Citrus Sinensis ID: 045101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTDFFKN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccEEEEEEEEEcccccccEEEEEEEEEEcccccccccccEEEEEEEccEEEEEEEccccEEEEcccEEEEEEEEEEEHHHHHHHHHHHcccccccEEEEEEEEEEccEEEEEEEEcEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccEEEEEEEEEEccccccccEEEEEEEEEEccEEEEEEccccccEEcccccEEEEEEEEEcHHHHHHHHHHccccccccEEEEEEEEEEccEEEEEEEEccccccEcccccccHccc
Coil and Loop (DISEMBL)
maqlvdkaknyvtdkvtnmrkpeaslskfrlkgvsregvdyladvsidnpyshsipiceisyvlksdgrviatgtipdpgsikgndktvlnvpvkvpHSVLVSLVKDIARDWDIDYLLEVGliidlplignftiplstqgevklptltdffkn
Flexible Loop (DISEMBL)
maqlvdkaknyvtdkvtnmrkpeaslskfrlkgvsREGVDYLADVsidnpyshsiPICEISYVLKSDGRVIATgtipdpgsikgnDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTiplstqgevklptltdffkn
Low Complexity Region (SEG)
MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTDFFKN
Disordered region (IsUnstruct)
****************************FRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLT*****
Disordered Region (DISOPRED)
*****DKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIA***********GNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTDFFK*
Disordered Region (DISEMBL)
MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTDFFKN
Disordered Region (DISPRO)
*AQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTDFFKN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTDFFKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
P46519	152	Desiccation protectant pr	no	no	0.986	0.993	0.688	3e-57
P46518	151	Late embryogenesis abunda	N/A	no	0.986	1.0	0.688	9e-57
P22241	151	Desiccation-related prote	N/A	no	0.986	1.0	0.629	7e-52
O82355	166	Desiccation-related prote	yes	no	0.986	0.909	0.589	1e-49
O03983	151	Probable desiccation-rela	no	no	0.986	1.0	0.589	2e-49

>sp|P46519|LEA14_SOYBN Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1

 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 127/151 (84%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           M+QL+DKAKNYV +KVTNM KPEAS++    K VSR+ V+YLA VS+ NPYS  IPICEI
Sbjct: 1   MSQLLDKAKNYVAEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
            Y LKS G+ IA+GTIPDPGS+K +D T+L+VPVKVPHS+L+SL KDI  DWDIDY L++
Sbjct: 61  KYSLKSAGKEIASGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDL 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL+IDLP+IGNFTIPLS +GE+KLPTL+D F
Sbjct: 121 GLVIDLPVIGNFTIPLSQKGEIKLPTLSDMF 151

Glycine max (taxid: 3847)

>sp|P46518|LEA14_GOSHI Late embryogenesis abundant protein Lea14-A OS=Gossypium hirsutum GN=LEA14-A PE=2 SV=1

 Score =  218 bits (556), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 129/151 (85%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           M+QL++KAK++V DKV N++KPEAS+S   LK VSRE V+Y A VS+ NPYSHSIPICEI
Sbjct: 1   MSQLLEKAKDFVVDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           SY  +S GR IA+GTIPDPGS+K +D T+L+VPVKVP+++LVSLVKDI  DWDIDY LE+
Sbjct: 61  SYNFRSAGRGIASGTIPDPGSLKASDTTMLDVPVKVPYNILVSLVKDIGADWDIDYELEL 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL IDLP++GNFTIPLS +GE+KLPTL+D F
Sbjct: 121 GLTIDLPIVGNFTIPLSQKGEIKLPTLSDIF 151

Gossypium hirsutum (taxid: 3635)

>sp|P22241|DRPD_CRAPL Desiccation-related protein PCC27-45 OS=Craterostigma plantagineum PE=2 SV=1

 Score =  202 bits (513), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 95/151 (62%), Positives = 120/151 (79%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           MAQL++KAKN+V +KV N+ KP+AS+    LK V R G+ YL  + ++NPYS SIP+ EI
Sbjct: 1   MAQLMNKAKNFVAEKVANVEKPKASVEDVDLKDVGRHGITYLTRICVENPYSASIPVGEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
            Y LKS GRVI +G IPDPGS+KGNDKT+L   +KVPHS LVSL+KDI  D DIDY+LE+
Sbjct: 61  KYTLKSAGRVIVSGNIPDPGSLKGNDKTMLEPAIKVPHSALVSLIKDIGADMDIDYVLEL 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL++DLP+IGNFTIPLS +GE+KLP L+D F
Sbjct: 121 GLVVDLPVIGNFTIPLSHKGEMKLPGLSDIF 151

Craterostigma plantagineum (taxid: 4153)

>sp|O82355|LEA2R_ARATH Desiccation-related protein At2g46140 OS=Arabidopsis thaliana GN=At2g46140 PE=1 SV=1

 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 120/151 (79%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           ++ L+DKAK +  +K+ N+  PEA++     KGV+R+GVDY A VS+ NPYS SIPIC+I
Sbjct: 16  ISSLLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQI 75

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           SY+LKS  R IA+GTIPDPGS+ G+  TVL+VPVKV +S+ VSL+KD+  DWDIDY L++
Sbjct: 76  SYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYSIAVSLMKDMCTDWDIDYQLDI 135

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL  D+P++G+ TIP+STQGE+KLP+L DFF
Sbjct: 136 GLTFDIPVVGDITIPVSTQGEIKLPSLRDFF 166

Arabidopsis thaliana (taxid: 3702)

>sp|O03983|LEA14_ARATH Probable desiccation-related protein LEA14 OS=Arabidopsis thaliana GN=LEA14 PE=1 SV=1

 Score =  194 bits (493), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 117/151 (77%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           MA L+DKAK++V DK+T + KPE S++   LK V+R+ V+YLA VS+ NPYSHSIPICEI
Sbjct: 1   MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           S+   S GR I  G IPDPGS+K  D T L++PV VP+S+L +L +D+  DWDIDY L++
Sbjct: 61  SFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQI 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL IDLP++G FTIP+S++GE+KLPT  DFF
Sbjct: 121 GLTIDLPVVGEFTIPISSKGEIKLPTFKDFF 151

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
449432112	152	PREDICTED: desiccation protectant protei	0.986	0.993	0.701	2e-57
255642519	152	unknown [Glycine max]	0.986	0.993	0.701	1e-56
356531943	152	PREDICTED: desiccation protectant protei	0.986	0.993	0.701	1e-56
224127776	151	predicted protein [Populus trichocarpa]	0.986	1.0	0.688	5e-56
255541726	151	Late embryogenesis abundant protein Lea1	0.986	1.0	0.662	6e-56
351727809	152	desiccation protectant protein Lea14 hom	0.986	0.993	0.688	2e-55
255632159	152	unknown [Glycine max]	0.986	0.993	0.688	2e-55
255630218	176	unknown [Glycine max]	0.986	0.857	0.688	2e-55
1170745	151	RecName: Full=Late embryogenesis abundan	0.986	1.0	0.688	5e-55
388511305	152	unknown [Lotus japonicus]	0.986	0.993	0.655	6e-53

>gi|449432112|ref|XP_004133844.1| PREDICTED: desiccation protectant protein Lea14 homolog [Cucumis sativus] gi|449480250|ref|XP_004155841.1| PREDICTED: desiccation protectant protein Lea14 homolog [Cucumis sativus]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 130/151 (86%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           MA LVDKA NYV++KV NM KPEAS++   LKG+S   V+YLA+VS+ NPYSHSIPICEI
Sbjct: 1   MANLVDKAMNYVSEKVANMPKPEASVTNVDLKGLSFGSVEYLANVSVTNPYSHSIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           SY+LKSDGR IATG +PDPGS+K +D T+L+V V VPHSVL+SL +DI RDWDIDY L++
Sbjct: 61  SYILKSDGRDIATGKVPDPGSLKASDSTMLDVVVNVPHSVLISLARDIGRDWDIDYELQI 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL+IDLP+IGNFTIPLST+GE+KLPT++D F
Sbjct: 121 GLVIDLPVIGNFTIPLSTKGEIKLPTMSDVF 151

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642519|gb|ACU21523.1| unknown [Glycine max]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 127/151 (84%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           M+QL++KAKNYV +KVTNM KPEAS++    K VSR+ V+YLA VS+ NPYS SIPICEI
Sbjct: 1   MSQLLEKAKNYVAEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVQNPYSTSIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
            Y LKS GR IA GTIPDPGS+K +D T+L+VPVKVPHS+L+SL KDI  DWDIDY L++
Sbjct: 61  KYSLKSAGREIAAGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDI 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL+IDLP+IGNFTIPLS +GE+KLPTLTD F
Sbjct: 121 GLVIDLPVIGNFTIPLSQKGEIKLPTLTDMF 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531943|ref|XP_003534535.1| PREDICTED: desiccation protectant protein Lea14 homolog [Glycine max]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 127/151 (84%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           MA+L++KAKNYV +KVTNM KPEAS++    K VSR+ V+YLA VS+ NPYS SIPICEI
Sbjct: 1   MAELLEKAKNYVAEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVQNPYSTSIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
            Y LKS GR IA GTIPDPGS+K +D T+L+VPVKVPHS+L+SL KDI  DWDIDY L++
Sbjct: 61  KYSLKSAGREIAAGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDI 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL+IDLP+IGNFTIPLS +GE+KLPTLTD F
Sbjct: 121 GLVIDLPVIGNFTIPLSQKGEIKLPTLTDMF 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127776|ref|XP_002320161.1| predicted protein [Populus trichocarpa] gi|222860934|gb|EEE98476.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 129/151 (85%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           M++L+ KAK ++ +KV N++ PEA+++   L+GV R+ +DY A VS+DNPY  +IPICEI
Sbjct: 1   MSELLCKAKQFLVEKVANVKTPEATVTDVDLEGVHRDSIDYGAKVSVDNPYEAAIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           SYVLKSDGRVIA+GTIPDPGS+K  D T+L+VPVKVPHSVLVSLVKDI RDWDIDY LE+
Sbjct: 61  SYVLKSDGRVIASGTIPDPGSLKAKDTTILDVPVKVPHSVLVSLVKDIGRDWDIDYELEI 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL IDLP++GNFTIPLS +GEVKLPTL+D F
Sbjct: 121 GLTIDLPIVGNFTIPLSWKGEVKLPTLSDLF 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541726|ref|XP_002511927.1| Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis] gi|223549107|gb|EEF50596.1| Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 100/151 (66%), Positives = 131/151 (86%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           M + +DKAKN+V +K+ N++KPEAS++   L  V R+ V+Y A +S++NPY H +PICE+
Sbjct: 1   MDEFMDKAKNFVAEKIANVKKPEASVTDVDLGSVHRDRVEYNAKISVNNPYGHPLPICEV 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           SY LKSDGRVIA+G +PDPGS+K +D T+LNVP++VPHS+LVSLVKDI+RDWDIDY+LEV
Sbjct: 61  SYTLKSDGRVIASGKMPDPGSLKASDTTLLNVPLEVPHSILVSLVKDISRDWDIDYMLEV 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL IDLP+IG+FTIPLS++GEVKLPTL+DFF
Sbjct: 121 GLTIDLPIIGDFTIPLSSKGEVKLPTLSDFF 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727809|ref|NP_001238709.1| desiccation protectant protein Lea14 homolog [Glycine max] gi|1170746|sp|P46519.1|LEA14_SOYBN RecName: Full=Desiccation protectant protein Lea14 homolog gi|472850|gb|AAA61564.1| putative desiccation protectant protein, homolog of Lea14, GenBank Accession Number M88321 [Glycine max]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 127/151 (84%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           M+QL+DKAKNYV +KVTNM KPEAS++    K VSR+ V+YLA VS+ NPYS  IPICEI
Sbjct: 1   MSQLLDKAKNYVAEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
            Y LKS G+ IA+GTIPDPGS+K +D T+L+VPVKVPHS+L+SL KDI  DWDIDY L++
Sbjct: 61  KYSLKSAGKEIASGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDL 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL+IDLP+IGNFTIPLS +GE+KLPTL+D F
Sbjct: 121 GLVIDLPVIGNFTIPLSQKGEIKLPTLSDMF 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255632159|gb|ACU16432.1| unknown [Glycine max]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 127/151 (84%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           MA+L+DKAKNYV +KVTNM KPEAS++    K VSR+ V+YLA VS+ NPYS  IPICEI
Sbjct: 1   MAELLDKAKNYVAEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
            Y LKS G+ IA+GTIPDPGS+K +D T+L+VPVKVPHS+L+SL KDI  DWDIDY L++
Sbjct: 61  KYSLKSAGKEIASGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDL 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL+IDLP+IGNFTIPLS +GE+KLPTL+D F
Sbjct: 121 GLVIDLPVIGNFTIPLSQKGEIKLPTLSDMF 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630218|gb|ACU15464.1| unknown [Glycine max]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 127/151 (84%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           M+QL+DKAKNYV +KVTNM KPEAS++    K VSR+ V+YLA VS+ NPYS  IPICEI
Sbjct: 25  MSQLLDKAKNYVAEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPICEI 84

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
            Y LKS G+ IA+GTIPDPGS+K +D T+L+VPVKVPHS+L+SL KDI  DWDIDY L++
Sbjct: 85  KYSLKSAGKEIASGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDL 144

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL+IDLP+IGNFTIPLS +GE+KLPTL+D F
Sbjct: 145 GLVIDLPVIGNFTIPLSQKGEIKLPTLSDMF 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170745|sp|P46518.1|LEA14_GOSHI RecName: Full=Late embryogenesis abundant protein Lea14-A gi|167326|gb|AAA18542.1| Group 4 late embryogenesis-abundant protein [Gossypium hirsutum] gi|167328|gb|AAA18543.1| Group 4 late embryogenesis-abundant protein [Gossypium hirsutum]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 129/151 (85%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           M+QL++KAK++V DKV N++KPEAS+S   LK VSRE V+Y A VS+ NPYSHSIPICEI
Sbjct: 1   MSQLLEKAKDFVVDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           SY  +S GR IA+GTIPDPGS+K +D T+L+VPVKVP+++LVSLVKDI  DWDIDY LE+
Sbjct: 61  SYNFRSAGRGIASGTIPDPGSLKASDTTMLDVPVKVPYNILVSLVKDIGADWDIDYELEL 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL IDLP++GNFTIPLS +GE+KLPTL+D F
Sbjct: 121 GLTIDLPIVGNFTIPLSQKGEIKLPTLSDIF 151

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511305|gb|AFK43714.1| unknown [Lotus japonicus]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 123/151 (81%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           M+QL+DKAK +V +KV NM  PEAS++    K VSRE V+YLA +S+ NPYS  IPICEI
Sbjct: 1   MSQLLDKAKAFVAEKVANMPMPEASVTDVDFKKVSRECVEYLAKISVSNPYSTPIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           +Y LKS GR IA+GTIPDPGS+K +D T+L VPVKV HS+L+S+ KDI  DWDIDY L++
Sbjct: 61  NYTLKSAGREIASGTIPDPGSLKASDTTLLEVPVKVAHSILLSIAKDIGADWDIDYHLDI 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL+IDLP+IGNFTIPLS +GE+KLPT+TD F
Sbjct: 121 GLVIDLPVIGNFTIPLSQKGEIKLPTITDMF 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2025346	151	LEA14 "AT1G01470" [Arabidopsis	0.986	1.0	0.589	6.9e-47
TAIR|locus:2062933	166	AT2G46140 "AT2G46140" [Arabido	0.986	0.909	0.589	8.8e-47
TAIR|locus:2051749	325	AT2G44060 "AT2G44060" [Arabido	0.947	0.446	0.311	1.9e-19

TAIR|locus:2025346 LEA14 "AT1G01470" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 89/151 (58%), Positives = 117/151 (77%)

Query:     1 MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
             MA L+DKAK++V DK+T + KPE S++   LK V+R+ V+YLA VS+ NPYSHSIPICEI
Sbjct:     1 MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEI 60

Query:    61 SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
             S+   S GR I  G IPDPGS+K  D T L++PV VP+S+L +L +D+  DWDIDY L++
Sbjct:    61 SFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQI 120

Query:   121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
             GL IDLP++G FTIP+S++GE+KLPT  DFF
Sbjct:   121 GLTIDLPVVGEFTIPISSKGEIKLPTFKDFF 151

GO:0003674 "molecular_function" evidence=ND

GO:0009269 "response to desiccation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0009644 "response to high light intensity" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2062933 AT2G46140 "AT2G46140" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 89/151 (58%), Positives = 120/151 (79%)

Query:     1 MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
             ++ L+DKAK +  +K+ N+  PEA++     KGV+R+GVDY A VS+ NPYS SIPIC+I
Sbjct:    16 ISSLLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQI 75

Query:    61 SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
             SY+LKS  R IA+GTIPDPGS+ G+  TVL+VPVKV +S+ VSL+KD+  DWDIDY L++
Sbjct:    76 SYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYSIAVSLMKDMCTDWDIDYQLDI 135

Query:   121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
             GL  D+P++G+ TIP+STQGE+KLP+L DFF
Sbjct:   136 GLTFDIPVVGDITIPVSTQGEIKLPSLRDFF 166

GO:0003674 "molecular_function" evidence=ND

GO:0009269 "response to desiccation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2051749 AT2G44060 "AT2G44060" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 47/151 (31%), Positives = 86/151 (56%)

Query:     5 VDKAKNYVTD---KVTN---MRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPIC 58
             +DK K+++ D   K+       KP A +S   +  ++ E  D + DV + NP    IP+ 
Sbjct:    43 LDKVKDFIHDIGEKLEGTIGFGKPTADVSAIHIPKINLERADIVVDVLVKNPNPVPIPLI 102

Query:    59 EISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLL 118
             +++Y+++SDGR + +G IPD G++K + +  + +P+ + +  + S   DI     I Y +
Sbjct:   103 DVNYLVESDGRKLVSGLIPDAGTLKAHGEETVKIPLTLIYDDIKSTYNDINPGMIIPYRI 162

Query:   119 EVGLIIDLPLIGNFTIPLSTQGEVKLPTLTD 149
             +V LI+D+P++G  T+PL   GE+ +P   D
Sbjct:   163 KVDLIVDVPVLGRLTLPLEKCGEIPIPKKPD 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.138   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      153       153   0.00081  105 3  11 22  0.38    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.15u 0.11s 14.26t   Elapsed:  00:00:00
  Total cpu time:  14.15u 0.11s 14.26t   Elapsed:  00:00:00
  Start:  Sat May 11 01:45:26 2013   End:  Sat May 11 01:45:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009269 "response to desiccation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82355	LEA2R_ARATH	No assigned EC number	0.5894	0.9869	0.9096	yes	no
P22241	DRPD_CRAPL	No assigned EC number	0.6291	0.9869	1.0	N/A	no
P46518	LEA14_GOSHI	No assigned EC number	0.6887	0.9869	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
smart00769	100	smart00769, WHy, Water Stress and Hypersensitive r	9e-28
pfam03168	98	pfam03168, LEA_2, Late embryogenesis abundant prot	1e-25
COG5608	161	COG5608, COG5608, LEA14-like dessication related p	4e-05

>gnl|CDD|214812 smart00769, WHy, Water Stress and Hypersensitive response

 Score = 98.5 bits (246), Expect = 9e-28
 Identities = 32/100 (32%), Positives = 52/100 (52%)

Query: 25  SLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKG 84
            +       VS   ++ +  V + NP    IP+  +SY L  +G  + +G IPD G++ G
Sbjct: 1   DVVDVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPG 60

Query: 85  NDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLII 124
           N +TVL+VPV V   +  +L+  IA   +I Y L+  L +
Sbjct: 61  NGRTVLDVPVTVNLFLAEALIWHIANGEEIPYRLDGKLTV 100

Length = 100

>gnl|CDD|217400 pfam03168, LEA_2, Late embryogenesis abundant protein

 Score = 93.6 bits (233), Expect = 1e-25
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 44  DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVS 103
            + + NP S  +P   +SY L  +G+ +A+GT P PG++     T L VPV V    L  
Sbjct: 1   TLRVRNPNSFPLPYDGLSYDLSYNGQELASGTSPQPGTVPAGGTTTLEVPVTVSLDDLAR 60

Query: 104 LVKD-IARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQG 140
           L+KD +A   ++ Y L   L +  P+ G+ T+PLS +G
Sbjct: 61  LLKDLLAVGLELPYTLRGRLKVGGPVKGSRTVPLSKEG 98

Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family. Length = 98

>gnl|CDD|227895 COG5608, COG5608, LEA14-like dessication related protein [Defense mechanisms]

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 21  KPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPG 80
           KP     K +   V+    + +  + I NP    IP+  + Y +  +   I  G I    
Sbjct: 32  KPGVESMKAKWGKVTNSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGT 91

Query: 81  SIKGNDKTVLNVPVKVPHSVLVS-LVKDIAR------DWDIDYLLEVGLI 123
           ++  N +  ++VP+++ +S +    V  I           I  +++VG +
Sbjct: 92  TVPPNSRETVDVPLRLDNSKIKEWWVTHIENGERSTIRVRIKGVVKVGGM 141

Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
COG5608	161	LEA14-like dessication related protein [Defense me	99.93
smart00769	100	WHy Water Stress and Hypersensitive response.	99.92
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.78
PLN03160	219	uncharacterized protein; Provisional	98.68
PF11797	140	DUF3324: Protein of unknown function C-terminal (D	96.41
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	95.45
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	95.15
PF11906	149	DUF3426: Protein of unknown function (DUF3426); In	92.43
PF00927	107	Transglut_C: Transglutaminase family, C-terminal i	87.14
PRK09525	1027	lacZ beta-D-galactosidase; Reviewed	82.64
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	80.93
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	80.44
PF12505	125	DUF3712: Protein of unknown function (DUF3712); In	80.32

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=99.93  E-value=1.7e-24  Score=161.93  Aligned_cols=127  Identities=16%  Similarity=0.283  Sum_probs=116.3

Q ss_pred             hHhhhhcCccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEE
Q 045101           11 YVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVL   90 (153)
Q Consensus        11 f~~~k~~~~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v   90 (153)
                      |+..-+.-+++|.++..+++|+.++..++++..+++|+|||+||||++|+.|++++||.++++|...++++||+++.+++
T Consensus        22 ~lS~~~i~~~~p~ve~~ka~wGkvt~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tv  101 (161)
T COG5608          22 HLSGCMIPVKKPGVESMKAKWGKVTNSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETV  101 (161)
T ss_pred             HhhCCceEcCCCCceEEEEEEEEEeccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEE
Confidence            55566777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeEEEechhHHHHHH-hhcCCC--ccceEEEEEEEEccCcccceeeeeeeEe
Q 045101           91 NVPVKVPHSVLVSLVK-DIARDW--DIDYLLEVGLIIDLPLIGNFTIPLSTQG  140 (153)
Q Consensus        91 ~vpv~v~~~~l~~~~~-~l~~~~--~i~Y~l~g~l~~~~p~~G~~~ip~~~~G  140 (153)
                      .+++++++..+++.++ .+.+++  .++|+++|.++++.-   ...+|++..+
T Consensus       102 dv~l~~d~~~~ke~w~~hi~ngErs~Ir~~i~~~v~vg~~---d~eVpi~~~~  151 (161)
T COG5608         102 DVPLRLDNSKIKEWWVTHIENGERSTIRVRIKGVVKVGGM---DYEVPIKDNE  151 (161)
T ss_pred             EEEEEEehHHHHHHHHHHhhccCcccEEEEEEEEEEEccE---EEEEEEEEcc
Confidence            9999999999999998 455554  499999999998754   4689998887

>smart00769 WHy Water Stress and Hypersensitive response

Probab=99.92  E-value=2.1e-24  Score=152.14  Aligned_cols=98  Identities=33%  Similarity=0.511  Sum_probs=95.2

Q ss_pred             EEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechhHHHHH
Q 045101           26 LSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLV  105 (153)
Q Consensus        26 l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~  105 (153)
                      +.+++|.++++.+++|.++++|+|||++||++++++|++++||+++++|.+++.++|||++++.+++|+++++..+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~~~~~~~~   81 (100)
T smart00769        2 VVDVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLFLAEALI   81 (100)
T ss_pred             cceeEeccccceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeehhHhHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCccceEEEEEEE
Q 045101          106 KDIARDWDIDYLLEVGLI  123 (153)
Q Consensus       106 ~~l~~~~~i~Y~l~g~l~  123 (153)
                      .++.+++.++|+++|+++
T Consensus        82 ~~l~~~~~~~y~l~g~l~   99 (100)
T smart00769       82 WHIANGEEIPYRLDGKLT   99 (100)
T ss_pred             HhhccCCCccEEEEEEEC
Confidence            999999999999999985

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.78  E-value=5.5e-18  Score=117.31  Aligned_cols=97  Identities=29%  Similarity=0.454  Sum_probs=88.1

Q ss_pred             EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechhHHHHHHhhc---CCCccceEEEE
Q 045101           44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIA---RDWDIDYLLEV  120 (153)
Q Consensus        44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~---~~~~i~Y~l~g  120 (153)
                      +++|+|||++++.+++++|+++++|.+++++...+.+.+|+++++.+.+++++++..+.+.+.++.   ....++|+++|
T Consensus         1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~~~l~~~~~~~~~~~v~~~~~g   80 (101)
T PF03168_consen    1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLPRLLKDLLAGRVPFDVTYRIRG   80 (101)
T ss_dssp             EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred             CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHHHHHHhhhccccceEEEEEEEE
Confidence            589999999999999999999999999999999999999999999999999999999988888887   57889999999


Q ss_pred             EEE-EccCcccceeeeeeeEe
Q 045101          121 GLI-IDLPLIGNFTIPLSTQG  140 (153)
Q Consensus       121 ~l~-~~~p~~G~~~ip~~~~G  140 (153)
                      ++. ++.++++..++|++.+|
T Consensus        81 ~~~v~~~~~~~~~~v~~~~~~  101 (101)
T PF03168_consen   81 TFKVLGTPIFGSVRVPVSCEC  101 (101)
T ss_dssp             EEE-EE-TTTSCEEEEEEEEE
T ss_pred             EEEEcccceeeeEEEeEEeEC
Confidence            999 58887789999999986

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>PLN03160 uncharacterized protein; Provisional

Probab=98.68  E-value=1.5e-06  Score=69.42  Aligned_cols=103  Identities=19%  Similarity=0.279  Sum_probs=78.6

Q ss_pred             cCCeEEEEEEEEceeccc---------ceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEE
Q 045101           20 RKPEASLSKFRLKGVSRE---------GVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVL   90 (153)
Q Consensus        20 ~~P~V~l~~v~~~~~~l~---------~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v   90 (153)
                      +.|++++.++++.++++.         .+++.+.++|+|||..++..++.+-.++-+|..++++..+ ++.++|+++..+
T Consensus        65 k~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p-~g~~~ar~T~~l  143 (219)
T PLN03160         65 KDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTP-PGKAKARRTMRM  143 (219)
T ss_pred             cCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcC-CcccCCCCeEEE
Confidence            889999999999988752         2457788899999999999999999999999999999975 488999998887


Q ss_pred             EEeEEEechhH---HHHHHhhcCCCccceEEEEEEEE
Q 045101           91 NVPVKVPHSVL---VSLVKDIARDWDIDYLLEVGLII  124 (153)
Q Consensus        91 ~vpv~v~~~~l---~~~~~~l~~~~~i~Y~l~g~l~~  124 (153)
                      .+.+.+....+   ..+..|+ ..+.++..+..++..
T Consensus       144 ~~tv~~~~~~~~~~~~L~~D~-~~G~v~l~~~~~v~g  179 (219)
T PLN03160        144 NVTVDIIPDKILSVPGLLTDI-SSGLLNMNSYTRIGG  179 (219)
T ss_pred             EEEEEEEeceeccchhHHHHh-hCCeEEEEEEEEEEE
Confidence            77766554432   3344443 345566665555544

>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function

Probab=96.41  E-value=0.18  Score=37.38  Aligned_cols=104  Identities=12%  Similarity=0.147  Sum_probs=79.7

Q ss_pred             cCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCE-EEEEEECCCCeeEeCCCeEEEEEeEEEec
Q 045101           20 RKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGR-VIATGTIPDPGSIKGNDKTVLNVPVKVPH   98 (153)
Q Consensus        20 ~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~-~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~   98 (153)
                      ..|++++.++.+.....   +-.+...++||.+.-|.=-.+++.|+=.|. ++......+...+.+++.-.+.+++.-. 
T Consensus        26 ~~p~L~l~~v~~~~~n~---~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~-  101 (140)
T PF11797_consen   26 VPPKLKLGKVKPGQING---RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGK-  101 (140)
T ss_pred             cCcccEEeeeeeeEECC---eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCCc-
Confidence            68899999999865554   677899999999999999999999998885 5666666778999999998887775211 


Q ss_pred             hhHHHHHHhhcCCCccceEEEEEEEEccCcccceeeeeeeEeEEe
Q 045101           99 SVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVK  143 (153)
Q Consensus        99 ~~l~~~~~~l~~~~~i~Y~l~g~l~~~~p~~G~~~ip~~~~G~i~  143 (153)
                              .|   .+=.|+++..+.-     |.-+-.|+++.+|+
T Consensus       102 --------~l---k~G~Y~l~~~~~~-----~~~~W~f~k~F~It  130 (140)
T PF11797_consen  102 --------KL---KPGKYTLKITAKS-----GKKTWTFTKDFTIT  130 (140)
T ss_pred             --------Cc---cCCEEEEEEEEEc-----CCcEEEEEEEEEEC
Confidence                    12   2226999999874     34477788877664

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=95.45  E-value=0.19  Score=33.67  Aligned_cols=72  Identities=19%  Similarity=0.197  Sum_probs=48.5

Q ss_pred             CCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEe
Q 045101           21 KPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVP   97 (153)
Q Consensus        21 ~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~   97 (153)
                      +|.+.+........-..+..+.+.+.|+|-....  ...+...++++|..+.+-..   ..|+++.+..+.+.+...
T Consensus         1 ~pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i---~~L~~g~~~~v~~~~~~~   72 (101)
T PF07705_consen    1 KPDLTVSITVSPSNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTI---PSLAPGESETVTFTWTPP   72 (101)
T ss_dssp             ---EEE-EEEC-SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEE---SEB-TTEEEEEEEEEE-S
T ss_pred             CCCEEEEEeeCCCcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEE---CCcCCCcEEEEEEEEEeC
Confidence            5777773222223335678899999999988777  77889999999999944333   588999999998888665

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=95.15  E-value=0.099  Score=42.42  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             eEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechh
Q 045101           39 VDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSV  100 (153)
Q Consensus        39 ~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~  100 (153)
                      ..+.-.+.|+|||=+++.+.+++-++......++++.......|++.+++.+.+.+.....+
T Consensus       124 l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t~i~~  185 (238)
T PF07092_consen  124 LNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKTTIGD  185 (238)
T ss_pred             EEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeEEecC
Confidence            46788999999999999999999999999999999999999999999998888877777543

The function of this family is unknown.

>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised

Probab=92.43  E-value=1.9  Score=31.66  Aligned_cols=73  Identities=10%  Similarity=0.131  Sum_probs=57.3

Q ss_pred             eEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEE-ECCEEEEEEECCC----------CeeEeCCCeEEEE
Q 045101           23 EASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLK-SDGRVIATGTIPD----------PGSIKGNDKTVLN   91 (153)
Q Consensus        23 ~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~-lng~~ia~G~~~~----------~~~Ipa~g~~~v~   91 (153)
                      .+.+.+.++.......-.+.++..|.|-.+++.++=.+.-++. .+|+.+++=...-          ...+|++++..+.
T Consensus        52 ~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~  131 (149)
T PF11906_consen   52 ALKIESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFR  131 (149)
T ss_pred             eEEEeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEE
Confidence            3455555555555455679999999999999999999999999 9999888866622          5679999988888


Q ss_pred             EeEE
Q 045101           92 VPVK   95 (153)
Q Consensus        92 vpv~   95 (153)
                      +.+.
T Consensus       132 ~~~~  135 (149)
T PF11906_consen  132 LRLE  135 (149)
T ss_pred             EEee
Confidence            7764

This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds

Probab=87.14  E-value=3  Score=28.85  Aligned_cols=66  Identities=18%  Similarity=0.263  Sum_probs=42.0

Q ss_pred             EEceecccceEEEEEEEEECCCCCCccccc---EEEEEEECCEEEEE-EECCCCeeEeCCCeEEEEEeEE
Q 045101           30 RLKGVSREGVDYLADVSIDNPYSHSIPICE---ISYVLKSDGRVIAT-GTIPDPGSIKGNDKTVLNVPVK   95 (153)
Q Consensus        30 ~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~---l~y~l~lng~~ia~-G~~~~~~~Ipa~g~~~v~vpv~   95 (153)
                      ++.+----|.+|.+.++++||-+.+|.=..   -...++-+|..-.. .......+|+++++..+++.++
T Consensus         6 ~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~   75 (107)
T PF00927_consen    6 KLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT   75 (107)
T ss_dssp             EEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred             EECCCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence            343334478899999999999887743222   33455777886533 3334557999999998888874

Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....

>PRK09525 lacZ beta-D-galactosidase; Reviewed

Probab=82.64  E-value=2.8  Score=40.68  Aligned_cols=49  Identities=12%  Similarity=0.282  Sum_probs=41.3

Q ss_pred             EEEEEECCCCC-CcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101           43 ADVSIDNPYSH-SIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP   93 (153)
Q Consensus        43 ~~l~V~NPN~~-~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp   93 (153)
                      ..++|.|-|.| .|.=-.+.|+|..||+.+.+|.. . ..|+++.+..+++|
T Consensus       638 ~~~~i~N~~~F~~l~~~~~~w~~~~~G~~~~~g~~-~-~~~~p~~~~~i~l~  687 (1027)
T PRK09525        638 LTIEVTSEYLFRHSDNELLHWSVALDGKPLASGEV-P-LDLAPQGSQRITLP  687 (1027)
T ss_pred             cEEEEEEcccCCcccccEEEEEEEECCEEEEeeeE-c-cccCCCCceEEecC
Confidence            48999999998 34444678899999999999996 3 58999999999998

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=80.93  E-value=4.6  Score=35.03  Aligned_cols=64  Identities=13%  Similarity=0.131  Sum_probs=46.0

Q ss_pred             hhHHhhhhHhhhhcCccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCE
Q 045101            4 LVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGR   69 (153)
Q Consensus         4 ~~~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~   69 (153)
                      ++.-+-+|+..-.-  +.=.|+|..|+=.=++-+++-|.++++=.|||=|++.|+.++.+++.--.
T Consensus       315 ~ig~~~gFv~AttK--pL~~v~v~~I~NVlaS~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~  378 (387)
T PF12751_consen  315 VIGFAIGFVFATTK--PLTDVQVVSIQNVLASEQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSR  378 (387)
T ss_pred             HHHHHHHhhhhcCc--ccccceEEEeeeeeeccceEEEeeEEEEECCCeEEEEeccceeeeEecCC
Confidence            35666777765442  11256666666555667777888888889999999999999999986443

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.44  E-value=17  Score=25.32  Aligned_cols=54  Identities=17%  Similarity=0.268  Sum_probs=30.3

Q ss_pred             EEEECCCCeeEeCCCeEEEEEeEEEechhHHHHHHhhcCCCccceEEEEEEEEccCccc--ceeeee
Q 045101           72 ATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIG--NFTIPL  136 (153)
Q Consensus        72 a~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~~~~p~~G--~~~ip~  136 (153)
                      ......+.++|||+++..++|.++++-. +..         .-.+-+.|-+.+.-- -|  .++||+
T Consensus        56 ~~~~~~~~vTV~ag~s~~v~vti~~p~~-~~~---------~~~~~~eG~I~~~~~-~~~~~lsIPy  111 (112)
T PF06280_consen   56 TVSFSPDTVTVPAGQSKTVTVTITPPSG-LDA---------SNGPFYEGFITFKSS-DGEPDLSIPY  111 (112)
T ss_dssp             EEE---EEEEE-TTEEEEEEEEEE--GG-GHH---------TT-EEEEEEEEEESS-TTSEEEEEEE
T ss_pred             eEEeCCCeEEECCCCEEEEEEEEEehhc-CCc---------ccCCEEEEEEEEEcC-CCCEEEEeee
Confidence            4556778899999999999999888542 111         334566777776422 23  245554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length

Probab=80.32  E-value=3.3  Score=29.73  Aligned_cols=42  Identities=24%  Similarity=0.466  Sum_probs=34.0

Q ss_pred             eEEEEEEEEceec-ccceEEEEEEEEECCCCCCcccccEEEEE
Q 045101           23 EASLSKFRLKGVS-REGVDYLADVSIDNPYSHSIPICEISYVL   64 (153)
Q Consensus        23 ~V~l~~v~~~~~~-l~~~~~~~~l~V~NPN~~~L~i~~l~y~l   64 (153)
                      .+++.++++..-. .++..+...+.+.||-++.+.+..++++|
T Consensus        83 g~~I~~~~v~~~~~~~g~~~~~~~~l~NPS~~ti~lG~v~~~l  125 (125)
T PF12505_consen   83 GFTISDFDVTGGTPADGINLNATVTLPNPSPLTIDLGNVTLNL  125 (125)
T ss_pred             CceEeeEEeecCCCCCcEEEEEEEEEcCCCeEEEEeccEEEeC
Confidence            4558888876555 57889999999999999999888887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	153
1yyc_A	174	Solution Structure Of A Putative Late Embryogenesis		1e-50
1xo8_A	151	Solution Structure Of At1g01470 From Arabidopsis Th		2e-50

>pdb|1YYC|A Chain A, Solution Structure Of A Putative Late Embryogenesis Abundant (Lea) Protein At2g46140.1 Length = 174

Iteration: 1
 Score =  194 bits (494), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 120/151 (79%)
Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           ++ L+DKAK +  +K+ N+  PEA++     KGV+R+GVDY A VS+ NPYS SIPIC+I
Sbjct: 24  ISSLLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQI 83
Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           SY+LKS  R IA+GTIPDPGS+ G+  TVL+VPVKV +S+ VSL+KD+  DWDIDY L++
Sbjct: 84  SYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYSIAVSLMKDMCTDWDIDYQLDI 143
Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL  D+P++G+ TIP+STQGE+KLP+L DFF
Sbjct: 144 GLTFDIPVVGDITIPVSTQGEIKLPSLRDFF 174

>pdb|1XO8|A Chain A, Solution Structure Of At1g01470 From Arabidopsis Thaliana Length = 151

Iteration: 1
 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 117/151 (77%)
Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           MA L+DKAK++V DK+T + KPE S++   LK V+R+ V+YLA VS+ NPYSHSIPICEI
Sbjct: 1   MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEI 60
Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           S+   S GR I  G IPDPGS+K  D T L++PV VP+S+L +L +D+  DWDIDY L++
Sbjct: 61  SFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQI 120
Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL IDLP++G FTIP+S++GE+KLPT  DFF
Sbjct: 121 GLTIDLPVVGEFTIPISSKGEIKLPTFKDFF 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
1xo8_A	151	AT1G01470; structural genomics, protein structure	4e-60
1yyc_A	174	LEA protein, putative late embryogenesis abundant	1e-58
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	1e-09

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1 Length = 151

 Score =  182 bits (462), Expect = 4e-60
 Identities = 89/151 (58%), Positives = 117/151 (77%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           MA L+DKAK++V DK+T + KPE S++   LK V+R+ V+YLA VS+ NPYSHSIPICEI
Sbjct: 1   MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           S+   S GR I  G IPDPGS+K  D T L++PV VP+S+L +L +D+  DWDIDY L++
Sbjct: 61  SFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQI 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL IDLP++G FTIP+S++GE+KLPT  DFF
Sbjct: 121 GLTIDLPVVGEFTIPISSKGEIKLPTFKDFF 151

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} Length = 174

 Score =  179 bits (454), Expect = 1e-58
 Identities = 89/151 (58%), Positives = 120/151 (79%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           ++ L+DKAK +  +K+ N+  PEA++     KGV+R+GVDY A VS+ NPYS SIPIC+I
Sbjct: 24  ISSLLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQI 83

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           SY+LKS  R IA+GTIPDPGS+ G+  TVL+VPVKV +S+ VSL+KD+  DWDIDY L++
Sbjct: 84  SYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYSIAVSLMKDMCTDWDIDYQLDI 143

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL  D+P++G+ TIP+STQGE+KLP+L DFF
Sbjct: 144 GLTFDIPVVGDITIPVSTQGEIKLPSLRDFF 174

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304} Length = 136

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 2/112 (1%)

Query: 28  KFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDK 87
           K     V+    + +A   + N     I +    Y ++ +G  +A G    P ++K    
Sbjct: 7   KAMWGVVTDSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASA 66

Query: 88  TVLNVPVKVPHSVLVS-LVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLST 138
           T L   +++ +S L    V  IA        + +   I++    +  +P+  
Sbjct: 67  TTLKFSLRLNNSFLREWWVTHIANGEKTKIRVAIKPTIEIGG-RDVEVPVFL 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
1yyc_A	174	LEA protein, putative late embryogenesis abundant	100.0
1xo8_A	151	AT1G01470; structural genomics, protein structure	100.0
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	99.89
3idu_A	127	Uncharacterized protein; all beta-protein, structu	93.02
2xzz_A	102	Protein-glutamine gamma-glutamyltransferase K; 2.3	91.05
3cmg_A	667	Putative beta-galactosidase; structural genomics,	88.47
2l0d_A	114	Cell surface protein; structural genomics, northea	85.38
1yq2_A	1024	Beta-galactosidase; glycosyl hydrolase family 2, T	84.16
3fn9_A	692	Putative beta-galactosidase; structural genomics,	80.46
3mnm_A	123	ADP-ribosylation factor-binding protein GGA2; IG-l	80.1

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=3.3e-52  Score=319.92  Aligned_cols=151  Identities=59%  Similarity=1.061  Sum_probs=149.2

Q ss_pred             CchhhHHhhhhHhhhhcCccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCe
Q 045101            1 MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPG   80 (153)
Q Consensus         1 ~~~~~~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~   80 (153)
                      |+|||||||+|++||++++++|+|++++++|.++++++++|.++++|+|||++|||+++++|+|++||+++++|++++++
T Consensus        24 ~~~~~~~~k~f~~~ki~~~~~PeV~v~~v~~~~~~l~~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~  103 (174)
T 1yyc_A           24 ISSLLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPG  103 (174)
T ss_dssp             HHHHHHHHHHHHHHTTTTSCCCEEEEEEEEEEEECSSSEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCC
T ss_pred             hhHHHHHhhhhHHHhhcCCCCCEEEEEEeEEeccccceEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeCCCeEEEEEeEEEechhHHHHHHhhcCCCccceEEEEEEEEccCcccceeeeeeeEeEEeCCCCcccc
Q 045101           81 SIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF  151 (153)
Q Consensus        81 ~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~~~~p~~G~~~ip~~~~G~i~lp~l~~~~  151 (153)
                      +|||+|++.++||++++|.+++++++++.++|.++|+|+|++.+++|++|.+++||+++|+++||++||+|
T Consensus       104 tIpa~g~~~v~Vpv~v~~~~l~~~~~~l~~~~~i~Y~L~g~L~id~pv~G~~tip~s~~Gei~LP~l~d~~  174 (174)
T 1yyc_A          104 SLVGSGTTVLDVPVKVAYSIAVSLMKDMCTDWDIDYQLDIGLTFDIPVVGDITIPVSTQGEIKLPSLRDFF  174 (174)
T ss_dssp             BCCSSEEEEEEEEEEESHHHHHHTCCCCCSSEEECEEEEEEEEEECTTSSEEEEEEEEECCEEECTTSSCC
T ss_pred             eECCCCcEEEEEEEEEEHHHHHHHHHhcCCCCccceEEEEEEEeccCCcCCEEEeEeeceEEECCCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=100.00  E-value=5.6e-53  Score=317.82  Aligned_cols=151  Identities=59%  Similarity=1.066  Sum_probs=149.4

Q ss_pred             CchhhHHhhhhHhhhhcCccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCe
Q 045101            1 MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPG   80 (153)
Q Consensus         1 ~~~~~~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~   80 (153)
                      |+|||||||+|++||++++++|+|+++++++.++++++++|.++++|+|||+++||+++++|+|++||+++++|.+++++
T Consensus         1 ~~~~~~~~~~f~~~k~~~~~~P~v~v~~v~~~~~~~~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~   80 (151)
T 1xo8_A            1 MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPG   80 (151)
T ss_dssp             CTTSCSCCCTTCSSSCCCCCSCCCBCSEEEECCCTTTEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECC
T ss_pred             ChhHHHHHHHHHHHhhcCCCCCEEEEEEeEEeccCcceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeCCCeEEEEEeEEEechhHHHHHHhhcCCCccceEEEEEEEEccCcccceeeeeeeEeEEeCCCCcccc
Q 045101           81 SIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF  151 (153)
Q Consensus        81 ~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~~~~p~~G~~~ip~~~~G~i~lp~l~~~~  151 (153)
                      +|||+|+++++||++++|.++.++++++.+++.++|+|+|++++++|++|.+++||+++|+++||++||+|
T Consensus        81 ~ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~i~lp~~G~~tip~~~~Gei~lp~~~d~~  151 (151)
T 1xo8_A           81 SLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLPVVGEFTIPISSKGEIKLPTFKDFF  151 (151)
T ss_dssp             CCSSSSEEEEEECCCEEHHHHHHHHHHHHHHSEEEEEEEEEEEECCTTTSSEEEEEEEEEEEECCSCSSCC
T ss_pred             EECCCCcEEEEEEEEEEHHHHHHHHHhcccCCcccEEEEEEEEEcccccCcEEEeEeeccEEECCCCCCCC
Confidence            99999999999999999999999999999899999999999999999999999999999999999999998

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=99.89  E-value=4.3e-22  Score=147.11  Aligned_cols=113  Identities=16%  Similarity=0.168  Sum_probs=99.8

Q ss_pred             EEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechhHHH
Q 045101           24 ASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVS  103 (153)
Q Consensus        24 V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~  103 (153)
                      |.-.+.+|+.++.+.+.|.++|+|+|||++||+++|++|+|++||.++++|.++++++|||+|++.+++++++++..+.+
T Consensus         3 v~~i~~~WG~v~~~~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~   82 (136)
T 3but_A            3 LESVKAMWGVVTDSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE   82 (136)
T ss_dssp             EEEEEEEECCCCSSEEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT
T ss_pred             ccceeeeeccEeCcEEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH
Confidence            55667899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHhh-cCCCccceEEEEEEEEccCcccceeeeee
Q 045101          104 LVKDI-ARDWDIDYLLEVGLIIDLPLIGNFTIPLS  137 (153)
Q Consensus       104 ~~~~l-~~~~~i~Y~l~g~l~~~~p~~G~~~ip~~  137 (153)
                      .|... .+++.-.|+++.++.++++ -+.+.+|+.
T Consensus        83 ~~~~hi~nge~s~l~i~~~~~l~v~-g~~~~vp~~  116 (136)
T 3but_A           83 WWVTHIANGEKTKIRVAIKPTIEIG-GRDVEVPVF  116 (136)
T ss_dssp             HHHHHHHTTSEEEEEEEEEEEEECC--CCEECCCE
T ss_pred             HHHHHhhcCCceEEEEEEEEEEEeC-CEEEEEccc
Confidence            66655 5666777888888888877 456677755

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A

Probab=93.02  E-value=1.7  Score=30.79  Aligned_cols=84  Identities=11%  Similarity=0.044  Sum_probs=61.4

Q ss_pred             ccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEec
Q 045101           19 MRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPH   98 (153)
Q Consensus        19 ~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~   98 (153)
                      +..|.+.+ ++..-.---.+....+.+.|+|=...+.  .++.-.|++||..+.+-    ...++++.++++++.++   
T Consensus        14 ~~~pDL~V-~is~P~~v~~G~~~ti~vtV~N~G~~~a--~~~~V~lyvng~~v~t~----~v~La~G~s~tv~f~~~---   83 (127)
T 3idu_A           14 FEFPDLTV-EIKGPDVVGVNKLAEYEVHVKNLGGIGV--PSTKVRVYINGTLYKNW----TVSLGPKEEKVLTFNWT---   83 (127)
T ss_dssp             CSSCCEEE-EEESCSEECTTCCEEEEEEEEECSSSCE--EEEEEEEEETTEEEEEE----EEEECTTCEEEEEEEEC---
T ss_pred             ccCCCeEE-EecCCCcccCCCEEEEEEEEEECCCCcc--CCcEEEEEECCEEEeeE----EeccCCCCeEEEEEEEE---
Confidence            48898888 6653222245778899999999988874  57888899999988764    34799999999888863   


Q ss_pred             hhHHHHHHhhcCCCccceEEEEEEE
Q 045101           99 SVLVSLVKDIARDWDIDYLLEVGLI  123 (153)
Q Consensus        99 ~~l~~~~~~l~~~~~i~Y~l~g~l~  123 (153)
                                 ....=.|+|++.++
T Consensus        84 -----------~~~~G~~~v~AvVD   97 (127)
T 3idu_A           84 -----------PTQEGMYRINATVD   97 (127)
T ss_dssp             -----------CSSCEEEEEEEEES
T ss_pred             -----------cCCCcEEEEEEEEc
Confidence                       12233577777764

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}

Probab=91.05  E-value=0.21  Score=34.22  Aligned_cols=72  Identities=21%  Similarity=0.303  Sum_probs=48.6

Q ss_pred             ccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEe
Q 045101           19 MRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVP   97 (153)
Q Consensus        19 ~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~   97 (153)
                      +..|++++   ++.+-.-.+..+.+.++.+||-+.  ++.+..+.++--|..  ++..-+-..|+++++..+++.++=.
T Consensus         3 ~~~P~i~I---~v~g~~~v~~~l~v~vsf~NPL~~--~L~~c~~~vEG~GL~--~~~~~~~~~v~pg~~~~~~~~~~P~   74 (102)
T 2xzz_A            3 YFQSMLSL---TLLGAAVVGQECEVQIVFKNPLPV--TLTNVVFRLEGSGLQ--RPKILNVGDIGGNETVTLRQSFVPV   74 (102)
T ss_dssp             ---CEEEE---EESSCCCSSSCEEEEEEEECCSSS--CBCSEEEEEEETTTE--EEEEEEECCBCTTCEEEEEEEECCC
T ss_pred             ccCCcEEE---EECCCcccCCeEEEEEEEECCCCC--cccCEEEEEECCCCC--cceEEEcCcCCCCCEEEEEEEEecC
Confidence            46777754   565566678899999999998665  456777777666553  3333344679999998888877433

>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}

Probab=88.47  E-value=2.6  Score=37.27  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             cCCeEEEEE-------EEEc--eecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEE
Q 045101           20 RKPEASLSK-------FRLK--GVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVL   90 (153)
Q Consensus        20 ~~P~V~l~~-------v~~~--~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v   90 (153)
                      ..|.+.|.+       +.+.  .++...+++.+.+.|.|+..-+-  ..++.++.-+|+.+++...  ..++++.+...+
T Consensus       147 ~~~~~~I~~~~~~~~gv~v~~~~~~~~~a~v~v~~~~~~~~~~~~--~~v~~~l~d~g~~v~~~~~--~~~~~~~~~~~~  222 (667)
T 3cmg_A          147 ITDETCISPLDYASPGVYLVQEVVSPQEAKVCAKVNLSNRAADGT--AELQVLVTDGTKVICKESR--NVSLKQGADILE  222 (667)
T ss_dssp             EECSEEECSCSTTSCSEEEEEEEECSSEEEEEEEEEEEECSSSEE--EEEEEEEEETTEEEEEEEE--EEEECTTCEEEE
T ss_pred             EECCEEEeecccCCCceEEecccccCceEEEEEEEEEEcCCCCce--EEEEEEEECCCEEEEEEEE--EEEECCCCceEE
Confidence            356666664       4443  34555678889999998754321  3355555558888887653  356778777667


Q ss_pred             EEeEEEechhHHHHHHhhcCCCccceEEEEEEEE--------ccCcccceeeeeeeEeEEeCC
Q 045101           91 NVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLII--------DLPLIGNFTIPLSTQGEVKLP  145 (153)
Q Consensus        91 ~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~~--------~~p~~G~~~ip~~~~G~i~lp  145 (153)
                      .+.+.++-..+.    . +.+.+-=|+++..+..        ... +|-.++.++..+.+-|=
T Consensus       223 ~~~~~v~~p~LW----s-g~~~P~LY~l~~~l~~~g~~~D~~~~~-~G~R~i~~~~~~~f~lN  279 (667)
T 3cmg_A          223 QLPLLIQKPRLW----N-GCEDPFMYQVSISLHKDGKQIDSVTQP-LGLRYYHTDPDKGFFLN  279 (667)
T ss_dssp             EEEEEEESCCCB----C-GGGCBCCEEEEEEEEETTEEEEEEEEE-ECCCCEEEETTTEEEET
T ss_pred             EEEEEcCCCeeC----C-CCcCceeEEEEEEEEECCEEEEEEEEe-eeeEEEEEeCCCcEEEC
Confidence            766666643222    1 1345555888888732        244 78778877754445543

>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}

Probab=85.38  E-value=7.2  Score=26.97  Aligned_cols=85  Identities=16%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             CCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechh
Q 045101           21 KPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSV  100 (153)
Q Consensus        21 ~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~  100 (153)
                      .|++.++++.... --.+....+...|+|.-.-+  -....-.|++||..+......   .+.++.++.+.+.++.    
T Consensus         2 ~PDL~vt~itP~~-~~~~~~~ti~atVkN~G~~~--a~~~~V~ly~~g~~v~t~~v~---~LaaG~s~tv~~~w~~----   71 (114)
T 2l0d_A            2 IPDLVPVSLTPVT-VVPNTVNTMTATIENQGNKD--STSFNVSLLVDGIVVDTQTVT---SLESENSTNVDFHWTL----   71 (114)
T ss_dssp             CCCEEEEEEECSE-ECTTSEEEEEEEEEECSSSC--BCCEEEEEEETTEEEEEEEES---CBCBTCEEEEEEEEEC----
T ss_pred             CCCcEEEeccCCC-cCCCCeEEEEEEEEECCCCC--CCCEEEEEEECCEEEcceecc---cccCCCEEEEEEEEee----
Confidence            4788888886544 34667788889999998766  467888899999988877532   4788888888775421    


Q ss_pred             HHHHHHhhcCCCccceEEEEEEEE
Q 045101          101 LVSLVKDIARDWDIDYLLEVGLII  124 (153)
Q Consensus       101 l~~~~~~l~~~~~i~Y~l~g~l~~  124 (153)
                               ....=.|+|++.++-
T Consensus        72 ---------~~~~G~ytl~a~VD~   86 (114)
T 2l0d_A           72 ---------DGTANSYTLTVNVDP   86 (114)
T ss_dssp             ---------CCSCSEEEEEEEECT
T ss_pred             ---------cCcCceEEEEEEECC
Confidence                     112345888887764

>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3

Probab=84.16  E-value=1.5  Score=41.11  Aligned_cols=49  Identities=18%  Similarity=0.463  Sum_probs=42.1

Q ss_pred             EEEEECCCCCC-cccccEEEEEEECCEEEEEEECC----CCeeEeCCCeEEEEEe
Q 045101           44 DVSIDNPYSHS-IPICEISYVLKSDGRVIATGTIP----DPGSIKGNDKTVLNVP   93 (153)
Q Consensus        44 ~l~V~NPN~~~-L~i~~l~y~l~lng~~ia~G~~~----~~~~Ipa~g~~~v~vp   93 (153)
                      .++|.|-|.|. |.=..+.|+|..||+.+.+|...    . ..|+++++..+++|
T Consensus       625 ~~~v~N~~~f~~l~~~~~~w~~~~~g~~~~~g~~~~~~~~-~~~~p~~~~~~~l~  678 (1024)
T 1yq2_A          625 TLAVANLRHTADASDVVLRWRVEHDGAVAASGEVAAEGSD-GPLRAGESATIALP  678 (1024)
T ss_dssp             EEEEEECCSSCCSTTEEEEEEEEETTEEEEEEEEECBCSS-SBCCTTCEEEEECC
T ss_pred             eEEEEEccCCCCCccCeEEEEEEECCEEEEeeEEeccccC-ccCCCCCceEEEec
Confidence            48999999886 55557889999999999999983    3 58999999999998

>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis}

Probab=80.46  E-value=8  Score=34.51  Aligned_cols=116  Identities=14%  Similarity=0.183  Sum_probs=69.2

Q ss_pred             cCCeEEEEE-------EEEc--eecccceEEEEEEEEECCCCCCcccccEEEEEE-ECCEEEEEEECCCCeeEeCCCeEE
Q 045101           20 RKPEASLSK-------FRLK--GVSREGVDYLADVSIDNPYSHSIPICEISYVLK-SDGRVIATGTIPDPGSIKGNDKTV   89 (153)
Q Consensus        20 ~~P~V~l~~-------v~~~--~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~-lng~~ia~G~~~~~~~Ipa~g~~~   89 (153)
                      ..|++.|.+       +.+.  .++...+++.+.+.|.|+..-+-.+ .++++|. -+|+.+++..  ...++.+.++..
T Consensus       159 ~~~~~~I~~~~~~~~gv~v~~~~~~~~~a~v~v~~~v~n~~~~~~~~-~v~~~l~d~~g~~v~~~~--~~~~~~~~~~~~  235 (692)
T 3fn9_A          159 VTEQNNITVTDCASPGVYITQKDVSKKSADITVKVKLDNAGLQPAAV-TLENTIYTQEGQKVGTHS--RSFDLSPQGTQT  235 (692)
T ss_dssp             EECSEEECSCSTTCCSEEEEEESCSSSEEEEEEEEEEEECSSSCEEE-EEEEEEECTTSCEEEEEE--EEEEECSSSCEE
T ss_pred             EECCeEEecccccCCcEEEEeccccCCEEEEEEEEEEEeCCCCceeE-EEEEEEECCCCCEEEEEE--eEEEecCCCeEE
Confidence            356777765       3443  4555667889999999986443221 2333333 2466777663  235677777777


Q ss_pred             EEEeEEEechhHHHHHHhhcCCCccceEEEEEEE--------EccCcccceeeeeeeEeEEeC
Q 045101           90 LNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLI--------IDLPLIGNFTIPLSTQGEVKL  144 (153)
Q Consensus        90 v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~--------~~~p~~G~~~ip~~~~G~i~l  144 (153)
                      +.+.+.+.-..+.+     +.+.+-=|+|...+.        ...+ +|-.+|-++..+.+-|
T Consensus       236 ~~~~~~v~~p~LWs-----g~e~P~LY~l~v~l~~~g~~~D~~~~~-~GfR~ie~~~~~~f~l  292 (692)
T 3fn9_A          236 YLSTFKLKNPHLWQ-----GRKDPYLYKVVCRLMADGKVIDEVVQP-LGVRKYEIVAGKGFFL  292 (692)
T ss_dssp             EEEEEEEESCCCCC-----TTSCCCCEEEEEEEESSSSEEEEEEEE-ECCCCEEEETTTEEEE
T ss_pred             EEEEEEcCCceeCC-----CCcCcccEEEEEEEEECCEEEEEEEEE-ecceEEEEECCCceEE
Confidence            77777776432221     245555599988873        2245 7777787765433444

>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}

Probab=80.10  E-value=13  Score=25.93  Aligned_cols=92  Identities=12%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechhHHHHHHhhcCCCccceEEE
Q 045101           40 DYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLE  119 (153)
Q Consensus        40 ~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~  119 (153)
                      .+.+.+...|-.+.  +|.++.+.+-+---.=.+-......+||+++...++=.+++.-..       -..+..+.-|++
T Consensus        32 ~~~i~~~fsN~s~~--~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I~n~~-------~~~~~~lklR~k  102 (123)
T 3mnm_A           32 VIRIXSFFTNLSSS--PISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTIENAP-------ANPSKALXVKWK  102 (123)
T ss_dssp             CEEEEEEEEECSSS--CEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEEESCC-------CC---CCEEEEE
T ss_pred             eEEEEEEEecCCCC--ccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEEecCC-------CCCCCCEEEEEE
Confidence            46677888886654  699999998887665555555666789998544444444443210       011345555555


Q ss_pred             EEEEEccCcccceeeeeeeEeEEeCCCC
Q 045101          120 VGLIIDLPLIGNFTIPLSTQGEVKLPTL  147 (153)
Q Consensus       120 g~l~~~~p~~G~~~ip~~~~G~i~lp~l  147 (153)
                      ....+     |.  -|+++.|++.||..
T Consensus       103 lsY~~-----~g--~~~~E~g~~~lp~~  123 (123)
T 3mnm_A          103 VNYSV-----NS--TQAEETAVFTLPNV  123 (123)
T ss_dssp             EEEEE-----TT--EEEEEEEEEECCCC
T ss_pred             EEEEE-----CC--eEEEEEEEEecCCC
Confidence            55553     32  47999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	153
d1xo8a_	151	b.1.25.1 (A:) Putative dessication related protein	9e-61

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 151

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  182 bits (464), Expect = 9e-61
 Identities = 89/151 (58%), Positives = 117/151 (77%)

Query: 1   MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEI 60
           MA L+DKAK++V DK+T + KPE S++   LK V+R+ V+YLA VS+ NPYSHSIPICEI
Sbjct: 1   MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEI 60

Query: 61  SYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEV 120
           S+   S GR I  G IPDPGS+K  D T L++PV VP+S+L +L +D+  DWDIDY L++
Sbjct: 61  SFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQI 120

Query: 121 GLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF 151
           GL IDLP++G FTIP+S++GE+KLPT  DFF
Sbjct: 121 GLTIDLPVVGEFTIPISSKGEIKLPTFKDFF 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	100.0
d1jz8a2	105	beta-Galactosidase, domains 2 and 4 {Escherichia c	96.0
d1yq2a1	112	beta-Galactosidase, domains 2 and 4 {Arthrobacter	91.25
d1ex0a3	100	Transglutaminase, two C-terminal domains {Human (H	89.68
d2co7b2	85	Periplasmic chaperone SafB {Salmonella typhimurium	89.46
d1l4ia2	85	SfaE {Escherichia coli [TaxId: 562]}	89.38
d3bwuc2	84	FimC {Escherichia coli [TaxId: 562]}	89.06
d1p5va2	86	Caf1m {Yersinia pestis [TaxId: 632]}	88.7
d2je8a1	111	Beta-mannosidase, domains 2, 4 and 5 {Bacteroides	85.75
d1g0da3	101	Transglutaminase, two C-terminal domains {Red sea	82.61

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.6e-53  Score=317.92  Aligned_cols=151  Identities=59%  Similarity=1.066  Sum_probs=149.7

Q ss_pred             CchhhHHhhhhHhhhhcCccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCe
Q 045101            1 MAQLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPG   80 (153)
Q Consensus         1 ~~~~~~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~   80 (153)
                      |||||||||+|++||++++++|+|+++++++.++++++++|.++++|+|||+++|++++++|+|++||+++++|.+++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~kPev~l~~v~i~~v~~~~~~l~~~l~V~NPN~~~l~i~~l~y~l~~~g~~ia~G~~~~~~   80 (151)
T d1xo8a_           1 MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPG   80 (151)
T ss_dssp             CTTSCSCCCTTCSSSCCCCCSCCCBCSEEEECCCTTTEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECC
T ss_pred             ChhHHHHHHHHHHHHhcCCCCCeEEEEEEEeeecccceEEEEEEEEEECCCCCceeeeeEEEEEEECCEEEEeEecCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeCCCeEEEEEeEEEechhHHHHHHhhcCCCccceEEEEEEEEccCcccceeeeeeeEeEEeCCCCcccc
Q 045101           81 SIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTDFF  151 (153)
Q Consensus        81 ~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~~~~p~~G~~~ip~~~~G~i~lp~l~~~~  151 (153)
                      +|||++++.++||++++|.++.++++++.+++.++|+++|++++++|++|.+++||+++||++||+|||||
T Consensus        81 ~ipa~~~~~v~vpv~v~~~~l~~~~~~i~~~~~i~Y~l~g~l~~d~pv~G~~tiP~~~~Gei~lP~l~d~~  151 (151)
T d1xo8a_          81 SLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLPVVGEFTIPISSKGEIKLPTFKDFF  151 (151)
T ss_dssp             CCSSSSEEEEEECCCEEHHHHHHHHHHHHHHSEEEEEEEEEEEECCTTTSSEEEEEEEEEEEECCSCSSCC
T ss_pred             EEcCCCcEEEEEEEEEEHHHHHHHHHhhccCCCccEEEEEEEEEecCccCceEeeeccCCEEECCcccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998

>d1jz8a2 b.1.4.1 (A:626-730) beta-Galactosidase, domains 2 and 4 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: beta-Galactosidase/glucuronidase domain
family: beta-Galactosidase/glucuronidase domain
domain: beta-Galactosidase, domains 2 and 4
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0065  Score=40.11  Aligned_cols=49  Identities=16%  Similarity=0.402  Sum_probs=41.4

Q ss_pred             EEEEECCCCCC-cccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101           44 DVSIDNPYSHS-IPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV   94 (153)
Q Consensus        44 ~l~V~NPN~~~-L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv   94 (153)
                      .++|+|-|.|- +.=-.+.|.+..||+.+.+|..+  ..|+|+++..+.+|.
T Consensus        10 ~v~V~N~~~F~~l~~~~l~w~l~~dG~~i~sg~~~--l~i~P~~s~~i~lp~   59 (105)
T d1jz8a2          10 TIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVP--LDVAPQGKQLIELPE   59 (105)
T ss_dssp             EEEEEECCSSCCCTTCEEEEEEEETTEEEEEEEEE--CCCCTTCEEEEECCC
T ss_pred             EEEEEEEeecccCCCcEEEEEEEECCEEEecceEc--cccCCCccEEEEcCC
Confidence            58999999994 44346999999999999999985  469999999998874

>d1yq2a1 b.1.4.1 (A:610-721) beta-Galactosidase, domains 2 and 4 {Arthrobacter sp. c2-2 [TaxId: 192168]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: beta-Galactosidase/glucuronidase domain
family: beta-Galactosidase/glucuronidase domain
domain: beta-Galactosidase, domains 2 and 4
species: Arthrobacter sp. c2-2 [TaxId: 192168]

Probab=91.25  E-value=0.14  Score=33.50  Aligned_cols=50  Identities=14%  Similarity=0.373  Sum_probs=36.1

Q ss_pred             EEEEECCCCC-CcccccEEEEEEECCEEEEEEECCCC-ee--EeCCCeEEEEEe
Q 045101           44 DVSIDNPYSH-SIPICEISYVLKSDGRVIATGTIPDP-GS--IKGNDKTVLNVP   93 (153)
Q Consensus        44 ~l~V~NPN~~-~L~i~~l~y~l~lng~~ia~G~~~~~-~~--Ipa~g~~~v~vp   93 (153)
                      .++|+|-|.| .+.=-.++|+|..||+.+.+|...-+ ..  +.+..+..+.+|
T Consensus        15 ~v~V~N~~~F~~l~~~~~~w~l~~dG~~i~sG~l~~~~~~~~~~~~~s~~i~lp   68 (112)
T d1yq2a1          15 TLAVANLRHTADASDVVLRWRVEHDGAVAASGEVAAEGSDGPLRAGESATIALP   68 (112)
T ss_dssp             EEEEEECCSSCCSTTEEEEEEEEETTEEEEEEEEECBCSSSBCCTTCEEEEECC
T ss_pred             EEEEEEccccCcccCcEEEEEEEECCeEEEcceEecCccccCCCCCEEEEEeCC
Confidence            5899999996 46656789999999999999987532 33  444444444444

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=89.68  E-value=0.22  Score=32.40  Aligned_cols=67  Identities=18%  Similarity=0.237  Sum_probs=46.6

Q ss_pred             CeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEE
Q 045101           22 PEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVK   95 (153)
Q Consensus        22 P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~   95 (153)
                      |+++++   +.+-..-+..+.+.++.+||-+.+  +.+..+.++--|..  ....-.-..|+++++..+++.++
T Consensus         3 P~l~I~---v~g~~~v~~~~~v~v~F~NPL~~~--L~nc~~~vEG~GL~--~~~~~~~~~v~p~~~~~~~~~~~   69 (100)
T d1ex0a3           3 PEIIIK---VRGTQVVGSDMTVTVQFTNPLKET--LRNVWVHLDGPGVT--RPMKKMFREIRPNSTVQWEEVCR   69 (100)
T ss_dssp             CCCEEE---EEECCBTTSCEEEEEEEECCSSSC--EEEEEEEEEETTTE--EEEEEEEEEECTTCEEEEEEEEC
T ss_pred             CcEEEE---eCCCcccCCeEEEEEEEECCCCCc--hhCEEEEEEcCCCc--eeeEEecCccCCCCEEEEEEEEe
Confidence            555443   445556778899999999987665  45666666666654  44444556899999988888763

>d2co7b2 b.7.2.1 (B:136-220) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: C2 domain-like
superfamily: Periplasmic chaperone C-domain
family: Periplasmic chaperone C-domain
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.46  E-value=0.14  Score=32.27  Aligned_cols=41  Identities=17%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             EEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101           45 VSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV   94 (153)
Q Consensus        45 l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv   94 (153)
                      |.|.||-|+=+.+..    +.++|+.+.     +...|+++++..+.++-
T Consensus        20 l~v~NpsPyyvt~~~----l~~~~~~~~-----~~~mv~P~s~~~~~~~~   60 (85)
T d2co7b2          20 LKVENPTPFYMNLAS----VTVGGKPIT-----GLEYVPPFADKTLNMPG   60 (85)
T ss_dssp             EEEEECSSSCBCEEE----EEETTEECC-----CCCCBCTTEEEEEC---
T ss_pred             EEEECCCCCEEEEEE----EEECCEEcC-----CCcEECCCCceEEecCC
Confidence            899999999999977    567998764     45689999999887764

>d1l4ia2 b.7.2.1 (A:121-205) SfaE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: C2 domain-like
superfamily: Periplasmic chaperone C-domain
family: Periplasmic chaperone C-domain
domain: SfaE
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.15  Score=32.19  Aligned_cols=41  Identities=17%  Similarity=0.377  Sum_probs=32.6

Q ss_pred             EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101           44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV   94 (153)
Q Consensus        44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv   94 (153)
                      .|.|.||-|+=+.+.+    +.++|+.+      +...|+++++..+.++-
T Consensus        19 ~l~v~NpTPy~vt~~~----l~~~~~~i------~~~mi~P~s~~~~~l~~   59 (85)
T d1l4ia2          19 GLTLFNPTPYYLTVTD----LKAGNKSL------ENTMVPPQGKVTVNIPG   59 (85)
T ss_dssp             -CEEECCSSSCEEEEE----EEETTEEC------CCEEECTTCEEECCC--
T ss_pred             EEEEECCCCCEEEEEE----EEECCEEC------CccEECCCCceEEECCC
Confidence            3888999999999975    56899986      35789999999998764

>d3bwuc2 b.7.2.1 (C:122-205) FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: C2 domain-like
superfamily: Periplasmic chaperone C-domain
family: Periplasmic chaperone C-domain
domain: FimC
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=0.22  Score=31.18  Aligned_cols=40  Identities=15%  Similarity=0.385  Sum_probs=33.0

Q ss_pred             EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101           44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP   93 (153)
Q Consensus        44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp   93 (153)
                      .|.|.||-|+=+.+.++    .++|+.+      +...|+++++..+.++
T Consensus        18 ~l~v~NptPyyvtl~~l----~~~~~~~------~~~mi~P~s~~~~~~~   57 (84)
T d3bwuc2          18 SLTLINPTPYYLTVTEL----NAGTRVL------ENALVPPMGESTVKLP   57 (84)
T ss_dssp             EEEEEECSSSCEEEEEE----EETTEEC------CCEEECTTEEEEEECC
T ss_pred             EEEEECCCCCEEEEEEE----EECCEEC------CCcEECCCCccEEEcC
Confidence            48899999999999765    5788875      3578999999988765

>d1p5va2 b.7.2.1 (A:148-233) Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: C2 domain-like
superfamily: Periplasmic chaperone C-domain
family: Periplasmic chaperone C-domain
domain: Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=88.70  E-value=0.22  Score=31.29  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=34.1

Q ss_pred             EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101           44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV   94 (153)
Q Consensus        44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv   94 (153)
                      .|.|.||-|+=+.+.++    .++|+.+      +...|+++++..+.++-
T Consensus        19 ~l~v~NpTPyyvt~~~l----~~~~~~~------~~~mi~P~s~~~~~l~~   59 (86)
T d1p5va2          19 KLIAENPSPFYMNIGEL----TFGGKSI------PSHYIPPKSTWAFDLPK   59 (86)
T ss_dssp             EEEEEECSSSCEEEEEE----EETTEEC------CCCEECTTEEEEEECC-
T ss_pred             EEEEECCCCCEEEEEEE----EECCEEC------CCCEECCCCccEEEcCC
Confidence            48899999999999975    5799876      24689999999988874

>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: beta-Galactosidase/glucuronidase domain
family: beta-Galactosidase/glucuronidase domain
domain: Beta-mannosidase, domains 2, 4 and 5
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=85.75  E-value=2.8  Score=26.31  Aligned_cols=94  Identities=10%  Similarity=0.187  Sum_probs=63.3

Q ss_pred             EEEEEEEc--eecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechhHH
Q 045101           25 SLSKFRLK--GVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLV  102 (153)
Q Consensus        25 ~l~~v~~~--~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~  102 (153)
                      .+.++.+.  .++...+++.+.+.|.|..+.+... .++..+..+|..+++..  +...+.++ +..+++++.+.-.   
T Consensus         3 ~I~D~~i~~~~~~~~~A~l~~~~~l~n~~~~~~~~-~v~~~i~~~~~~~~~~~--~~~~~~~~-~~~v~~~~~i~~p---   75 (111)
T d2je8a1           3 TISDYYVRQLSLTDENARLSNELIVNQIVPQKIPA-EVRVNVSLNGTTVTEVK--QQVTLQPG-INHITLPAEVTNP---   75 (111)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEEEEEECSSSCEEE-EEEEEEEETTEEEEEEE--EEEEECSE-EEEEEEEEEEESC---
T ss_pred             EEEEEEEecCccCCcEEEEEEEEEEEeCCCCceEE-EEEEEEecCCcEEEEEE--EEEEeccc-ccEEEEEEEeCCc---
Confidence            46666665  4456678899999999998887763 46778889999988876  33455554 5678888877643   


Q ss_pred             HHHHhhcCCCccceEEEEEEEEc
Q 045101          103 SLVKDIARDWDIDYLLEVGLIID  125 (153)
Q Consensus       103 ~~~~~l~~~~~i~Y~l~g~l~~~  125 (153)
                      .+|.--.-+.+-=|+++..+..+
T Consensus        76 ~LW~P~g~g~P~LY~~~v~l~~~   98 (111)
T d2je8a1          76 VRWMPNGWGTPTLYDFSAQIACG   98 (111)
T ss_dssp             CCBCCTTSSCBCCEEEEEEEEET
T ss_pred             cCcCCCCCCCCceEEEEEEEEEC
Confidence            22210001245569999998753

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=82.61  E-value=0.38  Score=31.23  Aligned_cols=66  Identities=20%  Similarity=0.195  Sum_probs=43.1

Q ss_pred             EceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEech
Q 045101           31 LKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHS   99 (153)
Q Consensus        31 ~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~   99 (153)
                      +.+-.-.+..+.+.++.+||-+.+|  .+..+.++--|..=..- ......|+++++..+++.++=...
T Consensus         8 v~g~~~v~~~~~v~vsf~NPL~~~L--~~c~~~vEG~GL~~~~~-~~~~~~v~p~~~~~~~~~~~P~~~   73 (101)
T d1g0da3           8 VPGKAVVWEPLTAYVSFTNPLPVPL--KGGVFTLEGAGLLSATQ-IHVNGAVAPSGKVSVKLSFSPMRT   73 (101)
T ss_dssp             CCSCEETTCCEEEEEEEECCSSSCE--ESCEEEEEETTTEEEEE-EECSSEECTTCEEEEEEEECCSSC
T ss_pred             eCCCcCcCCeEEEEEEEECCCCCee--cCEEEEEEcCCCCcccE-EEecCCcCCCCEEEEEEEEEcCCc
Confidence            4444456678999999999876654  56666666666422222 233468999999888887743333