh--hhcCCCCCCEEEcCcc
Confidence            89999999999998888854344  8889999999999654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.88  E-value=0.0027  Score=43.95  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=22.1

Q ss_pred             CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099           97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN  137 (217)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  137 (217)
                      +|++|+|++|.|+...+.    .|..+++|++|+|.+|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPG----LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChh----hhhhccccCEEEecCCCee
Confidence            456666666666665554    5555666666666666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 87  LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNT 146
           L  +       L  L    N     ++ +  +   NLK L  L L  N ++D  +S +++
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSS 327

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
           LT L  L   +N +        LANL  +  L    N I+        L++L  + +L L
Sbjct: 328 LTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQISD----LTPLANLTRITQLGL 380

Query: 207 SNN 209
           ++ 
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
            L +     LG   + D++      L  +TTL      I+   +  G+  L  L  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 74

Query: 182 GNPITGRFIARLGLSSLRNLKRLDLSNNY 210
            N +T        L +L  L  + ++NN 
Sbjct: 75  NNQLTD----ITPLKNLTKLVDILMNNNQ 99

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 2e-08
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 126 LKILNLGNNRLNDSILSYL-NTLTSLTTLILCDNSIEGSRTK---QGLANLRYLQVLDLS 181
           ++ L++    L+D+  + L   L     + L D  +  +R K     L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 182 GNPITG---RFIARLGLSSLRNLKRLDLSNNY 210
            N +       + +   +    +++L L N  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-07
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG--LSSLRNLKRLDL 206
            + +L +    +  +R  + L  L+  QV+ L    +T      +   L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 207 SNN 209
            +N
Sbjct: 63  RSN 65

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 7e-06
 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 71  HYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILN 130
             + SN      GV  L   L  P   L+ L L++      S S    +      L+ L+
Sbjct: 344 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 403

Query: 131 LGNNRLNDSILSYL-----NTLTSLTTLILCDNSIEG 162
           L NN L D+ +  L          L  L+L D     
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-05
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 142 SYLNTLTSLTTLILCDNSIEGSRTK---QGLANLRYLQVLDLSGNPITGRFIARLGLS-- 196
                 + L  L L D  +  S        L     L+ LDLS N +    I +L  S  
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 197 -SLRNLKRLDLSNNY 210
                L++L L + Y
Sbjct: 423 QPGCLLEQLVLYDIY 437

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-05
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 122 NLKQLKILNLGNNRLND----SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR---- 173
               L++L L +  ++D    S+ + L    SL  L L +N +  +   Q + ++R    
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 174 YLQVLDLSGNPITGRFIARL 193
            L+ L L     +     RL
Sbjct: 427 LLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-05
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 90  SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL----- 144
            L P  Q+ Q + L +            ++      L  LNL +N L D  +  +     
Sbjct: 21  ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80

Query: 145 NTLTSLTTLILCDN 158
                +  L L + 
Sbjct: 81  TPSCKIQKLSLQNC 94

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 8e-06
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 86  ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN 145
           +  L        +  LDLS N            +   L+ L++L    +      +  + 
Sbjct: 10  LTVLCHLEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQ--ASDNALENVDGVA 62

Query: 146 TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS-LRNLKRL 204
            L  L  L+LC+N ++ S   Q L +   L +L+L GN +      +  L+  L ++  +
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
              +    NL    + D++    N L S+  +I  ++ I+     QG+  L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLN 76

Query: 182 GNPITGRF 189
           GN +T   
Sbjct: 77  GNKLTDIK 84

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
           LA L  LQ L LS N I+        L+ L+NL  L+L +
Sbjct: 174 LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 147 LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206
                   L   S+  + T+  L ++  +     + + I        G+  L N+ +L L
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNSIDQI---IANNSDIKSVQ----GIQYLPNVTKLFL 75

Query: 207 SNN 209
           + N
Sbjct: 76  NGN 78

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 9/153 (5%)

Query: 61  VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNS- 119
           + EL   +++  K             LDL       +L + ++        S +      
Sbjct: 1   LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRII 60

Query: 120 SGNLKQLKILNLGNNRLND--SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQV 177
             N+ +L  LNL NNRL     + S +    +L  L L  N ++ S  +        L+ 
Sbjct: 61  EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEE 119

Query: 178 LDLSGNPITGRFIARLG-----LSSLRNLKRLD 205
           L L GN ++  F  +             L RLD
Sbjct: 120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 125 QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184
             + L+L   R +D  L   N    L        ++          N+  L  L+LS N 
Sbjct: 23  SQQALDLKGLR-SDPDLVAQNIDVVLNRRSSMAATLRII-----EENIPELLSLNLSNNR 76

Query: 185 ITGRFIARLGLSSLRNLKRLDLSNNY 210
           +         +    NLK L+LS N 
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNE 102

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 137 NDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLS 196
             S L+ L  L+ LTTL   DN I        LA+L  L  + L  N I+        L+
Sbjct: 162 QVSDLTPLANLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISD----VSPLA 214

Query: 197 SLRNLKRLDLSN 208
           +  NL  + L+N
Sbjct: 215 NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
            L     +  G + + D++      L  +TTL      +    T +G+  L  L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 182 GNPI 185
            N I
Sbjct: 72  DNQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 121 GNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDL 180
            NL +L  L   +N+++D  +S L +L +L  + L +N I        LAN   L ++ L
Sbjct: 170 ANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTL 224

Query: 181 S 181
           +
Sbjct: 225 T 225

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 7e-05
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 130 NLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184
           +L NNR+  ++   L  L  L +L +  N++ G   +    NL+   V   + N 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214
           L +N I G+   QGL  L++L  L++S N + G         +L+       +NN     
Sbjct: 251 LRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCLCG 306

Query: 215 P 215
            
Sbjct: 307 S 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 13/65 (20%)

Query: 7  CLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCD--WERLKCNA--TAGRVT 62
          C  +++  LL+IK+   +          L+SW+    +DCC+  W  + C+      RV 
Sbjct: 3  CNPQDKQALLQIKKDLGN-------PTTLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVN 53

Query: 63 ELSLN 67
           L L+
Sbjct: 54 NLDLS 58

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 95  FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLI 154
              L  L L  N    V       S   L  L  L L  N ++      L     L  L 
Sbjct: 170 PPSLTELHLDGNKITKVDA----ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT----GRFIARLGLSSLRNLKRLDLSNN 209
           L +N +   +   GLA+ +Y+QV+ L  N I+      F      +   +   + L +N
Sbjct: 226 LNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 24/132 (18%)

Query: 98  LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157
              LDL  N    + +        NLK L  L L NN+++         L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 158 NSIEG--------------------SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS 197
           N ++                        K     L  + V++L  NP+    I       
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 198 LRNLKRLDLSNN 209
           ++ L  + +++ 
Sbjct: 149 MKKLSYIRIADT 160

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 4e-04
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
            DN+                 +LD+S   I    +   GL +L+ L+     N 
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHS--LPSYGLENLKKLRARSTYNL 235

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 106 NWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT 165
            ++   S ++  +       L+ LN+ NN+L             L  LI   N +  +  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHL--AEV 319

Query: 166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208
            +   NL+ L    +  NP+              +++ L +++
Sbjct: 320 PELPQNLKQL---HVEYNPLREF------PDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 130 NLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRF 189
               N  ++ I S  +   SL  L + +N +      +  A    L+ L  S N +    
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAEVP 320

Query: 190 IARLGLSSLRNLKRLDLSNN 209
                    +NLK+L +  N
Sbjct: 321 ------ELPQNLKQLHVEYN 334

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181
            L +     LG   + D++      L  +TTL      I   ++  G+  L  L  ++ S
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFS 70

Query: 182 GNPITGRF 189
            N +T   
Sbjct: 71  NNQLTDIT 78

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 124 KQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK---QGLANLRYLQVLDL 180
           K LK+  +       S+ + L    S+  ++L  N+I     +   + +A+ + L++ + 
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 181 SGNPI 185
           S    
Sbjct: 67  SDIFT 71

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 167 QGLANLRYLQVLDLSGNPITGRFIARLG--LSSLRNLKRLDLSNNYGFTTPSQ 217
             L     ++ + LSGN I       L   ++S ++L+  + S+ +      +
Sbjct: 25  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDE 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.42
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.41
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.24
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.2
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.04
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.84
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.55
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=3.9e-30  Score=206.22  Aligned_cols=184  Identities=24%  Similarity=0.394  Sum_probs=161.1

Q ss_pred             CCCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCc--cccceEEcCCC--CcEEEEecCCccccCCCCCCCCC
Q 045099            6 GCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCC--DWERLKCNATA--GRVTELSLNRLKHYKSSNPNNSS   81 (217)
Q Consensus         6 ~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c--~w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~   81 (217)
                      -|++.|++||++||+++.++.       .+.+|..  +.+||  .|.||+|+...  .||++++|+++.+.|.       
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-------~l~sW~~--~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~-------   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP-------   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-------GGTTCCT--TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC-------
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-------cCCCCCC--CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCC-------
Confidence            399999999999999998765       6899986  56899  49999998643  4899999999998843       


Q ss_pred             CCceeecCCCCCCCCCccEEECCC-CcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccc
Q 045099           82 DGVIILDLSLFPPFQELQSLDLSE-NWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSI  160 (217)
Q Consensus        82 ~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  160 (217)
                         ..+ ++.++.+++|++|++++ |.++|.+|.    .|.++++|++|+|++|++.+..+..+..+.+|+.++++.|.+
T Consensus        66 ---~~l-p~~l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~  137 (313)
T d1ogqa_          66 ---YPI-PSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             ---EEC-CGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             ---CCC-ChHHhcCcccccccccccccccccccc----ccccccccchhhhccccccccccccccchhhhcccccccccc
Confidence               112 34688999999999986 899998887    899999999999999999998888899999999999999999


Q ss_pred             cCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCC-CEEeccCCCCCCCCC
Q 045099          161 EGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNL-KRLDLSNNYGFTTPS  216 (217)
Q Consensus       161 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L-~~L~l~~N~l~~~p~  216 (217)
                      .+.+|. .+..++.++++++++|.+++.+|.  .+..+..+ +.++++.|++++.++
T Consensus       138 ~~~~p~-~l~~l~~L~~l~l~~n~l~~~ip~--~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         138 SGTLPP-SISSLPNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             ESCCCG-GGGGCTTCCEEECCSSCCEEECCG--GGGCCCTTCCEEECCSSEEEEECC
T ss_pred             cccCch-hhccCcccceeecccccccccccc--cccccccccccccccccccccccc
Confidence            988887 799999999999999999999998  78888776 899999999887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=1.4e-17  Score=123.66  Aligned_cols=113  Identities=24%  Similarity=0.268  Sum_probs=96.5

Q ss_pred             CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099           96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL  175 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  175 (217)
                      +++++|+|++|.|+..++..   .|..+++|++|++++|.+....+..+..+++|++|++++|+++. +++..|.++++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~-l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTC
T ss_pred             CCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccccccccccccccccceeeeccccccc-cCHHHHhCCCcc
Confidence            57899999999998755332   67889999999999999998888888899999999999999984 555578899999


Q ss_pred             CEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       176 ~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      ++|+|++|++++..+.  .+..+++|++|+|++|.+...
T Consensus       105 ~~L~L~~N~l~~i~~~--~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         105 KTLNLYDNQISCVMPG--SFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CEEECCSSCCCEECTT--SSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccCCccccccCHH--HhcCCcccccccccccccccc
Confidence            9999999999986666  788899999999999988654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.5e-16  Score=120.48  Aligned_cols=117  Identities=29%  Similarity=0.283  Sum_probs=73.2

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|+++...+     .+..+++|++|++++|.+....+..+..+.+++.|++++|.++. ++...+..
T Consensus        73 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~-l~~~~~~~  146 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHNQLQSLPL-----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTP  146 (266)
T ss_dssp             CSCCTTCCEEECCSSCCSSCCC-----CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTT
T ss_pred             cccccccccccccccccccccc-----ccccccccccccccccccceeeccccccccccccccccccccce-eccccccc
Confidence            3456666666666666655433     45556666666666666654444455555666666666666653 44435566


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ++.++.+++++|++++..+.  .+..+++|++|+|++|+|+.+|+
T Consensus       147 l~~l~~l~l~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~L~~lp~  189 (266)
T d1p9ag_         147 TPKLEKLSLANNNLTELPAG--LLNGLENLDTLLLQENSLYTIPK  189 (266)
T ss_dssp             CTTCCEEECTTSCCSCCCTT--TTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccchhcccccccccccCcc--ccccccccceeecccCCCcccCh
Confidence            67777777777777765555  56667777777777777776664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.9e-16  Score=107.17  Aligned_cols=88  Identities=27%  Similarity=0.439  Sum_probs=39.0

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|.++.. |.    .+..+++|++|++++|.+++ +| .+..+++|+++++++|+++.......+..
T Consensus        16 l~~l~~L~~L~ls~N~l~~l-p~----~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~   88 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRAL-PP----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS   88 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCC-CG----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             cccCCCCCEEECCCCccCcc-hh----hhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcC
Confidence            34444455555555554432 22    34444455555555555442 22 24444455555555555442111113444


Q ss_pred             CCCCCEEEccCCcCc
Q 045099          172 LRYLQVLDLSGNPIT  186 (217)
Q Consensus       172 l~~L~~L~L~~n~l~  186 (217)
                      +++|++|++++|+++
T Consensus        89 ~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          89 CPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CTTCCEEECTTSGGG
T ss_pred             CCCCCEEECCCCcCC
Confidence            445555555555444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=3.2e-15  Score=118.05  Aligned_cols=167  Identities=23%  Similarity=0.268  Sum_probs=118.0

Q ss_pred             CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCC-----------CCCceeecCCCCCCCCCccEEECCC
Q 045099           46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNS-----------SDGVIILDLSLFPPFQELQSLDLSE  105 (217)
Q Consensus        46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~L~~L~l~~  105 (217)
                      .|.|+.+.|...         ...++.++++++.+..-.+..+.           ...+..+.+..|..+++|++|++++
T Consensus         9 ~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_           9 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            478999999641         24688899999987643221111           1223334455688899999999999


Q ss_pred             CcCCCccCcch-------------------------------------------hhcc---------------------c
Q 045099          106 NWFGGVSESKA-------------------------------------------YNSS---------------------G  121 (217)
Q Consensus       106 n~l~~~~~~~~-------------------------------------------~~~~---------------------~  121 (217)
                      |+++.......                                           ...+                     .
T Consensus        89 n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~  168 (305)
T d1xkua_          89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG  168 (305)
T ss_dssp             SCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred             CccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc
Confidence            98875432200                                           0011                     1


Q ss_pred             CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCC
Q 045099          122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNL  201 (217)
Q Consensus       122 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L  201 (217)
                      .+++|++|++++|..+...+..+..++.++.|++++|.+++ ++...+..+++|++|+|++|.++. +|.  .+..+++|
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~-~~~~~~~~l~~L~~L~L~~N~L~~-lp~--~l~~l~~L  244 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVK-VPG--GLADHKYI  244 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCSS-CCT--TTTTCSSC
T ss_pred             cCCccCEEECCCCcCCCCChhHhhccccccccccccccccc-cccccccccccceeeecccccccc-ccc--ccccccCC
Confidence            24456666777666666667777888888899999998885 433478888999999999999885 677  78889999


Q ss_pred             CEEeccCCCCCCCCC
Q 045099          202 KRLDLSNNYGFTTPS  216 (217)
Q Consensus       202 ~~L~l~~N~l~~~p~  216 (217)
                      ++|++++|+++.+++
T Consensus       245 ~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         245 QVVYLHNNNISAIGS  259 (305)
T ss_dssp             CEEECCSSCCCCCCT
T ss_pred             CEEECCCCccCccCh
Confidence            999999999988764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-15  Score=118.24  Aligned_cols=124  Identities=23%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             eecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccc
Q 045099           86 ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT  165 (217)
Q Consensus        86 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  165 (217)
                      .++...+..+++|++|+++.|.+....+.    .+..+.+|+.+++++|.+++..+..+..+++|+.|++++|++++ ++
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~  169 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VP  169 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred             cccchhhcccccCCEEecCCccccccccc----ccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cc
Confidence            34445567777788888888777666554    55666777777777777775555566667777777777777764 44


Q ss_pred             hHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      +..+..+++|+++++++|++++..|.  .+..+++|++|++++|++.++++
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~--~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPH--AFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCSCCCH
T ss_pred             hhhhccccccchhhhhhccccccChh--Hhhhhhhcccccccccccccccc
Confidence            34666777777777777777766666  66777777777777777766653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.8e-15  Score=118.54  Aligned_cols=120  Identities=27%  Similarity=0.307  Sum_probs=106.8

Q ss_pred             ecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch
Q 045099           87 LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK  166 (217)
Q Consensus        87 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~  166 (217)
                      +....+..+.+|+.+++++|.+++.++.    .|..+++|+.|++++|.++...+..+..+++|+.+++++|++++..|.
T Consensus       120 ~~~~~~~~~~~L~~l~l~~N~l~~i~~~----~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~  195 (284)
T d1ozna_         120 LGPGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (284)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhcccchhhhccccccccChh----HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChh
Confidence            3445677789999999999999988776    788899999999999999987788899999999999999999975555


Q ss_pred             HhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099          167 QGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       167 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                       .+..+++|++|++++|.+++..+.  .+..+++|++|++++|.+..
T Consensus       196 -~f~~l~~L~~L~l~~N~i~~~~~~--~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         196 -AFRDLGRLMTLYLFANNLSALPTE--ALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             -TTTTCTTCCEEECCSSCCSCCCHH--HHTTCTTCCEEECCSSCEEC
T ss_pred             -Hhhhhhhccccccccccccccccc--ccccccccCEEEecCCCCCC
Confidence             899999999999999999987777  88999999999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-14  Score=112.87  Aligned_cols=145  Identities=24%  Similarity=0.192  Sum_probs=114.8

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeec---------CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEE
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILD---------LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKIL  129 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L  129 (217)
                      .+++.++++++.+.. ++.......+..++         ...+..++.|++|++++|.+....+.    .+..+.++++|
T Consensus        55 ~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~l~~L  129 (266)
T d1p9ag_          55 TRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQEL  129 (266)
T ss_dssp             TTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEE
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccceeecc----ccccccccccc
Confidence            456677777776652 11111111222221         33567889999999999999988776    78889999999


Q ss_pred             EccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099          130 NLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       130 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N  209 (217)
                      ++++|.++...+..+..++.++.+++++|++++ ++...+..+++|++|+|++|+++ .+|.  .+..+++|+.|+|++|
T Consensus       130 ~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~L~-~lp~--~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPK--GFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC-CCCT--TTTTTCCCSEEECCSC
T ss_pred             cccccccceeccccccccccchhcccccccccc-cCccccccccccceeecccCCCc-ccCh--hHCCCCCCCEEEecCC
Confidence            999999997767778889999999999999996 55447889999999999999999 5888  7888999999999999


Q ss_pred             CCC
Q 045099          210 YGF  212 (217)
Q Consensus       210 ~l~  212 (217)
                      .+.
T Consensus       206 p~~  208 (266)
T d1p9ag_         206 PWL  208 (266)
T ss_dssp             CBC
T ss_pred             CCC
Confidence            874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=4.3e-15  Score=109.95  Aligned_cols=125  Identities=26%  Similarity=0.372  Sum_probs=106.2

Q ss_pred             CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcch
Q 045099           46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKA  116 (217)
Q Consensus        46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  116 (217)
                      .|.|..|.|...         ...++.++++++.+.+            .+....|..+++|++|++++|.+...++.  
T Consensus         7 ~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~------------~~~~~~f~~l~~L~~L~L~~N~i~~~~~~--   72 (192)
T d1w8aa_           7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR------------ISSDGLFGRLPHLVKLELKRNQLTGIEPN--   72 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS------------BCCSCSGGGCTTCCEEECCSSCCCCBCTT--
T ss_pred             EEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcc------------cccccccCCCceEeeeecccccccccccc--
Confidence            467888888632         2467889999988862            23455678899999999999999998887  


Q ss_pred             hhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc
Q 045099          117 YNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG  187 (217)
Q Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  187 (217)
                        .+..+++|++|+|++|+++...+..|.++++|++|+|++|+|++ +++..|..+++|++|+|++|.+..
T Consensus        73 --~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          73 --AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             --TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             --ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccc-cCHHHhcCCccccccccccccccc
Confidence              88899999999999999998777789999999999999999995 665588999999999999998874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4e-15  Score=107.26  Aligned_cols=126  Identities=27%  Similarity=0.301  Sum_probs=87.7

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .++..++++++.+.          .   + ...+..+++|+.|++++|.++.. +     .+..+++|++|++++|.++.
T Consensus        18 ~~lr~L~L~~n~I~----------~---i-~~~~~~l~~L~~L~Ls~N~i~~l-~-----~~~~l~~L~~L~ls~N~i~~   77 (162)
T d1a9na_          18 VRDRELDLRGYKIP----------V---I-ENLGATLDQFDAIDFSDNEIRKL-D-----GFPLLRRLKTLLVNNNRICR   77 (162)
T ss_dssp             TSCEEEECTTSCCC----------S---C-CCGGGGTTCCSEEECCSSCCCEE-C-----CCCCCSSCCEEECCSSCCCE
T ss_pred             CcCcEEECCCCCCC----------c---c-CccccccccCCEEECCCCCCCcc-C-----CcccCcchhhhhcccccccC
Confidence            35677888888776          1   2 12345677888888888888754 2     56778888888888888886


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCcCcccccc--cccccCCCCCCEEec
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNPITGRFIA--RLGLSSLRNLKRLDL  206 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p~--~~~l~~l~~L~~L~l  206 (217)
                      ..+..+..+++|+.|++++|+++. ++. ..+..+++|++|++++|+++.. |.  ...+..+++|+.||-
T Consensus        78 l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~-~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          78 IGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETT
T ss_pred             CCccccccccccccceeccccccc-cccccccccccccchhhcCCCccccc-cchHHHHHHHCCCcCeeCC
Confidence            545556678888888888888874 332 2467788888888888887752 31  114567788888773

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.4e-14  Score=99.75  Aligned_cols=106  Identities=29%  Similarity=0.287  Sum_probs=91.0

Q ss_pred             cEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEE
Q 045099           99 QSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL  178 (217)
Q Consensus        99 ~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L  178 (217)
                      ++|++++|.++...      .+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +|  .+..+++|++|
T Consensus         1 R~L~Ls~n~l~~l~------~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVLC------HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSCC------CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCCc------ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC--ccccccccCeE
Confidence            57999999998653      5788999999999999998 577789999999999999999984 65  48899999999


Q ss_pred             EccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          179 DLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       179 ~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      ++++|+++.. +....+..+++|+.|++++|+++..+
T Consensus        71 ~l~~N~i~~~-~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          71 LLCNNRLQQS-AAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             ECCSSCCCSS-STTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ECCCCccCCC-CCchhhcCCCCCCEEECCCCcCCcCc
Confidence            9999999964 32116788999999999999997654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.56  E-value=1.3e-15  Score=120.81  Aligned_cols=112  Identities=29%  Similarity=0.332  Sum_probs=102.1

Q ss_pred             CCccEEECCCCcCCCc--cCcchhhcccCCCCCCEEEccC-CCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099           96 QELQSLDLSENWFGGV--SESKAYNSSGNLKQLKILNLGN-NRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL  172 (217)
Q Consensus        96 ~~L~~L~l~~n~l~~~--~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l  172 (217)
                      .+++.|+|+++.+++.  +|.    .++.+++|++|+|++ |.++|.+|..++.+++|++|++++|++.+..+. .+..+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~----~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~  124 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGC
T ss_pred             EEEEEEECCCCCCCCCCCCCh----HHhcCccccccccccccccccccccccccccccchhhhccccccccccc-cccch
Confidence            4689999999999984  555    899999999999986 899999999999999999999999999976665 78899


Q ss_pred             CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099          173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       173 ~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      ..|++++++.|.+.+.+|.  .+..++.|+.+++++|.+++.
T Consensus       125 ~~L~~l~l~~N~~~~~~p~--~l~~l~~L~~l~l~~n~l~~~  164 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPP--SISSLPNLVGITFDGNRISGA  164 (313)
T ss_dssp             TTCCEEECCSSEEESCCCG--GGGGCTTCCEEECCSSCCEEE
T ss_pred             hhhcccccccccccccCch--hhccCcccceeeccccccccc
Confidence            9999999999999999998  899999999999999998754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=104.95  Aligned_cols=116  Identities=20%  Similarity=0.156  Sum_probs=95.6

Q ss_pred             CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099           91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA  170 (217)
Q Consensus        91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  170 (217)
                      .+.+...+++|+|++|.|+... .    .+..+++|+.|++++|.++. + +.+..+++|++|++++|+++. +++..+.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~-~----~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~-l~~~~~~   84 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIE-N----LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-IGEGLDQ   84 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC-C----GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-ECSCHHH
T ss_pred             hccCcCcCcEEECCCCCCCccC-c----cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccC-CCccccc
Confidence            3456778999999999998874 3    45778999999999999984 4 357889999999999999985 5554567


Q ss_pred             CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      .+++|++|++++|+++.. +....+..+++|++|++++|.++..|
T Consensus        85 ~l~~L~~L~L~~N~i~~~-~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          85 ALPDLTELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             HCTTCCEEECCSCCCCCG-GGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cccccccceecccccccc-ccccccccccccchhhcCCCcccccc
Confidence            899999999999999863 32116788999999999999987765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.5e-13  Score=102.00  Aligned_cols=126  Identities=28%  Similarity=0.382  Sum_probs=95.1

Q ss_pred             cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc
Q 045099           60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS  139 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  139 (217)
                      .++.++++++.+.+               ...+..+++|++|+++.|.+....      .+..+++|+.|+++++.+...
T Consensus        63 nL~~L~Ls~N~l~~---------------~~~l~~l~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~l~~~~~~~~  121 (199)
T d2omxa2          63 NLTQINFSNNQLTD---------------ITPLKNLTKLVDILMNNNQIADIT------PLANLTNLTGLTLFNNQITDI  121 (199)
T ss_dssp             TCCEEECCSSCCCC---------------CGGGTTCTTCCEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCCCC
T ss_pred             CcCcCccccccccC---------------cccccCCccccccccccccccccc------ccccccccccccccccccccc
Confidence            55666666665541               112567778888888888776543      467788888888888887643


Q ss_pred             chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          140 ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       140 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                        ..+..+++|+.|++++|++.. ++  .+..+++|+.|++.+|.+++ ++   .+..+++|++|++++|++++++
T Consensus       122 --~~~~~l~~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l~~n~l~~-l~---~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         122 --DPLKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLNFSSNQVTD-LK---PLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             --GGGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCC-CG---GGTTCTTCCEEECCSSCCCCCG
T ss_pred             --cccchhhhhHHhhhhhhhhcc-cc--cccccccccccccccccccC-Cc---cccCCCCCCEEECCCCCCCCCc
Confidence              346778899999999998873 44  47788999999999999886 33   4688999999999999998875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=2.3e-13  Score=100.97  Aligned_cols=127  Identities=31%  Similarity=0.394  Sum_probs=105.8

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..++.+++.++++.               +.+.+..+++|++|++++|.+++..      .+..+++|++|++++|.+..
T Consensus        40 ~~l~~L~l~~~~i~---------------~l~~l~~l~nL~~L~Ls~N~l~~~~------~l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          40 DQVTTLQADRLGIK---------------SIDGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             TTCCEEECTTSCCC---------------CCTTGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCC
T ss_pred             cCCCEEECCCCCCC---------------CccccccCCCcCcCccccccccCcc------cccCCccccccccccccccc
Confidence            36778888888766               1234678999999999999998854      46789999999999999874


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                       ++ .+..++.|+.+++++|.+.. ++  .+..+++|+.|++++|++.. ++   .+..+++|+.|++.+|++++++
T Consensus        99 -~~-~l~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~n~l~~-~~---~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2          99 -IT-PLANLTNLTGLTLFNNQITD-ID--PLKNLTNLNRLELSSNTISD-IS---ALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             -CG-GGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCC-CG---GGTTCTTCSEEECCSSCCCCCG
T ss_pred             -cc-cccccccccccccccccccc-cc--ccchhhhhHHhhhhhhhhcc-cc---cccccccccccccccccccCCc
Confidence             33 47899999999999999874 43  37889999999999999885 33   5788999999999999998875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=2.9e-13  Score=101.31  Aligned_cols=127  Identities=34%  Similarity=0.357  Sum_probs=91.1

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.+               ...+..+++|++|++++|+++...      .+..+++|+.|++++|.+..
T Consensus        68 ~~L~~L~L~~n~i~~---------------l~~~~~l~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~l~~~~~~~  126 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD---------------IKPLANLKNLGWLFLDENKVKDLS------SLKDLKKLKSLSLEHNGISD  126 (210)
T ss_dssp             TTCCEEECCSSCCCC---------------CGGGTTCTTCCEEECCSSCCCCGG------GGTTCTTCCEEECTTSCCCC
T ss_pred             CCCCEEeCCCccccC---------------ccccccCccccccccccccccccc------cccccccccccccccccccc
Confidence            356677777776651               123466778888888888877632      46677888888888887763


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                        ...+..++.++.+++++|.+++ .+  .+..+++|+++++++|++++ ++   .+..+++|++|++++|+++.++
T Consensus       127 --~~~l~~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~~n~l~~-i~---~l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         127 --INGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISD-IV---PLAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             --CGGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCC-CG---GGTTCTTCCEEECCSSCCCBCG
T ss_pred             --cccccccccccccccccccccc-cc--cccccccccccccccccccc-cc---cccCCCCCCEEECCCCCCCCCh
Confidence              2346677788888888888764 32  36678888888888888886 33   4678888999999998888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=4.3e-13  Score=100.34  Aligned_cols=127  Identities=28%  Similarity=0.300  Sum_probs=105.0

Q ss_pred             cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc
Q 045099           60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS  139 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  139 (217)
                      .++.+++.++.+.               ....+..+++|++|++++|.+++..      .+..+++|++|++++|++++ 
T Consensus        47 ~L~~L~l~~~~i~---------------~l~~l~~l~~L~~L~L~~n~i~~l~------~~~~l~~L~~L~l~~n~i~~-  104 (210)
T d1h6ta2          47 SIDQIIANNSDIK---------------SVQGIQYLPNVTKLFLNGNKLTDIK------PLANLKNLGWLFLDENKVKD-  104 (210)
T ss_dssp             TCCEEECTTSCCC---------------CCTTGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCC-
T ss_pred             CccEEECcCCCCC---------------CchhHhhCCCCCEEeCCCccccCcc------ccccCccccccccccccccc-
Confidence            5677888887765               1234677899999999999999855      35789999999999999985 


Q ss_pred             chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          140 ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       140 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      ++ .+..+++|+.|++++|.+. .++  .+..++.++.++++.|.+++.  .  .+..+++|+.+++++|+++++++
T Consensus       105 l~-~l~~l~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~~--~--~~~~l~~L~~l~l~~n~l~~i~~  173 (210)
T d1h6ta2         105 LS-SLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISDIVP  173 (210)
T ss_dssp             GG-GGTTCTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCC--G--GGGGCTTCSEEECCSSCCCCCGG
T ss_pred             cc-ccccccccccccccccccc-ccc--ccccccccccccccccccccc--c--ccccccccccccccccccccccc
Confidence            44 5888999999999999987 354  478899999999999999863  3  56789999999999999988753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-12  Score=93.22  Aligned_cols=91  Identities=23%  Similarity=0.222  Sum_probs=64.3

Q ss_pred             CCCCCCCCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHh
Q 045099           90 SLFPPFQELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG  168 (217)
Q Consensus        90 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~  168 (217)
                      ..+..+++|++|++.+| .++...+.    .|..+++|+.|+|++|+|+...+..|..+++|++|+|++|+++ .+|...
T Consensus        25 ~~l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~   99 (156)
T d2ifga3          25 HHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT   99 (156)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTT
T ss_pred             ccccCccccCeeecCCCccccccCch----hhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhh
Confidence            34566777788888655 46665555    6777888888888888887666667777888888888888887 455534


Q ss_pred             hcCCCCCCEEEccCCcCc
Q 045099          169 LANLRYLQVLDLSGNPIT  186 (217)
Q Consensus       169 ~~~l~~L~~L~L~~n~l~  186 (217)
                      +. ...|++|+|++|++.
T Consensus       100 ~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3         100 VQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             TC-SCCCCEEECCSSCCC
T ss_pred             hc-cccccccccCCCccc
Confidence            43 346778888888765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.4e-12  Score=98.48  Aligned_cols=112  Identities=30%  Similarity=0.355  Sum_probs=80.3

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccch--------------------HHhhcCCCCC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSIL--------------------SYLNTLTSLT  151 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--------------------~~~~~l~~L~  151 (217)
                      +..+++++++++++|.++...      .+..+++|+.+.++++...+..+                    ..+..+++|+
T Consensus        81 l~~l~~l~~l~~~~n~~~~i~------~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~  154 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKNVS------AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ  154 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSCCG------GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCC
T ss_pred             ccccccccccccccccccccc------cccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccc
Confidence            566777777777777776532      45566777777777666543211                    1244567788


Q ss_pred             EEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099          152 TLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS  216 (217)
Q Consensus       152 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~  216 (217)
                      .|++++|.+++ .+  .+..+++|+.|++++|++++ ++   .+..+++|++|++++|+++++++
T Consensus       155 ~L~l~~n~~~~-~~--~l~~l~~L~~L~Ls~n~l~~-l~---~l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         155 YLSIGNAQVSD-LT--PLANLSKLTTLKADDNKISD-IS---PLASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             EEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCC-CG---GGGGCTTCCEEECTTSCCCBCGG
T ss_pred             ccccccccccc-ch--hhcccccceecccCCCccCC-Ch---hhcCCCCCCEEECcCCcCCCCcc
Confidence            88888888764 33  37788999999999999886 44   46788999999999999988763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1.1e-12  Score=105.89  Aligned_cols=109  Identities=28%  Similarity=0.348  Sum_probs=57.5

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|+++++.+++..+      +..++.++.+.+..|.+++  +..+..+++++.|++++|++++ +++  +..
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~------~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~-l~~--l~~  327 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-ISP--VSS  327 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSC-CGG--GGG
T ss_pred             ccccccCCEeeccCcccCCCCc------ccccccccccccccccccc--ccccchhcccCeEECCCCCCCC-Ccc--ccc
Confidence            4556667777777776665432      2233334444444444432  1224445556666666666653 222  455


Q ss_pred             CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                      +++|++|++++|++++ ++   .+..+++|++|++++|++++++
T Consensus       328 l~~L~~L~L~~n~l~~-l~---~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         328 LTKLQRLFFANNKVSD-VS---SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CG---GGGGCTTCCEEECCSSCCCBCG
T ss_pred             CCCCCEEECCCCCCCC-Ch---hHcCCCCCCEEECCCCcCCCCh
Confidence            5666666666666554 22   3455666666666666665554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.40  E-value=2.3e-12  Score=101.32  Aligned_cols=113  Identities=24%  Similarity=0.168  Sum_probs=96.6

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      .+++|+.|++++|.++...+.    .+..++.+++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..++
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~----~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~-~l~~l~  242 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG-GLADHK  242 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT-TTTTCS
T ss_pred             cCCccCEEECCCCcCCCCChh----Hhhccccccccccccccccccccccccccccceeeeccccccc-cccc-cccccc
Confidence            367899999999999988776    8889999999999999999887888999999999999999998 5776 789999


Q ss_pred             CCCEEEccCCcCccccccc----ccccCCCCCCEEeccCCCCC
Q 045099          174 YLQVLDLSGNPITGRFIAR----LGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~----~~l~~l~~L~~L~l~~N~l~  212 (217)
                      +|++|++++|+++......    ......++|+.|+|++|.+.
T Consensus       243 ~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9999999999998632210    02346789999999999886

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.4e-12  Score=89.51  Aligned_cols=106  Identities=19%  Similarity=0.082  Sum_probs=70.5

Q ss_pred             ccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCC-CCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099           98 LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN-RLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ  176 (217)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  176 (217)
                      .+.++.+++.+...+.     .+..+++|++|++++| .++...+..|..+++|+.|++++|+|+. +++..|..+++|+
T Consensus        10 ~~~l~c~~~~~~~~p~-----~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~   83 (156)
T d2ifga3          10 SSGLRCTRDGALDSLH-----HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLS   83 (156)
T ss_dssp             SSCEECCSSCCCTTTT-----TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCC
T ss_pred             CCeEEecCCCCccCcc-----cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC-ccccccccccccc
Confidence            3456666666655433     5666777788887655 4775555667777888888888888774 5444677778888


Q ss_pred             EEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       177 ~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      +|+|++|+++. +|.  .+.....|++|+|++|.|.
T Consensus        84 ~L~Ls~N~l~~-l~~--~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALES-LSW--KTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCSC-CCS--TTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCCCcc-cCh--hhhccccccccccCCCccc
Confidence            88888888775 444  3333446778888877763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=8.1e-12  Score=100.57  Aligned_cols=135  Identities=26%  Similarity=0.341  Sum_probs=102.6

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeec--------CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEE
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILD--------LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILN  130 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~  130 (217)
                      ..++.+++.++.+.+..+ ......+..+.        ...+..+..++.+.+..|.+++..      .+..+++++.|+
T Consensus       241 ~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~------~~~~~~~l~~L~  313 (384)
T d2omza2         241 TNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS------PISNLKNLTYLT  313 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEE
T ss_pred             cccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCcccccccccccccccccccccc------ccchhcccCeEE
Confidence            356677777777664321 11111111111        223567888999999999998743      567899999999


Q ss_pred             ccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099          131 LGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN  209 (217)
Q Consensus       131 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N  209 (217)
                      +++|++++..  .+..+++|++|++++|++++ ++  .+..+++|++|++++|++++..    .+.++++|+.|++++|
T Consensus       314 ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~--~l~~l~~L~~L~l~~N~l~~l~----~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         314 LYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS--SLANLTNINWLSAGHNQISDLT----PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCBCG----GGTTCTTCSEEECCCE
T ss_pred             CCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch--hHcCCCCCCEEECCCCcCCCCh----hhccCCCCCEeeCCCC
Confidence            9999999753  37889999999999999984 55  4889999999999999999743    3688999999999988

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=1.8e-14  Score=107.12  Aligned_cols=124  Identities=25%  Similarity=0.331  Sum_probs=78.7

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      ..+..++++++.+.             .  .+.+..+++|++|++++|.++...+     .+..+++|++|++++|.++.
T Consensus        48 ~~L~~L~Ls~n~I~-------------~--i~~l~~l~~L~~L~Ls~N~i~~i~~-----~~~~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          48 KACKHLALSTNNIE-------------K--ISSLSGMENLRILSLGRNLIKKIEN-----LDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             TTCCEEECSEEEES-------------C--CCCHHHHTTCCEEECCEEEECSCSS-----HHHHHHHCCEEECSEEECCC
T ss_pred             cccceeECcccCCC-------------C--cccccCCccccChhhcccccccccc-----cccccccccccccccccccc
Confidence            35666777766655             1  1235667778888888887765432     23345567788888887774


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCcCcccccccc--------cccCCCCCCEEe
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNPITGRFIARL--------GLSSLRNLKRLD  205 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p~~~--------~l~~l~~L~~L~  205 (217)
                       + ..+..+++|+.|++++|+++. ++. ..+..+++|++|++++|++....+...        .+..+++|+.||
T Consensus       108 -l-~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         108 -L-SGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             -H-HHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             -c-ccccccccccccccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence             2 346667778888888887764 331 246777788888888877765433210        145677777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.2e-13  Score=102.59  Aligned_cols=110  Identities=28%  Similarity=0.354  Sum_probs=91.1

Q ss_pred             CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099           92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN  171 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  171 (217)
                      +..+++|++|++++|.++.. +     .+..+++|++|++++|.++. +|.....+++|++|++++|+++. ++  .+..
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i-~-----~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~-l~--~~~~  113 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKI-S-----SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS--GIEK  113 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCC-C-----CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC-HH--HHHH
T ss_pred             HhcccccceeECcccCCCCc-c-----cccCCccccChhhccccccc-ccccccccccccccccccccccc-cc--cccc
Confidence            56789999999999999875 3     57789999999999999984 55555556789999999999984 54  4778


Q ss_pred             CCCCCEEEccCCcCccccc-ccccccCCCCCCEEeccCCCCCC
Q 045099          172 LRYLQVLDLSGNPITGRFI-ARLGLSSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       172 l~~L~~L~L~~n~l~~~~p-~~~~l~~l~~L~~L~l~~N~l~~  213 (217)
                      +++|++|++++|+++.... .  .+..+++|+.|++++|++..
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~--~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEID--KLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHH--HHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccccchhccccccc--cccCCCccceeecCCCcccc
Confidence            8999999999999986321 3  57899999999999997643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-11  Score=93.51  Aligned_cols=100  Identities=21%  Similarity=0.307  Sum_probs=73.6

Q ss_pred             ccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchh
Q 045099           47 CDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAY  117 (217)
Q Consensus        47 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  117 (217)
                      |....+.|...         ...++.++++++.+.             .++...|.++++|++|++++|.+...++..  
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~-------------~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~--   72 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-------------VIQKGAFSGFGDLEKIEISQNDVLEVIEAD--   72 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCC-------------EECTTTTTTCTTCCEEEEESCTTCCEECSS--
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCC-------------ccChhHhhccchhhhhhhccccccceeecc--
Confidence            56677777531         135677777777665             455667888999999999999888765432  


Q ss_pred             hcccCCCCCCEEEcc-CCCCCccchHHhhcCCCCCEEEccCccccC
Q 045099          118 NSSGNLKQLKILNLG-NNRLNDSILSYLNTLTSLTTLILCDNSIEG  162 (217)
Q Consensus       118 ~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  162 (217)
                       .|..++.++++.+. .|.+....+..+..+++|+++++++|++..
T Consensus        73 -~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          73 -VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             -SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             -ccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence             56778888888875 467776666778888889999998888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=1.1e-10  Score=87.75  Aligned_cols=100  Identities=33%  Similarity=0.380  Sum_probs=77.8

Q ss_pred             CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099           94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR  173 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  173 (217)
                      ..+.+..+.++.+.+....      .+..+++|++|++++|.+.+..  .+..+++|+.|++++|++++ ++.  +..++
T Consensus       127 ~~~~~~~l~~~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~--l~~l~  195 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP--LASLP  195 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG--GGGCT
T ss_pred             cccchhhhhchhhhhchhh------hhccccccccccccccccccch--hhcccccceecccCCCccCC-Chh--hcCCC
Confidence            3444555555555444322      4567889999999999998543  37889999999999999985 554  78999


Q ss_pred             CCCEEEccCCcCcccccccccccCCCCCCEEeccC
Q 045099          174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN  208 (217)
Q Consensus       174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~  208 (217)
                      +|++|++++|++++ ++   .+.++++|+.|++++
T Consensus       196 ~L~~L~Ls~N~lt~-i~---~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNNQISD-VS---PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTSCCCB-CG---GGTTCTTCCEEEEEE
T ss_pred             CCCEEECcCCcCCC-Cc---ccccCCCCCEEEeeC
Confidence            99999999999997 44   468999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.4e-10  Score=86.49  Aligned_cols=151  Identities=15%  Similarity=0.122  Sum_probs=77.8

Q ss_pred             CcEEEEecCCccccCCCCCC-------------CCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPN-------------NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQ  125 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~  125 (217)
                      ..++.++++++.+...+++.             ...+.+.......|..+++|++|++++|.+....+..   .+..+..
T Consensus        53 ~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~---~~~~l~~  129 (242)
T d1xwdc1          53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH---KIHSLQK  129 (242)
T ss_dssp             TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT---TTCBSSC
T ss_pred             chhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccc---ccccccc
Confidence            35677777777655332221             0112334455566778889999999988887654321   2223334


Q ss_pred             CCEEEccCCCCCccchHHhhcCC-CCCEEEccCccccCccchHhhcCCCCCCEE-EccCCcCcccccccccccCCCCCCE
Q 045099          126 LKILNLGNNRLNDSILSYLNTLT-SLTTLILCDNSIEGSRTKQGLANLRYLQVL-DLSGNPITGRFIARLGLSSLRNLKR  203 (217)
Q Consensus       126 L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L-~L~~n~l~~~~p~~~~l~~l~~L~~  203 (217)
                      +..+...++.+....+..+..++ .++.+++++|+++ .++. ......++..+ ++.+|.++...+.  .+..+++|++
T Consensus       130 l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~-~~~~~~~l~~~~~l~~n~l~~l~~~--~f~~l~~L~~  205 (242)
T d1xwdc1         130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN-CAFNGTQLDELNLSDNNNLEELPND--VFHGASGPVI  205 (242)
T ss_dssp             EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT-TTTTTCCEEEEECTTCTTCCCCCTT--TTTTSCCCSE
T ss_pred             cccccccccccccccccccccccccceeeeccccccc-cccc-ccccchhhhccccccccccccccHH--HhcCCCCCCE
Confidence            44444444455433333333332 4555666666665 2333 12223333333 3455555542222  4555666666


Q ss_pred             EeccCCCCCCCCC
Q 045099          204 LDLSNNYGFTTPS  216 (217)
Q Consensus       204 L~l~~N~l~~~p~  216 (217)
                      |++++|+++.+|+
T Consensus       206 L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         206 LDISRTRIHSLPS  218 (242)
T ss_dssp             EECTTSCCCCCCS
T ss_pred             EECCCCcCCccCH
Confidence            6666666665554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.84  E-value=1.3e-08  Score=80.22  Aligned_cols=114  Identities=26%  Similarity=0.248  Sum_probs=81.9

Q ss_pred             cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc
Q 045099           60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS  139 (217)
Q Consensus        60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  139 (217)
                      +++.++++++++.             .++ +   ..++|++|++++|+++.. |.    .   +.+|+.|++++|.++. 
T Consensus        39 ~l~~LdLs~~~L~-------------~lp-~---~~~~L~~L~Ls~N~l~~l-p~----~---~~~L~~L~l~~n~l~~-   92 (353)
T d1jl5a_          39 QAHELELNNLGLS-------------SLP-E---LPPHLESLVASCNSLTEL-PE----L---PQSLKSLLVDNNNLKA-   92 (353)
T ss_dssp             TCSEEECTTSCCS-------------CCC-S---CCTTCSEEECCSSCCSSC-CC----C---CTTCCEEECCSSCCSC-
T ss_pred             CCCEEEeCCCCCC-------------CCC-C---CCCCCCEEECCCCCCccc-cc----c---hhhhhhhhhhhcccch-
Confidence            5778899888876             121 1   246899999999999854 43    2   4588999999998873 


Q ss_pred             chHHhhcC-CCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099          140 ILSYLNTL-TSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF  212 (217)
Q Consensus       140 ~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~  212 (217)
                      ++    .+ +.|++|++++|.++ .+|.  +..+++|++|++++|.+... +.     ....+..+.+..+...
T Consensus        93 l~----~lp~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~-~~-----~~~~l~~l~~~~~~~~  153 (353)
T d1jl5a_          93 LS----DLPPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKL-PD-----LPPSLEFIAAGNNQLE  153 (353)
T ss_dssp             CC----SCCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCS
T ss_pred             hh----hhccccccccccccccc-cccc--hhhhccceeecccccccccc-cc-----ccccccchhhcccccc
Confidence            32    23 46999999999998 4664  67789999999999988753 32     2455667776665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.2e-09  Score=82.41  Aligned_cols=112  Identities=21%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             CCCCCCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCC-CCCccc-hHHhhc-CCCCCEEEccCc--cccCccc
Q 045099           92 FPPFQELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNN-RLNDSI-LSYLNT-LTSLTTLILCDN--SIEGSRT  165 (217)
Q Consensus        92 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-p~~~~~-l~~L~~L~l~~n--~l~~~~p  165 (217)
                      +..+++|++|+++++ .++...-..   .+..+++|++|+++++ .+++.. ...+.. .++|+.|+++++  .++....
T Consensus        91 l~~~~~L~~L~Ls~c~~itd~~l~~---l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l  167 (284)
T d2astb2          91 LAKNSNLVRLNLSGCSGFSEFALQT---LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL  167 (284)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHH---HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred             HhcCCCCcCccccccccccccccch---hhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccc
Confidence            455677777777774 343221110   1234566666666653 333211 111211 234444444432  1221111


Q ss_pred             hHhhcCCCCCCEEEccCCc-CcccccccccccCCCCCCEEeccC
Q 045099          166 KQGLANLRYLQVLDLSGNP-ITGRFIARLGLSSLRNLKRLDLSN  208 (217)
Q Consensus       166 ~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~l~~l~~L~~L~l~~  208 (217)
                      ......+++|++|++++|. +++....  .+.++++|++|++++
T Consensus       168 ~~l~~~~~~L~~L~L~~~~~itd~~~~--~l~~~~~L~~L~L~~  209 (284)
T d2astb2         168 STLVRRCPNLVHLDLSDSVMLKNDCFQ--EFFQLNYLQHLSLSR  209 (284)
T ss_dssp             HHHHHHCTTCSEEECTTCTTCCGGGGG--GGGGCTTCCEEECTT
T ss_pred             cccccccccccccccccccCCCchhhh--hhcccCcCCEEECCC
Confidence            1122345556666665542 4444444  455555666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.74  E-value=8.1e-08  Score=75.44  Aligned_cols=121  Identities=21%  Similarity=0.175  Sum_probs=71.8

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND  138 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (217)
                      .+++.++++++.+.             .++    ..+.+|+.|++++|.++....      +  .+.|++|++++|.+..
T Consensus        58 ~~L~~L~Ls~N~l~-------------~lp----~~~~~L~~L~l~~n~l~~l~~------l--p~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          58 PHLESLVASCNSLT-------------ELP----ELPQSLKSLLVDNNNLKALSD------L--PPLLEYLGVSNNQLEK  112 (353)
T ss_dssp             TTCSEEECCSSCCS-------------SCC----CCCTTCCEEECCSSCCSCCCS------C--CTTCCEEECCSSCCSS
T ss_pred             CCCCEEECCCCCCc-------------ccc----cchhhhhhhhhhhcccchhhh------h--cccccccccccccccc
Confidence            46677777776665             111    124567788888877765321      1  2357888888888773


Q ss_pred             cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099          139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP  215 (217)
Q Consensus       139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p  215 (217)
                       +|. ++.+++|+.|++++|.++. .+.    ....+..+.+..+....  ..  .+..++.++.++++.|.+..++
T Consensus       113 -lp~-~~~l~~L~~L~l~~~~~~~-~~~----~~~~l~~l~~~~~~~~~--~~--~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         113 -LPE-LQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE--LP--ELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             -CCC-CTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS--CC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred             -ccc-hhhhccceeeccccccccc-ccc----ccccccchhhccccccc--cc--cccccccceecccccccccccc
Confidence             443 4667788888888777763 222    23455666665554442  22  4455666666666666655443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.3e-09  Score=87.35  Aligned_cols=109  Identities=28%  Similarity=0.305  Sum_probs=50.4

Q ss_pred             ccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCccch---Hhhc
Q 045099           98 LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGSRTK---QGLA  170 (217)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~---~~~~  170 (217)
                      |+.||+++|++++..-..   -+..++++++|+|++|.++..    +...+..+++|+.|+|++|.++..-..   ..+.
T Consensus         4 l~~ld~~~~~i~~~~~~~---l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAE---LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEESCCCCHHHHHH---HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCEEEeeCCcCChHHHHH---HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            455555555555432111   233445555556665555532    223344555566666655555421000   0111


Q ss_pred             -CCCCCCEEEccCCcCccc----ccccccccCCCCCCEEeccCCCC
Q 045099          171 -NLRYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLDLSNNYG  211 (217)
Q Consensus       171 -~l~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~l~~N~l  211 (217)
                       ...+|++|++++|.+++.    ++.  .+..+++|++|++++|.+
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~--~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSS--TLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHH--HTTSCTTCCEEECCSSBC
T ss_pred             cCCCCCCEEECCCCCccccccccccc--hhhccccccccccccccc
Confidence             123456666666555532    222  344555566666655554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.60  E-value=2.8e-08  Score=78.77  Aligned_cols=118  Identities=19%  Similarity=0.178  Sum_probs=80.3

Q ss_pred             CCCCccEEECCCCcCCCccCcc-hhhcccCCCCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCccch--
Q 045099           94 PFQELQSLDLSENWFGGVSESK-AYNSSGNLKQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGSRTK--  166 (217)
Q Consensus        94 ~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~--  166 (217)
                      .++.|++|+++.|.++...... +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.+++....  
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            4577888888888876532111 122466788899999999988643    334566788899999999988743111  


Q ss_pred             -Hhhc--CCCCCCEEEccCCcCccc----ccccccc-cCCCCCCEEeccCCCCCC
Q 045099          167 -QGLA--NLRYLQVLDLSGNPITGR----FIARLGL-SSLRNLKRLDLSNNYGFT  213 (217)
Q Consensus       167 -~~~~--~l~~L~~L~L~~n~l~~~----~p~~~~l-~~l~~L~~L~l~~N~l~~  213 (217)
                       ..+.  ..+.|++|++++|.++..    +..  .+ .++++|++|++++|.+..
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~--~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--VIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHH--HHHccCCCCCEEECCCCcCCC
Confidence             1222  246789999999988752    222  23 257789999999998865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.58  E-value=4e-08  Score=77.85  Aligned_cols=117  Identities=21%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc-----chHHhhcCCCCCEEEccCccccCc----cc
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS-----ILSYLNTLTSLTTLILCDNSIEGS----RT  165 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p  165 (217)
                      .+.|+.+++++|.++......+...+...+.|++|++++|.+...     +...+..+++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            345666666666655433222233455677888888888888743     122355678888888888887632    22


Q ss_pred             hHhhcCCCCCCEEEccCCcCcccccccc--ccc--CCCCCCEEeccCCCCC
Q 045099          166 KQGLANLRYLQVLDLSGNPITGRFIARL--GLS--SLRNLKRLDLSNNYGF  212 (217)
Q Consensus       166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~--~l~--~l~~L~~L~l~~N~l~  212 (217)
                       ..+..+++|++|++++|.+++.-....  .+.  ..+.|++|++++|+++
T Consensus       237 -~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         237 -IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             -HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             -ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence             245677888888888888876322200  222  2467888888888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4e-08  Score=76.03  Aligned_cols=136  Identities=20%  Similarity=0.178  Sum_probs=89.1

Q ss_pred             CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccC-CCCC
Q 045099           59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGN-NRLN  137 (217)
Q Consensus        59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~  137 (217)
                      .++..++++++.+...        .+    ...+..+++|++|+++++.+++....    .+..+++|++|++++ +.++
T Consensus        46 ~~L~~LdLs~~~i~~~--------~l----~~l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~it  109 (284)
T d2astb2          46 FRVQHMDLSNSVIEVS--------TL----HGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFS  109 (284)
T ss_dssp             BCCCEEECTTCEECHH--------HH----HHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCC
T ss_pred             CCCCEEECCCCccCHH--------HH----HHHHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCcccccccccc
Confidence            3566677776655411        01    12356788999999999988766555    677888999999988 4676


Q ss_pred             ccch-HHhhcCCCCCEEEccCc-cccCccchHhh-cCCCCCCEEEccCC--cCccc-ccccccccCCCCCCEEeccCCC-
Q 045099          138 DSIL-SYLNTLTSLTTLILCDN-SIEGSRTKQGL-ANLRYLQVLDLSGN--PITGR-FIARLGLSSLRNLKRLDLSNNY-  210 (217)
Q Consensus       138 ~~~p-~~~~~l~~L~~L~l~~n-~l~~~~p~~~~-~~l~~L~~L~L~~n--~l~~~-~p~~~~l~~l~~L~~L~l~~N~-  210 (217)
                      +... .-...+++|++|+++++ .++.......+ ...+.|+.|+++++  .+++. +..  ....+++|++|+++++. 
T Consensus       110 d~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~--l~~~~~~L~~L~L~~~~~  187 (284)
T d2astb2         110 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST--LVRRCPNLVHLDLSDSVM  187 (284)
T ss_dssp             HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH--HHHHCTTCSEEECTTCTT
T ss_pred             ccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccc--cccccccccccccccccC
Confidence            4432 23456889999999886 45432111123 33578999999875  34442 332  44678999999999864 


Q ss_pred             CC
Q 045099          211 GF  212 (217)
Q Consensus       211 l~  212 (217)
                      ++
T Consensus       188 it  189 (284)
T d2astb2         188 LK  189 (284)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.7e-08  Score=80.04  Aligned_cols=117  Identities=26%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccc----hHHhh-cCCCCCEEEccCccccCc----cc
Q 045099           95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI----LSYLN-TLTSLTTLILCDNSIEGS----RT  165 (217)
Q Consensus        95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~-~l~~L~~L~l~~n~l~~~----~p  165 (217)
                      ...|+.++++.+.++......+...+...++|++|+|++|.+++..    +..+. ..+.|++|++++|.++..    +.
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            3567777777777665433322223445567888888888776432    22332 345688888888887632    22


Q ss_pred             hHhhcCCCCCCEEEccCCcCcccccccc--ccc-CCCCCCEEeccCCCCC
Q 045099          166 KQGLANLRYLQVLDLSGNPITGRFIARL--GLS-SLRNLKRLDLSNNYGF  212 (217)
Q Consensus       166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~--~l~-~l~~L~~L~l~~N~l~  212 (217)
                      . .+..+++|++|++++|++++......  .+. +...|+.|++.+|.+.
T Consensus       391 ~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         391 A-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             H-HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             H-HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            2 35566788888888888775322200  122 3346788888877764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.9e-08  Score=71.51  Aligned_cols=84  Identities=29%  Similarity=0.292  Sum_probs=53.5

Q ss_pred             cCCCCCCEEEccCCCCCccc--hHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccccc-----c
Q 045099          121 GNLKQLKILNLGNNRLNDSI--LSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIAR-----L  193 (217)
Q Consensus       121 ~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~-----~  193 (217)
                      ..++.|++|++++|+++...  +..+..+++|+.|++++|.++. ++.-.......|+.+++.+|++.......     .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            45677777777777777532  3455667778888888888774 33323334456777888888777543320     0


Q ss_pred             cccCCCCCCEEe
Q 045099          194 GLSSLRNLKRLD  205 (217)
Q Consensus       194 ~l~~l~~L~~L~  205 (217)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            345677887776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.7e-08  Score=68.89  Aligned_cols=85  Identities=27%  Similarity=0.189  Sum_probs=65.4

Q ss_pred             CCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch------
Q 045099           93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK------  166 (217)
Q Consensus        93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~------  166 (217)
                      ..++.|++|++++|+++...+.  ...+..+++|+.|++++|.++...+-.......|+.+++++|.+......      
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~--~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDM--SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGG--GTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchh--HHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            4588999999999999986431  11567899999999999999965443445566899999999999854331      


Q ss_pred             HhhcCCCCCCEEE
Q 045099          167 QGLANLRYLQVLD  179 (217)
Q Consensus       167 ~~~~~l~~L~~L~  179 (217)
                      ..+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            2366789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.42  E-value=2.6e-07  Score=65.70  Aligned_cols=115  Identities=13%  Similarity=0.134  Sum_probs=79.1

Q ss_pred             CCCCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCCCCccc----hHHhhcCCCCCEEEccCccccCccc---
Q 045099           94 PFQELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI----LSYLNTLTSLTTLILCDNSIEGSRT---  165 (217)
Q Consensus        94 ~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p---  165 (217)
                      ..+.|++|+|+++ .++...-..++..+...++|++|+|++|.+....    ...+...+.|+.|++++|.++....   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999874 4554333334456777888999999999887432    2345567889999999998874211   


Q ss_pred             hHhhcCCCCCCEEEccCCcCcc-------cccccccccCCCCCCEEeccCCC
Q 045099          166 KQGLANLRYLQVLDLSGNPITG-------RFIARLGLSSLRNLKRLDLSNNY  210 (217)
Q Consensus       166 ~~~~~~l~~L~~L~L~~n~l~~-------~~p~~~~l~~l~~L~~L~l~~N~  210 (217)
                      ...+...++|++|++++|.+..       .+..  .+...+.|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~--~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHH--HHHhCCCccEeeCcCCC
Confidence            1245667889999998886552       1333  45567889999887653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.10  E-value=1.9e-06  Score=60.93  Aligned_cols=116  Identities=16%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             CCCCCccEEECCC-CcCCCccCcchhhcccCCCCCCEEEccCCCCCccchH----HhhcCCCCCEEEccCccccCccch-
Q 045099           93 PPFQELQSLDLSE-NWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS----YLNTLTSLTTLILCDNSIEGSRTK-  166 (217)
Q Consensus        93 ~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~l~~n~l~~~~p~-  166 (217)
                      ...+.|++|++++ +.++...-..+...+...++|++|++++|.++.....    .+...++++.+++++|.++..... 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568899999987 4565544334455677889999999999999754333    445678999999999988632111 


Q ss_pred             --HhhcCCCCCCEEEc--cCCcCcc----cccccccccCCCCCCEEeccCCC
Q 045099          167 --QGLANLRYLQVLDL--SGNPITG----RFIARLGLSSLRNLKRLDLSNNY  210 (217)
Q Consensus       167 --~~~~~l~~L~~L~L--~~n~l~~----~~p~~~~l~~l~~L~~L~l~~N~  210 (217)
                        ..+...++|+.++|  +.|.+.+    .+..  .+...+.|+.|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~--~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN--MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH--HHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHH--HHHhCCCcCEEeCcCCC
Confidence              24567788887655  4667765    2333  55678899999998764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.99  E-value=1.1e-05  Score=56.98  Aligned_cols=92  Identities=15%  Similarity=0.199  Sum_probs=68.2

Q ss_pred             cCCCCCCEEEccC-CCCCccc----hHHhhcCCCCCEEEccCccccCccc---hHhhcCCCCCCEEEccCCcCccc----
Q 045099          121 GNLKQLKILNLGN-NRLNDSI----LSYLNTLTSLTTLILCDNSIEGSRT---KQGLANLRYLQVLDLSGNPITGR----  188 (217)
Q Consensus       121 ~~l~~L~~L~L~~-n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~~l~~L~~L~L~~n~l~~~----  188 (217)
                      .+.+.|++|+|++ +.++...    -..+...++|+.|++++|.++....   ...+...+.|+.|++++|.+++.    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            4568999999997 4576432    2345677899999999999873211   12456678999999999999863    


Q ss_pred             ccccccccCCCCCCEEeccCCCCCCC
Q 045099          189 FIARLGLSSLRNLKRLDLSNNYGFTT  214 (217)
Q Consensus       189 ~p~~~~l~~l~~L~~L~l~~N~l~~~  214 (217)
                      +..  .+...+.|++|++++|.+..+
T Consensus        92 l~~--aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          92 LLR--STLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHH--HTTTTCCCSEEECCCCSSCCC
T ss_pred             HHH--HHHhCCcCCEEECCCCcCCCc
Confidence            223  567778999999999976654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=0.00015  Score=50.60  Aligned_cols=118  Identities=14%  Similarity=0.039  Sum_probs=79.9

Q ss_pred             CcEEEEecCCc-cccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099           59 GRVTELSLNRL-KHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN  137 (217)
Q Consensus        59 ~~v~~l~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  137 (217)
                      ..++.+++++. .+...        ++..+ ...+...++|++|++++|.++......+...+...+.++.+++++|.+.
T Consensus        17 ~~L~~L~L~~~~~i~~~--------~~~~l-~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVP--------TLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCCEEECTTCTTCCHH--------HHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCcEEEcCCCCCCCHH--------HHHHH-HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            46777888763 33210        11111 1234578899999999999987655555556778899999999999997


Q ss_pred             ccch----HHhhcCCCCCEEEc--cCccccCc----cchHhhcCCCCCCEEEccCCcCc
Q 045099          138 DSIL----SYLNTLTSLTTLIL--CDNSIEGS----RTKQGLANLRYLQVLDLSGNPIT  186 (217)
Q Consensus       138 ~~~p----~~~~~l~~L~~L~l--~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~  186 (217)
                      ....    ..+...++|+.+++  ++|.+...    +.. .+...+.|+.|++..+...
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCCc
Confidence            5433    34566788987666  46667531    222 4667899999999877543