Citrus Sinensis ID: 045129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSSQSLFHEEQTEQQLFISTP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccccccccccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
MASKWEIFAVIKRkgislpnneaglvngTAQLAYKGHFVVYTTDQARFLIPLEYlskrifreplklsevefgleidgpitlpcdasFMEYVILFLQRGGDKNVETFLLMSVVTscdssqslfhEEQTEqqlfistp
Flexible Loop (DISEMBL)
MASKWEIFAVIkrkgislpnnEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSSQslfheeqteqqlfistp
Low Complexity Region (SEG)
MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSSQSLFHEEQTEQQLFISTP
Disordered region (IsUnstruct)
****WEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSC*********************
Disordered Region (DISOPRED)
MASKW***************************AYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFL***********LLMSVV*****************QLFIST*
Disordered Region (DISEMBL)
MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTS**********************
Disordered Region (DISPRO)
*****EIFAVIK*********************YKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSSQSL*****TEQ****S**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSSQSLFHEEQTEQQLFISTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.455	0.688	0.359	0.0002
P33080	92	Auxin-induced protein X10	no	no	0.360	0.532	0.450	0.0006

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 35 KGHFVVYTTDQAR-FLIPLEYLSKRIFREPLKLSEVEFGL-EIDGPITLPCDASFMEYVI 92
          KG+  VY  ++ R F+IP+ YL+K  F++ L  +E EFG    +G +T+PC     +++ 
Sbjct: 27 KGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHIT 86

Query: 93 LFLQ 96
           FL 
Sbjct: 87 SFLN 90

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 35 KGHFVVYTTDQAR-FLIPLEYLSKRIFREPLKLSEVEFGLEID-GPITLPC 83
          KG+ VVY  D+ R FLIP+ YL++  F++ L  +E EFG +   G +T+PC
Sbjct: 27 KGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPC 77

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
297744514	142	unnamed protein product [Vitis vinifera]	0.970	0.929	0.533	4e-32
225428294	146	PREDICTED: auxin-induced protein 6B-like	0.970	0.904	0.525	5e-31
225428209	178	PREDICTED: uncharacterized protein LOC10	0.985	0.752	0.510	6e-31
297744481	290	unnamed protein product [Vitis vinifera]	0.970	0.455	0.525	9e-31
147854986	137	hypothetical protein VITISV_032217 [Viti	0.985	0.978	0.510	9e-31
297744511	148	unnamed protein product [Vitis vinifera]	0.992	0.912	0.507	1e-30
359474805	171	PREDICTED: uncharacterized protein LOC10	0.992	0.789	0.507	1e-30
225428225	148	PREDICTED: uncharacterized protein LOC10	0.977	0.898	0.5	2e-30
225428229	148	PREDICTED: uncharacterized protein LOC10	0.992	0.912	0.507	3e-30
147854983	139	hypothetical protein VITISV_032214 [Viti	0.977	0.956	0.492	2e-29

>gi|297744514|emb|CBI37776.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 92/135 (68%), Gaps = 3/135 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIF 60
           MA KW+  A ++RK ISLP  +  L     +LA KGHFVVYTTD+ RF+IPL YLS  I 
Sbjct: 10  MARKWQKMAAMRRKRISLPRTDEVL--DADRLADKGHFVVYTTDKRRFMIPLAYLSNNIL 67

Query: 61  REPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSSQS 120
           RE  K++E EFGL+ +GPITLPCD+ FMEY++  +QRG  K+VE  LL S+ TSC S  S
Sbjct: 68  RELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSLATSCCSLLS 127

Query: 121 LFHEEQTEQQLFIST 135
             H+E   QQL + +
Sbjct: 128 -SHQEHISQQLLVCS 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428294|ref|XP_002282698.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 91/135 (67%), Gaps = 3/135 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGLVNGTAQ--LAYKGHFVVYTTDQARFLIPLEYLSKR 58
           MA KW+  A + RK IS P  +A +  GT    +A KGHFVVY TD+ RF+IPL YLS  
Sbjct: 10  MARKWQRRAALGRKRISSPRTDADMDAGTCSTSVADKGHFVVYPTDKRRFMIPLVYLSNN 69

Query: 59  IFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSS 118
           IFRE  K+SE EFGL+ DGPITLPCD+ FM+Y++  +QRG  K++E  L+ S+VTS   S
Sbjct: 70  IFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALIFSLVTS-RCS 128

Query: 119 QSLFHEEQTEQQLFI 133
           QS  H+E   Q L +
Sbjct: 129 QSSSHQEHISQHLLV 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428209|ref|XP_002279108.1| PREDICTED: uncharacterized protein LOC100264057 [Vitis vinifera]

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 91/137 (66%), Gaps = 3/137 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGLV--NGTAQLAYKGHFVVYTTDQARFLIPLEYLSKR 58
           MA KW+  A + RK IS P  +  +   N +  +A KGHFVVYTTD+ RF+IPL YLS  
Sbjct: 42  MARKWQRIAALGRKTISSPRTKVDVDADNCSTSVADKGHFVVYTTDKRRFMIPLAYLSNN 101

Query: 59  IFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSS 118
           I RE  K++E EFGL+ +GPITLPCD+ FMEY++  +QRG  K+VE  LL S+ TSC S 
Sbjct: 102 ILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSLATSCCSL 161

Query: 119 QSLFHEEQTEQQLFIST 135
            S  H+E   QQL + +
Sbjct: 162 LS-SHQEHISQQLLVCS 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744481|emb|CBI37743.3| unnamed protein product [Vitis vinifera]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 91/135 (67%), Gaps = 3/135 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGLVNGTAQ--LAYKGHFVVYTTDQARFLIPLEYLSKR 58
           MA KW+  A + RK IS P  +A +  GT    +A KGHFVVY TD+ RF+IPL YLS  
Sbjct: 10  MARKWQRRAALGRKRISSPRTDADMDAGTCSTSVADKGHFVVYPTDKRRFMIPLVYLSNN 69

Query: 59  IFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSS 118
           IFRE  K+SE EFGL+ DGPITLPCD+ FM+Y++  +QRG  K++E  L+ S+VTS   S
Sbjct: 70  IFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALIFSLVTS-RCS 128

Query: 119 QSLFHEEQTEQQLFI 133
           QS  H+E   Q L +
Sbjct: 129 QSSSHQEHISQHLLV 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854986|emb|CAN82401.1| hypothetical protein VITISV_032217 [Vitis vinifera]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 91/137 (66%), Gaps = 3/137 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGLV--NGTAQLAYKGHFVVYTTDQARFLIPLEYLSKR 58
           MA KW+  A + RK IS P  +  +   N +  +A KGHFVVYTTD+ RF+IPL YLS  
Sbjct: 1   MARKWQRIAALGRKTISSPRTKVDVDADNCSTSVADKGHFVVYTTDKRRFMIPLAYLSNN 60

Query: 59  IFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSS 118
           I RE  K++E EFGL+ +GPITLPCD+ FMEY++  +QRG  K+VE  LL S+ TSC S 
Sbjct: 61  ILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSLATSCCSL 120

Query: 119 QSLFHEEQTEQQLFIST 135
            S  H+E   QQL + +
Sbjct: 121 LS-SHQEHISQQLLVCS 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744511|emb|CBI37773.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 91/138 (65%), Gaps = 3/138 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGLVNG---TAQLAYKGHFVVYTTDQARFLIPLEYLSK 57
           MA +W+  A I+RK ISLP     L  G   T+ +A KGHFVVYT DQ RF+IP+ YL+ 
Sbjct: 10  MAREWQKVAAIRRKRISLPRTHQDLDAGYCSTSSVADKGHFVVYTADQRRFMIPIVYLNS 69

Query: 58  RIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDS 117
           +IFRE  ++SE EFGL  DGPITLPCD+ FMEY+I  +QRG  K++E  LL SV  +  S
Sbjct: 70  KIFRELFEMSEAEFGLPSDGPITLPCDSFFMEYIIFLVQRGVAKDLEKALLTSVAYTQSS 129

Query: 118 SQSLFHEEQTEQQLFIST 135
           S    H+EQ   +L + +
Sbjct: 130 SSFFSHQEQMNSRLLVCS 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474805|ref|XP_002279233.2| PREDICTED: uncharacterized protein LOC100260607 [Vitis vinifera]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 91/138 (65%), Gaps = 3/138 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGLVNG---TAQLAYKGHFVVYTTDQARFLIPLEYLSK 57
           MA +W+  A I+RK ISLP     L  G   T+ +A KGHFVVYT DQ RF+IP+ YL+ 
Sbjct: 33  MAREWQKVAAIRRKRISLPRTHQDLDAGYCSTSSVADKGHFVVYTADQRRFMIPIVYLNS 92

Query: 58  RIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDS 117
           +IFRE  ++SE EFGL  DGPITLPCD+ FMEY+I  +QRG  K++E  LL SV  +  S
Sbjct: 93  KIFRELFEMSEAEFGLPSDGPITLPCDSFFMEYIIFLVQRGVAKDLEKALLTSVAYTQSS 152

Query: 118 SQSLFHEEQTEQQLFIST 135
           S    H+EQ   +L + +
Sbjct: 153 SSFFSHQEQMNSRLLVCS 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428225|ref|XP_002282054.1| PREDICTED: uncharacterized protein LOC100253806 [Vitis vinifera]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 92/136 (67%), Gaps = 3/136 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGL---VNGTAQLAYKGHFVVYTTDQARFLIPLEYLSK 57
           MA KW+  A + RK ISL     G+      T+ +A KGHFVVY++D+ RF+IPL YL+ 
Sbjct: 10  MARKWQKMAALGRKRISLQRINKGVNEDCCSTSSVADKGHFVVYSSDRRRFVIPLAYLNS 69

Query: 58  RIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDS 117
            IFRE  ++SE EFG++  GPI LPCD+ F++YVI F+QRG  K +E  L+MS+  S  S
Sbjct: 70  EIFRELFQMSEEEFGIQSAGPIILPCDSVFLDYVISFIQRGVAKELERALIMSIAPSNCS 129

Query: 118 SQSLFHEEQTEQQLFI 133
           S S FH+EQT +QL +
Sbjct: 130 SSSYFHQEQTNEQLLL 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428229|ref|XP_002279305.1| PREDICTED: uncharacterized protein LOC100267542 [Vitis vinifera]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 89/138 (64%), Gaps = 3/138 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGLVNG---TAQLAYKGHFVVYTTDQARFLIPLEYLSK 57
           MA +W+  A I+RK ISLP     L  G   T+ +A KGHFVVYT DQ RF+IPL YL+ 
Sbjct: 10  MAREWQKVAAIRRKRISLPRTSQYLGAGHCSTSSVADKGHFVVYTADQRRFMIPLVYLNS 69

Query: 58  RIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDS 117
            IFRE  ++SE EFGL  DGPITLPCD+ FMEY++  +QRG  KN+E  LL SV  +  S
Sbjct: 70  EIFRELFEMSEEEFGLPSDGPITLPCDSFFMEYILFLVQRGVAKNLEKALLTSVAHTQSS 129

Query: 118 SQSLFHEEQTEQQLFIST 135
           S     +EQ   +L + +
Sbjct: 130 SAIFSQQEQMNSRLLVCS 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854983|emb|CAN82398.1| hypothetical protein VITISV_032214 [Vitis vinifera]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 90/136 (66%), Gaps = 3/136 (2%)

Query: 1   MASKWEIFAVIKRKGISLPNNEAGLVN---GTAQLAYKGHFVVYTTDQARFLIPLEYLSK 57
           MA KW+  A + RK ISL     G+      T+ +A KGHFVVY++D+ RF+IPL YL  
Sbjct: 1   MARKWQKMAALGRKRISLQRINEGVDEESCSTSSVADKGHFVVYSSDRRRFVIPLAYLDS 60

Query: 58  RIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDS 117
            I RE  ++SE EFG++  GPI LPCD+ F++YVI F+QRG  K +E  L+MS+  S  S
Sbjct: 61  EIMRELFQMSEEEFGIQSTGPIILPCDSVFLDYVISFIQRGVAKELERALIMSIAPSNCS 120

Query: 118 SQSLFHEEQTEQQLFI 133
           S S FH+EQT +QL +
Sbjct: 121 SSSYFHQEQTNEQLLL 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2013608	141	AT1G29450 "AT1G29450" [Arabido	0.955	0.921	0.477	2.6e-24
TAIR|locus:2013703	143	SAUR68 "AT1G29510" [Arabidopsi	0.963	0.916	0.447	6.8e-24
TAIR|locus:2013593	141	AT1G29430 "AT1G29430" [Arabido	0.948	0.914	0.458	1e-22
TAIR|locus:2013598	141	SAUR63 "AT1G29440" [Arabidopsi	0.963	0.929	0.406	9e-22
TAIR|locus:2013618	148	AT1G29460 "AT1G29460" [Arabido	0.977	0.898	0.427	1.1e-21
TAIR|locus:2180270	142	SAUR75 "AT5G27780" [Arabidopsi	0.955	0.915	0.435	6.3e-21
TAIR|locus:2013753	141	AT1G29420 "AT1G29420" [Arabido	0.948	0.914	0.424	1e-20
TAIR|locus:2013698	135	AT1G29500 "AT1G29500" [Arabido	0.897	0.903	0.433	5.7e-20
TAIR|locus:2013653	102	AT1G29490 "AT1G29490" [Arabido	0.610	0.813	0.470	2.6e-15
TAIR|locus:2199819	123	AT1G76190 "AT1G76190" [Arabido	0.713	0.788	0.373	1.4e-14

TAIR|locus:2013608 AT1G29450 "AT1G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/134 (47%), Positives = 84/134 (62%)

Query:     1 MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIF 60
             MA KW+  A + RK IS   + +   + TA  A KG FVVYTTD  RF  PL YLS  +F
Sbjct:    10 MAKKWQQRAALHRKRISFQRSSSA-TSSTA--AEKGCFVVYTTDSTRFAFPLSYLSNSVF 66

Query:    61 REPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTS-CDSSQ 119
             +E LK+SE EFGL   GPIT P D+ F+EY+I  +QR  D + E  LLMS+ ++ C S  
Sbjct:    67 QELLKISEEEFGLPTGGPITSPFDSVFLEYLIKLVQRRMDADTEKALLMSISSARCSSQC 126

Query:   120 SLFHEEQTEQQLFI 133
             SL  +E++ QQL +
Sbjct:   127 SLKLQERSTQQLLV 140

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013703 SAUR68 "AT1G29510" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 60/134 (44%), Positives = 82/134 (61%)

Query:     1 MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIF 60
             MA KW+  A + RK IS     + +   ++    KG FVVYT D+ RF  P+ YLS  I 
Sbjct:    11 MAKKWQQRAALHRKRISF--QRSNVFTSSSSTVEKGCFVVYTADKIRFAFPISYLSNSIV 68

Query:    61 REPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTS-CDSSQ 119
             +E LK+SE EFGL  +GPITLP D+ F+EY+I  +QR  D + E  LLMS+ ++ C    
Sbjct:    69 QELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDGDTEKALLMSISSAKCSLQC 128

Query:   120 SLFHEEQTEQQLFI 133
             SL  +EQ+ QQL +
Sbjct:   129 SLLQQEQSTQQLLV 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013593 AT1G29430 "AT1G29430" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 60/131 (45%), Positives = 81/131 (61%)

Query:     1 MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIF 60
             +A KW+  A +KRK IS   +     + TA    KG FVVYT D+ RF  PL YLS  I 
Sbjct:    11 LAKKWQQRAALKRKRISFQRSSITTSSQTA--VEKGCFVVYTADKIRFSFPLSYLSNTIV 68

Query:    61 REPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSSQS 120
             +E LK+SE EFGL  +GPITLP D++F+EY+I  +QR  D++ E  LL+S+ ++  S Q 
Sbjct:    69 QELLKISEEEFGLPTEGPITLPFDSAFLEYLINLIQRRMDEDTEKALLLSISSARSSFQP 128

Query:   121 LFHEEQTEQQL 131
               H   T+Q L
Sbjct:   129 QQHCSATQQLL 139

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013598 SAUR63 "AT1G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 54/133 (40%), Positives = 81/133 (60%)

Query:     1 MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIF 60
             MA KW+  A + RK IS     + +   ++    KG FVVYT D+ RF  P+ YLS  + 
Sbjct:    10 MAKKWQQRAALHRKRISF--QRSSVFTSSSSTVEKGCFVVYTADKIRFAFPISYLSNSVV 67

Query:    61 REPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSSQS 120
             +E LK+SE +FGL  +GPITLP D++F+EY++  +QR  D++ E  LL+S+ ++  S Q 
Sbjct:    68 QELLKISEEDFGLPTEGPITLPFDSAFLEYLVKLIQRRMDEDTEKALLLSISSARCSFQP 127

Query:   121 LFHEEQTEQQLFI 133
                +  T QQL +
Sbjct:   128 QEQQCSTTQQLLV 140

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009926 "auxin polar transport" evidence=IDA

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2013618 AT1G29460 "AT1G29460" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 59/138 (42%), Positives = 78/138 (56%)

Query:     1 MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAY-----KGHFVVYTTDQARFLIPLEYL 55
             MA KW+  A +KRK IS   +       T   +      KG FVVYT D+ RF  PL YL
Sbjct:    10 MAKKWQQRAALKRKRISFQRSTTTTTTTTTTTSSSTAVEKGCFVVYTVDKIRFAFPLSYL 69

Query:    56 SKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSC 115
             +  +F E LK+SE EFGL   GPITLP D+ F+EY+I F++R  D + E  LLMS+ ++ 
Sbjct:    70 NNSVFEELLKISEEEFGLRAGGPITLPFDSVFLEYLIKFIERRMDGDTEKALLMSISSAR 129

Query:   116 DSSQSLFHEEQTEQQLFI 133
              S Q    +    QQL +
Sbjct:   130 CSMQPQEQQSGYTQQLLV 147

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180270 SAUR75 "AT5G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 57/131 (43%), Positives = 77/131 (58%)

Query:     1 MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIF 60
             +A  W+  A +KRK IS   +     +    +  KG FVVYT D+ RF  PL YLS  I 
Sbjct:    11 LAKTWQQRAALKRKRISFQRSSITTTSSQTTVE-KGCFVVYTADKIRFSFPLSYLSNTIV 69

Query:    61 REPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTSCDSSQS 120
             +E LK+SE EFGL  +GPITLP D+ F+EY+I  +QR  D++ E  LL S+ ++  S Q 
Sbjct:    70 QELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDEDTEKALLWSISSARCSLQP 129

Query:   121 LFHEEQTEQQL 131
               H   T+Q L
Sbjct:   130 QQHCSATQQLL 140

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013753 AT1G29420 "AT1G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 56/132 (42%), Positives = 79/132 (59%)

Query:     1 MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIF 60
             MA KW+  A ++RK IS   +     + TA  A KG FVVYT+D+ RF  P+ YLS  + 
Sbjct:    10 MAKKWQQRAALRRKRISFHRSTDTTSSSTA--AEKGCFVVYTSDRIRFAFPISYLSNSVI 67

Query:    61 REPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVV-TSCDSSQ 119
             +E LK+SE EFG+  +GPITLP D+ F+EY+I  +QR  D + E  L+ S+  T C    
Sbjct:    68 QELLKISEEEFGIPTEGPITLPFDSVFLEYLIRLVQRRMDGDTEKALITSISSTRCSLPC 127

Query:   120 SLFHEEQTEQQL 131
             S   +E +  +L
Sbjct:   128 SFQLQEHSSTRL 139

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013698 AT1G29500 "AT1G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 59/136 (43%), Positives = 80/136 (58%)

Query:     1 MASKWEIFAVIKRKGISL--PNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKR 58
             M  KW+  A + RK IS   P+  +  V        KG FVVYT D  RF  P+ YLS  
Sbjct:    10 MFRKWQQRAALHRKRISFQRPSTRSTTVE-------KGCFVVYTADNTRFAFPISYLSNS 62

Query:    59 IFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDKNVETFLLMSVVTS-CDS 117
             +F+E L++SE EFGL   GPITLP D+ F+EY+I  ++R  D + E  LLMS+ ++ C  
Sbjct:    63 VFQEILEISEEEFGLPTGGPITLPFDSVFLEYLIKLIKRRMDGDTEKALLMSISSARC-- 120

Query:   118 SQSLFHEEQTEQQLFI 133
               SL  +EQ+ QQL +
Sbjct:   121 --SLQKQEQSTQQLLV 134

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2013653 AT1G29490 "AT1G29490" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 40/85 (47%), Positives = 54/85 (63%)

Query:     1 MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTDQARFLIPLEYLSKRIF 60
             MA KW+  A ++RK IS   + +   + +A    KG FVVYT DQ RF  P+ YLS  + 
Sbjct:    10 MAKKWQQRAALRRKRISFQRSNSTTSSSSA--VEKGCFVVYTADQVRFAFPISYLSNSVI 67

Query:    61 REPLKLSEVEFGLEIDGPITLPCDA 85
             +E LK+SE EFG+  +GPITLP D+
Sbjct:    68 QELLKISEEEFGIPTEGPITLPFDS 92

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2199819 AT1G76190 "AT1G76190" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 37/99 (37%), Positives = 60/99 (60%)

Query:    35 KGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILF 94
             KGHF VYT +  RF++PL+YL+  + +  L+++E EFG  IDGP+ +PCD S M+++I+ 
Sbjct:    23 KGHFAVYTNEGKRFVLPLDYLNHPMLQVLLQMAEDEFGTTIDGPLKVPCDGSLMDHIIML 82

Query:    95 LQRGGDKNVETFLLMSVVTSCD--SSQSLFHEEQTEQQL 131
             ++R    + +     S  ++C   S  SLF  +   Q L
Sbjct:    83 VRRSMSHDYDDVEKSSTSSTCKGASISSLFRGQSQLQSL 121

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	7e-23
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	6e-08
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-06
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-04

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 85.4 bits (212), Expect = 7e-23
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 1  MASKWEIFAVIKRKGISLPNNEAGLVNGTAQLAY--KGHFVVYTTDQA-RFLIPLEYLSK 57
          MAS+ +  +  K+  +S  +  +   +  +  A   KGHF VY  ++  RF++P+ YL+ 
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGEETRRFVVPISYLNH 60

Query: 58 RIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQ 96
           +F+E L  +E EFG + DG +T+PCD    E+++  L+
Sbjct: 61 PLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 19/51 (37%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 35 KGHFVVYT-TDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCD 84
          KGHF VY   +++R+++P+ +L+   F+  L+ +E EFG + D  +T+PC+
Sbjct: 42 KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCE 92

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 29  TAQLAYKGHFVVYTTDQ---ARFLIPLEYLSKRIFREPLKLSEVEFGLEID-GPITLPCD 84
           T+ L  KGH  VY  +Q    RF++P+ YL+  +FRE L  +E E G     G +T+PC 
Sbjct: 35  TSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCR 94

Query: 85  ASFMEYVI 92
                ++I
Sbjct: 95  EESFLHLI 102

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 35  KGHFVVYTTDQ-----ARFLIPLEYLSKRIFREPLKLSEVEFGLEID-GPITLPC-DASF 87
           KGH  VY  +Q      RF++P+ +L+   F+E L  +E EFG     G +T+PC +  F
Sbjct: 37  KGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVF 96

Query: 88  MEYVILFLQ 96
           ++ +   L 
Sbjct: 97  LDLIASRLH 105

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PLN03220	105	uncharacterized protein; Provisional	99.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	87.08
PRK02899	197	adaptor protein; Provisional	86.52
PRK02315	233	adaptor protein; Provisional	82.42

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=2.6e-36  Score=218.72  Aligned_cols=96  Identities=33%  Similarity=0.647  Sum_probs=79.3

Q ss_pred             ChhhhHHhhhcccCccccCCccC---CCCCCccccccCCcEEEEecc-CeeeeecccccCchhhHHHHhhhhhhhccCCC
Q 045129            1 MASKWEIFAVIKRKGISLPNNEA---GLVNGTAQLAYKGHFVVYTTD-QARFLIPLEYLSKRIFREPLKLSEVEFGLEID   76 (136)
Q Consensus         1 makkWqk~aa~~rkr~s~~~~~~---~~~~~~~~~vpkG~~~VyVGe-~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~~   76 (136)
                      |++||++.+..++..........   ..+.++..++|+||||||||+ ++||+||++|||||+|++||++|||||||+++
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~   80 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD   80 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCC
Confidence            88999988777655333222111   111222478999999999997 99999999999999999999999999999999


Q ss_pred             CCeeecCCHHHHHHHHHHHh
Q 045129           77 GPITLPCDASFMEYVILFLQ   96 (136)
Q Consensus        77 G~L~iPCd~~~Fe~vl~~i~   96 (136)
                      |+|+||||+++|++++|+|+
T Consensus        81 G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   81 GPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CcEEeeCCHHHHHHHHHHhC
Confidence            99999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=211.64  Aligned_cols=67  Identities=28%  Similarity=0.626  Sum_probs=64.6

Q ss_pred             ccccccCCcEEEEecc-CeeeeecccccCchhhHHHHhhhhhhhccCCCCCeeecCCHHHHHHHHHHH
Q 045129           29 TAQLAYKGHFVVYTTD-QARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFL   95 (136)
Q Consensus        29 ~~~~vpkG~~~VyVGe-~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~i   95 (136)
                      .+.+|||||||||||+ ++||+||++|||||+|++||++|||||||+++|+|+||||+++|++++|+|
T Consensus        36 ~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         36 LPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            4678999999999997 689999999999999999999999999999999999999999999999998

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=4.4e-32  Score=199.72  Aligned_cols=89  Identities=30%  Similarity=0.528  Sum_probs=74.0

Q ss_pred             hhhHHhhhcccCccccCCccCCCCCCccccccCCcEEEEecc---CeeeeecccccCchhhHHHHhhhhhhhccCC-CCC
Q 045129            3 SKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTD---QARFLIPLEYLSKRIFREPLKLSEVEFGLEI-DGP   78 (136)
Q Consensus         3 kkWqk~aa~~rkr~s~~~~~~~~~~~~~~~vpkG~~~VyVGe---~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~-~G~   78 (136)
                      +-||.+...+|+..+-+..    +++++.+|||||||||||+   ++||+||++|||||+|++||++|||||||++ +|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~----~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~   88 (108)
T PLN03219         13 QIFKSQSMRNKNGSSSPSS----STTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGG   88 (108)
T ss_pred             HHHHHHHHhcccCCCCCcc----CCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCC
Confidence            4577666666665442222    2345689999999999996   7999999999999999999999999999997 699


Q ss_pred             eeecCCHHHHHHHHHHH
Q 045129           79 ITLPCDASFMEYVILFL   95 (136)
Q Consensus        79 L~iPCd~~~Fe~vl~~i   95 (136)
                      |+||||++.|++++..-
T Consensus        89 L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         89 LTIPCREESFLHLITSH  105 (108)
T ss_pred             EEEeCCHHHHHHHHHhh
Confidence            99999999999998653

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=1.2e-31  Score=196.56  Aligned_cols=67  Identities=31%  Similarity=0.631  Sum_probs=62.7

Q ss_pred             CCccccccCCcEEEEecc-----CeeeeecccccCchhhHHHHhhhhhhhccCC-CCCeeecCCHHHHHHHHH
Q 045129           27 NGTAQLAYKGHFVVYTTD-----QARFLIPLEYLSKRIFREPLKLSEVEFGLEI-DGPITLPCDASFMEYVIL   93 (136)
Q Consensus        27 ~~~~~~vpkG~~~VyVGe-----~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~-~G~L~iPCd~~~Fe~vl~   93 (136)
                      ++++.+|||||||||||+     ++||+||++|||||+|++||++|||||||++ +|+|+||||++.|++++.
T Consensus        29 ~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         29 SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            445789999999999996     6999999999999999999999999999998 699999999999999984

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=87.08  E-value=0.69  Score=31.57  Aligned_cols=54  Identities=17%  Similarity=0.231  Sum_probs=41.5

Q ss_pred             CeeeeecccccC-c--hhhHHHHhhhhhhhccCCCCCeeecCCHHHHHHHHHHHhcC
Q 045129           45 QARFLIPLEYLS-K--RIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRG   98 (136)
Q Consensus        45 ~~RFvVp~~yLn-h--p~F~~LL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~i~~~   98 (136)
                      +++|.++.+.|. +  ..|..++........-+.+|.+-|-+|...|++|+..++.+
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            678888888877 4  47888888653333334579999999999999999999984

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=86.52  E-value=0.5  Score=37.84  Aligned_cols=25  Identities=36%  Similarity=0.813  Sum_probs=21.9

Q ss_pred             chhhHHHHhhhhhhhccCCCCCeee
Q 045129           57 KRIFREPLKLSEVEFGLEIDGPITL   81 (136)
Q Consensus        57 hp~F~~LL~~aeeEfG~~~~G~L~i   81 (136)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4578888999999999999999963

>PRK02315 adaptor protein; Provisional

Probab=82.42  E-value=0.9  Score=37.13  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             chhhHHHHhhhhhhhccCCCCCeee
Q 045129           57 KRIFREPLKLSEVEFGLEIDGPITL   81 (136)
Q Consensus        57 hp~F~~LL~~aeeEfG~~~~G~L~i   81 (136)
                      +-+|.++|+++..|+||..+|||+|
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            4689999999999999999999964

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00