Citrus Sinensis ID: 045137

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPDS
Secondary Structure (PSIPRED)
cEEEcccccccccHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccccccEEcccccccHHHHcccccccEEEEEEccHHHHHHHHHccccccccEEEEEEEccccccccccccccccccccEEEEcccccccEEEEccEEcccccccccccccccEEEEEccccccccccccccccccEEEEEcccccEEEcccccccccccccccccccccccEEccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHHcccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHccHHHHHHHHHEEEEccccccHccccHHHHHccHccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcEEEEccHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHccHHHccEEEEcccccccEEEEccccccccccccccccccEEEEEEcccccccccHHHEcccccEEEEcccHHHHHHHccccccccccccccccccHHHEEEEEcccHHHHHHccccccccccEEEEEcccccccccccccccccccEEEEEccHHHHHHcccccHHHHHHccccccccc
Coil and Loop (DISEMBL)
LLDISHTTIRELPEELKLLVNLkclnlrwtgaliriprgliskFSRLRVLRMLGTggfifyeapedsvlfgGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLtgdkksiidataftdlnhlnelwidngieleeLKIDYTEIVRkrrepfvfhslHLVTIyschklkdstflafapnlkslsLFKCRAMEEIISvgkiaenpemmghispfenlksldlsylpelksifwkplpfthlkeMGVRACdqlrklpldsnsakeRKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPDS
Flexible Loop (DISEMBL)
LLDISHTTIRELPEELKLLVNLKCLNLRWtgaliriprgliskfsRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQlrklpldsnsakerkfVIRGEEDWWNRLQWEDEATQIAFRSCFQPDS
Low Complexity Region (SEG)
LLDISHTTIRELPEElkllvnlkclnlRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQellglkylevleltlGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPDS
Disordered region (IsUnstruct)
********IRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPL******ERKFVIRGEEDWWNRLQWEDEATQIAFRSCF****
Disordered Region (DISOPRED)
LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKI**********SPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLD*********VIRGEEDWWNRLQWEDEATQIAFRSCFQP**
Disordered Region (DISEMBL)
LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPDS
Disordered Region (DISPRO)
LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKI******MGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q9SH22	884	Probable disease resistan	yes	no	0.881	0.311	0.343	5e-29
O64973	889	Disease resistance protei	no	no	0.945	0.331	0.348	2e-28
Q9FLB4	874	Putative disease resistan	no	no	0.903	0.322	0.338	2e-27
P60838	894	Probable disease resistan	no	no	0.958	0.334	0.328	4e-27
Q9C8T9	898	Putative disease resistan	no	no	0.887	0.308	0.339	7e-27
Q9LVT3	948	Probable disease resistan	no	no	0.900	0.296	0.336	1e-25
Q9SI85	893	Probable disease resistan	no	no	0.884	0.309	0.341	1e-25
Q8RXS5	888	Probable disease resistan	no	no	0.897	0.315	0.336	3e-25
P60839	884	Probable disease resistan	no	no	0.631	0.222	0.376	1e-24
Q8L3R3	885	Disease resistance protei	no	no	0.955	0.336	0.333	1e-23

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 170/332 (51%), Gaps = 57/332 (17%)

Query: 1   LLDISHT-TIRELPEELKLLVNLKCLNLRWTGALIRIPRGL------------------- 40
           +LD+SH  ++ ELPEE+  LV+LK LNL +T  +  +P+G+                   
Sbjct: 572 VLDLSHNKSLFELPEEISNLVSLKYLNLLYT-EISHLPKGIQELKKIIHLNLEYTRKLES 630

Query: 41  ---ISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 97
              IS    L+VL++  +        P D          ++EL  L++LE+L  T+    
Sbjct: 631 ITGISSLHNLKVLKLFRS------RLPWDLNT-------VKELETLEHLEILTTTIDP-R 676

Query: 98  ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLN-HLNELWIDNGIELEELKIDY 156
           A Q  LSS++L S  R L +Y           ++ + LN HL  L +    +L E +I  
Sbjct: 677 AKQ-FLSSHRLLSHSRLLEIY----------GSSVSSLNRHLESLSVSTD-KLREFQIKS 724

Query: 157 TEIVRKRREPFV-FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKI 215
             I   +      F SL  V I++C  L++ TFL FAP ++SLS++  + +E+II+  K 
Sbjct: 725 CSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKA 784

Query: 216 AENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNS 275
            E  E    I PF  L  L L  LP+LK I+W+PLPF  L+E+ +R C  LRKLPLDS S
Sbjct: 785 CEGEE--SGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTS 842

Query: 276 AK--ERKFVIRGEED-WWNRLQWEDEATQIAF 304
            K  E   +IR ++  W+  ++W DEAT+  F
Sbjct: 843 GKQGENGCIIRNKDSRWFEGVKWADEATKKRF 874

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/321 (34%), Positives = 166/321 (51%), Gaps = 26/321 (8%)

Query: 1   LLDIS-HTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGL--ISKFSRLRVLRMLGTGG 57
           +LD+S + ++ ELPEE+  L +L+  NL +T  + ++P GL  + K   L +  M   G 
Sbjct: 567 VLDLSENQSLNELPEEISELASLRYFNLSYT-CIHQLPVGLWTLKKLIHLNLEHMSSLGS 625

Query: 58  FIFYE--------APEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLK 109
            +              DS L      L++EL  L++LEV+ L + S    + LL S +L 
Sbjct: 626 ILGISNLWNLRTLGLRDSRLLLDMS-LVKELQLLEHLEVITLDISSSLVAEPLLCSQRLV 684

Query: 110 SCIRSL-YLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKR-REPF 167
            CI+ + + YL   K+  +       + +L +L I     + E+KI+ T     R + P 
Sbjct: 685 ECIKEVDFKYL---KEESVRVLTLPTMGNLRKLGIKR-CGMREIKIERTTSSSSRNKSPT 740

Query: 168 V--FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHI 225
              F +L  V I  CH LKD T+L FAPNL  L +   + +E+IIS  K  E+      I
Sbjct: 741 TPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHS---ATI 797

Query: 226 SPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNS--AKERKFVI 283
            PF  L++L L  L  LK I+ K L F  LK + V  C++LRKLPLDS S  A E   + 
Sbjct: 798 VPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIY 857

Query: 284 RGEEDWWNRLQWEDEATQIAF 304
            GE +W  R++WED+ATQ+ F
Sbjct: 858 YGEREWIERVEWEDQATQLRF 878

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 161/316 (50%), Gaps = 34/316 (10%)

Query: 1   LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60
            L++S T I  LP+ L  L NL  LNL  T  L RI    I     L VL++  +G  I 
Sbjct: 578 FLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYE--IHDLPNLEVLKLYASGIDI- 634

Query: 61  YEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLT 120
                        + L++++  +K+L +L +TL +   L+I L   +  S    L L   
Sbjct: 635 ------------TDKLVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQ 682

Query: 121 GDKKSI------IDATAFTDL--NHLNELWIDNGIELEELKIDYTEIVRKR-REPFVFHS 171
              +S+      I ++ F ++  +H+ +      IE+E    + +EIV  R R    F +
Sbjct: 683 SYYQSLKVPLATISSSRFLEIQDSHIPK------IEIEGSSSNESEIVGPRVRRDISFIN 736

Query: 172 LHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVG---KIAENPEMMGHISPF 228
           L  V + +C  LKD T+L FAP+L +L +     +E IIS     ++ +  E+ G I PF
Sbjct: 737 LRKVRLDNCTGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVI-PF 795

Query: 229 ENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEED 288
             L+ L L  L +LKSI+  PL F  LKE+ +++C +L KLPLDS SA ++  VI  EE+
Sbjct: 796 RELEFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEE 855

Query: 289 WWNRLQWEDEATQIAF 304
           W   LQWED AT+  F
Sbjct: 856 WLQGLQWEDVATKERF 871

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  122 bits (305), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 175/326 (53%), Gaps = 27/326 (8%)

Query: 1   LLDIS-HTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFI 59
           +LD+S ++++R+LP ++  LV+L+ L+L WT  + R+P GL  +  +LR LR+       
Sbjct: 567 VLDLSGNSSLRKLPNQISKLVSLRYLDLSWT-YIKRLPVGL-QELKKLRYLRLDYMKRLK 624

Query: 60  FYEAPEDSVLFGGGEVLIQELLGLKY-----------LEVLELTLGSYHALQILLSSNKL 108
                 +       + L+Q  + L             LEVL +++ S   ++ LL++ +L
Sbjct: 625 SISGISNISSLRKLQ-LLQSKMSLDMSLVEELQLLEHLEVLNISIKSSLVVEKLLNAPRL 683

Query: 109 KSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI-VRKRREPF 167
             C++   L L G ++         D+++LN++ I     + E+KI+   + +   R P 
Sbjct: 684 VKCLQ--ILVLRGVQEESSGVLTLPDMDNLNKVII-RKCGMCEIKIERKTLSLSSNRSPK 740

Query: 168 V--FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHI 225
               H+L  V I SC  LKD T+L FAPNL SL +     +E II+     E    M  I
Sbjct: 741 TQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIIN----QEKAMTMSGI 796

Query: 226 SPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSA-KERKFVIR 284
            PF+ L+SL L  L  L+SI+W+PL F  LK + +  C +LRKLPLDS  A ++ + VI+
Sbjct: 797 IPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAIRDEELVIK 856

Query: 285 -GEEDWWNRLQWEDEATQIAFRSCFQ 309
             EE+W  R++W++EAT++ F   F+
Sbjct: 857 YQEEEWLERVEWDNEATRLRFLPFFK 882

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 159/318 (50%), Gaps = 41/318 (12%)

Query: 2   LDISHTTIRELP---EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF 58
           L++S T IR LP   +ELK L++L        G+++ I     S    L+VL++ G+   
Sbjct: 590 LNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVGI-----SCLHNLKVLKLSGSS-- 642

Query: 59  IFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH-ALQILLSSNKLKSCIRSLYL 117
             Y    D+V         +EL  L++LEVL  T+          LSS++L SCIR L +
Sbjct: 643 --YAWDLDTV---------KELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKI 691

Query: 118 YLTGDKKSIIDATAF-TDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVT 176
               ++       +    ++ L E  I++          +T  ++  R    F SL  V 
Sbjct: 692 SNNSNRNRNSSRISLPVTMDRLQEFTIEHC---------HTSEIKMGR-ICSFSSLIEVN 741

Query: 177 IYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDL 236
           + +C +L++ TFL FAPNLK L +     +E+II+  K A + E  G I PF  L  L L
Sbjct: 742 LSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEK-AHDGEKSG-IVPFPKLNELHL 799

Query: 237 SYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERK---FVIRGEEDWWNRL 293
             L ELK+I+W PLPF  L+++ V  C  L+KLPLDS S K       +   E +W  R+
Sbjct: 800 YNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWITRV 859

Query: 294 QWEDEATQIAF---RSCF 308
           +WEDEAT+  F   RS F
Sbjct: 860 EWEDEATKTRFLANRSSF 877

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 164/330 (49%), Gaps = 49/330 (14%)

Query: 1   LLDIS-HTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGL------------------- 40
           +LD+S +  + ELPEE+  LV L+ LNL WT  +  +P GL                   
Sbjct: 548 VLDLSFNRELAELPEEVSSLVLLRFLNLSWT-CIKGLPLGLKELKSLIHLDLDYTSNLQE 606

Query: 41  ---ISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 97
              I+    L+VLR+       F+    D         L++++  LK L+ L LT+    
Sbjct: 607 VDVIASLLNLQVLRL-------FHSVSMDL-------KLMEDIQLLKSLKELSLTVRGSS 652

Query: 98  ALQILLSSNKLKSCIRSLYLYLTG-DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDY 156
            LQ LLS  +L S IR L+L  T      I+   A   L  L+ L    G  + E+ ID+
Sbjct: 653 VLQRLLSIQRLASSIRRLHLTETTIVDGGILSLNAIFSLCELDIL----GCNILEITIDW 708

Query: 157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIA 216
              +++   P  F ++  +TI+ C  L+D T+L  AP L  LS+ +C  MEE+IS  K  
Sbjct: 709 RCTIQREIIP-QFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDKAM 767

Query: 217 ENPEMMGHIS--PFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSN 274
                +G+ S  PF+NL  L L  LP+L+SI+W PLPF  L+ + +R C +LR+LP +S 
Sbjct: 768 AK---LGNTSEQPFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSE 824

Query: 275 SAKERKFVIRGEEDWWNRLQWEDEATQIAF 304
           S    +     EE     ++WEDEAT+  F
Sbjct: 825 STIGNQVETIIEEQVIKIVEWEDEATKQRF 854

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 167/331 (50%), Gaps = 55/331 (16%)

Query: 1   LLDISHT-TIRELPEELKLLVNLKCLNLRWTGALIRIPRGL------------------- 40
           +LD+SH  ++ ELPEE+  LV+LK LNL  TG +  + +G+                   
Sbjct: 574 VLDLSHNQSLFELPEEISNLVSLKYLNLSHTG-IRHLSKGIQELKKIIHLNLEHTSKLES 632

Query: 41  ---ISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 97
              IS    L+VL++ G+        P D          ++EL  L++LE+L  T+    
Sbjct: 633 IDGISSLHNLKVLKLYGS------RLPWDLNT-------VKELETLEHLEILTTTIDP-R 678

Query: 98  ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT 157
           A Q  LSS++L S  RS  L + G       +  F+    L  L +    +L E +I   
Sbjct: 679 AKQ-FLSSHRLMS--RSRLLQIFG-------SNIFSPDRQLESLSVSTD-KLREFEIMCC 727

Query: 158 EIVRKRREPFV-FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIA 216
            I   +      F SL  VTIY+C  L++ TFL FAP L+SLS+   + +E+II+  K  
Sbjct: 728 SISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKAC 787

Query: 217 ENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSA 276
           E  +    I PF  LK L+L  LP+LK+I+ +PLPF  L+++ +  C  LRKLPLDS S 
Sbjct: 788 EGED--SGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSG 845

Query: 277 K--ERKFVIRGEED-WWNRLQWEDEATQIAF 304
           K  E   +I  ++  W   ++W DEAT+  F
Sbjct: 846 KQGENGCIIHYKDSRWLKGVKWADEATKKRF 876

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 150/306 (49%), Gaps = 26/306 (8%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           L +S T IR  P  L  L  L  LNL +T  +  I    IS  + L+VLR+  +G     
Sbjct: 586 LSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICG--ISGLTSLKVLRLFVSG----- 638

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
             PED  +         EL  L+ L+ L +TLG    L+  LS+ +L SC R+L +    
Sbjct: 639 -FPEDPCVL-------NELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLN 690

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFV---FHSLHLVTIY 178
            + S+I   A  D   L EL   +  ++ E+K+   E V     P     F +L  V++ 
Sbjct: 691 PQSSVISFVATMD--SLQELHFADS-DIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLE 747

Query: 179 SCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY 238
            C +L+D T+L FAPNL  L +     ++E+I+  K  +      ++ PF+ LK L L  
Sbjct: 748 FCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQQ-----NLIPFQELKELRLEN 802

Query: 239 LPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDE 298
           +  LK I   PLPF  L+++ V  C +LRKLPL+  S      VI   + W   L+WEDE
Sbjct: 803 VQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDE 862

Query: 299 ATQIAF 304
           AT+  F
Sbjct: 863 ATKARF 868

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 18/215 (8%)

Query: 95  SYHALQILLSSNKLKSCIRSLYL-YLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK 153
           S  AL+ LL S++L  C++ + + YL  +   I+   +  DL    E++I  G  + ++ 
Sbjct: 672 SSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIGDLR---EVFI-GGCGMRDII 727

Query: 154 IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVG 213
           I+    +        F +L  V I  C+ LKD T+L FAPNL  L+++  R +EEIIS  
Sbjct: 728 IERNTSLTSP----CFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEIISQE 783

Query: 214 KIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVR-ACDQLRKLPLD 272
           K +        I PF  L+ L L  LPELKSI+W PLPF  L ++ V+  C +L KLPLD
Sbjct: 784 KAS-----TADIVPFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLD 838

Query: 273 SNS---AKERKFVIRGEEDWWNRLQWEDEATQIAF 304
           S S   A E   +  G+E+W  R++WED+AT++ F
Sbjct: 839 SQSCIVAGEELVIQYGDEEWKERVEWEDKATRLRF 873

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 161/318 (50%), Gaps = 20/318 (6%)

Query: 1   LLDISHT-TIRELPEELKLLVNLKCLNLRWTGALI-RIPRGL--ISKFSRL---RVLRML 53
           +LD+S   ++ ELPEE+  LV+L+ L+L  +G  I R+P GL  + K   L   R  R+ 
Sbjct: 567 VLDLSENHSLSELPEEISELVSLQYLDL--SGTYIERLPHGLHELRKLVHLKLERTRRLE 624

Query: 54  GTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG---SYHALQILLSSNKLKS 110
              G  +  +     L      L   L+    L      +    S   +  L    ++  
Sbjct: 625 SISGISYLSSLRTLRLRDSKTTLDTGLMKELQLLEHLELITTDISSGLVGELFCYPRVGR 684

Query: 111 CIRSLYLYLTGDK-KSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVF 169
           CI+ +Y+    ++ +  +       +++L  + I N   + E+ I+ T   +    P  F
Sbjct: 685 CIQHIYIRDHWERPEESVGVLVLPAIHNLCYISIWN-CWMWEIMIEKTPWKKNLTNPN-F 742

Query: 170 HSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFE 229
            +L  V I  C  LKD T+L FAPNL +L ++ C+ +E+IIS  K A   E    I PF+
Sbjct: 743 SNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLEK--EILPFQ 800

Query: 230 NLKSLDLSYLPELKSIFWKPLPFTHLKEMGV-RACDQLRKLPLDSNS-AKERKFVIR-GE 286
            L+ L+L  L ELKSI+W  LPF  L+ + +   C +LRKLPLDS S  K  +FVI+  E
Sbjct: 801 KLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKE 860

Query: 287 EDWWNRLQWEDEATQIAF 304
           + W  R++WEDEATQ  F
Sbjct: 861 KKWIERVEWEDEATQYRF 878

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
24461863	889	NBS-LRR type disease resistance protein	0.980	0.344	0.770	1e-125
24461866	890	NBS-LRR type disease resistance protein	0.967	0.339	0.560	1e-87
24461865	892	NBS-LRR type disease resistance protein	0.971	0.339	0.558	4e-86
24461864	899	NBS-LRR type disease resistance protein	0.958	0.332	0.545	1e-80
24461861	890	NBS-LRR type disease resistance protein	0.951	0.333	0.551	4e-74
359482674	991	PREDICTED: probable disease resistance p	0.919	0.289	0.435	1e-55
147866649	350	hypothetical protein VITISV_018478 [Viti	0.983	0.877	0.432	9e-55
147852651	882	hypothetical protein VITISV_017542 [Viti	0.881	0.311	0.413	2e-53
359482672	905	PREDICTED: probable disease resistance p	0.983	0.339	0.429	2e-52
225442867	893	PREDICTED: probable disease resistance p	0.945	0.330	0.420	6e-52

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/310 (77%), Positives = 252/310 (81%), Gaps = 4/310 (1%)

Query: 1   LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60
           LLDIS T+I ELPEELKLLVNLKCLNLRW   L +IPR LIS  SRL VLRM  TG    
Sbjct: 582 LLDISQTSIGELPEELKLLVNLKCLNLRWATWLSKIPRQLISNSSRLHVLRMFATG-CSH 640

Query: 61  YEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLT 120
            EA EDSVLFGGGEVLIQELLGLKYLEVLELTL S HALQ+  SSNKLKSCIRSL L   
Sbjct: 641 SEASEDSVLFGGGEVLIQELLGLKYLEVLELTLRSSHALQLFFSSNKLKSCIRSLLLDEV 700

Query: 121 GDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSC 180
              KSIIDATAF DLNHLNEL ID+  E+EELKIDYTEIVRKRREPFVF SLH VT+  C
Sbjct: 701 RGTKSIIDATAFADLNHLNELRIDSVAEVEELKIDYTEIVRKRREPFVFGSLHRVTLGQC 760

Query: 181 HKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLP 240
            KLKD TFL FAPNLKSL L  CRAMEEIISVGK AE PE+MGHISPFENL+ L L  LP
Sbjct: 761 LKLKDLTFLVFAPNLKSLQLLNCRAMEEIISVGKFAEVPEVMGHISPFENLQRLHLFDLP 820

Query: 241 ELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEAT 300
            LKSI+WKPLPFTHLKEM V  C+QL+KLPLDSNSA   KFVIRGE + WNRLQWED+AT
Sbjct: 821 RLKSIYWKPLPFTHLKEMRVHGCNQLKKLPLDSNSA---KFVIRGEAEGWNRLQWEDDAT 877

Query: 301 QIAFRSCFQP 310
           QIAFRSCFQP
Sbjct: 878 QIAFRSCFQP 887

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 213/307 (69%), Gaps = 5/307 (1%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           LD+S ++I ELP ELK LVNLKCLNL +T +L  IPR LIS  SRL VLRM       F 
Sbjct: 587 LDLSKSSIEELPLELKALVNLKCLNLEYTWSLTTIPRQLISNLSRLHVLRMFAASHSAFD 646

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
            A EDS+LFGGGE++++ELLGLKYLEV+  TL S H LQ  LSS+KL+SC R+L L    
Sbjct: 647 RASEDSILFGGGELIVEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSCTRALLLQCFN 706

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCH 181
           D  S+ + +A  DL  LN LWI    +LEELK+DYT  V++    FVFHSL  V I +C 
Sbjct: 707 DSTSL-EVSALADLKQLNRLWITECKKLEELKMDYTREVQQ----FVFHSLKKVEILACS 761

Query: 182 KLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE 241
           KLKD TFL FAPNL+S+ L  C AMEE++S+GK AE PE++ +++PF  L++L L     
Sbjct: 762 KLKDLTFLVFAPNLESIELMGCPAMEEMVSMGKFAEVPEVVANLNPFAKLQNLKLFGATN 821

Query: 242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQ 301
           LKSI+WKPLPF HLK M    C +L+KLPLDSNSA+ER  VI G   WW +L+W DEAT+
Sbjct: 822 LKSIYWKPLPFPHLKSMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWEQLEWVDEATR 881

Query: 302 IAFRSCF 308
            AF  CF
Sbjct: 882 NAFLPCF 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 172/308 (55%), Positives = 219/308 (71%), Gaps = 5/308 (1%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           LD+S + I E P ELK LVNLKCL+L +T  LI IPR LIS  SRLRVLRM G     F 
Sbjct: 588 LDLSESDIEEFPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLRVLRMFGASHNAFD 647

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
           EA E+S+LFGGGE++++ELLGLK+LEV+ LTL S + LQ  L+S+KL+SC ++L L    
Sbjct: 648 EASENSILFGGGELIVEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSCTQALLLQHFK 707

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCH 181
           D  S+ + +A  DL  LN L I N + LEELK+DY E V++    F F SL++V I +C 
Sbjct: 708 DSTSL-EVSALADLKQLNRLQIANSVILEELKMDYAEEVQQ----FAFRSLNMVEICNCI 762

Query: 182 KLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE 241
           +LKD TFL FAPNLKS+ +  C AMEEI S GK AE PE+M +++PFE L++L+++    
Sbjct: 763 QLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARN 822

Query: 242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQ 301
           LKSI+WK LPF HLK M    C +L+KLPLDSNSAKERK VI GE +W  +LQWEDEAT+
Sbjct: 823 LKSIYWKSLPFPHLKAMSFLHCKKLKKLPLDSNSAKERKIVISGERNWREQLQWEDEATR 882

Query: 302 IAFRSCFQ 309
            AF  CF+
Sbjct: 883 NAFLRCFR 890

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/308 (54%), Positives = 208/308 (67%), Gaps = 9/308 (2%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           LD+S T I+ELP+EL  L NLK LNL  T  LI IPR LIS+FS L VLRM G G +   
Sbjct: 598 LDLSGTAIQELPKELNALENLKSLNLDQTHYLITIPRQLISRFSCLVVLRMFGVGDWSPN 657

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
               DS LF GG++L++ L GLK+LEVL LTL +   LQ +L+S KL+SC ++LYL+ + 
Sbjct: 658 GKRNDSDLFSGGDLLVEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRSCTQALYLH-SF 716

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCH 181
            +   +D +A   L HLN LWI    ELEELK+         R+PFVF SL  + IY CH
Sbjct: 717 KRSEPLDVSALAGLEHLNRLWIHECEELEELKM--------ARQPFVFQSLEKIQIYGCH 768

Query: 182 KLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE 241
           +LK+ TFL FAPNLKS+ +  C AMEEIIS  K A+ PE+M  I PF  L SL L  L  
Sbjct: 769 RLKNLTFLLFAPNLKSIEVSSCFAMEEIISEVKFADFPEVMPIIKPFAQLYSLRLGGLTV 828

Query: 242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQ 301
           LKSI+ +PLPF  L+++ V +CD+LRKLPLDSNSAKERK VIRG   WW +LQWED+ TQ
Sbjct: 829 LKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYTKWWEQLQWEDQDTQ 888

Query: 302 IAFRSCFQ 309
            AFR CF+
Sbjct: 889 NAFRPCFR 896

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 170/308 (55%), Positives = 206/308 (66%), Gaps = 11/308 (3%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           LD+S + I E+PEELK LVNLKCLNL +TG L++IP  LIS FSRL VLRM G   F + 
Sbjct: 591 LDLSTSLISEIPEELKALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMFGNAYFSYG 650

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
             P +SVLFGGGE+L++ELLGLK+LEVL LTLGS  ALQ  L+S+ L+SC R++ L    
Sbjct: 651 NYPIESVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLTSHMLRSCTRAMLLQDFQ 710

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCH 181
              S +D +   DL  L  L I +  EL ELKIDY   V++    + FHSL    +  C 
Sbjct: 711 GSTS-VDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQR----YGFHSLQSFEVNYCS 765

Query: 182 KLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE 241
           KLKD T L   PNLKS+ +  C AMEEIISVG+ A NP      + F  L+ L +  LP 
Sbjct: 766 KLKDLTLLVLIPNLKSIEVTDCEAMEEIISVGEFAGNP------NAFAKLQYLGIGNLPN 819

Query: 242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQ 301
           LKSI+WKPLPF  L+E+ V  C +L+KLPLDSNSAKE K VIRG  +WW  LQWEDEATQ
Sbjct: 820 LKSIYWKPLPFPCLEELTVSDCYELKKLPLDSNSAKEHKIVIRGAANWWRNLQWEDEATQ 879

Query: 302 IAFRSCFQ 309
            AF SCFQ
Sbjct: 880 NAFLSCFQ 887

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482674|ref|XP_002281708.2| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/310 (43%), Positives = 185/310 (59%), Gaps = 23/310 (7%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           LD+S T I+ELP ELK L NLKCL L     L  IP  LIS    L+V+ M   G     
Sbjct: 586 LDLSLTEIKELPIELKNLGNLKCLLLSDMPQLSSIPEQLISSLLMLQVIDMSNCG----- 640

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
                  +  G E L++EL  LKYL  L +T+ S  A + LLSS+KL+SCI S+ L    
Sbjct: 641 -------ICDGDEALVEELESLKYLHDLGVTITSTSAFKRLLSSDKLRSCISSVCLR-NF 692

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFV----------FHS 171
           +  S ++ T+  ++ +L EL I N   LE L ID+    +K  E             FHS
Sbjct: 693 NGSSSLNLTSLCNVKNLCELSISNCGSLENLVIDWAWEGKKTTESNYLNSKVSSHNSFHS 752

Query: 172 LHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL 231
           L +V I SC +LKD T++AFAPNLK+L++  C  M+E+I  GK  E+ E   ++SPF  L
Sbjct: 753 LEVVVIESCSRLKDLTWVAFAPNLKALTIIDCDQMQEVIGTGKCGESAENGENLSPFVKL 812

Query: 232 KSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291
           + L+L  LP+LKSIFWK LPF +L  + V +C  L+KLPL++NSAK  + VI G+ +WWN
Sbjct: 813 QVLELDDLPQLKSIFWKALPFIYLNTIYVDSCPLLKKLPLNANSAKGHRIVISGQTEWWN 872

Query: 292 RLQWEDEATQ 301
           +++WEDE +Q
Sbjct: 873 KVEWEDELSQ 882

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866649|emb|CAN81572.1| hypothetical protein VITISV_018478 [Vitis vinifera]

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 138/319 (43%), Positives = 186/319 (58%), Gaps = 12/319 (3%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           L +S T I+ELP ELK L  LKCL L     L  IP  LIS  S L+V+ M  +G     
Sbjct: 31  LSLSKTNIKELPIELKNLGKLKCLVLVDMPQLSSIPEQLISSLSMLQVIDMFNSG-ISER 89

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
              +D +L    E L+QEL  LKYL  L +++ S  A + LLSS+K++SCI  L L    
Sbjct: 90  TVLKDGILSDDNEALVQELESLKYLHGLGVSVTSASAFKRLLSSDKIRSCISRLCLK-NF 148

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT----------EIVRKRREPFVFHS 171
           +  S ++ T+ +++  L  L+I N   LE+L+ID+            +  K      FHS
Sbjct: 149 NGSSSLNLTSLSNVKCLLSLYIPNCGSLEDLEIDWAWEGKETTESNSLNSKVSSHNSFHS 208

Query: 172 LHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL 231
           L  + +  C +LKD T+L FAPNLK L +  C  M+EII  GK  E+ E   ++SPF  L
Sbjct: 209 LSWLGVERCSRLKDLTWLVFAPNLKVLLITSCDQMQEIIGTGKCGESAENGENLSPFAKL 268

Query: 232 KSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291
           + L L  LP+LKSIFWK LPF +L  + V +C  L+KLPLD+NSAK  + VI G+ +WWN
Sbjct: 269 QVLHLDDLPQLKSIFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKGHRIVISGQTEWWN 328

Query: 292 RLQWEDEATQIAFRSCFQP 310
            ++WEDEATQ AF  CF P
Sbjct: 329 EVEWEDEATQNAFLPCFVP 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/319 (41%), Positives = 175/319 (54%), Gaps = 44/319 (13%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           LD+S T I+ELP ELK L NLKCL L +   L  +P  LIS    L+V+ M   G     
Sbjct: 586 LDLSFTEIKELPIELKNLGNLKCLLLSFMPQLSSVPEQLISSLLMLQVIDMFDCG----- 640

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
                  +  G E L++EL  LKYL  L +T+ S  A + LLSS+KL+SCI         
Sbjct: 641 -------ICDGDEALVEELESLKYLHDLSVTITSTSAFKRLLSSDKLRSCIS-------- 685

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFV----------FHS 171
                           L  L+I N   LE+L+ID+    +K  E             FHS
Sbjct: 686 --------------RRLRNLFISNCGSLEDLEIDWVGEGKKTVESNYLNSKVSSHNSFHS 731

Query: 172 LHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL 231
           L  +T+ SC +LKD T++AFAPNLK L++  C  M+E+I   K  E+ E   ++ PF  L
Sbjct: 732 LEALTVVSCSRLKDLTWVAFAPNLKVLTIIDCDQMQEVIGTRKSDESAENGENLGPFAKL 791

Query: 232 KSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291
           + L L  LP+LKSIFWK LP  +L  + VR C  L+KLPL++NSAK  + VI G+ +WWN
Sbjct: 792 QVLHLVGLPQLKSIFWKALPLIYLNRIHVRNCPLLKKLPLNANSAKGHRIVISGQTEWWN 851

Query: 292 RLQWEDEATQIAFRSCFQP 310
            ++WEDEAT  AF  CF P
Sbjct: 852 EVEWEDEATHNAFLPCFVP 870

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/319 (42%), Positives = 182/319 (57%), Gaps = 12/319 (3%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           L++S T I+ELP ELK L  LKCL L     L  IP  LIS  S L+V+ M  +G     
Sbjct: 586 LNLSQTNIKELPIELKNLDKLKCLVLVDMPQLSSIPEQLISSLSMLQVIDMFNSG-ISER 644

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
              +D +L    E L+QEL  LKYL  L +++ S  A + LLSS KL+ CI  L L    
Sbjct: 645 TVLKDGILSDDNEALVQELESLKYLHGLGVSVKSASAFKRLLSSYKLRICISGLCLK-NF 703

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT----EIVR------KRREPFVFHS 171
           +  S ++ T+ ++   L+ L+I     LE+L+ID+     E V       K      FHS
Sbjct: 704 NGSSSLNLTSLSNAKCLSSLYISKCGSLEDLEIDWAGEGKETVESNYLNSKVSSHNSFHS 763

Query: 172 LHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL 231
           L  + I  C +LKD T+L F PNLK L++  C  M+E+I  GK  E+ E   ++SPF  L
Sbjct: 764 LVWLGIERCSRLKDLTWLVFVPNLKVLTIIDCDQMQEVIGTGKCGESAENGENLSPFVKL 823

Query: 232 KSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291
           + L+L  LP+LKSIFWK LPF +L  + VR C  L+KLPL +NSAK  + VI G   WWN
Sbjct: 824 QVLELDDLPQLKSIFWKALPFIYLNTIHVRNCPLLKKLPLSANSAKGNRIVIAGHNKWWN 883

Query: 292 RLQWEDEATQIAFRSCFQP 310
            ++WEDEATQ  F  CF P
Sbjct: 884 EVEWEDEATQNVFLPCFVP 902

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 134/319 (42%), Positives = 181/319 (56%), Gaps = 24/319 (7%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           L++S T I+ELP ELK L  LK L L     L  IP  LIS  S L+V+ M   G     
Sbjct: 586 LNLSQTNIKELPIELKNLGKLKFLLLH-RMRLSSIPEQLISSLSMLQVIDMFNCG----- 639

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG 121
                  +  G E L++EL  LKYL  L +T+ S  A + LLSS+KLKSCI  + L    
Sbjct: 640 -------ICDGDEALVEELESLKYLHDLGVTITSASAFKRLLSSDKLKSCISGVCLE-NF 691

Query: 122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREP----------FVFHS 171
           +  S ++ T+  ++  L  L+I N    E+L+ID+    ++  E             FH+
Sbjct: 692 NGSSSLNLTSLCNVKRLRNLFISNCGSSEDLEIDWAWEGKETTESNYLNSKVSSHSSFHN 751

Query: 172 LHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL 231
           L  + +  C +LKD T+L FAPNLK L +  C  M+EII  GK  E+ E   ++SPF  L
Sbjct: 752 LSWLRVKRCSRLKDLTWLVFAPNLKVLLITSCDQMQEIIGTGKCGESTENGENLSPFVKL 811

Query: 232 KSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291
           + L L  LP+LKSIFWK LPF +L  + V +C  L+KLPLD+NSAKE + VI G+ +W+N
Sbjct: 812 QVLTLEDLPQLKSIFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKEHRIVISGQTEWFN 871

Query: 292 RLQWEDEATQIAFRSCFQP 310
            L WE+EAT  AF  CF P
Sbjct: 872 ELDWENEATHNAFLPCFVP 890

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.641	0.226	0.388	8.2e-26
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.644	0.224	0.366	1.7e-25
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.618	0.218	0.390	2.8e-25
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.628	0.220	0.392	2.6e-24
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.650	0.227	0.342	5.7e-24
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.483	0.170	0.445	6.9e-24
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.621	0.216	0.375	7.1e-24
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.439	0.153	0.454	7.4e-24
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.631	0.207	0.376	1.3e-23
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.628	0.257	0.346	1.5e-22

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 8.2e-26, P = 8.2e-26
 Identities = 85/219 (38%), Positives = 125/219 (57%)

Query:    95 SYHALQILLSSNKLKSCIRSLYL-YLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK 153
             S  AL+ LL S++L  C++ + + YL  D++S+   T    +  L E++I  G  + ++ 
Sbjct:   672 SSSALEQLLCSHRLVRCLQKVSVKYL--DEESVRILT-LPSIGDLREVFI-GGCGMRDII 727

Query:   154 IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVG 213
             I+    +     P  F +L  V I  C+ LKD T+L FAPNL  L+++  R +EEIIS  
Sbjct:   728 IERNTSLTS---P-CFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEIISQE 783

Query:   214 KIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVR-ACDQLRKLPLD 272
             K +        I PF  L+ L L  LPELKSI+W PLPF  L ++ V+  C +L KLPLD
Sbjct:   784 KAST-----ADIVPFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLD 838

Query:   273 SNS---AKERKFVIRGEEDWWNRLQWEDEATQIAFR-SC 307
             S S   A E   +  G+E+W  R++WED+AT++ F  SC
Sbjct:   839 SQSCIVAGEELVIQYGDEEWKERVEWEDKATRLRFLPSC 877

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 78/213 (36%), Positives = 120/213 (56%)

Query:   102 LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI-V 160
             LL++ +L  C++   L L G ++         D+++LN++ I     + E+KI+   + +
Sbjct:   677 LLNAPRLVKCLQ--ILVLRGVQEESSGVLTLPDMDNLNKVIIRK-CGMCEIKIERKTLSL 733

Query:   161 RKRREPFV--FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAEN 218
                R P     H+L  V I SC  LKD T+L FAPNL SL +     +E II+     E 
Sbjct:   734 SSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIIN----QEK 789

Query:   219 PEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSA-K 277
                M  I PF+ L+SL L  L  L+SI+W+PL F  LK + +  C +LRKLPLDS  A +
Sbjct:   790 AMTMSGIIPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAIR 849

Query:   278 ERKFVIR-GEEDWWNRLQWEDEATQIAFRSCFQ 309
             + + VI+  EE+W  R++W++EAT++ F   F+
Sbjct:   850 DEELVIKYQEEEWLERVEWDNEATRLRFLPFFK 882

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 2.8e-25, P = 2.8e-25
 Identities = 82/210 (39%), Positives = 116/210 (55%)

Query:   103 LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRK 162
             LSS++L S  R L +Y  G   S ++        HL  L +    +L E +I    I   
Sbjct:   681 LSSHRLLSHSRLLEIY--GSSVSSLN-------RHLESLSVSTD-KLREFQIKSCSISEI 730

Query:   163 RREPFV-FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEM 221
             +      F SL  V I++C  L++ TFL FAP ++SLS++  + +E+II+  K  E  E 
Sbjct:   731 KMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEES 790

Query:   222 MGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAK--ER 279
              G I PF  L  L L  LP+LK I+W+PLPF  L+E+ +R C  LRKLPLDS S K  E 
Sbjct:   791 -G-ILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGEN 848

Query:   280 KFVIRGEED-WWNRLQWEDEATQIAFR-SC 307
               +IR ++  W+  ++W DEAT+  F  SC
Sbjct:   849 GCIIRNKDSRWFEGVKWADEATKKRFLPSC 878

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 82/209 (39%), Positives = 113/209 (54%)

Query:   102 LLSSNKLKSCIRSL-YLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160
             LL S +L  CI+ + + YL   K+  +       + +L +L I     + E+KI+ T   
Sbjct:   677 LLCSQRLVECIKEVDFKYL---KEESVRVLTLPTMGNLRKLGIKR-CGMREIKIERTTSS 732

Query:   161 RKR-REPFV--FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAE 217
               R + P    F +L  V I  CH LKD T+L FAPNL  L +   + +E+IIS  K AE
Sbjct:   733 SSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEK-AE 791

Query:   218 NPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNS-- 275
               E    I PF  L++L L  L  LK I+ K L F  LK + V  C++LRKLPLDS S  
Sbjct:   792 --EHSATIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGI 849

Query:   276 AKERKFVIRGEEDWWNRLQWEDEATQIAF 304
             A E   +  GE +W  R++WED+ATQ+ F
Sbjct:   850 AGEELVIYYGEREWIERVEWEDQATQLRF 878

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
 Identities = 73/213 (34%), Positives = 118/213 (55%)

Query:    99 LQILLSSNKLKSCIRSLYLY-LTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT 157
             L+ ++ +  L +C++ + +  L  D++        T ++ L  L + N  E+ E++I+  
Sbjct:   672 LEQMIDAGTLMNCMQEVSIRCLIYDQEQDTKLRLPT-MDSLRSLTMWN-CEISEIEIERL 729

Query:   158 EIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGK--- 214
                     P  F +L  V I+ C  LKD T+L FAPN+  L + +   ++E+IS  K   
Sbjct:   730 TWNTNPTSP-CFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATG 788

Query:   215 IAENPEMMGH-ISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDS 273
             + E  +   H I PF+ L+ L LS LPELKSI+W  L F  L  + V  C +LRKLPLDS
Sbjct:   789 VTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDS 848

Query:   274 NSAKE-RKFVIRGEE-DWWNRLQWEDEATQIAF 304
              +    +KFV++ +E +W   ++W+DEAT++ F
Sbjct:   849 KTGTVGKKFVLQYKETEWIESVEWKDEATKLHF 881

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 6.9e-24, P = 6.9e-24
 Identities = 70/157 (44%), Positives = 94/157 (59%)

Query:   151 ELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEII 210
             E+ I+ T   +    P  F +L  V I  C  LKD T+L FAPNL +L ++ C+ +E+II
Sbjct:   725 EIMIEKTPWKKNLTNPN-FSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDII 783

Query:   211 SVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGV-RACDQLRKL 269
             S  K A   E    I PF+ L+ L+L  L ELKSI+W  LPF  L+ + +   C +LRKL
Sbjct:   784 SKEKAASVLEK--EILPFQKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKL 841

Query:   270 PLDSNSA-KERKFVIR-GEEDWWNRLQWEDEATQIAF 304
             PLDS S  K  +FVI+  E+ W  R++WEDEATQ  F
Sbjct:   842 PLDSKSVVKVEEFVIKYKEKKWIERVEWEDEATQYRF 878

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 7.1e-24, P = 7.1e-24
 Identities = 80/213 (37%), Positives = 113/213 (53%)

Query:   103 LSSNKLKSCIRSLYLYLTGDKKSIIDATAF-TDLNHLNELWIDNGIELEELKIDYTEIVR 161
             LSS++L SCIR L +    ++       +    ++ L E  I++     E+K+    I  
Sbjct:   677 LSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEH-CHTSEIKMG--RICS 733

Query:   162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEM 221
                    F SL  V + +C +L++ TFL FAPNLK L +     +E+II+  K A + E 
Sbjct:   734 -------FSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEK-AHDGEK 785

Query:   222 MGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKE--R 279
              G I PF  L  L L  L ELK+I+W PLPF  L+++ V  C  L+KLPLDS S K    
Sbjct:   786 SG-IVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGN 844

Query:   280 KFVIRGEE-DWWNRLQWEDEATQIAF---RSCF 308
               +I   E +W  R++WEDEAT+  F   RS F
Sbjct:   845 GLIITHREMEWITRVEWEDEATKTRFLANRSSF 877

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
 Identities = 65/143 (45%), Positives = 90/143 (62%)

Query:   169 FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPF 228
             F SL  VTIY+C  L++ TFL FAP L+SLS+   + +E+II+  K  E  E  G I PF
Sbjct:   740 FLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEG-EDSG-IVPF 797

Query:   229 ENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAK--ERKFVIRGE 286
               LK L+L  LP+LK+I+ +PLPF  L+++ +  C  LRKLPLDS S K  E   +I  +
Sbjct:   798 PELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYK 857

Query:   287 EDWWNR-LQWEDEATQIAFR-SC 307
             +  W + ++W DEAT+  F  SC
Sbjct:   858 DSRWLKGVKWADEATKKRFLPSC 880

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 79/210 (37%), Positives = 116/210 (55%)

Query:    99 LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELW-IDN-GIELEELKIDY 156
             LQ LLS  +L S IR L+L  T    +I+D      LN +  L  +D  G  + E+ ID+
Sbjct:   654 LQRLLSIQRLASSIRRLHLTET----TIVDG-GILSLNAIFSLCELDILGCNILEITIDW 708

Query:   157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIA 216
                +++   P  F ++  +TI+ C  L+D T+L  AP L  LS+ +C  MEE+IS  K  
Sbjct:   709 RCTIQREIIP-QFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDKAM 767

Query:   217 ENPEMMGHIS--PFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSN 274
                  +G+ S  PF+NL  L L  LP+L+SI+W PLPF  L+ + +R C +LR+LP +S 
Sbjct:   768 AK---LGNTSEQPFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSE 824

Query:   275 SAKERKFVIRGEEDWWNRLQWEDEATQIAF 304
             S    +     EE     ++WEDEAT+  F
Sbjct:   825 STIGNQVETIIEEQVIKIVEWEDEATKQRF 854

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
 Identities = 72/208 (34%), Positives = 108/208 (51%)

Query:   103 LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRK 162
             LS N+  + + S+ L + G  +   D +    + +L+ LW+ N     E+K   +E    
Sbjct:   555 LSLNQRLANLISI-LGIEGFLQKPFDLSFLASMENLSSLWVKNSY-FSEIKCRESETASS 612

Query:   163 --RREPFV--FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAEN 218
               R  P +  F +L  + +  CH +KD T++ FAPNL  L +   R + EII+  K A N
Sbjct:   613 YLRINPKIPCFTNLSRLGLSKCHSIKDLTWILFAPNLVYLYIEDSREVGEIINKEK-ATN 671

Query:   219 PEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAK- 277
                +  I+PF  L+ L L  LP+L+SI+W PL F  L  + V  C +LRKLPL++ S   
Sbjct:   672 ---LTSITPFLKLERLILYNLPKLESIYWSPLHFPRLLIIHVLDCPKLRKLPLNATSVPL 728

Query:   278 ERKFVIRG-EEDWWNRLQWEDEATQIAF 304
               +F IR       N L+WEDE T+  F
Sbjct:   729 VEEFQIRMYPPGLGNELEWEDEDTKNRF 756

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.69
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.65
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.62
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.59
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.57
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.5
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.5
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.3
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.27
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.26
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.19
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.16
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.1
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.05
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.04
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.0
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.95
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.83
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG4341	483	consensus F-box protein containing LRR [General fu	98.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.74
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.72
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.68
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.63
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.5
KOG4341	483	consensus F-box protein containing LRR [General fu	98.49
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.01
PLN03150	623	hypothetical protein; Provisional	97.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.92
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.69
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.49
PLN03150	623	hypothetical protein; Provisional	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.44
PRK15386	426	type III secretion protein GogB; Provisional	97.41
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.18
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.15
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.63
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.46
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.72
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.59
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.22
smart00370	26	LRR Leucine-rich repeats, outliers.	95.06
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.06
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.7
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.13
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.18
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.86
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.6

>PLN03210 Resistant to P

Probab=99.72  E-value=3.9e-17  Score=164.93  Aligned_cols=240  Identities=20%  Similarity=0.233  Sum_probs=144.2

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc-cccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG-FIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |+++++.+..+|.+++.+++|++|+|+++..+..+|.  ++.+++|++|++.+|.. ..+|                ..+
T Consensus       616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp----------------~si  677 (1153)
T PLN03210        616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP----------------SSI  677 (1153)
T ss_pred             EECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc----------------hhh
Confidence            6777888888888888888888888888766777775  78888888888887654 3333                233


Q ss_pred             cCCCCceEEEEEec-ChhhHHHHhhcc-----------------cccccceEEEEeecCCCccccchhh-----------
Q 045137           81 LGLKYLEVLELTLG-SYHALQILLSSN-----------------KLKSCIRSLYLYLTGDKKSIIDATA-----------  131 (312)
Q Consensus        81 ~~L~~L~~l~l~~~-~~~~~~~l~~l~-----------------~l~~~L~~L~l~~~~~~~~~~~~~~-----------  131 (312)
                      ..+++|+.|+++.+ ....++...+++                 ....+|+.|++.+....   .++..           
T Consensus       678 ~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~---~lP~~~~l~~L~~L~l  754 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE---EFPSNLRLENLDELIL  754 (1153)
T ss_pred             hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc---cccccccccccccccc
Confidence            34444444444321 111111111111                 00113333433332110   00000           


Q ss_pred             -------------------hcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCC
Q 045137          132 -------------------FTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFA  192 (312)
Q Consensus       132 -------------------l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l  192 (312)
                                         ...+++|+.|++++|..+..++....          .+++|+.|++++|..+..+|....+
T Consensus       755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~----------~L~~L~~L~Ls~C~~L~~LP~~~~L  824 (1153)
T PLN03210        755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ----------NLHKLEHLEIENCINLETLPTGINL  824 (1153)
T ss_pred             cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh----------CCCCCCEEECCCCCCcCeeCCCCCc
Confidence                               00112444455544433333332211          6788888888888778777755578


Q ss_pred             CCCceEEEeeccccceecccC--------ccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCC
Q 045137          193 PNLKSLSLFKCRAMEEIISVG--------KIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACD  264 (312)
Q Consensus       193 ~~L~~L~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~  264 (312)
                      ++|++|++++|..+..+....        ....+..++.....+++|+.|++.+|++++.++.....+++|+.+++++|.
T Consensus       825 ~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        825 ESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            888888888887655432110        001112333356678899999999999999988878889999999999999


Q ss_pred             CCCCCCCC
Q 045137          265 QLRKLPLD  272 (312)
Q Consensus       265 ~L~~l~~~  272 (312)
                      +|+.++..
T Consensus       905 ~L~~~~l~  912 (1153)
T PLN03210        905 ALTEASWN  912 (1153)
T ss_pred             ccccccCC
Confidence            99876653

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.69  E-value=9.3e-17  Score=160.94  Aligned_cols=171  Identities=17%  Similarity=0.185  Sum_probs=96.8

Q ss_pred             cccCCCCCc-cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIR-ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |+|++|.+. .+|.+++.+++|++|++++|.....+|.. ++++++|++|++++|.+..               ..+..+
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~---------------~~p~~l  208 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVG---------------QIPREL  208 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcC---------------cCChHH
Confidence            566666665 56777777777777777777333345654 7777777777777776642               334556


Q ss_pred             cCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           81 LGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      ..+++|+.++++.+...  ....+.+++    +|+.|++.++....  ..+..++.+++|++|+++++.-...++ ..+.
T Consensus       209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~----~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~  281 (968)
T PLN00113        209 GQMKSLKWIYLGYNNLSGEIPYEIGGLT----SLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIF  281 (968)
T ss_pred             cCcCCccEEECcCCccCCcCChhHhcCC----CCCEEECcCceecc--ccChhHhCCCCCCEEECcCCeeeccCc-hhHh
Confidence            66667777766654332  223445555    66677666553211  222456666677777766542211111 1111


Q ss_pred             cccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeecc
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~  204 (312)
                               .+++|++|++++|.....+| .+..+++|++|++.+|.
T Consensus       282 ---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        282 ---------SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             ---------hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence                     45666666666662222344 45556666666665554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.65  E-value=5.5e-16  Score=155.38  Aligned_cols=232  Identities=19%  Similarity=0.150  Sum_probs=126.2

Q ss_pred             CcccCCCCCc-cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIR-ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+..               ..+..
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---------------~~p~~  231 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG---------------EIPYE  231 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC---------------cCChh
Confidence            4789999876 78899999999999999999444457776 8999999999999988752               33445


Q ss_pred             ccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137           80 LLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT  157 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~  157 (312)
                      +..+++|+.|+++.+...  ....+.+++    +|+.|++.++....  ..+..+..+++|++|+++++. +.......+
T Consensus       232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~----~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~  304 (968)
T PLN00113        232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLK----NLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNS-LSGEIPELV  304 (968)
T ss_pred             HhcCCCCCEEECcCceeccccChhHhCCC----CCCEEECcCCeeec--cCchhHhhccCcCEEECcCCe-eccCCChhH
Confidence            566666777766654332  222444555    56666666543211  122345556666666666542 221111111


Q ss_pred             ccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccC-ccccC-----------CCCCCC
Q 045137          158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVG-KIAEN-----------PEMMGH  224 (312)
Q Consensus       158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~-----------~~~~~~  224 (312)
                      .         .+++|+.|++++|.....+| .+..+++|+.|++++|.....+.... ....+           ......
T Consensus       305 ~---------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        305 I---------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             c---------CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            1         44555555555552222233 34445555555555443321110000 00000           000012


Q ss_pred             CccCCCcCeeeccccccccccccCCcCCCCccEEEecCCC
Q 045137          225 ISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACD  264 (312)
Q Consensus       225 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~  264 (312)
                      ...+++|+.|.+.++.-...++.....+++|+.|++.+|.
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~  415 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS  415 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence            2234556666666543222333334567778888877764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.62  E-value=4.7e-16  Score=150.69  Aligned_cols=292  Identities=32%  Similarity=0.468  Sum_probs=190.9

Q ss_pred             CcccCCC-CCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCC-c----------c
Q 045137            1 LLDISHT-TIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPED-S----------V   68 (312)
Q Consensus         1 ~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~-~----------~   68 (312)
                      +||||+| .+.++|++|+.|.+||||+++++ .+.++|.+ +++++.|++|++..+........+.. .          .
T Consensus       575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             EEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            4799977 67899999999999999999999 89999998 99999999999987765432211100 0          0


Q ss_pred             ccCCccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcC
Q 045137           69 LFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIE  148 (312)
Q Consensus        69 ~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  148 (312)
                      ....+.....++..|++|+.+.+..........+..+..+....+.+.+.+   .........+..+.+|+.|.+.+|..
T Consensus       653 ~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~---~~~~~~~~~~~~l~~L~~L~i~~~~~  729 (889)
T KOG4658|consen  653 ALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG---CSKRTLISSLGSLGNLEELSILDCGI  729 (889)
T ss_pred             ccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc---cccceeecccccccCcceEEEEcCCC
Confidence            011233444455555555555554333322233333332222333333322   12223336778889999999998865


Q ss_pred             cceeeeeccccccccCCCCc-ccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCcc
Q 045137          149 LEELKIDYTEIVRKRREPFV-FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISP  227 (312)
Q Consensus       149 l~~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (312)
                      .+... .+...   .... . |+++..+.+.+|+..+++.|....|+|++|.+..|...+++++......  ........
T Consensus       730 ~e~~~-~~~~~---~~~~-~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~--~l~~~i~~  802 (889)
T KOG4658|consen  730 SEIVI-EWEES---LIVL-LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL--ELKELILP  802 (889)
T ss_pred             chhhc-ccccc---cchh-hhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh--hcccEEec
Confidence            43221 11100   0000 2 6788888889998888877888899999999999999999877543321  11112455


Q ss_pred             CCCcCee-eccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCcccccc--ceEeeehH-hhhhhccccchhhhhc
Q 045137          228 FENLKSL-DLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKER--KFVIRGEE-DWWNRLQWEDEATQIA  303 (312)
Q Consensus       228 ~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~--l~~i~~~~-~~~~~~~~~~~~~~~~  303 (312)
                      |+.+..+ .+.+.+.+..+......+++|+.+.+..||++..+|.........  -..+.+++ +|-+.+.|++++|...
T Consensus       803 f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  882 (889)
T KOG4658|consen  803 FNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLR  882 (889)
T ss_pred             ccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhh
Confidence            6667777 577777777777666678889999999999999999865544322  33444444 4556699999999877


Q ss_pred             c
Q 045137          304 F  304 (312)
Q Consensus       304 ~  304 (312)
                      |
T Consensus       883 ~  883 (889)
T KOG4658|consen  883 F  883 (889)
T ss_pred             c
Confidence            6

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.59  E-value=3.9e-17  Score=146.87  Aligned_cols=236  Identities=20%  Similarity=0.214  Sum_probs=128.6

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ||||+|++.+.|.++..-+++.+|||++| .|..||..++-++..|-.|++++|.+..+|                ..+.
T Consensus       108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LP----------------PQ~R  170 (1255)
T KOG0444|consen  108 LDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLP----------------PQIR  170 (1255)
T ss_pred             eecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcC----------------HHHH
Confidence            67888888888888888888888888888 788888887788888888888888776544                3444


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEe------------------
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWI------------------  143 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l------------------  143 (312)
                      .|.+|++|.++.+....++ +..++.+. +|+.|.+++..+ +...++.++..+.+|+.+++                  
T Consensus       171 RL~~LqtL~Ls~NPL~hfQ-LrQLPsmt-sL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~L  247 (1255)
T KOG0444|consen  171 RLSMLQTLKLSNNPLNHFQ-LRQLPSMT-SLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNL  247 (1255)
T ss_pred             HHhhhhhhhcCCChhhHHH-HhcCccch-hhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhh
Confidence            5555566666655543332 22233111 333344443322 22233344444444444444                  


Q ss_pred             -----ccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCcc--
Q 045137          144 -----DNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKI--  215 (312)
Q Consensus       144 -----~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~--  215 (312)
                           +++ .++.+....-          ...+|..|+++.| .++.+| .+-++++|+.|...++...-+-+++..+  
T Consensus       248 rrLNLS~N-~iteL~~~~~----------~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  248 RRLNLSGN-KITELNMTEG----------EWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             heeccCcC-ceeeeeccHH----------HHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence                 433 3333332221          3455666666665 555555 5556677777766555432222221100  


Q ss_pred             c----------cCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCC
Q 045137          216 A----------ENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLP  270 (312)
Q Consensus       216 ~----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~  270 (312)
                      .          .+.-++..+.-|++|+.|.+.. +.|-.++....-++.|+.|++...++|..-|
T Consensus       316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            0          0000011223344555555533 3455555555567777777777777777433

>PLN03210 Resistant to P

Probab=99.57  E-value=2.8e-14  Score=144.43  Aligned_cols=47  Identities=19%  Similarity=0.384  Sum_probs=30.6

Q ss_pred             CCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCC
Q 045137          224 HISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPL  271 (312)
Q Consensus       224 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  271 (312)
                      ..+.+++|+.|++.+|..++.++... .+++|+.|++++|.+++.+|.
T Consensus       797 si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence            34556777777777777776665443 466777777777776665553

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.54  E-value=5.4e-16  Score=138.41  Aligned_cols=244  Identities=18%  Similarity=0.201  Sum_probs=125.1

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      ||||-|.|+++| .+|..=.++++|+|++| .|+.+..+.|..+.+|.+|.++.|.+..+|               +..+
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp---------------~r~F  217 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLP---------------QRSF  217 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccC---------------HHHh
Confidence            567777777766 55555567777777777 677666666777777777777777665533               3334


Q ss_pred             cCCCCceEEEEEecChh-----hHHHHhhcccc---c--------------ccceEEEEeecCCCccccchhhhcCcccc
Q 045137           81 LGLKYLEVLELTLGSYH-----ALQILLSSNKL---K--------------SCIRSLYLYLTGDKKSIIDATAFTDLNHL  138 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~-----~~~~l~~l~~l---~--------------~~L~~L~l~~~~~~~~~~~~~~l~~l~~L  138 (312)
                      ++|++|+.|++..+.+.     .|+++..+..+   +              ..+++|++.... ...+.. ..+.++..|
T Consensus       218 k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~-g~lfgLt~L  295 (873)
T KOG4194|consen  218 KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNE-GWLFGLTSL  295 (873)
T ss_pred             hhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhc-ccccccchh
Confidence            44555555554433321     22222211111   0              133333333221 111111 234455666


Q ss_pred             ceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceeccc----
Q 045137          139 NELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISV----  212 (312)
Q Consensus       139 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~----  212 (312)
                      +.|+++.+ .+..+......         ++++|+.|+|++| .++.++  .+..+..|+.|.++++......-+.    
T Consensus       296 ~~L~lS~N-aI~rih~d~Ws---------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l  364 (873)
T KOG4194|consen  296 EQLDLSYN-AIQRIHIDSWS---------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL  364 (873)
T ss_pred             hhhccchh-hhheeecchhh---------hcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence            66666643 45555444333         6677777777776 666554  3444555555555444321000000    


Q ss_pred             Cccc---------cC--CCCCCCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCCCCCCCCCccc
Q 045137          213 GKIA---------EN--PEMMGHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSA  276 (312)
Q Consensus       213 ~~~~---------~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~  276 (312)
                      ....         ++  ......-.+++.|+.|.+.+ ++++.++.. +..++.||.|++.+ ..+.++....+..
T Consensus       365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEP  438 (873)
T ss_pred             hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeeccccccc
Confidence            0000         00  00001223478888888877 467777644 44577888888877 3455555554444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.50  E-value=8.9e-15  Score=130.76  Aligned_cols=246  Identities=21%  Similarity=0.193  Sum_probs=151.2

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      ||+|+|.+.++. ++|.++++|+.+++.+| .+..+|.. ..-..+|+.|++.+|.+..               ..-+.+
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f-~~~sghl~~L~L~~N~I~s---------------v~se~L  145 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRF-GHESGHLEKLDLRHNLISS---------------VTSEEL  145 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccc-cccccceeEEeeecccccc---------------ccHHHH
Confidence            789999998874 88899999999999999 89999984 5556679999999998854               444567


Q ss_pred             cCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           81 LGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      ..+.-|+.++++.+.+..++  .+.+..    ++++|++...+ ++.... ..+..+.+|..|.++.+ .++.++...++
T Consensus       146 ~~l~alrslDLSrN~is~i~~~sfp~~~----ni~~L~La~N~-It~l~~-~~F~~lnsL~tlkLsrN-rittLp~r~Fk  218 (873)
T KOG4194|consen  146 SALPALRSLDLSRNLISEIPKPSFPAKV----NIKKLNLASNR-ITTLET-GHFDSLNSLLTLKLSRN-RITTLPQRSFK  218 (873)
T ss_pred             HhHhhhhhhhhhhchhhcccCCCCCCCC----CceEEeecccc-cccccc-ccccccchheeeecccC-cccccCHHHhh
Confidence            77777888888766554443  222323    77888777643 333333 45566667777777754 66666666554


Q ss_pred             cccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceeccc----CccccC-------C-CCCCC
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISV----GKIAEN-------P-EMMGH  224 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~-------~-~~~~~  224 (312)
                               .+++|+.|+|..| .++-+.  .+.++++|+.|++..+.....--+.    .....+       . .....
T Consensus       219 ---------~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  219 ---------RLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             ---------hcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence                     5777777777766 555543  4556777777776655422111000    000000       0 00012


Q ss_pred             CccCCCcCeeeccccccccccccCC-cCCCCccEEEecCCCCCCCCCCCCccccccceEe
Q 045137          225 ISPFENLKSLDLSYLPELKSIFWKP-LPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVI  283 (312)
Q Consensus       225 ~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i  283 (312)
                      .-++.+|++|++++. .+..+.... .-+++|+.|++++ .++++++.+.......+++.
T Consensus       289 lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             ccccchhhhhccchh-hhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhh
Confidence            334556666666653 344443332 2256777777776 56777776666554444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.50  E-value=1.4e-15  Score=136.92  Aligned_cols=234  Identities=18%  Similarity=0.115  Sum_probs=151.3

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccC----CCC---ccccC--
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEA----PED---SVLFG--   71 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~----~~~---~~~~~--   71 (312)
                      |+||+|+|..+| +-|-+|.-|-+|||++| .+..+|+. +.++.+|++|.+++|.+.-+...    ...   +-+.+  
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence            789999999999 66779999999999999 89999998 99999999999999876432110    000   01111  


Q ss_pred             -CccchhhhccCCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCc
Q 045137           72 -GGEVLIQELLGLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIEL  149 (312)
Q Consensus        72 -~~~~~~~~l~~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l  149 (312)
                       .....+..+..|.+|+.++++.++...++ .+.+++    +|++|++++... +...  ...+...+|++|+++.+ ++
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~----~LrrLNLS~N~i-teL~--~~~~~W~~lEtLNlSrN-QL  280 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR----NLRRLNLSGNKI-TELN--MTEGEWENLETLNLSRN-QL  280 (1255)
T ss_pred             chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh----hhheeccCcCce-eeee--ccHHHHhhhhhhccccc-hh
Confidence             12334455666778888888877665554 456677    888998887532 2222  24455678999999975 77


Q ss_pred             ceeeeeccccccccCCCCcccccceEeecCCCCcc--cCC-ccCCCCCCceEEEeeccccceeccc-C--------cc--
Q 045137          150 EELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLK--DST-FLAFAPNLKSLSLFKCRAMEEIISV-G--------KI--  215 (312)
Q Consensus       150 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~-~l~~l~~L~~L~l~~~~~~~~~~~~-~--------~~--  215 (312)
                      ..++....          .+++|+.|++.+| ++.  .+| -+|++.+|+.++..++. ++.+... .        ..  
T Consensus       281 t~LP~avc----------KL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~  348 (1255)
T KOG0444|consen  281 TVLPDAVC----------KLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDH  348 (1255)
T ss_pred             ccchHHHh----------hhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccc
Confidence            77775555          7899999999888 443  366 46666666655554432 1111000 0        00  


Q ss_pred             ccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccE
Q 045137          216 AENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKE  257 (312)
Q Consensus       216 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  257 (312)
                      ..+-.++..+..++-|+.|++...++|---+....+-..|+-
T Consensus       349 NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lef  390 (1255)
T KOG0444|consen  349 NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEF  390 (1255)
T ss_pred             cceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhccee
Confidence            000011235677899999999999888544433333344443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.30  E-value=2.7e-13  Score=116.47  Aligned_cols=95  Identities=17%  Similarity=0.097  Sum_probs=65.4

Q ss_pred             cccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccC----------ccccCCCCCC-CCccCCCcCeee
Q 045137          168 VFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVG----------KIAENPEMMG-HISPFENLKSLD  235 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~L~~L~  235 (312)
                      .+++|+.|+++++ .+.++| .++.+-.|+.|+|+.+..-..+-...          .......+.. ....+.+|..|+
T Consensus       433 ~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD  511 (565)
T KOG0472|consen  433 QLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD  511 (565)
T ss_pred             hhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence            7888999999888 777788 77788889999988764322211100          0000011111 356678888888


Q ss_pred             ccccccccccccCCcCCCCccEEEecCCC
Q 045137          236 LSYLPELKSIFWKPLPFTHLKEMGVRACD  264 (312)
Q Consensus       236 l~~~~~l~~~~~~~~~~~~L~~L~i~~c~  264 (312)
                      +.+ ..+..++...+.+.+|++|++.+.+
T Consensus       512 L~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  512 LQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             cCC-CchhhCChhhccccceeEEEecCCc
Confidence            877 5788898889999999999998854

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.27  E-value=1.3e-13  Score=105.47  Aligned_cols=153  Identities=18%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecCh
Q 045137           17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY   96 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~   96 (312)
                      -.+.+.+.|.|++| .+..+|++ |..+.+|+.|++.+|++.++|                ..+..+++|+.+++..+..
T Consensus        30 f~~s~ITrLtLSHN-Kl~~vppn-ia~l~nlevln~~nnqie~lp----------------~~issl~klr~lnvgmnrl   91 (264)
T KOG0617|consen   30 FNMSNITRLTLSHN-KLTVVPPN-IAELKNLEVLNLSNNQIEELP----------------TSISSLPKLRILNVGMNRL   91 (264)
T ss_pred             cchhhhhhhhcccC-ceeecCCc-HHHhhhhhhhhcccchhhhcC----------------hhhhhchhhhheecchhhh
Confidence            34445555555665 55555555 556666666666555554322                3334444455554443322


Q ss_pred             hhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceE
Q 045137           97 HALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLV  175 (312)
Q Consensus        97 ~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L  175 (312)
                      ...+ .+..++    .|+.|++.+..- .....+..+..|..|+.|++++. ..+.++...-          .+.+|+.|
T Consensus        92 ~~lprgfgs~p----~levldltynnl-~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg----------~lt~lqil  155 (264)
T KOG0617|consen   92 NILPRGFGSFP----ALEVLDLTYNNL-NENSLPGNFFYMTTLRALYLGDN-DFEILPPDVG----------KLTNLQIL  155 (264)
T ss_pred             hcCccccCCCc----hhhhhhcccccc-ccccCCcchhHHHHHHHHHhcCC-CcccCChhhh----------hhcceeEE
Confidence            1111 222222    233333332211 11111122333445555555543 3444433322          45555555


Q ss_pred             eecCCCCcccCC-ccCCCCCCceEEEeecc
Q 045137          176 TIYSCHKLKDST-FLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       176 ~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~  204 (312)
                      .++++ ++-.+| .++.+..|+.|+|.++.
T Consensus       156 ~lrdn-dll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  156 SLRDN-DLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             eeccC-chhhCcHHHHHHHHHHHHhcccce
Confidence            55555 333444 55555566666655554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.26  E-value=2.7e-11  Score=115.75  Aligned_cols=53  Identities=21%  Similarity=0.284  Sum_probs=43.4

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY   61 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~   61 (312)
                      |+++++.++.+|..+.  .+|+.|++.+| .++.+|..    +++|++|++++|.+..+|
T Consensus       206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l----p~~Lk~LdLs~N~LtsLP  258 (788)
T PRK15387        206 LNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPAL----PPELRTLEVSGNQLTSLP  258 (788)
T ss_pred             EEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCCC----CCCCcEEEecCCccCccc
Confidence            6889999999998775  48999999998 78888863    578999999998887654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.21  E-value=5.4e-14  Score=120.68  Aligned_cols=240  Identities=21%  Similarity=0.184  Sum_probs=116.4

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccC-------Ccc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFG-------GGE   74 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-------~~~   74 (312)
                      |.+++|.+..+...+.+|..|.+|++++| .+..+|+. ++.+..++.++.++|++.++|.++.......       ...
T Consensus        50 lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~  127 (565)
T KOG0472|consen   50 LILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK  127 (565)
T ss_pred             hhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee
Confidence            45667777777667777777777777777 66677765 7777777777777777665554332221110       011


Q ss_pred             chhhhccCCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceee
Q 045137           75 VLIQELLGLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK  153 (312)
Q Consensus        75 ~~~~~l~~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~  153 (312)
                      ..+..++.+-.++.++...+...+.+ .+.++.    .+..+.+.+.   .....++..-.|+.|+.|+..++ .++.++
T Consensus       128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~----~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP  199 (565)
T KOG0472|consen  128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS----KLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSN-LLETLP  199 (565)
T ss_pred             ecCchHHHHhhhhhhhccccccccCchHHHHHH----HHHHhhcccc---chhhCCHHHHHHHHHHhcccchh-hhhcCC
Confidence            11222222222332222222221111 222222    1222222211   11111122222445555554332 333333


Q ss_pred             eeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCe
Q 045137          154 IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKS  233 (312)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  233 (312)
                      .+.-          .+.+|..|++..+ ++..+|.++++..|+++++..+.. +.+ +.          .....++++..
T Consensus       200 ~~lg----------~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i-~~l-pa----------e~~~~L~~l~v  256 (565)
T KOG0472|consen  200 PELG----------GLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQI-EML-PA----------EHLKHLNSLLV  256 (565)
T ss_pred             hhhc----------chhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHH-Hhh-HH----------HHhccccccee
Confidence            2221          4555666666665 555566666666666666544432 211 10          13345566666


Q ss_pred             eeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccc
Q 045137          234 LDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSA  276 (312)
Q Consensus       234 L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~  276 (312)
                      |++.+ .++++.+++..-+.+|+.|++++ ..++.+|....+.
T Consensus       257 LDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl  297 (565)
T KOG0472|consen  257 LDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL  297 (565)
T ss_pred             eeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccc
Confidence            66666 35666666655566666666665 3555555544433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.19  E-value=1e-11  Score=120.85  Aligned_cols=219  Identities=24%  Similarity=0.290  Sum_probs=123.1

Q ss_pred             Ccccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCce
Q 045137            9 IRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLE   87 (312)
Q Consensus         9 i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~   87 (312)
                      +..++ +.|..++.|++|||++|..+..+|.. |+.+-+||+|+++++.+..+                +.++++|+.|.
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~L----------------P~~l~~Lk~L~  621 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHL----------------PSGLGNLKKLI  621 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCcccc----------------chHHHHHHhhh
Confidence            55666 44889999999999999899999998 99999999999999988754                45667777777


Q ss_pred             EEEEEecCh-hhHHHH-hhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCC
Q 045137           88 VLELTLGSY-HALQIL-LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRRE  165 (312)
Q Consensus        88 ~l~l~~~~~-~~~~~l-~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~  165 (312)
                      .|++...+. ..++.. ..+.    +||.|.+.......+......+..+.+|+.+.+..... . +.....        
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~----~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e~l~--------  687 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQ----SLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-L-LLEDLL--------  687 (889)
T ss_pred             eeccccccccccccchhhhcc----cccEEEeeccccccchhhHHhhhcccchhhheeecchh-H-hHhhhh--------
Confidence            777765432 122222 2244    77777777544223333334555666666666653322 0 000001        


Q ss_pred             CCcccccc----eEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCc-cCCCcCeeeccccc
Q 045137          166 PFVFHSLH----LVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHIS-PFENLKSLDLSYLP  240 (312)
Q Consensus       166 ~~~~~~L~----~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~  240 (312)
                        ...+|.    .+.+.+|...+....++.+.+|++|.|.+|...+..+.....       .... .|+++..+...+|.
T Consensus       688 --~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-------~~~~~~f~~l~~~~~~~~~  758 (889)
T KOG4658|consen  688 --GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES-------LIVLLCFPNLSKVSILNCH  758 (889)
T ss_pred             --hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc-------cchhhhHHHHHHHHhhccc
Confidence              222222    233333323333446677778888888777664432210000       0111 24445554444554


Q ss_pred             cccccccCCcCCCCccEEEecCCCCCCC
Q 045137          241 ELKSIFWKPLPFTHLKEMGVRACDQLRK  268 (312)
Q Consensus       241 ~l~~~~~~~~~~~~L~~L~i~~c~~L~~  268 (312)
                      .++..... .-.|+|++|.+..|+.+.+
T Consensus       759 ~~r~l~~~-~f~~~L~~l~l~~~~~~e~  785 (889)
T KOG4658|consen  759 MLRDLTWL-LFAPHLTSLSLVSCRLLED  785 (889)
T ss_pred             cccccchh-hccCcccEEEEeccccccc
Confidence            44443221 2245555555555555444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.16  E-value=1.4e-12  Score=122.45  Aligned_cols=55  Identities=33%  Similarity=0.425  Sum_probs=34.3

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG   57 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~   57 (312)
                      |+++|+|.++.+|+.++.+.+|+.+++.+| .+..+|.. +..+.+|+.|.+..|.+
T Consensus       245 ~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~r-i~~~~~L~~l~~~~nel  299 (1081)
T KOG0618|consen  245 YLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLR-ISRITSLVSLSAAYNEL  299 (1081)
T ss_pred             eeecchhhhhcchHHHHhcccceEecccch-hHHhhHHH-HhhhhhHHHHHhhhhhh
Confidence            456677777777777777777777777766 55555544 55555555555555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.12  E-value=1.4e-10  Score=110.97  Aligned_cols=220  Identities=17%  Similarity=0.109  Sum_probs=114.8

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      |++++|+++.+|.   ..++|++|++++| .+..+|..    .++|+.|++.+|.+..+|..+..+.........+..+.
T Consensus       227 L~L~~N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP  298 (788)
T PRK15387        227 LVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPVL----PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP  298 (788)
T ss_pred             EEccCCcCCCCCC---CCCCCcEEEecCC-ccCcccCc----ccccceeeccCCchhhhhhchhhcCEEECcCCcccccc
Confidence            6788899999985   3689999999999 88888753    36788888888877665432111110000000111111


Q ss_pred             -CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc-
Q 045137           82 -GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI-  159 (312)
Q Consensus        82 -~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~-  159 (312)
                       .+++|+.|+++.+....++.+      ...|+.|.+.++....   + +.  ...+|++|+++++ .+..++...... 
T Consensus       299 ~~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L~~---L-P~--lp~~Lq~LdLS~N-~Ls~LP~lp~~L~  365 (788)
T PRK15387        299 VLPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLTS---L-PT--LPSGLQELSVSDN-QLASLPTLPSELY  365 (788)
T ss_pred             ccccccceeECCCCccccCCCC------cccccccccccCcccc---c-cc--cccccceEecCCC-ccCCCCCCCcccc
Confidence             124577777766554433221      1145555555432111   1 00  1136777777654 444332110000 


Q ss_pred             --------ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCc
Q 045137          160 --------VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL  231 (312)
Q Consensus       160 --------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  231 (312)
                              ....+.  ...+|+.|++++| .+..+|..  .++|+.|++++|.. ..+ +              ..+.+|
T Consensus       366 ~L~Ls~N~L~~LP~--l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~L-ssI-P--------------~l~~~L  424 (788)
T PRK15387        366 KLWAYNNRLTSLPA--LPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNRL-TSL-P--------------MLPSGL  424 (788)
T ss_pred             eehhhccccccCcc--cccccceEEecCC-cccCCCCc--ccCCCEEEccCCcC-CCC-C--------------cchhhh
Confidence                    000111  2235556666655 44444422  24566666665542 211 1              112456


Q ss_pred             CeeeccccccccccccCCcCCCCccEEEecCCC
Q 045137          232 KSLDLSYLPELKSIFWKPLPFTHLKEMGVRACD  264 (312)
Q Consensus       232 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~  264 (312)
                      +.|+++++ .++.++.....+++|+.+++++++
T Consensus       425 ~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        425 LSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence            77777663 566666666677888888887753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.10  E-value=1.1e-10  Score=112.10  Aligned_cols=53  Identities=13%  Similarity=0.192  Sum_probs=27.5

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF   60 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~   60 (312)
                      |+++++.++.+|..+.  ++|+.|+|++| .+..+|.. +.  .+|++|++++|.+..+
T Consensus       183 L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~-l~--~nL~~L~Ls~N~LtsL  235 (754)
T PRK15370        183 LRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPEN-LQ--GNIKTLYANSNQLTSI  235 (754)
T ss_pred             EEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChh-hc--cCCCEEECCCCccccC
Confidence            3455555555554332  35556666665 55555554 21  3555666655555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.05  E-value=1.4e-11  Score=105.73  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEec-ccccccccCC
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLG-TGGFIFYEAP   64 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~-~~~~~~~~~~   64 (312)
                      ++|.-|.|+.|| +.|+.+++|+.|||++| .|..|.+++|.++++|..|-+.+ |.++.+|...
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            567889999998 88999999999999999 89999888899999998888877 8888776543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.04  E-value=6.8e-10  Score=106.65  Aligned_cols=203  Identities=19%  Similarity=0.191  Sum_probs=138.8

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      |+|++|.++.+|..+.  .+|++|++++| .+..+|.. +.  .+|+.|++++|.+..+|.                .+.
T Consensus       204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~-l~--~~L~~L~Ls~N~L~~LP~----------------~l~  261 (754)
T PRK15370        204 LILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPAT-LP--DTIQEMELSINRITELPE----------------RLP  261 (754)
T ss_pred             EEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChh-hh--ccccEEECcCCccCcCCh----------------hHh
Confidence            7889999999997665  59999999999 78889876 43  479999999998876542                111


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                        .+|+.|+++.+....++.  .+   ..+|+.|+++++.-..   ++..+  .++|+.|+++++ .+..++..      
T Consensus       262 --s~L~~L~Ls~N~L~~LP~--~l---~~sL~~L~Ls~N~Lt~---LP~~l--p~sL~~L~Ls~N-~Lt~LP~~------  322 (754)
T PRK15370        262 --SALQSLDLFHNKISCLPE--NL---PEELRYLSVYDNSIRT---LPAHL--PSGITHLNVQSN-SLTALPET------  322 (754)
T ss_pred             --CCCCEEECcCCccCcccc--cc---CCCCcEEECCCCcccc---Ccccc--hhhHHHHHhcCC-ccccCCcc------
Confidence              367888888776654442  11   1278899988763221   11111  246888888865 55544321      


Q ss_pred             ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE  241 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  241 (312)
                            .+++|+.|++++| .++.+|. .-.++|+.|++++|.. ..+ +             ....+.|++|+++++ .
T Consensus       323 ------l~~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N~L-~~L-P-------------~~lp~~L~~LdLs~N-~  378 (754)
T PRK15370        323 ------LPPGLKTLEAGEN-ALTSLPA-SLPPELQVLDVSKNQI-TVL-P-------------ETLPPTITTLDVSRN-A  378 (754)
T ss_pred             ------ccccceeccccCC-ccccCCh-hhcCcccEEECCCCCC-CcC-C-------------hhhcCCcCEEECCCC-c
Confidence                  4578999999998 6777772 1137999999998864 322 1             112368999999986 5


Q ss_pred             ccccccCCcCCCCccEEEecCCCCCCCCCCC
Q 045137          242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLD  272 (312)
Q Consensus       242 l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~  272 (312)
                      +..++...  .+.|+.|+++++ +|+.+|..
T Consensus       379 Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~s  406 (754)
T PRK15370        379 LTNLPENL--PAALQIMQASRN-NLVRLPES  406 (754)
T ss_pred             CCCCCHhH--HHHHHHHhhccC-CcccCchh
Confidence            66665432  246888999884 77887754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.00  E-value=1.8e-10  Score=101.06  Aligned_cols=180  Identities=20%  Similarity=0.125  Sum_probs=84.4

Q ss_pred             cccCCCCCc--cccHHhhCCCCCcEEecCCCCCcc-----ccCchhhhccccccEEEEecccccccccCCCCccccCCcc
Q 045137            2 LDISHTTIR--ELPEELKLLVNLKCLNLRWTGALI-----RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGE   74 (312)
Q Consensus         2 L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~-----~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   74 (312)
                      |+|.++.++  ..+.-+..+.+|+.|++++| .+.     .++.. +...++|+++++.++.+...+..         ..
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~---------~~   71 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRG---------LQ   71 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchH---------HH
Confidence            455555553  34455566666777777777 442     23332 45556677777666544310000         01


Q ss_pred             chhhhccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCc--cccchhhhcCc-cccceEEeccCcCc
Q 045137           75 VLIQELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKK--SIIDATAFTDL-NHLNELWIDNGIEL  149 (312)
Q Consensus        75 ~~~~~l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~--~~~~~~~l~~l-~~L~~L~l~~~~~l  149 (312)
                      .....+..+.+|+.++++.+...  ....+..+... .+|++|+++++....  ...+...+..+ ++|+.|++++|. +
T Consensus        72 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l  149 (319)
T cd00116          72 SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-L  149 (319)
T ss_pred             HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-C
Confidence            22234445666666666644332  11222222211 136666666653221  01111334444 566777776653 2


Q ss_pred             ceeee----eccccccccCCCCcccccceEeecCCCCccc--CC----ccCCCCCCceEEEeecc
Q 045137          150 EELKI----DYTEIVRKRREPFVFHSLHLVTIYSCHKLKD--ST----FLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       150 ~~l~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~----~l~~l~~L~~L~l~~~~  204 (312)
                      .....    ..+.         .+++|++|++++| .+.+  ++    .+..+++|++|++++|.
T Consensus       150 ~~~~~~~~~~~~~---------~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         150 EGASCEALAKALR---------ANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             CchHHHHHHHHHH---------hCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence            21100    0111         3456666666666 4432  11    23334566666666664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.96  E-value=1.9e-11  Score=93.71  Aligned_cols=153  Identities=25%  Similarity=0.300  Sum_probs=115.7

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      |.||+|.++.+|..|..|++|+.|++.+| .+..+|.+ ++.+++|++|++.-|...                ..+.+++
T Consensus        38 LtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmnrl~----------------~lprgfg   99 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMNRLN----------------ILPRGFG   99 (264)
T ss_pred             hhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchhhhh----------------cCccccC
Confidence            57899999999999999999999999999 99999998 999999999999988765                4567778


Q ss_pred             CCCCceEEEEEecChh--hHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           82 GLKYLEVLELTLGSYH--ALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~--~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      .++-|+++++..+...  .++ .+..+.    .|+.|++++.   ....++..++++.+|+-|.+.+. .+-.++.+.- 
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~----tlralyl~dn---dfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig-  170 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMT----TLRALYLGDN---DFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIG-  170 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHH----HHHHHHhcCC---CcccCChhhhhhcceeEEeeccC-chhhCcHHHH-
Confidence            8888999998866442  122 233333    4555655543   44555578888999999998876 4444443332 


Q ss_pred             cccccCCCCcccccceEeecCCCCcccCC-ccCC
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAF  191 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~  191 (312)
                               .+.+|++|++.++ +++-+| .++.
T Consensus       171 ---------~lt~lrelhiqgn-rl~vlppel~~  194 (264)
T KOG0617|consen  171 ---------DLTRLRELHIQGN-RLTVLPPELAN  194 (264)
T ss_pred             ---------HHHHHHHHhcccc-eeeecChhhhh
Confidence                     6889999999998 777766 4443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.95  E-value=2e-11  Score=114.81  Aligned_cols=208  Identities=22%  Similarity=0.199  Sum_probs=142.0

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcccc--CCccchhhh
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLF--GGGEVLIQE   79 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~   79 (312)
                      ++..+|.+..+|..+....+|++|.+..| .+.++|+. ..+++.|++|++..|.+..+|..+......  .........
T Consensus       269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~  346 (1081)
T KOG0618|consen  269 LNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK  346 (1081)
T ss_pred             ecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence            56678899999999999999999999999 89999986 788999999999999998777532111100  000000001


Q ss_pred             ccC--------CCCceEEEEEec--ChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCc
Q 045137           80 LLG--------LKYLEVLELTLG--SYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIEL  149 (312)
Q Consensus        80 l~~--------L~~L~~l~l~~~--~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l  149 (312)
                      +..        +..|+.|++..+  +...++.+...+    +||.|++++..-.. +.- ..+.++..|+.|+++++ .+
T Consensus       347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~----hLKVLhLsyNrL~~-fpa-s~~~kle~LeeL~LSGN-kL  419 (1081)
T KOG0618|consen  347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK----HLKVLHLSYNRLNS-FPA-SKLRKLEELEELNLSGN-KL  419 (1081)
T ss_pred             ccccccccchhhHHHHHHHHhcCcccccchhhhcccc----ceeeeeeccccccc-CCH-HHHhchHHhHHHhcccc-hh
Confidence            111        112333333322  223566666666    88888888764322 222 57788888999999986 67


Q ss_pred             ceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCC
Q 045137          150 EELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFE  229 (312)
Q Consensus       150 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (312)
                      +.++....          .+..|+.|...+| .+..+|.+..++.|+.++++.+. +.......          .... |
T Consensus       420 ~~Lp~tva----------~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l~~----------~~p~-p  476 (1081)
T KOG0618|consen  420 TTLPDTVA----------NLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNN-LSEVTLPE----------ALPS-P  476 (1081)
T ss_pred             hhhhHHHH----------hhhhhHHHhhcCC-ceeechhhhhcCcceEEecccch-hhhhhhhh----------hCCC-c
Confidence            77774443          7889999988888 78888988899999999997665 34332111          1111 8


Q ss_pred             CcCeeecccccc
Q 045137          230 NLKSLDLSYLPE  241 (312)
Q Consensus       230 ~L~~L~l~~~~~  241 (312)
                      +|++|+++|...
T Consensus       477 ~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  477 NLKYLDLSGNTR  488 (1081)
T ss_pred             ccceeeccCCcc
Confidence            999999998764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.92  E-value=3.6e-10  Score=99.17  Aligned_cols=226  Identities=20%  Similarity=0.106  Sum_probs=139.4

Q ss_pred             cccCCCCC-----ccccHHhhCCCCCcEEecCCCCCccc-------cCchhhhccccccEEEEecccccccccCCCCccc
Q 045137            2 LDISHTTI-----RELPEELKLLVNLKCLNLRWTGALIR-------IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVL   69 (312)
Q Consensus         2 L~Ls~~~i-----~~lp~~i~~L~~L~~L~L~~~~~~~~-------lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~   69 (312)
                      |+++++.+     ..+++.+...++|++|+++++ .+..       ++. .+..+++|+.|++++|.+..          
T Consensus        28 l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~----------   95 (319)
T cd00116          28 LRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGP----------   95 (319)
T ss_pred             EeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHH-HHHhcCceeEEEccCCCCCh----------
Confidence            67888887     346677888899999999998 5542       223 36778899999999988752          


Q ss_pred             cCCccchhhhccCC---CCceEEEEEecChh--hHH----HHhhc-ccccccceEEEEeecCCCc--cccchhhhcCccc
Q 045137           70 FGGGEVLIQELLGL---KYLEVLELTLGSYH--ALQ----ILLSS-NKLKSCIRSLYLYLTGDKK--SIIDATAFTDLNH  137 (312)
Q Consensus        70 ~~~~~~~~~~l~~L---~~L~~l~l~~~~~~--~~~----~l~~l-~~l~~~L~~L~l~~~~~~~--~~~~~~~l~~l~~  137 (312)
                           .....+..+   ++|+.++++.+...  ...    .+..+ +    +|+.|++.++....  ...+...+..+++
T Consensus        96 -----~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  166 (319)
T cd00116          96 -----DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP----ALEKLVLGRNRLEGASCEALAKALRANRD  166 (319)
T ss_pred             -----hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC----CceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence                 122222223   45999999866543  111    23333 3    88999999875432  1223345666778


Q ss_pred             cceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc-----CC-ccCCCCCCceEEEeeccccceecc
Q 045137          138 LNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-----ST-FLAFAPNLKSLSLFKCRAMEEIIS  211 (312)
Q Consensus       138 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~-~l~~l~~L~~L~l~~~~~~~~~~~  211 (312)
                      |++|+++++ .+..-......     .....+++|++|++++| .+.+     +. .+..+++|++|++++|......+.
T Consensus       167 L~~L~l~~n-~l~~~~~~~l~-----~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         167 LKELNLANN-GIGDAGIRALA-----EGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             cCEEECcCC-CCchHHHHHHH-----HHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            999999976 34321111110     00004569999999998 5543     22 456789999999999864321110


Q ss_pred             cCccccCCCCCCCCccCCCcCeeeccccccccc-----cccCCcCCCCccEEEecCC
Q 045137          212 VGKIAENPEMMGHISPFENLKSLDLSYLPELKS-----IFWKPLPFTHLKEMGVRAC  263 (312)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~i~~c  263 (312)
                       ....      ......+.|++|.+.+|. ++.     +......+++|+.++++++
T Consensus       240 -~l~~------~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         240 -ALAS------ALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             -HHHH------HHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC
Confidence             0000      001134789999999873 431     2122344688999999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=7.1e-10  Score=96.59  Aligned_cols=188  Identities=15%  Similarity=0.086  Sum_probs=126.3

Q ss_pred             hCCCCCcEEecCCCCCccccCc-hhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137           17 KLLVNLKCLNLRWTGALIRIPR-GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS   95 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~   95 (312)
                      +++++|+...|+++ .+...+. ++...|++++.|+++.|-+..+-             .....++.|++|+.|+++-+.
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-------------~v~~i~eqLp~Le~LNls~Nr  183 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-------------PVLKIAEQLPSLENLNLSSNR  183 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHH-------------HHHHHHHhcccchhccccccc
Confidence            56888999999988 6666553 45788999999999998776532             555667788889888888665


Q ss_pred             hhhHHH---HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCccccc
Q 045137           96 YHALQI---LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSL  172 (312)
Q Consensus        96 ~~~~~~---l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L  172 (312)
                      ...+.+   -..++    +++.|.+..|.- ....+...+..+|+|+.|++..+..... ......         .+..|
T Consensus       184 l~~~~~s~~~~~l~----~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~---------i~~~L  248 (505)
T KOG3207|consen  184 LSNFISSNTTLLLS----HLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANEIILI-KATSTK---------ILQTL  248 (505)
T ss_pred             ccCCccccchhhhh----hhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhcccccce-ecchhh---------hhhHH
Confidence            433221   11233    788999998844 4566656777889999999987642211 111122         67889


Q ss_pred             ceEeecCCCCccc--CCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccc
Q 045137          173 HLVTIYSCHKLKD--STFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYL  239 (312)
Q Consensus       173 ~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (312)
                      +.|+|+++..+..  ++..+.+|.|+.|.+..|..-....+..      +.......||+|++|.+...
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~------~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV------ESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCc------cchhhhcccccceeeecccC
Confidence            9999999844432  3467789999999988875433221110      11123467899999988774

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.80  E-value=1.6e-09  Score=90.36  Aligned_cols=121  Identities=20%  Similarity=0.225  Sum_probs=88.3

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ||||+|.|+.+.++++-+++++.|++++| .+..+..  +..+++|++|++++|.+..                ..+.=.
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~----------------~~Gwh~  349 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAE----------------CVGWHL  349 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHh----------------hhhhHh
Confidence            68899999999888899999999999998 7777766  8888999999999887642                112223


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      +|-|+++|.+..+....+..+.++.    +|..|++.+.+... ......++++|.|+.+.+.++
T Consensus       350 KLGNIKtL~La~N~iE~LSGL~KLY----SLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKIETLSGLRKLY----SLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             hhcCEeeeehhhhhHhhhhhhHhhh----hheeccccccchhh-HHHhcccccccHHHHHhhcCC
Confidence            5667778888777777777777776    67777777653322 222367777888877777764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.5e-10  Score=94.03  Aligned_cols=202  Identities=18%  Similarity=0.078  Sum_probs=125.1

Q ss_pred             CCCcEEecCCCCCcccc-CchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhh
Q 045137           20 VNLKCLNLRWTGALIRI-PRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA   98 (312)
Q Consensus        20 ~~L~~L~L~~~~~~~~l-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~   98 (312)
                      .+|++|||++. .++.- --+++..|.+|+.|.+.++.+.               ......+.+-.+|+.++++.+....
T Consensus       185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~Ld---------------D~I~~~iAkN~~L~~lnlsm~sG~t  248 (419)
T KOG2120|consen  185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLD---------------DPIVNTIAKNSNLVRLNLSMCSGFT  248 (419)
T ss_pred             hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccC---------------cHHHHHHhccccceeeccccccccc
Confidence            36899999988 55532 1234688899999999988773               3555667777888889988554322


Q ss_pred             HHHHhhcccccccceEEEEeecCCCccccchhhhc-CccccceEEeccCcCcceeeeeccccccccCCCCcccccceEee
Q 045137           99 LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFT-DLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTI  177 (312)
Q Consensus        99 ~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l  177 (312)
                      -....-+-..+..|..|+++.|...... +.-.+. --++|..|++++|..  .+.......   +..  .+|+|.+||+
T Consensus       249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rr--nl~~sh~~t---L~~--rcp~l~~LDL  320 (419)
T KOG2120|consen  249 ENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRR--NLQKSHLST---LVR--RCPNLVHLDL  320 (419)
T ss_pred             hhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHh--hhhhhHHHH---HHH--hCCceeeecc
Confidence            2222222122227888888888543322 211111 124788889988632  122111110   000  6899999999


Q ss_pred             cCCCCccc--CCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCc
Q 045137          178 YSCHKLKD--STFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHL  255 (312)
Q Consensus       178 ~~~~~l~~--l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L  255 (312)
                      ++|-.+++  +-.+.+++.|++|+++.|..+.-           +.....+..|.|.+|++.+|-.=+.+......+++|
T Consensus       321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p-----------~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~l  389 (419)
T KOG2120|consen  321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIP-----------ETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHL  389 (419)
T ss_pred             ccccccCchHHHHHHhcchheeeehhhhcCCCh-----------HHeeeeccCcceEEEEeccccCchHHHHHHHhCccc
Confidence            99866766  23677899999999999976432           222356778999999998876433333323345554


Q ss_pred             c
Q 045137          256 K  256 (312)
Q Consensus       256 ~  256 (312)
                      +
T Consensus       390 k  390 (419)
T KOG2120|consen  390 K  390 (419)
T ss_pred             c
Confidence            3

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=3.4e-09  Score=68.91  Aligned_cols=55  Identities=31%  Similarity=0.485  Sum_probs=43.7

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG   57 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~   57 (312)
                      |++++|.++.+| ..|..+++|++|++++| .+..++++++.++++|++|++++|.+
T Consensus         6 L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    6 LDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             EEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred             EECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            677888888887 67788888888888888 77888777788888888888887753

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.76  E-value=4.1e-10  Score=97.55  Aligned_cols=139  Identities=15%  Similarity=0.162  Sum_probs=61.3

Q ss_pred             ceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC--cc
Q 045137          112 IRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FL  189 (312)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l  189 (312)
                      +.++++..|...++......-.....|+.|..++|.+..+..+..+..        +.++|+.|.+..|+++++..  .+
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~--------~~~~L~~l~l~~c~~fsd~~ft~l  341 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ--------HCHNLQVLELSGCQQFSDRGFTML  341 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc--------CCCceEEEeccccchhhhhhhhhh
Confidence            334444444444444433333344455555555555444333333322        45566666666665554432  22


Q ss_pred             CC-CCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccc-----cCCcCCCCccEEEecCC
Q 045137          190 AF-APNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIF-----WKPLPFTHLKEMGVRAC  263 (312)
Q Consensus       190 ~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----~~~~~~~~L~~L~i~~c  263 (312)
                      +. .+.|+.+++.+|....+.          .+..-...++.|+.+.++.|...++-.     ........|+.+.+.+|
T Consensus       342 ~rn~~~Le~l~~e~~~~~~d~----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~  411 (483)
T KOG4341|consen  342 GRNCPHLERLDLEECGLITDG----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC  411 (483)
T ss_pred             hcCChhhhhhcccccceehhh----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence            22 455555555555443332          111122344555555555444433331     11223444555555555


Q ss_pred             CCCCC
Q 045137          264 DQLRK  268 (312)
Q Consensus       264 ~~L~~  268 (312)
                      |.+.+
T Consensus       412 p~i~d  416 (483)
T KOG4341|consen  412 PLITD  416 (483)
T ss_pred             CCchH
Confidence            54443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.74  E-value=4.8e-10  Score=96.47  Aligned_cols=50  Identities=22%  Similarity=0.290  Sum_probs=40.0

Q ss_pred             CCCccccHHhhCCC-CCcEEecCCCCCccccCchhhhccccccEEEEeccccccc
Q 045137            7 TTIRELPEELKLLV-NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF   60 (312)
Q Consensus         7 ~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~   60 (312)
                      ..++++|.   +|+ .-..++|..| .|+.||+++|+.+++|+.|++++|.+..+
T Consensus        56 ~GL~eVP~---~LP~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I  106 (498)
T KOG4237|consen   56 KGLTEVPA---NLPPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFI  106 (498)
T ss_pred             CCcccCcc---cCCCcceEEEeccC-CcccCChhhccchhhhceecccccchhhc
Confidence            34555553   333 4566789999 99999999999999999999999998764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.72  E-value=8.3e-09  Score=81.53  Aligned_cols=75  Identities=23%  Similarity=0.348  Sum_probs=15.2

Q ss_pred             cCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhh-ccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            4 ISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLIS-KFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         4 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      |+.+.|...| .+.+..+++.|+|++| .|..+..  ++ .+.+|+.|++++|.+.                 .+.++..
T Consensus         4 lt~~~i~~~~-~~~n~~~~~~L~L~~n-~I~~Ie~--L~~~l~~L~~L~Ls~N~I~-----------------~l~~l~~   62 (175)
T PF14580_consen    4 LTANMIEQIA-QYNNPVKLRELNLRGN-QISTIEN--LGATLDKLEVLDLSNNQIT-----------------KLEGLPG   62 (175)
T ss_dssp             ----------------------------------S----TT-TT--EEE-TTS--S-------------------TT---
T ss_pred             cccccccccc-cccccccccccccccc-ccccccc--hhhhhcCCCEEECCCCCCc-----------------cccCccC
Confidence            4445555554 3455567888888888 7777754  55 5778888888888773                 3556677


Q ss_pred             CCCceEEEEEecChhhH
Q 045137           83 LKYLEVLELTLGSYHAL   99 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~   99 (312)
                      +.+|+.|+++.+....+
T Consensus        63 L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen   63 LPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             -TT--EEE--SS---S-
T ss_pred             hhhhhhcccCCCCCCcc
Confidence            77777777776665444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.72  E-value=2.3e-09  Score=84.70  Aligned_cols=125  Identities=19%  Similarity=0.136  Sum_probs=42.9

Q ss_pred             CcccCCCCCccccHHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELPEELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.|+.+. .++ .+.+|+.|++++| .+..++.  +..+++|++|++++|.+..+                ...
T Consensus        23 ~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I~~i----------------~~~   82 (175)
T PF14580_consen   23 ELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRISSI----------------SEG   82 (175)
T ss_dssp             --------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-----------------CHH
T ss_pred             ccccccccccccc-chhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCCCcc----------------ccc
Confidence            4789999999884 676 6899999999999 8999875  89999999999999988531                122


Q ss_pred             c-cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCcccc-chhhhcCccccceEEeccC
Q 045137           80 L-LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSII-DATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        80 l-~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~  146 (312)
                      + ..+++|+.|+++.+....+.++..+..+. +|+.|++.+.+-..... -...+..+|+|+.|+-...
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~-~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLP-KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-T-T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCC-CcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            3 35778888888766554433333322211 56666666543221111 1134555666666655443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.8e-10  Score=94.62  Aligned_cols=183  Identities=16%  Similarity=0.088  Sum_probs=127.4

Q ss_pred             ccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCC
Q 045137           45 SRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGD  122 (312)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~  122 (312)
                      ..||++|++...++.              ......+..+.+|+.+++......  ....+.+-.    +|+.|+++.|.+
T Consensus       185 sRlq~lDLS~s~it~--------------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~----~L~~lnlsm~sG  246 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITV--------------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS----NLVRLNLSMCSG  246 (419)
T ss_pred             hhhHHhhcchhheeH--------------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccc----cceeeccccccc
Confidence            469999999887752              234445566667776666544332  233455555    899999999988


Q ss_pred             CccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc---CC-ccCCCCCCceE
Q 045137          123 KKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD---ST-FLAFAPNLKSL  198 (312)
Q Consensus       123 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---l~-~l~~l~~L~~L  198 (312)
                      .+.......+.++..|.+|++++|......--....       + --++|+.|++++|.+.-.   +. ....+|+|..|
T Consensus       247 ~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~-------h-ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  247 FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA-------H-ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh-------h-hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            887777678888999999999998544332111111       1 458999999999844322   22 23458999999


Q ss_pred             EEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccc-cCCcCCCCccEEEecCCC
Q 045137          199 SLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIF-WKPLPFTHLKEMGVRACD  264 (312)
Q Consensus       199 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~i~~c~  264 (312)
                      ++++|-.+.+...           .....|+.|++|.++.|..+-.-. ......|.|..|++.+|-
T Consensus       319 DLSD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  319 DLSDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccccccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            9999877665311           134578999999999997654322 346789999999998874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.68  E-value=2.9e-09  Score=95.74  Aligned_cols=162  Identities=22%  Similarity=0.231  Sum_probs=105.3

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      .|+.|.+..+|..+++|..|++|||+.| .+..+|.+ +..|+ |+.|.+++|++.                ..+..++.
T Consensus       104 iLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~-lC~lp-Lkvli~sNNkl~----------------~lp~~ig~  164 (722)
T KOG0532|consen  104 ILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDG-LCDLP-LKVLIVSNNKLT----------------SLPEEIGL  164 (722)
T ss_pred             HHHhccceecchhhhhhhHHHHhhhccc-hhhcCChh-hhcCc-ceeEEEecCccc----------------cCCccccc
Confidence            3455556666666666666666666666 56666665 55555 666666666655                33445556


Q ss_pred             CCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           83 LKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      +.+|..++.+.+....++ .+..+.    .++.|.+..   .....++..+..+ .|..|+++ |+.+..+++.+.    
T Consensus       165 ~~tl~~ld~s~nei~slpsql~~l~----slr~l~vrR---n~l~~lp~El~~L-pLi~lDfS-cNkis~iPv~fr----  231 (722)
T KOG0532|consen  165 LPTLAHLDVSKNEIQSLPSQLGYLT----SLRDLNVRR---NHLEDLPEELCSL-PLIRLDFS-CNKISYLPVDFR----  231 (722)
T ss_pred             chhHHHhhhhhhhhhhchHHhhhHH----HHHHHHHhh---hhhhhCCHHHhCC-ceeeeecc-cCceeecchhhh----
Confidence            667777777777665544 455555    455554443   2334444555554 47889997 668888888877    


Q ss_pred             ccCCCCcccccceEeecCCCCcccCC----ccCCCCCCceEEEeec
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDST----FLAFAPNLKSLSLFKC  203 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~----~l~~l~~L~~L~l~~~  203 (312)
                            .+..|++|.|.+| -++..|    ..|...-.|+|++..|
T Consensus       232 ------~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  232 ------KMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ------hhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence                  7899999999888 455544    4566777888888887

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.5e-08  Score=88.49  Aligned_cols=175  Identities=15%  Similarity=0.065  Sum_probs=115.1

Q ss_pred             ccCCCCCcccc--HHhhCCCCCcEEecCCCCCccccC--chhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137            3 DISHTTIRELP--EELKLLVNLKCLNLRWTGALIRIP--RGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         3 ~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      .|..+.|...+  +....+++++.|||++| -+...-  .++...+++|+.|+++.|.+...              ..-.
T Consensus       127 sLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~--------------~~s~  191 (505)
T KOG3207|consen  127 SLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNF--------------ISSN  191 (505)
T ss_pred             eecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCC--------------cccc
Confidence            45666777776  46778999999999999 665432  24568899999999999987531              1111


Q ss_pred             hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      .-..+.+|+.|.++.++.. ..+........+++..|++...........  .-.-+..|++|++++++.+..-......
T Consensus       192 ~~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~~~~~~  268 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQGYKVG  268 (505)
T ss_pred             chhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccccccccccc
Confidence            1225677888888866553 333333333333788888887643332222  2334567899999986443322112222


Q ss_pred             cccccCCCCcccccceEeecCCCCcccCC--cc------CCCCCCceEEEeeccc
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FL------AFAPNLKSLSLFKCRA  205 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l------~~l~~L~~L~l~~~~~  205 (312)
                               .+++|..|.++.| .+.++.  ..      ..+|+|++|.+..++.
T Consensus       269 ---------~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  269 ---------TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ---------cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence                     7899999999998 777753  33      3489999999998875

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.50  E-value=6.9e-08  Score=87.45  Aligned_cols=169  Identities=22%  Similarity=0.245  Sum_probs=90.2

Q ss_pred             cccCCCCCccccHHhhCCC-CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELPEELKLLV-NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |++.++.++++|...+.+. +|+.|++++| .+..+|.. ++.+++|+.|++++|.+..++                ...
T Consensus       121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~----------------~~~  182 (394)
T COG4886         121 LDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLSDLP----------------KLL  182 (394)
T ss_pred             EecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCchhhhhh----------------hhh
Confidence            4555666666666666664 6666666666 66666533 666666666666666654322                111


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ..+.+|+.++++.+....++......   ..|+.+.+.+..   .......+..+.++..+.+.+. .+... .....  
T Consensus       183 ~~~~~L~~L~ls~N~i~~l~~~~~~~---~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~~n-~~~~~-~~~~~--  252 (394)
T COG4886         183 SNLSNLNNLDLSGNKISDLPPEIELL---SALEELDLSNNS---IIELLSSLSNLKNLSGLELSNN-KLEDL-PESIG--  252 (394)
T ss_pred             hhhhhhhheeccCCccccCchhhhhh---hhhhhhhhcCCc---ceecchhhhhcccccccccCCc-eeeec-cchhc--
Confidence            14455556666655554444332111   035555555432   1122234444555555554332 22221 12221  


Q ss_pred             cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecccc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAM  206 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~  206 (312)
                             .+++++.|++++| .+.+++.++.+.+++.|+++++...
T Consensus       253 -------~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         253 -------NLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             -------cccccceeccccc-cccccccccccCccCEEeccCcccc
Confidence                   5666777777777 6666666777777777777766543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.49  E-value=8.7e-09  Score=89.46  Aligned_cols=145  Identities=14%  Similarity=0.199  Sum_probs=108.7

Q ss_pred             cceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccC--C-
Q 045137          111 CIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS--T-  187 (312)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~-  187 (312)
                      .++.+..+++...++..+.......++|+.|-+.+|..+.+.+.....-        +++.|+.+++.+|....+-  . 
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r--------n~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR--------NCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc--------CChhhhhhcccccceehhhhHhh
Confidence            6788888888776666664555567899999999998888777665542        7899999999999665552  3 


Q ss_pred             ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCC
Q 045137          188 FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQL  266 (312)
Q Consensus       188 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L  266 (312)
                      .-.++|.|+.|.++.|..+++. +..      .......+...|+.+++.+|+.+++-..+ ...++.||.+++.+|...
T Consensus       367 ls~~C~~lr~lslshce~itD~-gi~------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDE-GIR------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             hccCCchhccCChhhhhhhhhh-hhh------hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence            3445899999999999887775 211      11124456778999999999988887655 456889999999999877


Q ss_pred             CCCC
Q 045137          267 RKLP  270 (312)
Q Consensus       267 ~~l~  270 (312)
                      ..=+
T Consensus       440 tk~~  443 (483)
T KOG4341|consen  440 TKEA  443 (483)
T ss_pred             hhhh
Confidence            6533

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=2.6e-07  Score=59.95  Aligned_cols=60  Identities=23%  Similarity=0.279  Sum_probs=51.1

Q ss_pred             CCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137           20 VNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS   95 (312)
Q Consensus        20 ~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~   95 (312)
                      ++|++|++++| .+..+|++++.++++|++|++++|.+..               .....+..+++|+.++++.+.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~---------------i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTS---------------IPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESE---------------EETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCc---------------cCHHHHcCCCCCCEEeCcCCc
Confidence            57999999999 9999999889999999999999999865               334567888889988886543

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.35  E-value=6.2e-07  Score=81.21  Aligned_cols=188  Identities=26%  Similarity=0.244  Sum_probs=130.2

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccc-cccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFS-RLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      ++++.+.+..-+..+..+..++.|++.++ .+.++++. ...+. +|+.|++++|.+..                .+..+
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N~i~~----------------l~~~~  159 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDNKIES----------------LPSPL  159 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCc-ccccCccc-cccchhhcccccccccchhh----------------hhhhh
Confidence            34555555444466777889999999999 89999885 67774 99999999998753                22567


Q ss_pred             cCCCCceEEEEEecChhhHHHHh-hcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILL-SSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI  159 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~-~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  159 (312)
                      ..+++|+.|++..+....++... ..+    .++.|++++..   ...++..+..+..|++|.+.+....+.+.  ... 
T Consensus       160 ~~l~~L~~L~l~~N~l~~l~~~~~~~~----~L~~L~ls~N~---i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~-  229 (394)
T COG4886         160 RNLPNLKNLDLSFNDLSDLPKLLSNLS----NLNNLDLSGNK---ISDLPPEIELLSALEELDLSNNSIIELLS--SLS-  229 (394)
T ss_pred             hccccccccccCCchhhhhhhhhhhhh----hhhheeccCCc---cccCchhhhhhhhhhhhhhcCCcceecch--hhh-
Confidence            88889999999988887777655 556    78888888652   22222233455568899998753222221  111 


Q ss_pred             ccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccc
Q 045137          160 VRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY  238 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (312)
                              .+.++..+.+.++ .+..++ .++.++++++|+++++.. .++.             ..+.+.+++.+++++
T Consensus       230 --------~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i-~~i~-------------~~~~~~~l~~L~~s~  286 (394)
T COG4886         230 --------NLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQI-SSIS-------------SLGSLTNLRELDLSG  286 (394)
T ss_pred             --------hcccccccccCCc-eeeeccchhccccccceeccccccc-cccc-------------cccccCccCEEeccC
Confidence                    6777888887776 555544 778889999999988754 3331             245677888888877


Q ss_pred             cc
Q 045137          239 LP  240 (312)
Q Consensus       239 ~~  240 (312)
                      ..
T Consensus       287 n~  288 (394)
T COG4886         287 NS  288 (394)
T ss_pred             cc
Confidence            43

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.28  E-value=2.5e-08  Score=89.91  Aligned_cols=165  Identities=21%  Similarity=0.175  Sum_probs=125.4

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      .||+.|...++|.++..+..|..+.|+.| .++.+|.. +.++..|.+|+++.|.+.-+|.                .+.
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~----------------~lC  141 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDLSSNQLSHLPD----------------GLC  141 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhhccchhhcCCh----------------hhh
Confidence            57899999999999999999999999999 89999986 9999999999999998875443                222


Q ss_pred             CCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           82 GLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      .|. |+.+-++.+....++ ++....    .+..|+.+.+..   ...++.++.+..|+.|.+... .+..++.+.    
T Consensus       142 ~lp-Lkvli~sNNkl~~lp~~ig~~~----tl~~ld~s~nei---~slpsql~~l~slr~l~vrRn-~l~~lp~El----  208 (722)
T KOG0532|consen  142 DLP-LKVLIVSNNKLTSLPEEIGLLP----TLAHLDVSKNEI---QSLPSQLGYLTSLRDLNVRRN-HLEDLPEEL----  208 (722)
T ss_pred             cCc-ceeEEEecCccccCCcccccch----hHHHhhhhhhhh---hhchHHhhhHHHHHHHHHhhh-hhhhCCHHH----
Confidence            222 677777777665554 333333    667777776633   334467888888998888865 555555433    


Q ss_pred             cccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~  205 (312)
                             ..-.|..||++.| ++..+| .+-+|..|++|-|++|+.
T Consensus       209 -------~~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  209 -------CSLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             -------hCCceeeeecccC-ceeecchhhhhhhhheeeeeccCCC
Confidence                   2345788898887 899999 788999999999998874

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.13  E-value=1.7e-06  Score=51.73  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=26.0

Q ss_pred             CCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc
Q 045137           20 VNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF   60 (312)
Q Consensus        20 ~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~   60 (312)
                      ++|++|++++| .+.++|+. +++|++|++|++++|.+..+
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence            46777777777 67777765 77777777777777776543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=3e-06  Score=50.68  Aligned_cols=37  Identities=41%  Similarity=0.529  Sum_probs=32.2

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPR   38 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~   38 (312)
                      +|++++|+|+++|..+++|++|++|++++| .+.+++.
T Consensus         5 ~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    5 ELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             EEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred             EEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence            478999999999988999999999999999 7777654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.05  E-value=7.3e-07  Score=81.22  Aligned_cols=53  Identities=26%  Similarity=0.439  Sum_probs=25.0

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG   57 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~   57 (312)
                      |++.+|.|..+...+..+++|++|++++| .|+.+..  +..++.|+.|++.+|.+
T Consensus       100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i  152 (414)
T KOG0531|consen  100 LDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLI  152 (414)
T ss_pred             eeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccCcc
Confidence            34444444444322444555555555555 4444443  44444455555555444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.01  E-value=1.2e-06  Score=73.56  Aligned_cols=102  Identities=20%  Similarity=0.136  Sum_probs=65.5

Q ss_pred             hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecCh
Q 045137           17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY   96 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~   96 (312)
                      .-.+.|+.+||++| .|+.+..+ +.-+|.++.|+++.|.+.                 .+.++..|.+|..|+++.+..
T Consensus       281 dTWq~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N~i~-----------------~v~nLa~L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  281 DTWQELTELDLSGN-LITQIDES-VKLAPKLRRLILSQNRIR-----------------TVQNLAELPQLQLLDLSGNLL  341 (490)
T ss_pred             chHhhhhhcccccc-chhhhhhh-hhhccceeEEecccccee-----------------eehhhhhcccceEeecccchh
Confidence            33477888888888 78877776 677788888888888773                 355677788888888887766


Q ss_pred             hhHHHH-hhcccccccceEEEEeecCCCccccchhhhcCccccceEEecc
Q 045137           97 HALQIL-LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDN  145 (312)
Q Consensus        97 ~~~~~l-~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  145 (312)
                      .....+ .++.    +++.|.+....   .... +.++.+-+|..|++++
T Consensus       342 s~~~Gwh~KLG----NIKtL~La~N~---iE~L-SGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  342 AECVGWHLKLG----NIKTLKLAQNK---IETL-SGLRKLYSLVNLDLSS  383 (490)
T ss_pred             HhhhhhHhhhc----CEeeeehhhhh---Hhhh-hhhHhhhhheeccccc
Confidence            555544 2333    66676665421   1111 3344444555555554

>PLN03150 hypothetical protein; Provisional

Probab=97.96  E-value=1.3e-05  Score=76.69  Aligned_cols=77  Identities=23%  Similarity=0.319  Sum_probs=55.8

Q ss_pred             cccCCCCCc-cccHHhhCCCCCcEEecCCCCCcc-ccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            2 LDISHTTIR-ELPEELKLLVNLKCLNLRWTGALI-RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         2 L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |+|++|.+. .+|..++.|++|++|+|++| .+. .+|.. ++.+++|+.|++++|.+..               ..+..
T Consensus       423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~lsg---------------~iP~~  485 (623)
T PLN03150        423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSFNG---------------SIPES  485 (623)
T ss_pred             EECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCCCC---------------CCchH
Confidence            567777775 67788888888888888888 444 56765 7888888888888887743               44556


Q ss_pred             ccCCCCceEEEEEecC
Q 045137           80 LLGLKYLEVLELTLGS   95 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~   95 (312)
                      +..+.+|+.|+++.+.
T Consensus       486 l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        486 LGQLTSLRILNLNGNS  501 (623)
T ss_pred             HhcCCCCCEEECcCCc
Confidence            6677777777776553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.94  E-value=8.4e-07  Score=80.85  Aligned_cols=119  Identities=21%  Similarity=0.192  Sum_probs=86.0

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      +++.|.|.++-..+..+++|..|++.+| .+..+... +..|++|++|++++|.+                 ..+..+..
T Consensus        78 ~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N~I-----------------~~i~~l~~  138 (414)
T KOG0531|consen   78 NLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFNKI-----------------TKLEGLST  138 (414)
T ss_pred             ccchhhhhhhhcccccccceeeeecccc-chhhcccc-hhhhhcchheecccccc-----------------ccccchhh
Confidence            4556666664455788999999999999 88888764 78899999999999988                 44566777


Q ss_pred             CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      +..|+.|++..+.+..+..+..+.    .++.++++++........ . +..+..++.+.+.++
T Consensus       139 l~~L~~L~l~~N~i~~~~~~~~l~----~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  139 LTLLKELNLSGNLISDISGLESLK----SLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGN  196 (414)
T ss_pred             ccchhhheeccCcchhccCCccch----hhhcccCCcchhhhhhhh-h-hhhccchHHHhccCC
Confidence            777888888888887777666666    677777776532221110 1 456667777777754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.92  E-value=2.2e-06  Score=73.24  Aligned_cols=202  Identities=15%  Similarity=0.052  Sum_probs=117.6

Q ss_pred             hCCCCCcEEecCCCCCcc-ccCc---hhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEE
Q 045137           17 KLLVNLKCLNLRWTGALI-RIPR---GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELT   92 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~-~lp~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~   92 (312)
                      -..++|++||||+|. ++ .-++   ..+..+..|++|++.+|.+....-+.  +.-+............-.+|+++.+.
T Consensus        89 ~~~~~L~~ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~--l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR--LGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             hcCCceeEeeccccc-cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH--HHHHHHHHHHHhccCCCcceEEEEee
Confidence            345699999999994 33 2222   24677899999999999885321100  00000000122334445678888887


Q ss_pred             ecChhh-----H-HHHhhcccccccceEEEEeecCCC--ccccchhhhcCccccceEEeccCcCcceeeeeccccccccC
Q 045137           93 LGSYHA-----L-QILLSSNKLKSCIRSLYLYLTGDK--KSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRR  164 (312)
Q Consensus        93 ~~~~~~-----~-~~l~~l~~l~~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~  164 (312)
                      .|+...     . ..+...+    .|+.+.+......  ........+..+++|+.|++.++. ++.-+.....  ... 
T Consensus       166 rNrlen~ga~~~A~~~~~~~----~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~La--kaL-  237 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHP----TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALA--KAL-  237 (382)
T ss_pred             ccccccccHHHHHHHHHhcc----ccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHH--HHh-
Confidence            664421     1 1233333    6777777754221  122333678888999999999753 2211111110  001 


Q ss_pred             CCCcccccceEeecCCCCcccCC-------ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecc
Q 045137          165 EPFVFHSLHLVTIYSCHKLKDST-------FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLS  237 (312)
Q Consensus       165 ~~~~~~~L~~L~l~~~~~l~~l~-------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  237 (312)
                       + .+++|+.|++++| .+.+-.       .-...|.|+.|.+.+|..-.+...        .+..+...-|.|+.|.+.
T Consensus       238 -~-s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~la~~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  238 -S-SWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--------ALAACMAEKPDLEKLNLN  306 (382)
T ss_pred             -c-ccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--------HHHHHHhcchhhHHhcCC
Confidence             1 6789999999999 776521       223479999999998876544321        111133447899999998


Q ss_pred             ccc
Q 045137          238 YLP  240 (312)
Q Consensus       238 ~~~  240 (312)
                      ++.
T Consensus       307 gN~  309 (382)
T KOG1909|consen  307 GNR  309 (382)
T ss_pred             ccc
Confidence            863

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.79  E-value=1.3e-06  Score=81.27  Aligned_cols=120  Identities=18%  Similarity=0.230  Sum_probs=76.7

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      +.++|.+..+.+++.-++.|+.|||++| .+..+..  +..|++|++||++.|.+..+|.               -....
T Consensus       170 ~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~~--Lr~l~~LkhLDlsyN~L~~vp~---------------l~~~g  231 (1096)
T KOG1859|consen  170 SFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVDN--LRRLPKLKHLDLSYNCLRHVPQ---------------LSMVG  231 (1096)
T ss_pred             hcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhHH--HHhcccccccccccchhccccc---------------cchhh
Confidence            4567777777777777888888888888 5655542  7778888888888777654321               11111


Q ss_pred             CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      . .|..|.++.|....+.++.+++    +|+.|++++.-....... .-+..+..|+.|++.++
T Consensus       232 c-~L~~L~lrnN~l~tL~gie~Lk----sL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  232 C-KLQLLNLRNNALTTLRGIENLK----SLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             h-hheeeeecccHHHhhhhHHhhh----hhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCC
Confidence            2 2677777777777777777777    777777776422222222 44455556666676663

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.71  E-value=1.5e-05  Score=76.40  Aligned_cols=107  Identities=16%  Similarity=0.041  Sum_probs=54.8

Q ss_pred             CCCcEEecCCCCCccccCchhh-hccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhh
Q 045137           20 VNLKCLNLRWTGALIRIPRGLI-SKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA   98 (312)
Q Consensus        20 ~~L~~L~L~~~~~~~~lp~~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~   98 (312)
                      .+|++|++++...+..-.+..+ ..+|+|+.|.+.+-.+.              .........++++|..|||+......
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--------------~~dF~~lc~sFpNL~sLDIS~TnI~n  187 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--------------NDDFSQLCASFPNLRSLDISGTNISN  187 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--------------chhHHHHhhccCccceeecCCCCccC
Confidence            4666666665533322211112 33566666666654442              11233444556666666666555555


Q ss_pred             HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEecc
Q 045137           99 LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDN  145 (312)
Q Consensus        99 ~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  145 (312)
                      +.++.+++    +|+.|.+.+.+-.....+ ..+..+++|+.|+++.
T Consensus       188 l~GIS~Lk----nLq~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  188 LSGISRLK----NLQVLSMRNLEFESYQDL-IDLFNLKKLRVLDISR  229 (699)
T ss_pred             cHHHhccc----cHHHHhccCCCCCchhhH-HHHhcccCCCeeeccc
Confidence            55555555    566665555543333333 4555566666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=3.6e-05  Score=61.14  Aligned_cols=54  Identities=24%  Similarity=0.292  Sum_probs=25.3

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF   58 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~   58 (312)
                      ||++|.+..++ .+-.+++|.+|.+++| .|..|.+..-..+++|+.|.+.+|++.
T Consensus        48 DLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   48 DLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchh
Confidence            44444444432 2334555555555555 444444442233444555555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=1e-05  Score=67.95  Aligned_cols=41  Identities=17%  Similarity=0.175  Sum_probs=24.9

Q ss_pred             cccccceEeecCCCCccc---CCccCCCCCCceEEEeecccccee
Q 045137          168 VFHSLHLVTIYSCHKLKD---STFLAFAPNLKSLSLFKCRAMEEI  209 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~---l~~l~~l~~L~~L~l~~~~~~~~~  209 (312)
                      .+|.+..|.++.+ ++.+   +..+..+|+|.-|++.+++.++..
T Consensus       222 ~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  222 PFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             CCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            4555556666655 4444   235666777777777776655443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.60  E-value=9.3e-06  Score=69.44  Aligned_cols=233  Identities=17%  Similarity=0.060  Sum_probs=144.6

Q ss_pred             CcccCCCCCc-----cccHHhhCCCCCcEEecCCCCCccc----cCc------hhhhccccccEEEEecccccccccCCC
Q 045137            1 LLDISHTTIR-----ELPEELKLLVNLKCLNLRWTGALIR----IPR------GLISKFSRLRVLRMLGTGGFIFYEAPE   65 (312)
Q Consensus         1 ~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lp~------~~i~~l~~L~~L~l~~~~~~~~~~~~~   65 (312)
                      +++||||.+.     .+.+.+.+.++|+..++++- ..+.    +|+      .++..+++|++|++++|=+..-.    
T Consensus        34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g----  108 (382)
T KOG1909|consen   34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG----  108 (382)
T ss_pred             EEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc----
Confidence            4789999984     36677888999999999876 4332    343      23556789999999998774211    


Q ss_pred             CccccCCccchhhhccCCCCceEEEEEecChhhH---------HHH--hhcccccccceEEEEeecCCC--ccccchhhh
Q 045137           66 DSVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL---------QIL--LSSNKLKSCIRSLYLYLTGDK--KSIIDATAF  132 (312)
Q Consensus        66 ~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~---------~~l--~~l~~l~~~L~~L~l~~~~~~--~~~~~~~~l  132 (312)
                             ....-.-+.+...|+.|.++.++....         .++  .+.......||.+.....+-.  ....+...+
T Consensus       109 -------~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  109 -------IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             -------hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence                   112223456677788888876654211         111  112222236777766654322  222333567


Q ss_pred             cCccccceEEeccCcCcceeee----eccccccccCCCCcccccceEeecCCCCccc-----CC-ccCCCCCCceEEEee
Q 045137          133 TDLNHLNELWIDNGIELEELKI----DYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-----ST-FLAFAPNLKSLSLFK  202 (312)
Q Consensus       133 ~~l~~L~~L~l~~~~~l~~l~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~-~l~~l~~L~~L~l~~  202 (312)
                      +..+.|+.+.+..+ .+..-+.    ..+.         .+++|+.|+|.+| ..+.     +. .+..+|+|+.|++.+
T Consensus       182 ~~~~~leevr~~qN-~I~~eG~~al~eal~---------~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQN-GIRPEGVTALAEALE---------HCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             HhccccceEEEecc-cccCchhHHHHHHHH---------hCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccc
Confidence            77789999988754 3332222    1222         8999999999998 4433     11 566689999999999


Q ss_pred             ccccceecccCccccCCCCCCCCccCCCcCeeeccccccccc-----cccCCcCCCCccEEEecCCC
Q 045137          203 CRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKS-----IFWKPLPFTHLKEMGVRACD  264 (312)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~i~~c~  264 (312)
                      |..-..-  ...     ...+-....|.|+.|.+.++. ++.     +.......|.|+.|.+++|.
T Consensus       251 cll~~~G--a~a-----~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  251 CLLENEG--AIA-----FVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ccccccc--HHH-----HHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            9643321  000     001123458999999998863 322     11224458999999999874

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.60  E-value=5.3e-06  Score=76.95  Aligned_cols=123  Identities=17%  Similarity=0.004  Sum_probs=73.2

Q ss_pred             CCCCCcEEecCCCCCccccC-chhhhccccccEEEEecc-cccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137           18 LLVNLKCLNLRWTGALIRIP-RGLISKFSRLRVLRMLGT-GGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS   95 (312)
Q Consensus        18 ~L~~L~~L~L~~~~~~~~lp-~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~   95 (312)
                      ..++|+.|.+.++..+.... ..+...+++|+.|++.++ ......           ..........+++|+.+++....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------~~~~~~~~~~~~~L~~l~l~~~~  254 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-----------PLLLLLLLSICRKLKSLDLSGCG  254 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-----------hhHhhhhhhhcCCcCccchhhhh
Confidence            46888888888887666532 123677888999988873 221100           10112233445667777766444


Q ss_pred             hhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcce
Q 045137           96 YHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE  151 (312)
Q Consensus        96 ~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~  151 (312)
                      ......+..+...+.+|+.|.+..|...++..+......+++|++|+++.|..+.+
T Consensus       255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d  310 (482)
T KOG1947|consen  255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD  310 (482)
T ss_pred             ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence            22222333333323478888877776666666656667777888888888766533

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.49  E-value=0.00032  Score=62.64  Aligned_cols=36  Identities=8%  Similarity=0.050  Sum_probs=24.9

Q ss_pred             hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc
Q 045137           17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG   57 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~   57 (312)
                      ..+.++++|++++| .+..+|.  +  ..+|+.|.+.+|..
T Consensus        49 ~~~~~l~~L~Is~c-~L~sLP~--L--P~sLtsL~Lsnc~n   84 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESLPV--L--PNELTEITIENCNN   84 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcccCC--C--CCCCcEEEccCCCC
Confidence            44678888888888 7777773  2  23588888877544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.49  E-value=8.8e-06  Score=75.96  Aligned_cols=99  Identities=22%  Similarity=0.277  Sum_probs=74.5

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      .||||+|++.+.- .+..+++|++|||++| .++.+|.--...+. |+.|.+++|-.                 ..+.++
T Consensus       191 ~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l-----------------~tL~gi  250 (1096)
T KOG1859|consen  191 SLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNAL-----------------TTLRGI  250 (1096)
T ss_pred             hhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHH-----------------HhhhhH
Confidence            3799999999884 8999999999999999 89988863245555 99999999976                 557788


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeec
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLT  120 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~  120 (312)
                      .+|++|+.|+++.|-...+.++.-+..+. .|+.|.+.+.
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGN  289 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGN  289 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCC
Confidence            88999999999877655444444333222 4566665543

>PLN03150 hypothetical protein; Provisional

Probab=97.47  E-value=0.00018  Score=68.98  Aligned_cols=57  Identities=25%  Similarity=0.466  Sum_probs=50.0

Q ss_pred             CcccCCCCCc-cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137            1 LLDISHTTIR-ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF   58 (312)
Q Consensus         1 ~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~   58 (312)
                      +|+|++|.+. .+|..++.+++|++|+|++|.....+|.. +++|++|++|++++|.+.
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCCccc
Confidence            3789999997 89999999999999999999444467776 999999999999999875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.44  E-value=7.7e-05  Score=71.67  Aligned_cols=124  Identities=23%  Similarity=0.188  Sum_probs=63.4

Q ss_pred             CcccCCCCCc--cccHHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137            1 LLDISHTTIR--ELPEELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI   77 (312)
Q Consensus         1 ~L~Ls~~~i~--~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (312)
                      +||++|...-  .=|..++ -||.|+.|.+++-.....=-.....+++||..||++++++                 ..+
T Consensus       126 ~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-----------------~nl  188 (699)
T KOG3665|consen  126 HLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-----------------SNL  188 (699)
T ss_pred             hcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-----------------cCc
Confidence            3566665432  1234444 4677777777765221111112245667777777777766                 334


Q ss_pred             hhccCCCCceEEEEEe---cChhhHHHHhhcccccccceEEEEeecCCCccccch----hhhcCccccceEEecc
Q 045137           78 QELLGLKYLEVLELTL---GSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDA----TAFTDLNHLNELWIDN  145 (312)
Q Consensus        78 ~~l~~L~~L~~l~l~~---~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~----~~l~~l~~L~~L~l~~  145 (312)
                      .+++.|++|++|.+..   .....+..+.+++    +|+.|+++.........+.    +.-..+|+|+.|+.++
T Consensus       189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~----~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK----KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHHhccccHHHHhccCCCCCchhhHHHHhccc----CCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            5566666666655542   2223444556666    6777777754322222111    1222356666666664

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.41  E-value=0.00092  Score=59.79  Aligned_cols=48  Identities=25%  Similarity=0.284  Sum_probs=26.5

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT   55 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~   55 (312)
                      |+++++.+..+|.   --.+|+.|++++|..+..+|.. +  .++|++|++.+|
T Consensus        57 L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C  104 (426)
T PRK15386         57 LYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC  104 (426)
T ss_pred             EEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence            5566666666651   1224666666666555555543 2  245666666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.00018  Score=60.62  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=11.9

Q ss_pred             CCccCCCcCeeeccccccccc
Q 045137          224 HISPFENLKSLDLSYLPELKS  244 (312)
Q Consensus       224 ~~~~~~~L~~L~l~~~~~l~~  244 (312)
                      ....|+.|..|.+.+.|-...
T Consensus       244 ~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  244 ALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             HHcCCchhheeeccCCccccc
Confidence            345566666666666554333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.18  E-value=0.00087  Score=53.43  Aligned_cols=125  Identities=18%  Similarity=0.077  Sum_probs=74.7

Q ss_pred             cccCCCCCccccHHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELPEELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      ++|++.++..+.. .+ -+.....+||++| .+..++.  +..+++|.+|.+.+|.+..+               ...--
T Consensus        24 ~~LR~lkip~ien-lg~~~d~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nNrIt~I---------------~p~L~   84 (233)
T KOG1644|consen   24 LDLRGLKIPVIEN-LGATLDQFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNNRITRI---------------DPDLD   84 (233)
T ss_pred             cccccccccchhh-ccccccccceeccccc-chhhccc--CCCccccceEEecCCcceee---------------ccchh
Confidence            4555555543321 22 3467788999999 7887776  88899999999999988652               22223


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccc-cchhhhcCccccceEEeccC
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSI-IDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~  146 (312)
                      ..+++|..|.+..+....+.++..+..+. .|+.|.+-+....... +-.-.+..+|+|+.|++..-
T Consensus        85 ~~~p~l~~L~LtnNsi~~l~dl~pLa~~p-~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   85 TFLPNLKTLILTNNSIQELGDLDPLASCP-KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhccccceEEecCcchhhhhhcchhccCC-ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            34566777777766655544444333222 5666666554322111 11134566777777777653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.15  E-value=9e-05  Score=68.72  Aligned_cols=118  Identities=21%  Similarity=0.070  Sum_probs=71.3

Q ss_pred             HHhhCCCCCcEEecCC-CCCccccC---chhhhccccccEEEEeccc-ccccccCCCCccccCCccchhhhccC-CCCce
Q 045137           14 EELKLLVNLKCLNLRW-TGALIRIP---RGLISKFSRLRVLRMLGTG-GFIFYEAPEDSVLFGGGEVLIQELLG-LKYLE   87 (312)
Q Consensus        14 ~~i~~L~~L~~L~L~~-~~~~~~lp---~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~   87 (312)
                      ......++|+.|++++ +..+...+   ......+++|+.|++..+. +..               ..+..+.. +++|+
T Consensus       208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd---------------~~l~~l~~~c~~L~  272 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD---------------IGLSALASRCPNLE  272 (482)
T ss_pred             HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc---------------hhHHHHHhhCCCcc
Confidence            4556789999999987 32322222   2235667899999999887 332               33444333 56777


Q ss_pred             EEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           88 VLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        88 ~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      .+.+..........+......+..|++|++++|....+..+......+++|+.|.+..+
T Consensus       273 ~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  273 TLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             eEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            77754333223334444433344799999999877655544444555666666655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.00025  Score=59.29  Aligned_cols=76  Identities=16%  Similarity=0.114  Sum_probs=60.0

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      |+.=|+.++++ +-..+++-|++|.|+-| .|+.+.+  +..|++|+.|++..|.+.              ....+..|.
T Consensus        24 LNcwg~~L~DI-sic~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN~I~--------------sldEL~YLk   85 (388)
T KOG2123|consen   24 LNCWGCGLDDI-SICEKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKNCIE--------------SLDELEYLK   85 (388)
T ss_pred             hcccCCCccHH-HHHHhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhcccc--------------cHHHHHHHh
Confidence            45556677777 45678999999999999 8888877  899999999999998886              336677788


Q ss_pred             CCCCceEEEEEecC
Q 045137           82 GLKYLEVLELTLGS   95 (312)
Q Consensus        82 ~L~~L~~l~l~~~~   95 (312)
                      +|++|+.|.+.-+.
T Consensus        86 nlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   86 NLPSLRTLWLDENP   99 (388)
T ss_pred             cCchhhhHhhccCC
Confidence            88888888776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.00013  Score=60.84  Aligned_cols=85  Identities=24%  Similarity=0.306  Sum_probs=52.8

Q ss_pred             cccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCC
Q 045137           44 FSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDK  123 (312)
Q Consensus        44 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~  123 (312)
                      +.+.+.|++.+|.+                 ..+..+..+..|++|.++.+.+.++..+....    .|+.|++... .+
T Consensus        18 l~~vkKLNcwg~~L-----------------~DIsic~kMp~lEVLsLSvNkIssL~pl~rCt----rLkElYLRkN-~I   75 (388)
T KOG2123|consen   18 LENVKKLNCWGCGL-----------------DDISICEKMPLLEVLSLSVNKISSLAPLQRCT----RLKELYLRKN-CI   75 (388)
T ss_pred             HHHhhhhcccCCCc-----------------cHHHHHHhcccceeEEeeccccccchhHHHHH----HHHHHHHHhc-cc
Confidence            45566666666655                 44556667777777777777776666666655    5666655543 22


Q ss_pred             ccccchhhhcCccccceEEeccCcCcc
Q 045137          124 KSIIDATAFTDLNHLNELWIDNGIELE  150 (312)
Q Consensus       124 ~~~~~~~~l~~l~~L~~L~l~~~~~l~  150 (312)
                      .+......+.++++|+.|.+..+....
T Consensus        76 ~sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   76 ESLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             ccHHHHHHHhcCchhhhHhhccCCccc
Confidence            333333667777777777777654433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00015  Score=57.59  Aligned_cols=87  Identities=18%  Similarity=0.324  Sum_probs=48.9

Q ss_pred             cceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc--CCccCC-CCCCceEEEeeccccceecccCc
Q 045137          138 LNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD--STFLAF-APNLKSLSLFKCRAMEEIISVGK  214 (312)
Q Consensus       138 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~l~~-l~~L~~L~l~~~~~~~~~~~~~~  214 (312)
                      ++.++-+++ .+...+.+.+.         .++.++.|.+.+|..+.+  +..+++ .|+|+.|+|++|+.+++- +   
T Consensus       103 IeaVDAsds-~I~~eGle~L~---------~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-G---  168 (221)
T KOG3864|consen  103 IEAVDASDS-SIMYEGLEHLR---------DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-G---  168 (221)
T ss_pred             EEEEecCCc-hHHHHHHHHHh---------ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-H---
Confidence            444444443 34444444444         566666667777766655  223333 567777777777666653 1   


Q ss_pred             cccCCCCCCCCccCCCcCeeecccccccccc
Q 045137          215 IAENPEMMGHISPFENLKSLDLSYLPELKSI  245 (312)
Q Consensus       215 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  245 (312)
                             -.++..|++|+.|.+.+++.....
T Consensus       169 -------L~~L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  169 -------LACLLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             -------HHHHHHhhhhHHHHhcCchhhhch
Confidence                   124556677777777666654443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.31  E-value=0.00089  Score=50.14  Aligned_cols=80  Identities=19%  Similarity=0.248  Sum_probs=57.6

Q ss_pred             CcccCCCCCccccHH---hhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137            1 LLDISHTTIRELPEE---LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI   77 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~---i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (312)
                      +++||.+.+.-++..   +....+|+..+|++| .++.+|+.+..+.+.++.|++.+|.+.++|                
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvP----------------   93 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVP----------------   93 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhch----------------
Confidence            367888877655544   456677777899999 888888886677788999999998887544                


Q ss_pred             hhccCCCCceEEEEEecChh
Q 045137           78 QELLGLKYLEVLELTLGSYH   97 (312)
Q Consensus        78 ~~l~~L~~L~~l~l~~~~~~   97 (312)
                      .++..++-|+.++++.+...
T Consensus        94 eE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   94 EELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             HHHhhhHHhhhcccccCccc
Confidence            33555666677777766553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.14  E-value=0.00094  Score=50.02  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             cccCCCCCccccHHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc
Q 045137            2 LDISHTTIRELPEELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF   60 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~   60 (312)
                      .+|++|.+.++|+.|. +++-++.||+++| .+.++|.+ +..|+.|+.|+++.|.+...
T Consensus        58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~~~  115 (177)
T KOG4579|consen   58 ISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLNAE  115 (177)
T ss_pred             EecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCccccc
Confidence            4789999999996665 6679999999999 89999998 99999999999999988643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.96  E-value=0.0025  Score=31.68  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=13.5

Q ss_pred             CCcEEecCCCCCccccCchhhhc
Q 045137           21 NLKCLNLRWTGALIRIPRGLISK   43 (312)
Q Consensus        21 ~L~~L~L~~~~~~~~lp~~~i~~   43 (312)
                      +|++||+++| .++.+|++ +++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTT-TTT
T ss_pred             CccEEECCCC-cCEeCChh-hcC
Confidence            4667777777 66666665 544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.72  E-value=0.0028  Score=52.52  Aligned_cols=37  Identities=19%  Similarity=0.287  Sum_probs=20.2

Q ss_pred             hCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccc
Q 045137           17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTG   56 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~   56 (312)
                      ..+.+|++|.+.++ .+..+-.  +..|++|+.|.++.|.
T Consensus        40 d~~~~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn~   76 (260)
T KOG2739|consen   40 DEFVELELLSVINV-GLTTLTN--FPKLPKLKKLELSDNY   76 (260)
T ss_pred             ccccchhhhhhhcc-ceeeccc--CCCcchhhhhcccCCc
Confidence            34555555555555 3333322  4556677777777663

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.59  E-value=0.0065  Score=50.42  Aligned_cols=64  Identities=23%  Similarity=0.106  Sum_probs=44.1

Q ss_pred             hhCCCCCcEEecCCC--CCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEe
Q 045137           16 LKLLVNLKCLNLRWT--GALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTL   93 (312)
Q Consensus        16 i~~L~~L~~L~L~~~--~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~   93 (312)
                      +=.|++|++|.++.|  +....++.- ..++++|++|++++|++..              ...+..+..+++|..|++..
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~--------------lstl~pl~~l~nL~~Ldl~n  125 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD--------------LSTLRPLKELENLKSLDLFN  125 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc--------------ccccchhhhhcchhhhhccc
Confidence            446889999999999  434445553 5667999999999998852              24445555556666666553


Q ss_pred             c
Q 045137           94 G   94 (312)
Q Consensus        94 ~   94 (312)
                      +
T Consensus       126 ~  126 (260)
T KOG2739|consen  126 C  126 (260)
T ss_pred             C
Confidence            3

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.22  E-value=0.0035  Score=31.16  Aligned_cols=19  Identities=26%  Similarity=0.527  Sum_probs=15.7

Q ss_pred             CcccCCCCCccccHHhhCC
Q 045137            1 LLDISHTTIRELPEELKLL   19 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L   19 (312)
                      +|||++|.++.+|.+|++|
T Consensus         4 ~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    4 YLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             EEEETSSEESEEGTTTTT-
T ss_pred             EEECCCCcCEeCChhhcCC
Confidence            5899999999999877764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.06  E-value=0.02  Score=29.58  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=18.2

Q ss_pred             CCCCcEEecCCCCCccccCchhhh
Q 045137           19 LVNLKCLNLRWTGALIRIPRGLIS   42 (312)
Q Consensus        19 L~~L~~L~L~~~~~~~~lp~~~i~   42 (312)
                      |++|++|+|++| .+..+|++++.
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHcc
Confidence            567888999988 88888887553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.06  E-value=0.02  Score=29.58  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=18.2

Q ss_pred             CCCCcEEecCCCCCccccCchhhh
Q 045137           19 LVNLKCLNLRWTGALIRIPRGLIS   42 (312)
Q Consensus        19 L~~L~~L~L~~~~~~~~lp~~~i~   42 (312)
                      |++|++|+|++| .+..+|++++.
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHcc
Confidence            567888999988 88888887553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.05  E-value=0.0063  Score=48.65  Aligned_cols=35  Identities=11%  Similarity=0.185  Sum_probs=19.1

Q ss_pred             cccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecC
Q 045137          136 NHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYS  179 (312)
Q Consensus       136 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  179 (312)
                      ++|+.|+|++|..+++-++..+.         .+++|+.|.+.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~---------~lknLr~L~l~~  185 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLL---------KLKNLRRLHLYD  185 (221)
T ss_pred             cchheeeccCCCeechhHHHHHH---------HhhhhHHHHhcC
Confidence            45566666666555555544443         455555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.70  E-value=0.021  Score=26.31  Aligned_cols=16  Identities=38%  Similarity=0.623  Sum_probs=7.5

Q ss_pred             CCcEEecCCCCCccccC
Q 045137           21 NLKCLNLRWTGALIRIP   37 (312)
Q Consensus        21 ~L~~L~L~~~~~~~~lp   37 (312)
                      +|+.|++++| .+..+|
T Consensus         2 ~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCC-CCCCCc
Confidence            5666666666 455544

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.09  E-value=0.035  Score=46.66  Aligned_cols=55  Identities=24%  Similarity=0.220  Sum_probs=27.4

Q ss_pred             cccCCCCCc-----cccHHhhCCCCCcEEecCCCCCccc----cCc------hhhhccccccEEEEecccc
Q 045137            2 LDISHTTIR-----ELPEELKLLVNLKCLNLRWTGALIR----IPR------GLISKFSRLRVLRMLGTGG   57 (312)
Q Consensus         2 L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lp~------~~i~~l~~L~~L~l~~~~~   57 (312)
                      ++||||.|.     .+..-|.+-++|+..+++.- +.+.    ++.      .++.+|++|+..+++.|-+
T Consensus        35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             EeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            467777663     23344455556666665544 2221    111      1244556666666665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.87  E-value=0.22  Score=42.07  Aligned_cols=180  Identities=14%  Similarity=0.017  Sum_probs=96.2

Q ss_pred             HhhCCCCCcEEecCCCCCccccCc---hhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEE
Q 045137           15 ELKLLVNLKCLNLRWTGALIRIPR---GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLEL   91 (312)
Q Consensus        15 ~i~~L~~L~~L~L~~~~~~~~lp~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l   91 (312)
                      .+-++++|+..+|+.|..-...|+   ..|+.-.+|.||.+.+|.+..+.-+  ++.-+............-+.|++..+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~--rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGG--RIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchh--HHHHHHHHHHHHhhhccCCCceEEEe
Confidence            356789999999999954334444   2457778999999999987532100  00000000011122333456777777


Q ss_pred             EecChhhHH--HHh-hcccccccceEEEEeecCCCccccc----hhhhcCccccceEEeccCcCcceeeeeccccccccC
Q 045137           92 TLGSYHALQ--ILL-SSNKLKSCIRSLYLYLTGDKKSIID----ATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRR  164 (312)
Q Consensus        92 ~~~~~~~~~--~l~-~l~~l~~~L~~L~l~~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~  164 (312)
                      ..++....+  .+. .+... .+|+.+.+.... +....+    ...+..+.+|+.|++.++. .+-.+.....  ...+
T Consensus       165 grNRlengs~~~~a~~l~sh-~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La--~al~  239 (388)
T COG5238         165 GRNRLENGSKELSAALLESH-ENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLA--DALC  239 (388)
T ss_pred             ccchhccCcHHHHHHHHHhh-cCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHH--HHhc
Confidence            655443211  111 11111 267777777642 222211    1345556788899998752 2221111111  0010


Q ss_pred             CCCcccccceEeecCCCCcccC--C----ccC--CCCCCceEEEeeccc
Q 045137          165 EPFVFHSLHLVTIYSCHKLKDS--T----FLA--FAPNLKSLSLFKCRA  205 (312)
Q Consensus       165 ~~~~~~~L~~L~l~~~~~l~~l--~----~l~--~l~~L~~L~l~~~~~  205 (312)
                         .++.|+.|.+.+| .++.-  .    .+.  ..|+|..|...++..
T Consensus       240 ---~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         240 ---EWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             ---ccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence               5677999999999 55441  1    111  268888888776643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.13  E-value=0.28  Score=36.40  Aligned_cols=40  Identities=13%  Similarity=0.208  Sum_probs=20.7

Q ss_pred             HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137           14 EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT   55 (312)
Q Consensus        14 ~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~   55 (312)
                      ..|....+|+.+.+..  .+..++..++..+++|+.+.+.++
T Consensus         6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~   45 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN   45 (129)
T ss_dssp             TTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST
T ss_pred             HHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc
Confidence            3456666777777763  456676666777777777777653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.18  E-value=2.7  Score=30.91  Aligned_cols=31  Identities=16%  Similarity=0.173  Sum_probs=12.5

Q ss_pred             cccccceEeecCCCCcccCC--ccCCCCCCceEEE
Q 045137          168 VFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSL  200 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l  200 (312)
                      .+.+|+.+.+.+.  +..++  .+.++++|+.+.+
T Consensus        33 ~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen   33 NCTSLKSINFPNN--LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             T-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEE
T ss_pred             ccccccccccccc--ccccceeeeecccccccccc
Confidence            4445555555442  33333  3444555555555

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.86  E-value=0.33  Score=24.98  Aligned_cols=17  Identities=18%  Similarity=0.610  Sum_probs=12.6

Q ss_pred             CCCccEEEecCCCCCCC
Q 045137          252 FTHLKEMGVRACDQLRK  268 (312)
Q Consensus       252 ~~~L~~L~i~~c~~L~~  268 (312)
                      +++|+.|++++|+++++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46778888888877765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.60  E-value=0.066  Score=44.03  Aligned_cols=55  Identities=20%  Similarity=0.125  Sum_probs=39.0

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF   58 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~   58 (312)
                      ||+|.|.|..+|+.++.+..++.++++.| .....|.+ +++.+++++++..++.+.
T Consensus        70 l~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   70 LDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccccCCcchhhhccCcch
Confidence            56666777777777777777777777777 66777776 777777777777766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 46/259 (17%), Positives = 84/259 (32%), Gaps = 54/259 (20%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           LD++ T + ELP  L  L  LK L L        + +   S F  L  L + G       
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKR--- 338

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSL-YLYLT 120
                       E+    L  L+ L  L+L   S+  ++     N     +  L  L L+
Sbjct: 339 -----------LELGTGCLENLENLRELDL---SHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 121 GDKKSIIDATAFTDLNHLNELWI-DNGIE-------------LEELKIDYTEIVRKRREP 166
            ++   +   AF +   L  L +    ++             L+ L + ++ +       
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--DISSE 442

Query: 167 FVFHSL-HLVTIY------SCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENP 219
            +F  L  L  +           ++ +  L     L+ L L  C  +  I          
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ-------- 493

Query: 220 EMMGHISPFENLKSLDLSY 238
                 +  + +  +DLS+
Sbjct: 494 ---HAFTSLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 47/316 (14%), Positives = 86/316 (27%), Gaps = 83/316 (26%)

Query: 2   LDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60
           L+ S   +  +       L+NL  L+L     +  I         RL  L +  T   + 
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVL--TANPL- 93

Query: 61  YEAPEDSVLFGGGEVLIQELL-GLKYLEVLEL-----------TLGSYHALQIL-LSSNK 107
                          + +  L G K L+ L              L +   L+ L L SN 
Sbjct: 94  -------------IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 108 LKSCIRSL--------YLYLTGDKKSIIDATAFTDLNHLNELWID--------------N 145
           + S              L    +    +     + L     L ++              +
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 146 GIELEELKIDYTEIVRKRREPFVFHSL-HLVTI-YSCHKLKDSTFLAFAP----NLKSLS 199
               + L    T+ +    +     ++  L    +     +D +   F      +++S++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 200 LFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMG 259
           L                           F  L+ LDL+    L  +   P     L    
Sbjct: 261 L----------QKHYFFNISS--NTFHCFSGLQELDLTAT-HLSEL---PSGLVGLS--- 301

Query: 260 VRACDQLRKLPLDSNS 275
                 L+KL L +N 
Sbjct: 302 -----TLKKLVLSANK 312

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 44/266 (16%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           L+++   I  +          + LN   T  L+ I +GL  K S ++ L +         
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL--KNSTIQSLWLGTFEDMDDE 241

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLEL---TLGSYHALQIL-LSSNKLKS---CIRS 114
           +       F G   +  E + L+      +   T   +  LQ L L++  L      +  
Sbjct: 242 DISPAV--FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG 299

Query: 115 L----YLYLTGDKKSIIDATAFTDLNHLNELWI-DNGIE-------------LEELKIDY 156
           L     L L+ +K   +   + ++   L  L I  N                L EL + +
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 157 TEIVRKRREPFVFHSL-HLVTIY-SCHKLKDSTFLAFA--PNLKSLSLFKCRAMEEIISV 212
            +I           +L HL ++  S ++       AF   P L+ L L   R     +  
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-----LK- 413

Query: 213 GKIAENPEMMGHISPFENLKSLDLSY 238
                  +          LK L+LS+
Sbjct: 414 -----VKDAQSPFQNLHLLKVLNLSH 434

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 47/282 (16%), Positives = 86/282 (30%), Gaps = 50/282 (17%)

Query: 2   LDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60
           L +S   IR +       L  L+ L L      + I +        LR+L +   G    
Sbjct: 29  LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL---GSSKI 85

Query: 61  YEAPEDSVLFGGGEVLIQELLGLKYLEVLEL-------------TLGSYHALQIL-LSSN 106
           Y    D+              GL +L  L L                +  AL  L LS N
Sbjct: 86  YFLHPDA------------FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 107 KLKS--------CIRSL-YLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT 157
           +++S         + SL  +  + ++  ++       L      +      L    +   
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS----LAANSLYSR 189

Query: 158 EIVRKRREPFVFHSLHLVTIY-SCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVG--- 213
             V   +    F ++ L  +  S +         F+  +     F       I+  G   
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 214 -KIAENPEMMGHISPFENLKSLDLSY--LPELKSIFWKPLPF 252
             I +  +         +++ LDLS+  +  L S  ++ L  
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 44/268 (16%), Positives = 78/268 (29%), Gaps = 68/268 (25%)

Query: 2   LDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRM-------L 53
           LD+S   +R L          L+ L+L     +  I  G     S L  L +       L
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 54  GTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLEL-----------TLGSYHALQIL 102
             G F                       GL  L+ L              +G    L+ L
Sbjct: 92  ALGAF----------------------SGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 103 -LSSNKLKSCIRSL---------YLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEEL 152
            ++ N ++S              +L L+ +K   I  T    L+ +  L          L
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------NLSL 182

Query: 153 KIDYTEIVRKRREPFVFHSLHLVTIY-SCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIIS 211
            +    +     +P  F  + L  +    +    +        L  L + +   + E  +
Sbjct: 183 DLSLNPM--NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL-VLGEFRN 239

Query: 212 VGKIAENPEMMGHISPFENLKSLDLSYL 239
            G + +  +     S  E L +L +   
Sbjct: 240 EGNLEKFDK-----SALEGLCNLTIEEF 262

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 32/153 (20%), Positives = 48/153 (31%), Gaps = 38/153 (24%)

Query: 2   LDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60
           L + +  I  +P      + +L  L+L     L  I  G    F  L  L+ L       
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA---FEGLFNLKYL------- 201

Query: 61  YEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKS----CIRSL- 115
                   L       +  L  L  LE LE+            S N            L 
Sbjct: 202 -------NLGMCNIKDMPNLTPLVGLEELEM------------SGNHFPEIRPGSFHGLS 242

Query: 116 ---YLYLTGDKKSIIDATAFTDLNHLNELWIDN 145
               L++   + S+I+  AF  L  L EL + +
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 26/169 (15%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61
           + I    + ELP+ ++    L+ L L     L  +P   I+  +RLR L +         
Sbjct: 109 MTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELSIRACPELT-- 164

Query: 62  EAPEDSVLFGGGEVLIQELLGLKYLEVLEL----------TLGSYHALQIL-LSSNKLKS 110
           E PE             E  GL  L+ L L          ++ +   L+ L + ++ L +
Sbjct: 165 ELPEP----LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA 220

Query: 111 ------CIRSL-YLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEEL 152
                  +  L  L L G          F     L  L + +   L  L
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 38/153 (24%)

Query: 2   LDISHTTIRELPEEL-KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60
           L + +  I  +P      + +L+ L+L     L  I  G     S LR L          
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN--------- 191

Query: 61  YEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKS----CIRSL- 115
                   L       I  L  L  L+ L+L            S N L +      + L 
Sbjct: 192 --------LAMCNLREIPNLTPLIKLDELDL------------SGNHLSAIRPGSFQGLM 231

Query: 116 ---YLYLTGDKKSIIDATAFTDLNHLNELWIDN 145
               L++   +  +I+  AF +L  L E+ + +
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 41/260 (15%), Positives = 73/260 (28%), Gaps = 35/260 (13%)

Query: 2   LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTG--GFI 59
           LD+S   I  + ++    + L  L LR       I +  +   + L V R++        
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 60  FYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL----LSSNKLKS----- 110
             E  E S+   G   +  +   L Y       +  +H L  +    L+   +K      
Sbjct: 246 NLEIFEPSI-MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304

Query: 111 -CIRSLYLYLTGDKKSIIDATAFTDLNHL----NELWIDNGI----ELEELKIDYTEIVR 161
              +   L +   +           L  L    N+  I         L  L +    +  
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364

Query: 162 KRREPFVF---HSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAEN 218
                +     +SL  + +     +  S        L+ L                +   
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST----------LKRV 414

Query: 219 PEMMGHISPFENLKSLDLSY 238
            E        E L  LD+SY
Sbjct: 415 TE-FSAFLSLEKLLYLDISY 433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 37/279 (13%), Positives = 73/279 (26%), Gaps = 49/279 (17%)

Query: 2   LDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60
           +D+S   ++ L          L+ L+L     +  I          L  L + G      
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP---I 92

Query: 61  YEAPEDSVLFGGGEVLIQELLGLKYLEVLEL-----------TLGSYHALQIL-LSSNKL 108
                 S              GL  LE L              +G    L+ L ++ N +
Sbjct: 93  QSFSPGS------------FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

Query: 109 KSCI--------RSL-YLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI 159
            SC          +L ++ L+ +    I       L    ++          L +    I
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV-------NLSLDMSLNPI 193

Query: 160 VRKRREPFVFHSLHLVTIY-SCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAEN 218
                +   F  + L  +    +    +       NL  L + +   + E      +   
Sbjct: 194 --DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL-ILGEFKDERNLEIF 250

Query: 219 PEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKE 257
              +        +    L+Y  +      K     ++  
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 2   LDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60
           L++    +  +       L +L+ L L     L  IP   +S    L VLR+        
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRL---RHLNI 188

Query: 61  YEAPEDSVLFGG-GEVLIQELLGLKYLEVLELTLGSYHALQIL-LSSNKLKS-------C 111
               + S  F     + + E+    YL+ +         L  L ++   L +        
Sbjct: 189 NAIRDYS--FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 112 IRSL-YLYLTGDKKSIIDATAFTDLNHLNELWIDN 145
           +  L +L L+ +  S I+ +   +L  L E+ +  
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 44/289 (15%), Positives = 85/289 (29%), Gaps = 37/289 (12%)

Query: 2   LDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60
           LD+S   I  +    L+   NL+ L L+    +  I          L  L +        
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLDLSDNH---L 86

Query: 61  YEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLT 120
                                 L  L+ L L    Y  L +      L + +++L +   
Sbjct: 87  SSLSSSW------------FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN-LQTLRIG-N 132

Query: 121 GDKKSIIDATAFTDLNHLNELWID-NGIE------------LEELKIDYTEIVRKRREPF 167
            +  S I    F  L  LNEL I    +             +  L +  +E         
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192

Query: 168 -VFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHIS 226
            +  S+  + +     L    F     +  S  + K      +++     E  +++ +I 
Sbjct: 193 DILSSVRYLEL-RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 227 PFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNS 275
               ++  D +         + P     + E+G      +R+L +    
Sbjct: 252 ELSEVEFDDCTL---NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 45/168 (26%)

Query: 116 YLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLH-L 174
            L L       I + AF++L +++ +++   + L++L            E   F++L  +
Sbjct: 35  TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL------------ESHSFYNLSKV 82

Query: 175 VTIYSCHKLKDSTFL------AFA--PNLKSLSLFKCRAMEEIISVGKIAENPEMMGHIS 226
             I     ++++  L      A    P LK L +F             +   P+ +  + 
Sbjct: 83  THIE----IRNTRNLTYIDPDALKELPLLKFLGIFNTG----------LKMFPD-LTKVY 127

Query: 227 PFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSN 274
             +    L+++  P + SI      F  L       C++   L L +N
Sbjct: 128 STDIFFILEITDNPYMTSI--PVNAFQGL-------CNETLTLKLYNN 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.8
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.8
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.71
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.71
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.69
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.66
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.63
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.59
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.55
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.53
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.52
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.51
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.48
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.45
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.42
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.39
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.38
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.38
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.34
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.33
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.2
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.19
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.03
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.03
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.03
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.02
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.92
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.9
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.85
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.83
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.82
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.8
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.8
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.8
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.57
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.42
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.1
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.03
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.97
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.39
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.2
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	80.61

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=1.3e-21  Score=171.25  Aligned_cols=140  Identities=19%  Similarity=0.226  Sum_probs=97.3

Q ss_pred             hcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceec
Q 045137          132 FTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEII  210 (312)
Q Consensus       132 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~  210 (312)
                      +..+++|++|+++++ .+..++.. +.         .+++|++|++++| .+..+| .++.+++|++|++++|.....+.
T Consensus       179 ~~~l~~L~~L~L~~n-~l~~lp~~-l~---------~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWT-GIRSLPAS-IA---------NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             EEESTTCCEEEEEEE-CCCCCCGG-GG---------GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred             hccCCCCCEEECcCC-CcCcchHh-hc---------CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhH
Confidence            455778888888875 45544432 22         6788888888888 666665 67778888888888876655432


Q ss_pred             ccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhh
Q 045137          211 SVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWW  290 (312)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~  290 (312)
                                  .....+++|++|++++|.....++.....+++|+.|++++|..+..+|...... ..++.+..+.+..
T Consensus       247 ------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~  313 (328)
T 4fcg_A          247 ------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQ  313 (328)
T ss_dssp             ------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGS
T ss_pred             ------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHH
Confidence                        144567888888888887777777667778888888888888888888655555 6677777776666


Q ss_pred             hhcccc
Q 045137          291 NRLQWE  296 (312)
Q Consensus       291 ~~~~~~  296 (312)
                      ..+.+.
T Consensus       314 ~~l~~~  319 (328)
T 4fcg_A          314 AQLDQH  319 (328)
T ss_dssp             CC----
T ss_pred             HHHhhh
Confidence            555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.83  E-value=4.9e-20  Score=169.36  Aligned_cols=256  Identities=19%  Similarity=0.152  Sum_probs=166.4

Q ss_pred             CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccccc-CCCCcc------ccC-
Q 045137            1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYE-APEDSV------LFG-   71 (312)
Q Consensus         1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~~------~~~-   71 (312)
                      +|+|++|.+..+ |..|+++++|++|+|++| .+..+|.+++.++++|++|++++|.+..++. .+....      ... 
T Consensus        60 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             EEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence            378899999877 688999999999999999 8888888778999999999999998865432 111110      000 


Q ss_pred             -CccchhhhccCCCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcC
Q 045137           72 -GGEVLIQELLGLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIE  148 (312)
Q Consensus        72 -~~~~~~~~l~~L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  148 (312)
                       ........+..+.+|+.|+++.+....+  ..+..++    +|+.|++.++.... .. ...+..+++|++|+++++..
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~----~L~~L~l~~n~i~~-~~-~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH----GLIVLRLRHLNINA-IR-DYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT----TCCEEEEESCCCCE-EC-TTCSCSCTTCCEEEEECCTT
T ss_pred             ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC----CCcEEeCCCCcCcE-eC-hhhcccCcccceeeCCCCcc
Confidence             0112223455566666666665544322  2344455    66777776653222 11 13566667777777776655


Q ss_pred             cceeeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCc
Q 045137          149 LEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHIS  226 (312)
Q Consensus       149 l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (312)
                      ...++....          ...+|+.|++++| .+..++  .+..+++|+.|++++|... .+..           ....
T Consensus       213 ~~~~~~~~~----------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~-----------~~~~  269 (477)
T 2id5_A          213 LDTMTPNCL----------YGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEG-----------SMLH  269 (477)
T ss_dssp             CCEECTTTT----------TTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCC-EECT-----------TSCT
T ss_pred             ccccCcccc----------cCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCC-ccCh-----------hhcc
Confidence            554443333          4458888888888 677776  5778888999988887643 3211           1345


Q ss_pred             cCCCcCeeecccccccccccc-CCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHh
Q 045137          227 PFENLKSLDLSYLPELKSIFW-KPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEED  288 (312)
Q Consensus       227 ~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~  288 (312)
                      .+++|++|.++++ .+..+.. ....+++|+.|+++++ +++.++........+++.+....|
T Consensus       270 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          270 ELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             TCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             ccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence            6788999999886 4555533 3567889999999886 777777655444466666653333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=3.9e-20  Score=168.92  Aligned_cols=241  Identities=20%  Similarity=0.183  Sum_probs=158.0

Q ss_pred             cCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCC
Q 045137            4 ISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGL   83 (312)
Q Consensus         4 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L   83 (312)
                      .+++.++.+|.++.  ++|++|+|++| .+..+++..+.++++|++|++++|.+..               .....+..+
T Consensus        61 c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---------------~~~~~~~~l  122 (452)
T 3zyi_A           61 CTRRGLSEVPQGIP--SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQ---------------IEVGAFNGL  122 (452)
T ss_dssp             CCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE---------------ECTTTTTTC
T ss_pred             ECCCCcCccCCCCC--CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCC---------------cChhhccCc
Confidence            34556667775443  57788888887 6777655557788888888888777653               333456667


Q ss_pred             CCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           84 KYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        84 ~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+|+.|+++.+....++  .+..++    +|+.|+++++... .... ..+..+++|++|++++++.++.+....+.   
T Consensus       123 ~~L~~L~L~~n~l~~~~~~~~~~l~----~L~~L~L~~N~l~-~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---  193 (452)
T 3zyi_A          123 ASLNTLELFDNWLTVIPSGAFEYLS----KLRELWLRNNPIE-SIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFE---  193 (452)
T ss_dssp             TTCCEEECCSSCCSBCCTTTSSSCT----TCCEEECCSCCCC-EECT-TTTTTCTTCCEEECCCCTTCCEECTTTTT---
T ss_pred             ccCCEEECCCCcCCccChhhhcccC----CCCEEECCCCCcc-eeCH-hHHhcCCcccEEeCCCCCCccccChhhcc---
Confidence            77777777766544332  233444    6777777765432 2211 45677788888888877777766655444   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE  241 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  241 (312)
                            .+++|++|++++| .+..+|.+..+++|++|++++|...... +           .....+++|++|.++++ .
T Consensus       194 ------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~-~-----------~~~~~l~~L~~L~L~~n-~  253 (452)
T 3zyi_A          194 ------GLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIR-P-----------GSFHGLSSLKKLWVMNS-Q  253 (452)
T ss_dssp             ------TCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEEC-G-----------GGGTTCTTCCEEECTTS-C
T ss_pred             ------CCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccC-c-----------ccccCccCCCEEEeCCC-c
Confidence                  6788888888888 7777777778888888888877543322 1           13356678888888775 4


Q ss_pred             ccccccC-CcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137          242 LKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR  292 (312)
Q Consensus       242 l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~  292 (312)
                      +..+... ...+++|+.|+++++ +++.+|........+++.+....|-|.+
T Consensus       254 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          254 VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcCC
Confidence            5555433 456788888888875 7777776655555666666544444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=4.9e-20  Score=167.71  Aligned_cols=241  Identities=20%  Similarity=0.209  Sum_probs=153.5

Q ss_pred             cCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCC
Q 045137            4 ISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGL   83 (312)
Q Consensus         4 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L   83 (312)
                      .++..++.+|.++.  +++++|+|++| .+..++...+.++++|++|++++|.+..               .....+..+
T Consensus        50 c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---------------i~~~~~~~l  111 (440)
T 3zyj_A           50 CVRKNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRT---------------IEIGAFNGL  111 (440)
T ss_dssp             CCSCCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCE---------------ECGGGGTTC
T ss_pred             eCCCCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCc---------------cChhhccCC
Confidence            34556667775544  57777777777 6777665557777777777777776643               333456667


Q ss_pred             CCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           84 KYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        84 ~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+|+.|+++.+....++  .+..++    +|+.|+++++... .... ..+..+++|++|++++++.+..+....+.   
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~----~L~~L~L~~N~i~-~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---  182 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLS----KLKELWLRNNPIE-SIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFE---  182 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCS----SCCEEECCSCCCC-EECT-TTTTTCTTCCEEECCCCTTCCEECTTTTT---
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccc----cCceeeCCCCccc-ccCH-HHhhhCcccCEeCCCCCCCcceeCcchhh---
Confidence            77777777766544332  234444    6777777765322 1111 35667778888888876666666554443   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE  241 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  241 (312)
                            .+++|++|++++| .++.+|.+..+++|++|++++|.. ..+.+           .....+++|++|.++++ .
T Consensus       183 ------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~L~~n-~  242 (440)
T 3zyj_A          183 ------GLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHL-SAIRP-----------GSFQGLMHLQKLWMIQS-Q  242 (440)
T ss_dssp             ------TCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCC-CEECT-----------TTTTTCTTCCEEECTTC-C
T ss_pred             ------cccccCeecCCCC-cCccccccCCCcccCEEECCCCcc-CccCh-----------hhhccCccCCEEECCCC-c
Confidence                  6778888888887 777777777788888888877753 33211           13456677888888775 4


Q ss_pred             ccccccC-CcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137          242 LKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR  292 (312)
Q Consensus       242 l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~  292 (312)
                      ++.+... ...+++|+.|+++++ +++.+|........+++.+....|-|.+
T Consensus       243 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          243 IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCccC
Confidence            5555433 456778888888775 6777776655544666666544444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.80  E-value=2.5e-19  Score=156.73  Aligned_cols=214  Identities=20%  Similarity=0.227  Sum_probs=172.7

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|+|++|.+..+|..++++++|++|+|++| .+..+|.. ++++++|++|++++|.+..                .+..+
T Consensus        85 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~-~~~l~~L~~L~Ls~n~l~~----------------lp~~l  146 (328)
T 4fcg_A           85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDT-MQQFAGLETLTLARNPLRA----------------LPASI  146 (328)
T ss_dssp             EEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSC-GGGGTTCSEEEEESCCCCC----------------CCGGG
T ss_pred             EEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHH-HhccCCCCEEECCCCcccc----------------CcHHH
Confidence            378999999999999999999999999999 78899987 8999999999999998863                24457


Q ss_pred             cCCCCceEEEEEecCh-hhHH-HH---------hhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCc
Q 045137           81 LGLKYLEVLELTLGSY-HALQ-IL---------LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIEL  149 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~-~~~~-~l---------~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l  149 (312)
                      ..+++|+.|+++.+.. ..++ .+         ..++    +|+.|+++++...   .++..+..+++|++|+++++ .+
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~----~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~N-~l  218 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV----NLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNS-PL  218 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST----TCCEEEEEEECCC---CCCGGGGGCTTCCEEEEESS-CC
T ss_pred             hcCcCCCEEECCCCCCccccChhHhhccchhhhccCC----CCCEEECcCCCcC---cchHhhcCCCCCCEEEccCC-CC
Confidence            7889999999987532 1222 11         1244    8999999987543   34457889999999999987 55


Q ss_pred             ceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccC
Q 045137          150 EELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPF  228 (312)
Q Consensus       150 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (312)
                      ..++....          .+++|++|++++|.....+| .++.+++|++|++++|.....+.            .....+
T Consensus       219 ~~l~~~l~----------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p------------~~~~~l  276 (328)
T 4fcg_A          219 SALGPAIH----------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP------------LDIHRL  276 (328)
T ss_dssp             CCCCGGGG----------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC------------TTGGGC
T ss_pred             CcCchhhc----------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc------------hhhhcC
Confidence            55443322          78999999999996777777 78899999999999987765542            245778


Q ss_pred             CCcCeeeccccccccccccCCcCCCCccEEEecC
Q 045137          229 ENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRA  262 (312)
Q Consensus       229 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~  262 (312)
                      ++|++|++++|+.++.++.....+++|+.+.+..
T Consensus       277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            9999999999999999988888999999998764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.80  E-value=6.4e-19  Score=160.82  Aligned_cols=273  Identities=18%  Similarity=0.138  Sum_probs=149.8

Q ss_pred             CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc-ccCCCCccc------cCC
Q 045137            1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF-YEAPEDSVL------FGG   72 (312)
Q Consensus         1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~-~~~~~~~~~------~~~   72 (312)
                      +|+|++|.+..+ |..|+++++|++|++++|.....+++..+.++++|++|++++|.+..+ |..+.....      .+-
T Consensus        34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  113 (455)
T 3v47_A           34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC  113 (455)
T ss_dssp             EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence            478999999877 688999999999999999433467766689999999999999988654 222222110      000


Q ss_pred             --ccchhhh--ccCCCCceEEEEEecChhhHH--H-HhhcccccccceEEEEeecCCCccccc-hh--------------
Q 045137           73 --GEVLIQE--LLGLKYLEVLELTLGSYHALQ--I-LLSSNKLKSCIRSLYLYLTGDKKSIID-AT--------------  130 (312)
Q Consensus        73 --~~~~~~~--l~~L~~L~~l~l~~~~~~~~~--~-l~~l~~l~~~L~~L~l~~~~~~~~~~~-~~--------------  130 (312)
                        ....+..  +..+++|+.|+++.+......  . +.+++    +|+.|+++++........ ..              
T Consensus       114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~----~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR----RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT----TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC----cccEEeCCCCcccccChhhhhcccccccccccccc
Confidence              1111222  555666666666655433221  1 33444    566666654421111000 00              


Q ss_pred             -----------------hhcCccccceEEeccCcC----------------cceeeee----------------------
Q 045137          131 -----------------AFTDLNHLNELWIDNGIE----------------LEELKID----------------------  155 (312)
Q Consensus       131 -----------------~l~~l~~L~~L~l~~~~~----------------l~~l~~~----------------------  155 (312)
                                       .+..+++|++|+++++.-                ++.+...                      
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                             011224555555554411                0000000                      


Q ss_pred             --------------ccccccccC-CCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccC
Q 045137          156 --------------YTEIVRKRR-EPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAEN  218 (312)
Q Consensus       156 --------------~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  218 (312)
                                    ........+ ....+++|++|++++| .+..+ + .++.+++|++|++++|.. ..+.+       
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-------  340 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDS-------  340 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECG-------
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCcc-CCcCh-------
Confidence                          000000000 0113455555555555 34333 2 445555566665555533 22111       


Q ss_pred             CCCCCCCccCCCcCeeeccccccccccc-cCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137          219 PEMMGHISPFENLKSLDLSYLPELKSIF-WKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR  292 (312)
Q Consensus       219 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~  292 (312)
                          .....+++|++|+++++ .++.+. .....+++|+.|+++++ +++.+|........+++.+....+.|.+
T Consensus       341 ----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          341 ----RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             ----GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ----hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence                13456789999999886 466653 34667999999999985 7888887665555777777644444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.80  E-value=1e-18  Score=152.94  Aligned_cols=222  Identities=18%  Similarity=0.145  Sum_probs=160.2

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |+|++|.++.+| ..|+.+++|++|++++| .+..+++..++.+++|++|++++|.+..+|.+                +
T Consensus        57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~----------------~  119 (330)
T 1xku_A           57 LDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEK----------------M  119 (330)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS----------------C
T ss_pred             EECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChh----------------h
Confidence            678888888776 46888888888888888 77777444488888888888888877654421                1


Q ss_pred             cCCCCceEEEEEecChhh--HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           81 LGLKYLEVLELTLGSYHA--LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                        .++|+.++++.+....  ...+..++    +|+.|+++++...........+..+++|++|+++++ .+..++..   
T Consensus       120 --~~~L~~L~l~~n~l~~~~~~~~~~l~----~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~---  189 (330)
T 1xku_A          120 --PKTLQELRVHENEITKVRKSVFNGLN----QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG---  189 (330)
T ss_dssp             --CTTCCEEECCSSCCCBBCHHHHTTCT----TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS---
T ss_pred             --cccccEEECCCCcccccCHhHhcCCc----cccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc---
Confidence              1577888887664432  23455666    788888887654332233357788889999999876 45443321   


Q ss_pred             cccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeec
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDL  236 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  236 (312)
                               .+++|++|++++| .+..+ + .+..+++|++|++++|...... +           .....+++|++|++
T Consensus       190 ---------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-----------~~~~~l~~L~~L~L  247 (330)
T 1xku_A          190 ---------LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVD-N-----------GSLANTPHLRELHL  247 (330)
T ss_dssp             ---------CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEEC-T-----------TTGGGSTTCCEEEC
T ss_pred             ---------ccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeC-h-----------hhccCCCCCCEEEC
Confidence                     4589999999998 66665 3 6888999999999988643322 1           13456899999999


Q ss_pred             cccccccccccCCcCCCCccEEEecCCCCCCCCCCCCc
Q 045137          237 SYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSN  274 (312)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~  274 (312)
                      +++ .+..++.....+++|+.|+++++ +++.++....
T Consensus       248 ~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f  283 (330)
T 1xku_A          248 NNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDF  283 (330)
T ss_dssp             CSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred             CCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhc
Confidence            996 57777767778999999999985 6888776555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=3.7e-19  Score=162.42  Aligned_cols=217  Identities=16%  Similarity=0.152  Sum_probs=168.1

Q ss_pred             CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.|..+ |..|+++++|++|+|++| .+..+++..+.++++|++|++++|.+..+               ....
T Consensus        79 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~  142 (452)
T 3zyi_A           79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVI---------------PSGA  142 (452)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBC---------------CTTT
T ss_pred             EEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCcc---------------Chhh
Confidence            478999999987 488999999999999999 88888877799999999999999988653               2344


Q ss_pred             ccCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137           80 LLGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT  157 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~  157 (312)
                      +..+++|+.|+++.+....++  .+.+++    +|+.|++.++........ ..+..+++|++|+++++ .+..++  .+
T Consensus       143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~----~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~--~~  214 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIESIPSYAFNRVP----SLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC-NIKDMP--NL  214 (452)
T ss_dssp             SSSCTTCCEEECCSCCCCEECTTTTTTCT----TCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTS-CCSSCC--CC
T ss_pred             hcccCCCCEEECCCCCcceeCHhHHhcCC----cccEEeCCCCCCccccCh-hhccCCCCCCEEECCCC-cccccc--cc
Confidence            677889999999877665433  345566    899999998765554443 56888999999999976 555443  22


Q ss_pred             ccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137          158 EIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD  235 (312)
Q Consensus       158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  235 (312)
                      .         .+++|+.|++++| .+..+ + .+..+++|+.|++++|...... +           .....+++|++|+
T Consensus       215 ~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~-----------~~~~~l~~L~~L~  272 (452)
T 3zyi_A          215 T---------PLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-R-----------NAFDGLASLVELN  272 (452)
T ss_dssp             T---------TCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEEC-T-----------TTTTTCTTCCEEE
T ss_pred             c---------ccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceEC-H-----------HHhcCCCCCCEEE
Confidence            2         7899999999999 66665 4 7888999999999988643322 1           1346679999999


Q ss_pred             ccccccccccccC-CcCCCCccEEEecCCC
Q 045137          236 LSYLPELKSIFWK-PLPFTHLKEMGVRACD  264 (312)
Q Consensus       236 l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~  264 (312)
                      ++++ .++.+... ...+++|+.|++.+++
T Consensus       273 L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          273 LAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            9986 67766654 4568899999988654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=6e-19  Score=157.95  Aligned_cols=258  Identities=14%  Similarity=0.099  Sum_probs=137.9

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCC-CCcc------ccC-
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAP-EDSV------LFG-   71 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~------~~~-   71 (312)
                      +|+|++|.+..+| ..|+.+++|++|++++| .+..+++..++++++|++|++++|.+..+|.++ ....      ..+ 
T Consensus        73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A           73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence            3788889888876 58889999999999998 788887766889999999999998887655332 1110      000 


Q ss_pred             -CccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcc
Q 045137           72 -GGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELE  150 (312)
Q Consensus        72 -~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~  150 (312)
                       ........+..+++|+.|+++.+....+ .+..++    .|+.|++.+...       ..+...++|++|+++++ .+.
T Consensus       152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~----~L~~L~l~~n~l-------~~~~~~~~L~~L~l~~n-~l~  218 (390)
T 3o6n_A          152 NLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIP----SLFHANVSYNLL-------STLAIPIAVEELDASHN-SIN  218 (390)
T ss_dssp             CCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCT----TCSEEECCSSCC-------SEEECCSSCSEEECCSS-CCC
T ss_pred             ccCccChhhccCCCCCCEEECCCCcCCcc-cccccc----ccceeecccccc-------cccCCCCcceEEECCCC-eee
Confidence             0111122244444555555544332221 112222    333333332211       01111223444444332 222


Q ss_pred             eeeeecc-----------ccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCcccc
Q 045137          151 ELKIDYT-----------EIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAE  217 (312)
Q Consensus       151 ~l~~~~~-----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  217 (312)
                      .++....           .... .+....+++|++|++++| .+..+ + .++.+++|++|++++|.... +        
T Consensus       219 ~~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~--------  287 (390)
T 3o6n_A          219 VVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVA-L--------  287 (390)
T ss_dssp             EEECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCCCE-E--------
T ss_pred             eccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCcCcc-c--------
Confidence            2111000           0000 000004556666666665 44443 2 45556666666666554322 1        


Q ss_pred             CCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137          218 NPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR  292 (312)
Q Consensus       218 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~  292 (312)
                          ......+++|++|+++++ .+..++.....+++|+.|+++++ +++.++....   ..++.+....+.|.+
T Consensus       288 ----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~---~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          288 ----NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTH---HTLKNLTLSHNDWDC  353 (390)
T ss_dssp             ----ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTT---CCCSEEECCSSCEEH
T ss_pred             ----CcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeCchhh---ccCCEEEcCCCCccc
Confidence                113356788899988886 56666655667889999999886 4777764332   456666544444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=6e-19  Score=160.51  Aligned_cols=217  Identities=18%  Similarity=0.181  Sum_probs=168.2

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.+..++ ..|+++++|++|+|++| .+..++++.+.++++|++|++++|.+..+               ....
T Consensus        68 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~  131 (440)
T 3zyj_A           68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTI---------------PNGA  131 (440)
T ss_dssp             EEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSC---------------CTTT
T ss_pred             EEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCee---------------CHhH
Confidence            3789999999886 88999999999999999 89998877799999999999999988643               2345


Q ss_pred             ccCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137           80 LLGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT  157 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~  157 (312)
                      +..+++|+.|+++.+....++  .+..++    +|+.|++.++........ ..+..+++|++|+++++ .+..++  .+
T Consensus       132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~----~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~--~~  203 (440)
T 3zyj_A          132 FVYLSKLKELWLRNNPIESIPSYAFNRIP----SLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMC-NLREIP--NL  203 (440)
T ss_dssp             SCSCSSCCEEECCSCCCCEECTTTTTTCT----TCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTS-CCSSCC--CC
T ss_pred             hhccccCceeeCCCCcccccCHHHhhhCc----ccCEeCCCCCCCcceeCc-chhhcccccCeecCCCC-cCcccc--cc
Confidence            778889999999877654433  345556    899999988655544433 56888999999999987 555443  12


Q ss_pred             ccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137          158 EIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD  235 (312)
Q Consensus       158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  235 (312)
                      .         .+++|+.|++++| .+..+ + .+..+++|+.|++++|... .+.+           .....+++|++|+
T Consensus       204 ~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-----------~~~~~l~~L~~L~  261 (440)
T 3zyj_A          204 T---------PLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIER-----------NAFDNLQSLVEIN  261 (440)
T ss_dssp             T---------TCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCC-EECT-----------TSSTTCTTCCEEE
T ss_pred             C---------CCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCcee-EECh-----------hhhcCCCCCCEEE
Confidence            2         7899999999999 77775 3 7888999999999988643 3311           1345678999999


Q ss_pred             ccccccccccccC-CcCCCCccEEEecCCC
Q 045137          236 LSYLPELKSIFWK-PLPFTHLKEMGVRACD  264 (312)
Q Consensus       236 l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~  264 (312)
                      ++++ .++.+... ...+++|+.|++.+.+
T Consensus       262 L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          262 LAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            9986 67776654 4568999999987643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=1.1e-19  Score=160.71  Aligned_cols=247  Identities=17%  Similarity=0.123  Sum_probs=110.2

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |++++|.++.+| ..|+.+++|++|++++| .+..+++..+.++++|++|++++|.+..+               ....+
T Consensus        57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------~~~~~  120 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNL---------------SSSWF  120 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSC---------------CHHHH
T ss_pred             EECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcC---------------CHhHh
Confidence            445555555444 24555555555555555 44444433355555555555555544321               11224


Q ss_pred             cCCCCceEEEEEecChhhHHH---HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137           81 LGLKYLEVLELTLGSYHALQI---LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT  157 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~---l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~  157 (312)
                      ..+++|+.|+++.+....++.   +..++    +|+.|+++++........ ..+..+++|++|+++++ .+.......+
T Consensus       121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~----~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~l  194 (353)
T 2z80_A          121 KPLSSLTFLNLLGNPYKTLGETSLFSHLT----KLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDAS-DLQSYEPKSL  194 (353)
T ss_dssp             TTCTTCSEEECTTCCCSSSCSSCSCTTCT----TCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEET-TCCEECTTTT
T ss_pred             CCCccCCEEECCCCCCcccCchhhhccCC----CCcEEECCCCccccccCH-HHccCCCCCCEEECCCC-CcCccCHHHH
Confidence            445555555554443332221   22333    455555555422121111 34445555555555544 2333322222


Q ss_pred             ccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137          158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD  235 (312)
Q Consensus       158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  235 (312)
                      .         .+++|++|++++| .+..++  .++.+++|++|++++|.........         .......+.++.+.
T Consensus       195 ~---------~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------l~~~~~~~~l~~l~  255 (353)
T 2z80_A          195 K---------SIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSE---------LSTGETNSLIKKFT  255 (353)
T ss_dssp             T---------TCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------CCCCCCEEE
T ss_pred             h---------ccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccccccccc---------cccccccchhhccc
Confidence            2         4555556666555 344433  2233556666666555432211000         00111223344444


Q ss_pred             ccccc----cccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhh
Q 045137          236 LSYLP----ELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWW  290 (312)
Q Consensus       236 l~~~~----~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~  290 (312)
                      +.++.    .+..++.....+++|+.|+++++ +++.+|........+++.+....|-|
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            43321    01112222345778888888775 67777765543335666665443333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=1.9e-18  Score=158.79  Aligned_cols=250  Identities=18%  Similarity=0.181  Sum_probs=138.2

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.++.++ ..|+++++|++|+|++| .+..+++..+.++++|++|++++|.+..++.+               .
T Consensus        36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------~   99 (477)
T 2id5_A           36 LLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG---------------V   99 (477)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTT---------------S
T ss_pred             EEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcc---------------c
Confidence            3789999999885 78999999999999999 88888666699999999999999988765432               2


Q ss_pred             ccCCCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137           80 LLGLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT  157 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~  157 (312)
                      +..+++|+.|+++.+.....  ..+..++    +|+.|++.++.... .. ...+..+++|++|+++++ .+..+....+
T Consensus       100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----~L~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~l  172 (477)
T 2id5_A          100 FTGLSNLTKLDISENKIVILLDYMFQDLY----NLKSLEVGDNDLVY-IS-HRAFSGLNSLEQLTLEKC-NLTSIPTEAL  172 (477)
T ss_dssp             STTCTTCCEEECTTSCCCEECTTTTTTCT----TCCEEEECCTTCCE-EC-TTSSTTCTTCCEEEEESC-CCSSCCHHHH
T ss_pred             ccCCCCCCEEECCCCccccCChhHccccc----cCCEEECCCCccce-eC-hhhccCCCCCCEEECCCC-cCcccChhHh
Confidence            34445555555544332211  1222333    45555555432111 11 123444455555555543 3333322222


Q ss_pred             ccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCcc-----------ccCCCCC-C
Q 045137          158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKI-----------AENPEMM-G  223 (312)
Q Consensus       158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----------~~~~~~~-~  223 (312)
                      .         .+++|+.|++++| .+..++  .+..+++|++|++++|.....+......           ..+..+. .
T Consensus       173 ~---------~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  242 (477)
T 2id5_A          173 S---------HLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL  242 (477)
T ss_dssp             T---------TCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred             c---------ccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence            2         3444444444444 333322  3344444444444444332222110000           0000000 1


Q ss_pred             CCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCCCCCCCCCccccccceEeee
Q 045137          224 HISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRG  285 (312)
Q Consensus       224 ~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~  285 (312)
                      ....+++|++|+++++. +..+... ...+++|+.|+++++ +++.++........+++.+..
T Consensus       243 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L  303 (477)
T 2id5_A          243 AVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNV  303 (477)
T ss_dssp             HHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEEC
T ss_pred             HhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEEC
Confidence            23567888888888863 5555443 556888999998875 566655444444455665543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=1.4e-18  Score=153.09  Aligned_cols=36  Identities=22%  Similarity=0.141  Sum_probs=19.7

Q ss_pred             cccccceEeecCCCCcccCCccCCCCCCceEEEeecc
Q 045137          168 VFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~  204 (312)
                      .+++|++|++++| .+..++.+..+++|++|++++|.
T Consensus       219 ~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          219 NMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCc
Confidence            4455555555555 44444445555555555555553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.77  E-value=1.7e-18  Score=152.42  Aligned_cols=241  Identities=17%  Similarity=0.144  Sum_probs=154.5

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCc------cccCCcc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDS------VLFGGGE   74 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~~~~~   74 (312)
                      +|++++|.+..+| .++.+++|++|++++| .+..++.  +..+++|++|++++|........+...      ...+...
T Consensus        92 ~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A           92 NLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             EEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc
Confidence            3788899888886 6899999999999999 7887776  888899999999888543211111110      0001111


Q ss_pred             chhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee
Q 045137           75 VLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI  154 (312)
Q Consensus        75 ~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~  154 (312)
                      .....+..+++|+.++++.+....+..+..++    +|+.+++.++....   . ..+..+++|++|+++++ .+..+..
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~----~L~~L~l~~n~l~~---~-~~~~~~~~L~~L~l~~n-~l~~~~~  238 (347)
T 4fmz_A          168 KDVTPIANLTDLYSLSLNYNQIEDISPLASLT----SLHYFTAYVNQITD---I-TPVANMTRLNSLKIGNN-KITDLSP  238 (347)
T ss_dssp             CCCGGGGGCTTCSEEECTTSCCCCCGGGGGCT----TCCEEECCSSCCCC---C-GGGGGCTTCCEEECCSS-CCCCCGG
T ss_pred             CCchhhccCCCCCEEEccCCcccccccccCCC----ccceeecccCCCCC---C-chhhcCCcCCEEEccCC-ccCCCcc
Confidence            11222445555666665544443333344444    56666655542211   1 12566777888888766 3443332


Q ss_pred             eccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137          155 DYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL  234 (312)
Q Consensus       155 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  234 (312)
                        ..         .+++|++|++++| .+..++.+..+++|++|++++|.. ..+ +            ....+++|++|
T Consensus       239 --~~---------~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~-~------------~~~~l~~L~~L  292 (347)
T 4fmz_A          239 --LA---------NLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDI-S------------VLNNLSQLNSL  292 (347)
T ss_dssp             --GT---------TCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCC-G------------GGGGCTTCSEE
T ss_pred             --hh---------cCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCC-h------------hhcCCCCCCEE
Confidence              22         7899999999999 788888888999999999998854 332 1            34678999999


Q ss_pred             eccccccccccc-cCCcCCCCccEEEecCCCCCCCCCCCCccccccceEee
Q 045137          235 DLSYLPELKSIF-WKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIR  284 (312)
Q Consensus       235 ~l~~~~~l~~~~-~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~  284 (312)
                      +++++. +.... .....+++|+.|++++|+ ++.++.  ......++.+.
T Consensus       293 ~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          293 FLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             ECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEES
T ss_pred             ECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccC--hhhhhccceee
Confidence            999974 44443 235678999999999985 666544  22224555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=8.4e-19  Score=151.81  Aligned_cols=241  Identities=15%  Similarity=0.154  Sum_probs=149.2

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++.+++.++.+|.++.  ++|++|++++| .+..+|.+++.++++|++|++++|.+...+             .....+.
T Consensus        12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~~   75 (306)
T 2z66_A           12 IRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-------------CCSQSDF   75 (306)
T ss_dssp             EECCSSCCSSCCSCCC--TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEE-------------EEEHHHH
T ss_pred             EEcCCCCcccCCCCCC--CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCccc-------------Ccccccc
Confidence            4566777888886443  68888888888 788888876788888888888888775321             1133444


Q ss_pred             CCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           82 GLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      .+.+|+.|+++.+....++ .+..++    +|+.|+++++... .......+..+++|++|+++++ .+.......+.  
T Consensus        76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~----~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~--  147 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVITMSSNFLGLE----QLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFN--  147 (306)
T ss_dssp             SCSCCCEEECCSCSEEEEEEEEETCT----TCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTT--
T ss_pred             cccccCEEECCCCccccChhhcCCCC----CCCEEECCCCccc-ccccchhhhhccCCCEEECCCC-cCCccchhhcc--
Confidence            5777888887766543322 233444    6778877754221 1111135677788888888865 34333323232  


Q ss_pred             cccCCCCcccccceEeecCCCCccc--CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKD--ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLS  237 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~--l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  237 (312)
                             .+++|++|++++| .+..  +| .++.+++|++|++++|.... ..+           .....+++|++|+++
T Consensus       148 -------~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-----------~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          148 -------GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSP-----------TAFNSLSSLQVLNMS  207 (306)
T ss_dssp             -------TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCE-ECT-----------TTTTTCTTCCEEECT
T ss_pred             -------cCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCC-cCH-----------HHhcCCCCCCEEECC
Confidence                   6788888888887 5543  44 67778888888888775432 211           133566788888887


Q ss_pred             cccccccccc-CCcCCCCccEEEecCCCCCCCCCCCCcc-ccccceEeeehHh
Q 045137          238 YLPELKSIFW-KPLPFTHLKEMGVRACDQLRKLPLDSNS-AKERKFVIRGEED  288 (312)
Q Consensus       238 ~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~-~~~~l~~i~~~~~  288 (312)
                      ++ .+..+.. ....+++|+.|+++++ +++..+..... .+.+++.+....+
T Consensus       208 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          208 HN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             TS-CCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             CC-ccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCC
Confidence            75 3544433 2455788888888876 45443332222 2235665543333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.76  E-value=2.8e-18  Score=150.30  Aligned_cols=108  Identities=14%  Similarity=0.025  Sum_probs=73.7

Q ss_pred             cccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccc
Q 045137          168 VFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSI  245 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  245 (312)
                      .+++|++|++++| .+..++  .+..+++|++|++++|...... +           .....+++|++|+++++ .++.+
T Consensus       191 ~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~-----------~~~~~l~~L~~L~L~~N-~l~~l  256 (332)
T 2ft3_A          191 LPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIE-N-----------GSLSFLPTLRELHLDNN-KLSRV  256 (332)
T ss_dssp             SCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-T-----------TGGGGCTTCCEEECCSS-CCCBC
T ss_pred             ccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCC-h-----------hHhhCCCCCCEEECCCC-cCeec
Confidence            3468888888888 666654  5777888888888887543221 1           13457789999999886 57777


Q ss_pred             ccCCcCCCCccEEEecCCCCCCCCCCCCccc------cccceEeeehHhhh
Q 045137          246 FWKPLPFTHLKEMGVRACDQLRKLPLDSNSA------KERKFVIRGEEDWW  290 (312)
Q Consensus       246 ~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~------~~~l~~i~~~~~~~  290 (312)
                      +.....+++|+.|+++++ +++.++......      ...++.+....+.|
T Consensus       257 p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          257 PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence            776778999999999985 677777554432      23455555444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.7e-18  Score=163.38  Aligned_cols=62  Identities=21%  Similarity=0.248  Sum_probs=39.4

Q ss_pred             CccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137          225 ISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN  291 (312)
Q Consensus       225 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~  291 (312)
                      ...+++|+.|+++++ .+..++.....+++|+.|++++| .++.++....   ..++.+....|.|.
T Consensus       297 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~L~~L~l~~N~~~  358 (597)
T 3oja_B          297 GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTH---HTLKNLTLSHNDWD  358 (597)
T ss_dssp             SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTT---CCCSEEECCSSCEE
T ss_pred             cccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcChhhc---CCCCEEEeeCCCCC
Confidence            345778888888775 45566555566788888888885 4666664333   45666654444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.76  E-value=1.9e-18  Score=149.61  Aligned_cols=216  Identities=18%  Similarity=0.210  Sum_probs=158.7

Q ss_pred             CcccCCCCCccccHH-hhCCCCCcEEecCCCCCcccc---CchhhhccccccEEEEecccccccccCCCCccccCCccch
Q 045137            1 LLDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRI---PRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVL   76 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~l---p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~   76 (312)
                      +|+|++|.++.+|.+ |+++++|++|++++| .+..+   +.. +..+++|++|++++|.+..+                
T Consensus        32 ~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l----------------   93 (306)
T 2z66_A           32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNGVITM----------------   93 (306)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCSEEEE----------------
T ss_pred             EEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCccccC----------------
Confidence            378999999999854 799999999999999 77655   444 77899999999999988643                


Q ss_pred             hhhccCCCCceEEEEEecChhhHH---HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcce-e
Q 045137           77 IQELLGLKYLEVLELTLGSYHALQ---ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE-L  152 (312)
Q Consensus        77 ~~~l~~L~~L~~l~l~~~~~~~~~---~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~-l  152 (312)
                      ...+..+++|+.|+++.+......   .+..++    +|+.|+++++....  .....+..+++|++|+++++ .+.. .
T Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~----~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~  166 (306)
T 2z66_A           94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR----NLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGN-SFQENF  166 (306)
T ss_dssp             EEEEETCTTCCEEECTTSEEESSTTTTTTTTCT----TCCEEECTTSCCEE--CSTTTTTTCTTCCEEECTTC-EEGGGE
T ss_pred             hhhcCCCCCCCEEECCCCcccccccchhhhhcc----CCCEEECCCCcCCc--cchhhcccCcCCCEEECCCC-cccccc
Confidence            234677889999998766544332   345555    89999988764321  22256788899999999986 3433 2


Q ss_pred             eeeccccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCC
Q 045137          153 KIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFEN  230 (312)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (312)
                      ....+.         .+++|++|++++| .+..+ + .++.+++|++|++++|...... .           .....+++
T Consensus       167 ~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-----------~~~~~l~~  224 (306)
T 2z66_A          167 LPDIFT---------ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-T-----------FPYKCLNS  224 (306)
T ss_dssp             ECSCCT---------TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCC-S-----------GGGTTCTT
T ss_pred             chhHHh---------hCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccC-h-----------hhccCccc
Confidence            233333         7899999999999 67775 4 7888999999999988643322 1           12356899


Q ss_pred             cCeeeccccccccccc-cCCcCC-CCccEEEecCCC
Q 045137          231 LKSLDLSYLPELKSIF-WKPLPF-THLKEMGVRACD  264 (312)
Q Consensus       231 L~~L~l~~~~~l~~~~-~~~~~~-~~L~~L~i~~c~  264 (312)
                      |++|+++++. +.... .....+ ++|+.|++++++
T Consensus       225 L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          225 LQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence            9999999974 54443 334556 489999998754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=1.2e-18  Score=151.46  Aligned_cols=222  Identities=17%  Similarity=0.159  Sum_probs=163.1

Q ss_pred             cccCCCCCc---cccHHhhCCCCCcEEecCC-CCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137            2 LDISHTTIR---ELPEELKLLVNLKCLNLRW-TGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI   77 (312)
Q Consensus         2 L~Ls~~~i~---~lp~~i~~L~~L~~L~L~~-~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (312)
                      |+|+++.+.   .+|..|+++++|++|++++ |.....+|.. ++++++|++|++++|.+..               ..+
T Consensus        55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~---------------~~p  118 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSG---------------AIP  118 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEE---------------ECC
T ss_pred             EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCC---------------cCC
Confidence            688999987   6899999999999999995 6344467776 9999999999999998853               445


Q ss_pred             hhccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCcc-ccceEEeccCcCcceeee
Q 045137           78 QELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLN-HLNELWIDNGIELEELKI  154 (312)
Q Consensus        78 ~~l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~  154 (312)
                      ..+..+++|+.|+++.+...  ....+..++    +|+.|++.++...  ..++..+..++ +|++|+++++ .+.....
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~----~L~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~  191 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLP----NLVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRN-RLTGKIP  191 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCT----TCCEEECCSSCCE--EECCGGGGCCCTTCCEEECCSS-EEEEECC
T ss_pred             HHHhCCCCCCEEeCCCCccCCcCChHHhcCC----CCCeEECcCCccc--CcCCHHHhhhhhcCcEEECcCC-eeeccCC
Confidence            56788899999999877554  223456666    8999999876432  12335777777 8999999976 4443333


Q ss_pred             eccccccccCCCCcccccceEeecCCCCccc-CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcC
Q 045137          155 DYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLK  232 (312)
Q Consensus       155 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  232 (312)
                      ..+.         .+. |+.|++++| .+.. .+ .++.+++|++|++++|.....+ +            ....+++|+
T Consensus       192 ~~~~---------~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~------------~~~~l~~L~  247 (313)
T 1ogq_A          192 PTFA---------NLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G------------KVGLSKNLN  247 (313)
T ss_dssp             GGGG---------GCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEECCBG-G------------GCCCCTTCC
T ss_pred             hHHh---------CCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCceeeec-C------------cccccCCCC
Confidence            3332         444 999999998 6654 44 6788999999999988653322 2            235678999


Q ss_pred             eeecccccccc-ccccCCcCCCCccEEEecCCCCCC-CCCCC
Q 045137          233 SLDLSYLPELK-SIFWKPLPFTHLKEMGVRACDQLR-KLPLD  272 (312)
Q Consensus       233 ~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~c~~L~-~l~~~  272 (312)
                      +|+++++. +. .++.....+++|+.|+++++. ++ .+|..
T Consensus       248 ~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~  287 (313)
T 1ogq_A          248 GLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQG  287 (313)
T ss_dssp             EEECCSSC-CEECCCGGGGGCTTCCEEECCSSE-EEEECCCS
T ss_pred             EEECcCCc-ccCcCChHHhcCcCCCEEECcCCc-ccccCCCC
Confidence            99999864 44 455556778999999999874 44 56654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=6.1e-18  Score=144.91  Aligned_cols=215  Identities=15%  Similarity=0.163  Sum_probs=155.7

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++.+++.++.+|.++  .++|++|++++| .+..+++..+.++++|++|++++|.+..               .....+.
T Consensus        16 ~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~---------------~~~~~~~   77 (285)
T 1ozn_A           16 TSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLAR---------------IDAAAFT   77 (285)
T ss_dssp             EECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCE---------------ECTTTTT
T ss_pred             EEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccce---------------eCHhhcC
Confidence            466778888998644  579999999999 8888887778999999999999998854               3345677


Q ss_pred             CCCCceEEEEEecC-hhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           82 GLKYLEVLELTLGS-YHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        82 ~L~~L~~l~l~~~~-~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      .+++|+.++++.+. ...+  ..+..++    +|+.|++.++.... . .+..+..+++|++|+++++ .+..+....+.
T Consensus        78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~----~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~  150 (285)
T 1ozn_A           78 GLALLEQLDLSDNAQLRSVDPATFHGLG----RLHTLHLDRCGLQE-L-GPGLFRGLAALQYLYLQDN-ALQALPDDTFR  150 (285)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCT----TCCEEECTTSCCCC-C-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CccCCCEEeCCCCCCccccCHHHhcCCc----CCCEEECCCCcCCE-E-CHhHhhCCcCCCEEECCCC-cccccCHhHhc
Confidence            78899999998764 3322  2344555    78888888764322 1 1246777889999999876 55555444333


Q ss_pred             cccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeec
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDL  236 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  236 (312)
                               .+++|++|++++| .++.++  .++.+++|++|++++|...... +           .....+++|++|++
T Consensus       151 ---------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-----------~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          151 ---------DLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVH-P-----------HAFRDLGRLMTLYL  208 (285)
T ss_dssp             ---------TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEEC-T-----------TTTTTCTTCCEEEC
T ss_pred             ---------cCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccC-H-----------hHccCcccccEeeC
Confidence                     6889999999988 777765  4778899999999888643321 1           13456788999999


Q ss_pred             cccccccccccC-CcCCCCccEEEecCCC
Q 045137          237 SYLPELKSIFWK-PLPFTHLKEMGVRACD  264 (312)
Q Consensus       237 ~~~~~l~~~~~~-~~~~~~L~~L~i~~c~  264 (312)
                      +++ .++.+... ...+++|+.|++++++
T Consensus       209 ~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          209 FAN-NLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence            886 46555433 4568888888888754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.75  E-value=3.8e-17  Score=149.66  Aligned_cols=111  Identities=15%  Similarity=0.132  Sum_probs=51.3

Q ss_pred             cccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccc----------cCCCCCCCCccCCCcCeeecc
Q 045137          168 VFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIA----------ENPEMMGHISPFENLKSLDLS  237 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~L~~L~l~  237 (312)
                      .+++|+.|++++| .+..++.+..+++|++|++++|...... +.....          .+.... ....+++|++|+++
T Consensus       219 ~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~  295 (466)
T 1o6v_A          219 ILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN  295 (466)
T ss_dssp             GCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECC
T ss_pred             ccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCCccCccc-cccCCCccCeEEcC
Confidence            4455555555555 4444455555555555555555322111 100000          000000 13445666666666


Q ss_pred             ccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeeh
Q 045137          238 YLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGE  286 (312)
Q Consensus       238 ~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~  286 (312)
                      ++ .++.+.. ...+++|+.|++++| +++.++.  .....+++.+...
T Consensus       296 ~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~  339 (466)
T 1o6v_A          296 EN-QLEDISP-ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFY  339 (466)
T ss_dssp             SS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCGG--GGGCTTCCEEECC
T ss_pred             CC-cccCchh-hcCCCCCCEEECcCC-cCCCchh--hccCccCCEeECC
Confidence            64 3443332 445677777777776 4444432  1222555555433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.75  E-value=5.2e-18  Score=160.28  Aligned_cols=185  Identities=19%  Similarity=0.188  Sum_probs=102.5

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccccc-CCCCcc------ccCC-
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYE-APEDSV------LFGG-   72 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~~------~~~~-   72 (312)
                      |++++|.+..++ ..|+.+++|++|++++| .+..+|.+ +.++++|++|++++|.+..++. .+....      ..+. 
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence            577788887776 45788888888888888 77778776 7888888888888887765421 111110      0000 


Q ss_pred             --ccchhhhccCCCCceEEEEEecChhhH----HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           73 --GEVLIQELLGLKYLEVLELTLGSYHAL----QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        73 --~~~~~~~l~~L~~L~~l~l~~~~~~~~----~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                        .......+..+++|+.++++.+.....    ..+..++    +|+.|+++++... .. .+..+..+++|++|+++++
T Consensus       337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~----~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS----HLQSLNLSYNEPL-SL-KTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT----TCCEEECCSCSCE-EE-CTTTTTTCTTCSEEECTTC
T ss_pred             cccccchhhhhccCcCCEEECCCCccccccCcchhcccCC----CCCEEECCCCcCC-cC-CHHHhcCCccCCeEECCCC
Confidence              011122345556666666654433221    1233444    5666666654321 11 1134555666666666654


Q ss_pred             cCcceee-eeccccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccc
Q 045137          147 IELEELK-IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       147 ~~l~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~  205 (312)
                       .+.... ...+.         .+++|+.|++++| .+... + .++.+++|++|++++|..
T Consensus       411 -~l~~~~~~~~~~---------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l  461 (606)
T 3t6q_A          411 -RLKVKDAQSPFQ---------NLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHF  461 (606)
T ss_dssp             -CEECCTTCCTTT---------TCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred             -cCCCcccchhhh---------CcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCCC
Confidence             222211 11121         5667777777776 44443 3 466677777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=6.5e-18  Score=159.44  Aligned_cols=62  Identities=16%  Similarity=0.217  Sum_probs=48.8

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccC
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEA   63 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~   63 (312)
                      +|+|++|.+..+| ..|+.+++|++|+|++| .+..+|+..++++++|++|++++|.+..+|..
T Consensus        79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  141 (597)
T 3oja_B           79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG  141 (597)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             EEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence            3678888888776 57888888888888888 77777776678888888888888887765543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=3.1e-17  Score=150.24  Aligned_cols=252  Identities=15%  Similarity=0.144  Sum_probs=120.0

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccc------cCCccc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVL------FGGGEV   75 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~~~~~~   75 (312)
                      |+|++|.+..+|. ++.+++|++|++++| .+..+++  ++++++|++|++++|.+..++. +.....      .+....
T Consensus        73 L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~  147 (466)
T 1o6v_A           73 INFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS  147 (466)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEEC
T ss_pred             EECCCCccCCchh-hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccC
Confidence            5666666666654 666666666666666 5555554  5566666666666655544331 111000      000001


Q ss_pred             hhhh---------------------ccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcC
Q 045137           76 LIQE---------------------LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTD  134 (312)
Q Consensus        76 ~~~~---------------------l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~  134 (312)
                      .+..                     +..+++|+.++++.+....+..+..++    +|+.|++.++.....    ..++.
T Consensus       148 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~----~L~~L~l~~n~l~~~----~~~~~  219 (466)
T 1o6v_A          148 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT----NLESLIATNNQISDI----TPLGI  219 (466)
T ss_dssp             CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT----TCSEEECCSSCCCCC----GGGGG
T ss_pred             CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCC----CCCEEEecCCccccc----ccccc
Confidence            1112                     333444444444433332222333333    444554444321111    11333


Q ss_pred             ccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCc
Q 045137          135 LNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGK  214 (312)
Q Consensus       135 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~  214 (312)
                      +++|++|+++++ .+..+  ..+.         .+++|+.|++++| .+..++.+..+++|++|++++|...... +...
T Consensus       220 l~~L~~L~l~~n-~l~~~--~~l~---------~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~  285 (466)
T 1o6v_A          220 LTNLDELSLNGN-QLKDI--GTLA---------SLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNIS-PLAG  285 (466)
T ss_dssp             CTTCCEEECCSS-CCCCC--GGGG---------GCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTT
T ss_pred             cCCCCEEECCCC-Ccccc--hhhh---------cCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCccCccc-cccC
Confidence            445555555543 22221  1111         4455555555555 4444444445555555555544321111 1000


Q ss_pred             cc----------cCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEee
Q 045137          215 IA----------ENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIR  284 (312)
Q Consensus       215 ~~----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~  284 (312)
                      ..          .+... .....+++|++|+++++ .+..+.. ...+++|+.|++++| +++.++.  .....+++.+.
T Consensus       286 l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~  359 (466)
T 1o6v_A          286 LTALTNLELNENQLEDI-SPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLS  359 (466)
T ss_dssp             CTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred             CCccCeEEcCCCcccCc-hhhcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCchh--hccCCCCCEEe
Confidence            00          00000 12567899999999997 4555543 567999999999997 6666642  22225566655


Q ss_pred             eh
Q 045137          285 GE  286 (312)
Q Consensus       285 ~~  286 (312)
                      ..
T Consensus       360 l~  361 (466)
T 1o6v_A          360 AG  361 (466)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.74  E-value=1.6e-17  Score=156.94  Aligned_cols=176  Identities=18%  Similarity=0.097  Sum_probs=100.7

Q ss_pred             HHhhCCC--CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccc------cCC--ccchhhhccCC
Q 045137           14 EELKLLV--NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVL------FGG--GEVLIQELLGL   83 (312)
Q Consensus        14 ~~i~~L~--~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~~~--~~~~~~~l~~L   83 (312)
                      ..+..+.  +|++|++++| .+..+++..++++++|++|++++|.+..+|..+.....      .+.  .......+..+
T Consensus       246 ~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          246 AVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             GGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             hHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence            4444444  8999999999 88898888799999999999999998876654432211      000  11112344455


Q ss_pred             CCceEEEEEecChh-hH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           84 KYLEVLELTLGSYH-AL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        84 ~~L~~l~l~~~~~~-~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ++|+.++++.+... .+  ..+..++    +|+.|+++++...........+..+++|++|+++++ .+..+....+.  
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~~~~~l~----~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~--  397 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTGCLENLE----NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFK--  397 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSSTTTTCT----TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTT--
T ss_pred             CcCCEEECCCCCcccccchhhhhccC----cCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhc--
Confidence            55555555543221 00  1123333    555666555433222211234555666666666654 33333322222  


Q ss_pred             cccCCCCcccccceEeecCCCCcccC-C--ccCCCCCCceEEEeeccc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDS-T--FLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l-~--~l~~l~~L~~L~l~~~~~  205 (312)
                             .+++|++|++++| .+... +  .+..+++|++|++++|..
T Consensus       398 -------~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          398 -------ECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             -------TCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             -------CCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCcc
Confidence                   5677777777777 44432 2  366677777777777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=1.2e-18  Score=151.37  Aligned_cols=224  Identities=17%  Similarity=0.114  Sum_probs=163.6

Q ss_pred             CcccCC-CCCc-cccHHhhCCCCCcEEecCCCCCcc-ccCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137            1 LLDISH-TTIR-ELPEELKLLVNLKCLNLRWTGALI-RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI   77 (312)
Q Consensus         1 ~L~Ls~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (312)
                      +|+|++ |.+. .+|..|+++++|++|++++| .+. .+|.. +.++++|++|++++|.+..               ..+
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~---------------~~p  142 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNALSG---------------TLP  142 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSEEES---------------CCC
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCCccCC---------------cCC
Confidence            367884 7776 78999999999999999999 666 67775 9999999999999998853               445


Q ss_pred             hhccCCCCceEEEEEecChh-hH-HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeee
Q 045137           78 QELLGLKYLEVLELTLGSYH-AL-QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKID  155 (312)
Q Consensus        78 ~~l~~L~~L~~l~l~~~~~~-~~-~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~  155 (312)
                      ..+..+++|+.|+++.+... .+ ..+..+.   ..|+.|+++++...  ...+..+..++ |++|+++++ .+......
T Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~~L~~L~L~~N~l~--~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~  215 (313)
T 1ogq_A          143 PSISSLPNLVGITFDGNRISGAIPDSYGSFS---KLFTSMTISRNRLT--GKIPPTFANLN-LAFVDLSRN-MLEGDASV  215 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGCCC---TTCCEEECCSSEEE--EECCGGGGGCC-CSEEECCSS-EEEECCGG
T ss_pred             hHHhcCCCCCeEECcCCcccCcCCHHHhhhh---hcCcEEECcCCeee--ccCChHHhCCc-ccEEECcCC-cccCcCCH
Confidence            66788899999999877653 22 2333332   26888988865321  12335666666 999999976 44443333


Q ss_pred             ccccccccCCCCcccccceEeecCCCCcc-cCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137          156 YTEIVRKRREPFVFHSLHLVTIYSCHKLK-DSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL  234 (312)
Q Consensus       156 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  234 (312)
                      .+.         .+++|+.|++++| .+. .++.+..+++|++|++++|.....+ +           .....+++|++|
T Consensus       216 ~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p-----------~~l~~l~~L~~L  273 (313)
T 1ogq_A          216 LFG---------SDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTL-P-----------QGLTQLKFLHSL  273 (313)
T ss_dssp             GCC---------TTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECC-C-----------GGGGGCTTCCEE
T ss_pred             HHh---------cCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcC-C-----------hHHhcCcCCCEE
Confidence            333         7899999999999 555 4567788999999999998754332 2           245678999999


Q ss_pred             eccccccccccccCCcCCCCccEEEecCCCCCCCCCC
Q 045137          235 DLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPL  271 (312)
Q Consensus       235 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  271 (312)
                      +++++. +.........+++|+.+++.+.+.+...|.
T Consensus       274 ~Ls~N~-l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          274 NVSFNN-LCGEIPQGGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             ECCSSE-EEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred             ECcCCc-ccccCCCCccccccChHHhcCCCCccCCCC
Confidence            999974 543333346788888888888877766554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=2e-17  Score=144.68  Aligned_cols=238  Identities=16%  Similarity=0.191  Sum_probs=172.3

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.+..+|..+.  ++|++|++++| .+..+++..++++++|++|++++|.+..               ..+..+.
T Consensus        36 l~~~~~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~   97 (330)
T 1xku_A           36 VQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISK---------------ISPGAFA   97 (330)
T ss_dssp             EECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCC---------------BCTTTTT
T ss_pred             EEecCCCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCe---------------eCHHHhc
Confidence            5678888889986554  79999999999 8999888669999999999999998854               3356678


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcce--eeeecccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE--LKIDYTEI  159 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~  159 (312)
                      .+++|+.|+++.+....++.-     ...+|+.|++.++... .. ....+..+++|++|+++++ .+..  .....+. 
T Consensus        98 ~l~~L~~L~Ls~n~l~~l~~~-----~~~~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~-  168 (330)
T 1xku_A           98 PLVKLERLYLSKNQLKELPEK-----MPKTLQELRVHENEIT-KV-RKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQ-  168 (330)
T ss_dssp             TCTTCCEEECCSSCCSBCCSS-----CCTTCCEEECCSSCCC-BB-CHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGG-
T ss_pred             CCCCCCEEECCCCcCCccChh-----hcccccEEECCCCccc-cc-CHhHhcCCccccEEECCCC-cCCccCcChhhcc-
Confidence            889999999987765433321     1138999999876432 22 1246888999999999976 3432  2222232 


Q ss_pred             ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccc
Q 045137          160 VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYL  239 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (312)
                              .+++|++|++++| .+..+|.. ..++|++|++++|.. ....+           .....+++|++|+++++
T Consensus       169 --------~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~l-~~~~~-----------~~~~~l~~L~~L~Ls~n  226 (330)
T 1xku_A          169 --------GMKKLSYIRIADT-NITTIPQG-LPPSLTELHLDGNKI-TKVDA-----------ASLKGLNNLAKLGLSFN  226 (330)
T ss_dssp             --------GCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECTTSCC-CEECT-----------GGGTTCTTCCEEECCSS
T ss_pred             --------CCCCcCEEECCCC-ccccCCcc-ccccCCEEECCCCcC-CccCH-----------HHhcCCCCCCEEECCCC
Confidence                    7899999999999 77777632 238999999998864 33211           13457799999999986


Q ss_pred             cccccccc-CCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137          240 PELKSIFW-KPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN  291 (312)
Q Consensus       240 ~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~  291 (312)
                       .++.+.. ....+++|+.|++++| +++.+|...... ..++.+....+-..
T Consensus       227 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l-~~L~~L~l~~N~i~  276 (330)
T 1xku_A          227 -SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADH-KYIQVVYLHNNNIS  276 (330)
T ss_dssp             -CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTC-SSCCEEECCSSCCC
T ss_pred             -cCceeChhhccCCCCCCEEECCCC-cCccCChhhccC-CCcCEEECCCCcCC
Confidence             4666554 3567899999999997 788888754433 66666654443333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=1.1e-17  Score=139.73  Aligned_cols=211  Identities=17%  Similarity=0.150  Sum_probs=143.6

Q ss_pred             CCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccc-ccccccCCCCccccCCccchhhhccCC
Q 045137            5 SHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTG-GFIFYEAPEDSVLFGGGEVLIQELLGL   83 (312)
Q Consensus         5 s~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L   83 (312)
                      ++..++.+|. +.  .+|++|++++| .+..+|+..+.++++|++|++++|. +..               .....+..+
T Consensus        19 ~c~~l~~ip~-~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~---------------i~~~~f~~l   79 (239)
T 2xwt_C           19 TCKDIQRIPS-LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQ---------------LESHSFYNL   79 (239)
T ss_dssp             EECSCSSCCC-CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCE---------------ECTTTEESC
T ss_pred             EccCccccCC-CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcce---------------eCHhHcCCC
Confidence            3445677776 33  38888889888 7888887668888889999998886 643               223356777


Q ss_pred             CCceEEEEEe-cChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccc---eEEeccCcCcceeeeecc
Q 045137           84 KYLEVLELTL-GSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLN---ELWIDNGIELEELKIDYT  157 (312)
Q Consensus        84 ~~L~~l~l~~-~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~l~~l~~~~~  157 (312)
                      ++|+.++++. +....++  .+..++    +|+.|++.++.-..   + +.+..+++|+   +|+++++..++.++...+
T Consensus        80 ~~L~~L~l~~~n~l~~i~~~~f~~l~----~L~~L~l~~n~l~~---l-p~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~  151 (239)
T 2xwt_C           80 SKVTHIEIRNTRNLTYIDPDALKELP----LLKFLGIFNTGLKM---F-PDLTKVYSTDIFFILEITDNPYMTSIPVNAF  151 (239)
T ss_dssp             TTCCEEEEEEETTCCEECTTSEECCT----TCCEEEEEEECCCS---C-CCCTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred             cCCcEEECCCCCCeeEcCHHHhCCCC----CCCEEeCCCCCCcc---c-cccccccccccccEEECCCCcchhhcCcccc
Confidence            8888888886 6554333  234455    78888888774322   2 2255666666   899987646666665444


Q ss_pred             ccccccCCCCcccccc-eEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccC-CCcCee
Q 045137          158 EIVRKRREPFVFHSLH-LVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPF-ENLKSL  234 (312)
Q Consensus       158 ~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L  234 (312)
                      .         .+++|+ .|++++| .+..+| .....++|++|++++|..+..+..           .....+ ++|++|
T Consensus       152 ~---------~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-----------~~~~~l~~~L~~L  210 (239)
T 2xwt_C          152 Q---------GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-----------DAFGGVYSGPSLL  210 (239)
T ss_dssp             T---------TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-----------TTTTTCSBCCSEE
T ss_pred             c---------chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-----------HHhhccccCCcEE
Confidence            3         788999 9999888 677766 222338899999988854454422           123455 889999


Q ss_pred             eccccccccccccCCcCCCCccEEEecCCCCC
Q 045137          235 DLSYLPELKSIFWKPLPFTHLKEMGVRACDQL  266 (312)
Q Consensus       235 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L  266 (312)
                      +++++ .++.++..  .+++|+.|++.++..|
T Consensus       211 ~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          211 DVSQT-SVTALPSK--GLEHLKELIARNTWTL  239 (239)
T ss_dssp             ECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred             ECCCC-ccccCChh--HhccCceeeccCccCC
Confidence            99884 57766543  7889999999887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.73  E-value=1.5e-17  Score=148.89  Aligned_cols=245  Identities=17%  Similarity=0.171  Sum_probs=160.6

Q ss_pred             cccCCCCCccccHH-hhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |+++++.+..+|.. ++.+++|++|++++| .+..+++..+..+++|++|++++|.+..++               ...+
T Consensus        50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------~~~~  113 (390)
T 3o6n_A           50 VTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLP---------------PHVF  113 (390)
T ss_dssp             EEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCC---------------TTTT
T ss_pred             EEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCC---------------HHHh
Confidence            67888889999854 799999999999999 888888766999999999999999886532               3345


Q ss_pred             cCCCCceEEEEEecChhhHHH--HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           81 LGLKYLEVLELTLGSYHALQI--LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~--l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      ..+++|+.|+++.+....++.  +..++    +|+.|+++++.... .. ...+..+++|++|+++++ .+..++.....
T Consensus       114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~----~L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~  186 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLSSLPRGIFHNTP----KLTTLSMSNNNLER-IE-DDTFQATTSLQNLQLSSN-RLTHVDLSLIP  186 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCT----TCCEEECCSSCCCB-CC-TTTTSSCTTCCEEECCSS-CCSBCCGGGCT
T ss_pred             cCCCCCCEEECCCCccCcCCHHHhcCCC----CCcEEECCCCccCc-cC-hhhccCCCCCCEEECCCC-cCCcccccccc
Confidence            566667777776555443332  23444    66677666543221 11 134556666666666654 22222111110


Q ss_pred             c-----------------------------ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecccccee
Q 045137          159 I-----------------------------VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEI  209 (312)
Q Consensus       159 ~-----------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~  209 (312)
                      .                             ....+.. .+++|+.|++++| .+.+.++++.+++|++|++++|......
T Consensus       187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~l~~~~  264 (390)
T 3o6n_A          187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKIM  264 (390)
T ss_dssp             TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCEEE
T ss_pred             ccceeecccccccccCCCCcceEEECCCCeeeecccc-ccccccEEECCCC-CCcccHHHcCCCCccEEECCCCcCCCcC
Confidence            0                             0001111 3457778888777 6666777888888899988887643322


Q ss_pred             cccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeeh
Q 045137          210 ISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGE  286 (312)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~  286 (312)
                       +           .....+++|++|+++++ .++.+......+++|+.|++++| +++.+|..... ..+++.+...
T Consensus       265 -~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-l~~L~~L~L~  326 (390)
T 3o6n_A          265 -Y-----------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ-FDRLENLYLD  326 (390)
T ss_dssp             -S-----------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHH-HTTCSEEECC
T ss_pred             -h-----------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccc-cCcCCEEECC
Confidence             1           13456789999999985 67777766777999999999997 67777654322 2556665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.73  E-value=1.3e-17  Score=145.05  Aligned_cols=109  Identities=12%  Similarity=0.005  Sum_probs=54.6

Q ss_pred             hhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceec
Q 045137          131 AFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEII  210 (312)
Q Consensus       131 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~  210 (312)
                      .+..+++|++|+++++ .+..+....+..        .+++|++|++++| .++.++....+++|++|++++|... .+.
T Consensus       139 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--------~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~  207 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLN-EIDTVNFAELAA--------SSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLA-FMG  207 (317)
T ss_dssp             CTGGGSSEEEEECTTS-CCCEEEGGGGGG--------GTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCC-EEC
T ss_pred             hhhccCCCCEEECCCC-CCCcccHHHHhh--------ccCcCCEEECCCC-cCcccccccccccCCEEECCCCcCC-cch
Confidence            3444555666666544 344333222210        3456666666665 4555554444666666666655432 221


Q ss_pred             ccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCC
Q 045137          211 SVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRAC  263 (312)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c  263 (312)
                      +            ....+++|++|+++++ .++.++.....+++|+.|+++++
T Consensus       208 ~------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          208 P------------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             G------------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred             h------------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence            1            1234556666666654 45555444445566666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.72  E-value=2.7e-17  Score=150.02  Aligned_cols=239  Identities=18%  Similarity=0.189  Sum_probs=151.3

Q ss_pred             CcccCCCCCc-ccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccc-cccC--CCCcc------c
Q 045137            1 LLDISHTTIR-ELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFI-FYEA--PEDSV------L   69 (312)
Q Consensus         1 ~L~Ls~~~i~-~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~-~~~~--~~~~~------~   69 (312)
                      +|+|++|.+. .+| ..|+.+++|++|++++| .+..+++..++++++|++|++++|.+.. .+..  +....      .
T Consensus        58 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  136 (455)
T 3v47_A           58 FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL  136 (455)
T ss_dssp             EEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEEC
T ss_pred             EEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEEC
Confidence            3678888775 554 67888899999999888 6776644458888889999888888764 2222  22211      1


Q ss_pred             cCC--ccchhhh-ccCCCCceEEEEEecChhhH--HHHhhcc------------------------------cccccceE
Q 045137           70 FGG--GEVLIQE-LLGLKYLEVLELTLGSYHAL--QILLSSN------------------------------KLKSCIRS  114 (312)
Q Consensus        70 ~~~--~~~~~~~-l~~L~~L~~l~l~~~~~~~~--~~l~~l~------------------------------~l~~~L~~  114 (312)
                      .+-  ....+.. +..+++|+.++++.+.....  ..+..+.                              .-..+|+.
T Consensus       137 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~  216 (455)
T 3v47_A          137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT  216 (455)
T ss_dssp             CSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred             CCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeee
Confidence            111  1111222 67889999999876543211  1111110                              00014555


Q ss_pred             EEEeecCCCcc-------------------------------------------------------------ccchhhhc
Q 045137          115 LYLYLTGDKKS-------------------------------------------------------------IIDATAFT  133 (312)
Q Consensus       115 L~l~~~~~~~~-------------------------------------------------------------~~~~~~l~  133 (312)
                      |+++++.....                                                             ...+..+.
T Consensus       217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  296 (455)
T 3v47_A          217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS  296 (455)
T ss_dssp             EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred             EecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence            55554421100                                                             00112355


Q ss_pred             CccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecc
Q 045137          134 DLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIIS  211 (312)
Q Consensus       134 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~  211 (312)
                      .+++|++|+++++ .+..+....+.         .+++|++|++++| .+..++  .++.+++|++|++++|.. ....+
T Consensus       297 ~l~~L~~L~Ls~n-~l~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~  364 (455)
T 3v47_A          297 HFTDLEQLTLAQN-EINKIDDNAFW---------GLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHI-RALGD  364 (455)
T ss_dssp             TCTTCCEEECTTS-CCCEECTTTTT---------TCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCC-CEECT
T ss_pred             cCCCCCEEECCCC-cccccChhHhc---------CcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcc-cccCh
Confidence            5667777777655 44444333333         7899999999999 677753  678899999999999865 33312


Q ss_pred             cCccccCCCCCCCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCC
Q 045137          212 VGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACD  264 (312)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~  264 (312)
                                 .....+++|++|+++++ .++.++.. ...+++|+.|++++++
T Consensus       365 -----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          365 -----------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             -----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -----------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence                       24467899999999995 67777654 4678999999999864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.72  E-value=2e-17  Score=157.21  Aligned_cols=241  Identities=12%  Similarity=0.072  Sum_probs=157.4

Q ss_pred             CCCCccccHHhhCCCCCcEEecCCCCCccc------------------cCchhhh--ccccccEEEEecccccccccCCC
Q 045137            6 HTTIRELPEELKLLVNLKCLNLRWTGALIR------------------IPRGLIS--KFSRLRVLRMLGTGGFIFYEAPE   65 (312)
Q Consensus         6 ~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~------------------lp~~~i~--~l~~L~~L~l~~~~~~~~~~~~~   65 (312)
                      +|.++.+|.+|+++++|++|+|++| .+..                  +|.. ++  ++++|++|++++|.+..      
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~------  263 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLT------  263 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCS------
T ss_pred             cCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCc------
Confidence            5677789999999999999999999 6777                  8987 88  99999999999998743      


Q ss_pred             CccccCCccchhhhccCCCCceEEEEEecC-hhh--H-HHHhhc------ccccccceEEEEeecCCCccccchh--hhc
Q 045137           66 DSVLFGGGEVLIQELLGLKYLEVLELTLGS-YHA--L-QILLSS------NKLKSCIRSLYLYLTGDKKSIIDAT--AFT  133 (312)
Q Consensus        66 ~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~-~~~--~-~~l~~l------~~l~~~L~~L~l~~~~~~~~~~~~~--~l~  133 (312)
                               ..+..+..+++|+.|+++.+. ...  + ..+.++      +    +|+.|++.++.-.   .++.  .++
T Consensus       264 ---------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~----~L~~L~L~~n~l~---~ip~~~~l~  327 (636)
T 4eco_A          264 ---------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE----KIQIIYIGYNNLK---TFPVETSLQ  327 (636)
T ss_dssp             ---------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG----TCCEEECCSSCCS---SCCCHHHHT
T ss_pred             ---------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC----CCCEEECCCCcCC---ccCchhhhc
Confidence                     455678888999999998775 432  3 345444      5    7889998876433   3434  688


Q ss_pred             CccccceEEeccCcCcc-eeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCC-CceEEEeeccccceec
Q 045137          134 DLNHLNELWIDNGIELE-ELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPN-LKSLSLFKCRAMEEII  210 (312)
Q Consensus       134 ~l~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~-L~~L~l~~~~~~~~~~  210 (312)
                      .+++|++|+++++ .+. .++ . +.         .+++|+.|++++| .+..+| .++.+++ |++|++++|... .+.
T Consensus       328 ~l~~L~~L~L~~N-~l~g~ip-~-~~---------~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp  393 (636)
T 4eco_A          328 KMKKLGMLECLYN-QLEGKLP-A-FG---------SEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLK-YIP  393 (636)
T ss_dssp             TCTTCCEEECCSC-CCEEECC-C-CE---------EEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred             cCCCCCEEeCcCC-cCccchh-h-hC---------CCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCc-ccc
Confidence            8889999999876 444 444 2 22         5566666666666 455555 4555666 666666665432 211


Q ss_pred             ccCcccc-------------CC-CCCCCCc-------cCCCcCeeeccccccccccccCC-cCCCCccEEEecCCCCCCC
Q 045137          211 SVGKIAE-------------NP-EMMGHIS-------PFENLKSLDLSYLPELKSIFWKP-LPFTHLKEMGVRACDQLRK  268 (312)
Q Consensus       211 ~~~~~~~-------------~~-~~~~~~~-------~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c~~L~~  268 (312)
                      .......             +. .......       .+++|++|+++++ .++.++... ..+++|+.|+++++ +++.
T Consensus       394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~  471 (636)
T 4eco_A          394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTE  471 (636)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSB
T ss_pred             hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCC
Confidence            1000000             00 0000111       4457888888775 455554432 34788889998885 5667


Q ss_pred             CCCCCccccc-------cceEeeeh
Q 045137          269 LPLDSNSAKE-------RKFVIRGE  286 (312)
Q Consensus       269 l~~~~~~~~~-------~l~~i~~~  286 (312)
                      +|........       +++.+...
T Consensus       472 i~~~~~~~~~~~~~~l~~L~~L~Ls  496 (636)
T 4eco_A          472 IPKNSLKDENENFKNTYLLTSIDLR  496 (636)
T ss_dssp             CCSSSSEETTEECTTGGGCCEEECC
T ss_pred             cCHHHhccccccccccCCccEEECc
Confidence            7776655422       56666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=4.1e-17  Score=154.16  Aligned_cols=94  Identities=18%  Similarity=0.099  Sum_probs=64.3

Q ss_pred             CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccc-cCCCCccc------cCC
Q 045137            1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY-EAPEDSVL------FGG   72 (312)
Q Consensus         1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~~~------~~~   72 (312)
                      +|+|++|.++.+ |..|+++++|++|++++| .+..+++..++++++|++|++++|.+..++ ..+.....      .+.
T Consensus        60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  138 (606)
T 3vq2_A           60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN  138 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred             EEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC
Confidence            368888888877 467888899999999888 677775545888888888888888876655 22322211      111


Q ss_pred             ---ccchhhhccCCCCceEEEEEecC
Q 045137           73 ---GEVLIQELLGLKYLEVLELTLGS   95 (312)
Q Consensus        73 ---~~~~~~~l~~L~~L~~l~l~~~~   95 (312)
                         ....+..+..+++|+.|+++.+.
T Consensus       139 ~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          139 FIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             cccceechHhHhhcCCCCEEEccCCc
Confidence               11234567777888888877554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.72  E-value=3.4e-16  Score=145.18  Aligned_cols=113  Identities=18%  Similarity=0.152  Sum_probs=83.0

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcc------ccCC-
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSV------LFGG-   72 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~------~~~~-   72 (312)
                      +|+|++|.+..++ ..|+.+++|++|++++| .+..+++..++++++|++|++++|.+..+|..  ...      ..+- 
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA  101 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC
T ss_pred             EEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc
Confidence            3788999998776 78999999999999999 78887555589999999999999998887765  111      1111 


Q ss_pred             --ccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccc--eEEEEeecC
Q 045137           73 --GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCI--RSLYLYLTG  121 (312)
Q Consensus        73 --~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L--~~L~l~~~~  121 (312)
                        ....+..++.+++|+.|+++.+.... ..+..++    .+  +.|++.++.
T Consensus       102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~----~L~L~~L~l~~n~  149 (520)
T 2z7x_B          102 FDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIA----HLNISKVLLVLGE  149 (520)
T ss_dssp             CSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGT----TSCEEEEEEEECT
T ss_pred             cccccchhhhccCCcceEEEecCcccch-hhccccc----cceeeEEEeeccc
Confidence              11234678888999999998876543 3445555    45  888887753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=1.7e-17  Score=143.81  Aligned_cols=207  Identities=16%  Similarity=0.171  Sum_probs=127.6

Q ss_pred             CCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCC
Q 045137            5 SHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLK   84 (312)
Q Consensus         5 s~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~   84 (312)
                      ..+.+..+. .+..+++|++|++++| .+..+|.  +..+++|++|++++|.+..+                 ..+..++
T Consensus        27 ~~~~~~~~~-~~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~~~-----------------~~~~~l~   85 (308)
T 1h6u_A           27 GKSNVTDTV-TQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDL-----------------APLKNLT   85 (308)
T ss_dssp             TCSSTTSEE-CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCC-----------------GGGTTCC
T ss_pred             CCCCcCcee-cHHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCCCC-----------------hhHccCC
Confidence            334444432 3456777777777777 6666663  77777777777777766431                 1166677


Q ss_pred             CceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccC
Q 045137           85 YLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRR  164 (312)
Q Consensus        85 ~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~  164 (312)
                      +|+.|+++.+....++.+..++    +|+.|+++++.-..   + ..+..+++|++|+++++ .+..+..  +.      
T Consensus        86 ~L~~L~L~~n~l~~~~~~~~l~----~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~l~~n-~l~~~~~--l~------  148 (308)
T 1h6u_A           86 KITELELSGNPLKNVSAIAGLQ----SIKTLDLTSTQITD---V-TPLAGLSNLQVLYLDLN-QITNISP--LA------  148 (308)
T ss_dssp             SCCEEECCSCCCSCCGGGTTCT----TCCEEECTTSCCCC---C-GGGTTCTTCCEEECCSS-CCCCCGG--GG------
T ss_pred             CCCEEEccCCcCCCchhhcCCC----CCCEEECCCCCCCC---c-hhhcCCCCCCEEECCCC-ccCcCcc--cc------
Confidence            7777777766555555555555    67777777653221   2 33667777777777765 4443322  22      


Q ss_pred             CCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccc
Q 045137          165 EPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKS  244 (312)
Q Consensus       165 ~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  244 (312)
                         .+++|++|++++| .+.+++.+..+++|+.|++++|.. ..+.             ....+++|++|+++++ .+..
T Consensus       149 ---~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l-~~~~-------------~l~~l~~L~~L~L~~N-~l~~  209 (308)
T 1h6u_A          149 ---GLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNKI-SDIS-------------PLASLPNLIEVHLKNN-QISD  209 (308)
T ss_dssp             ---GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCCG-------------GGGGCTTCCEEECTTS-CCCB
T ss_pred             ---CCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCcc-CcCh-------------hhcCCCCCCEEEccCC-ccCc
Confidence               6677777877777 666666677777788887777653 2221             1345677777777775 4555


Q ss_pred             cccCCcCCCCccEEEecCCCCCCCCC
Q 045137          245 IFWKPLPFTHLKEMGVRACDQLRKLP  270 (312)
Q Consensus       245 ~~~~~~~~~~L~~L~i~~c~~L~~l~  270 (312)
                      +. ....+++|+.|++++++ ++..|
T Consensus       210 ~~-~l~~l~~L~~L~l~~N~-i~~~~  233 (308)
T 1h6u_A          210 VS-PLANTSNLFIVTLTNQT-ITNQP  233 (308)
T ss_dssp             CG-GGTTCTTCCEEEEEEEE-EECCC
T ss_pred             cc-cccCCCCCCEEEccCCe-eecCC
Confidence            44 24567777777777643 44433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=7.1e-18  Score=159.36  Aligned_cols=239  Identities=18%  Similarity=0.133  Sum_probs=143.5

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      |+++++.+..+| ++..+++|++|++++| .+..+|.  + .+++|++|++++|.... +                ..+.
T Consensus       290 L~l~~~~~~~l~-~l~~~~~L~~L~l~~n-~l~~lp~--~-~l~~L~~L~l~~n~~~~-~----------------~~~~  347 (606)
T 3vq2_A          290 MSLAGVSIKYLE-DVPKHFKWQSLSIIRC-QLKQFPT--L-DLPFLKSLTLTMNKGSI-S----------------FKKV  347 (606)
T ss_dssp             EEEESCCCCCCC-CCCTTCCCSEEEEESC-CCSSCCC--C-CCSSCCEEEEESCSSCE-E----------------CCCC
T ss_pred             EEecCccchhhh-hccccccCCEEEcccc-cCccccc--C-CCCccceeeccCCcCcc-c----------------hhhc
Confidence            678888898888 8889999999999999 6788884  6 88999999999884432 0                0233


Q ss_pred             CCCCceEEEEEecChhh----HHHHhhcccccccceEEEEeecC-----------------------CCccccchhhhcC
Q 045137           82 GLKYLEVLELTLGSYHA----LQILLSSNKLKSCIRSLYLYLTG-----------------------DKKSIIDATAFTD  134 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~----~~~l~~l~~l~~~L~~L~l~~~~-----------------------~~~~~~~~~~l~~  134 (312)
                      .+++|+.++++.+....    ...+..++    +|+.|+++++.                       ...... ...+..
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~----~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~  422 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE-FSAFLS  422 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCS----CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT-TTTTTT
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCC----cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC-hhhhhc
Confidence            44455555554333221    12233333    44444444332                       111110 023444


Q ss_pred             ccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc--CC-ccCCCCCCceEEEeeccccceecc
Q 045137          135 LNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD--ST-FLAFAPNLKSLSLFKCRAMEEIIS  211 (312)
Q Consensus       135 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~-~l~~l~~L~~L~l~~~~~~~~~~~  211 (312)
                      +++|++|+++++ .+.......+.         .+++|++|++++| .+..  +| .++.+++|++|++++|...... +
T Consensus       423 l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~  490 (606)
T 3vq2_A          423 LEKLLYLDISYT-NTKIDFDGIFL---------GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-W  490 (606)
T ss_dssp             CTTCCEEECTTS-CCEECCTTTTT---------TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEEC-T
T ss_pred             cccCCEEECcCC-CCCccchhhhc---------CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccC-h
Confidence            555555555544 22222212221         5667777777776 4443  34 5666777777777766433221 1


Q ss_pred             cCccccCCCCCCCCccCCCcCeeecccccccccc-ccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhh
Q 045137          212 VGKIAENPEMMGHISPFENLKSLDLSYLPELKSI-FWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWW  290 (312)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~  290 (312)
                                 .....+++|++|+++++ .+..+ +.....+++|+.|++++| +++.+|......+.+++.+....|.|
T Consensus       491 -----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          491 -----------GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             -----------TTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             -----------hhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence                       23467889999999987 45555 344677899999999997 58888887444434577776555555


Q ss_pred             hh
Q 045137          291 NR  292 (312)
Q Consensus       291 ~~  292 (312)
                      .+
T Consensus       558 ~c  559 (606)
T 3vq2_A          558 AC  559 (606)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.71  E-value=4.9e-17  Score=159.34  Aligned_cols=117  Identities=18%  Similarity=0.227  Sum_probs=81.8

Q ss_pred             CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc-ccCCCCcccc------CC
Q 045137            1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF-YEAPEDSVLF------GG   72 (312)
Q Consensus         1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~------~~   72 (312)
                      +|+|++|.|+.+ |..|+++++|++|+|++|..+..++++.++++++|++|++++|.+..+ |..+......      ..
T Consensus        28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred             EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence            378888988876 578889999999999988666777666688899999999988888765 3344333111      11


Q ss_pred             --ccchhhh--ccCCCCceEEEEEecChhhH---HHHhhcccccccceEEEEeecC
Q 045137           73 --GEVLIQE--LLGLKYLEVLELTLGSYHAL---QILLSSNKLKSCIRSLYLYLTG  121 (312)
Q Consensus        73 --~~~~~~~--l~~L~~L~~l~l~~~~~~~~---~~l~~l~~l~~~L~~L~l~~~~  121 (312)
                        ....+..  +..+++|+.|+++.+.....   ..+.+++    +|+.|+++++.
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~----~L~~L~Ls~N~  159 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN----SLKSIDFSSNQ  159 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS----SCCEEEEESSC
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC----CCCEEECCCCc
Confidence              1112222  77888899999987765432   3456667    88899988764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=3.2e-17  Score=150.91  Aligned_cols=209  Identities=14%  Similarity=0.073  Sum_probs=103.6

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |+|++|.+..++ ..|+.+++|++|+|++| .+..+++  ++.+++|++|++++|.+..++                   
T Consensus        39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------------------   96 (487)
T 3oja_A           39 LDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELL-------------------   96 (487)
T ss_dssp             EECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEE-------------------
T ss_pred             EEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCC-------------------
Confidence            445555554442 44555555555555555 3443333  445555555555555443211                   


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                       ..++|+.|+++.+....+.. ..++    +|+.|+++++......  +..+..+++|++|+++++ .+.......+.. 
T Consensus        97 -~~~~L~~L~L~~N~l~~~~~-~~l~----~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~-  166 (487)
T 3oja_A           97 -VGPSIETLHAANNNISRVSC-SRGQ----GKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLN-EIDTVNFAELAA-  166 (487)
T ss_dssp             -ECTTCCEEECCSSCCCCEEE-CCCS----SCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTS-CCCEEEGGGGGG-
T ss_pred             -CCCCcCEEECcCCcCCCCCc-cccC----CCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCC-CCCCcChHHHhh-
Confidence             12444555544333221110 1122    5566666554322111  124455666666666654 444433322210 


Q ss_pred             cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLP  240 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  240 (312)
                             .+++|+.|++++| .+..++....+++|++|++++|... .+.+            ....+++|+.|+++++ 
T Consensus       167 -------~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~------------~~~~l~~L~~L~Ls~N-  224 (487)
T 3oja_A          167 -------SSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLA-FMGP------------EFQSAAGVTWISLRNN-  224 (487)
T ss_dssp             -------GTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCC-EECG------------GGGGGTTCSEEECTTS-
T ss_pred             -------hCCcccEEecCCC-ccccccccccCCCCCEEECCCCCCC-CCCH------------hHcCCCCccEEEecCC-
Confidence                   3566777777766 5555555555667777777666432 2211            2345566777777664 


Q ss_pred             cccccccCCcCCCCccEEEecCCC
Q 045137          241 ELKSIFWKPLPFTHLKEMGVRACD  264 (312)
Q Consensus       241 ~l~~~~~~~~~~~~L~~L~i~~c~  264 (312)
                      .+..++.....+++|+.|++++++
T Consensus       225 ~l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          225 KLVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             cCcccchhhccCCCCCEEEcCCCC
Confidence            455555555556667777766653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.71  E-value=2.1e-17  Score=141.61  Aligned_cols=195  Identities=20%  Similarity=0.238  Sum_probs=148.5

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccc-ccccccCCCCccccCCccchhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTG-GFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|++++|.++.+| ..|+.+++|++|++++| .+..+++..+.++++|++|++++|. +..               ....
T Consensus        36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~---------------~~~~   99 (285)
T 1ozn_A           36 RIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS---------------VDPA   99 (285)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC---------------CCTT
T ss_pred             EEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccc---------------cCHH
Confidence            3789999999887 67999999999999999 8888865569999999999999997 543               3345


Q ss_pred             hccCCCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeec
Q 045137           79 ELLGLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDY  156 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~  156 (312)
                      .+..+++|+.|+++.+....+  ..+..++    +|+.|+++++... .... ..+..+++|++|+++++ .+..++...
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----~L~~L~l~~n~l~-~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~  172 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLA----ALQYLYLQDNALQ-ALPD-DTFRDLGNLTHLFLHGN-RISSVPERA  172 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCT----TCCEEECCSSCCC-CCCT-TTTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCc----CCCEEECCCCccc-ccCH-hHhccCCCccEEECCCC-cccccCHHH
Confidence            677888999999986655433  2345556    8999999876432 2221 45788999999999976 666665544


Q ss_pred             cccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137          157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL  234 (312)
Q Consensus       157 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  234 (312)
                      +.         .+++|++|++++| .+..+ + .++.+++|++|++++|...... .           .....+++|++|
T Consensus       173 ~~---------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-----------~~~~~l~~L~~L  230 (285)
T 1ozn_A          173 FR---------GLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALP-T-----------EALAPLRALQYL  230 (285)
T ss_dssp             TT---------TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC-H-----------HHHTTCTTCCEE
T ss_pred             hc---------CccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCC-H-----------HHcccCcccCEE
Confidence            43         7899999999999 66664 4 7888999999999998643321 1           123567899999


Q ss_pred             eccccc
Q 045137          235 DLSYLP  240 (312)
Q Consensus       235 ~l~~~~  240 (312)
                      ++++++
T Consensus       231 ~l~~N~  236 (285)
T 1ozn_A          231 RLNDNP  236 (285)
T ss_dssp             ECCSSC
T ss_pred             eccCCC
Confidence            998865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.71  E-value=9.8e-17  Score=146.44  Aligned_cols=157  Identities=14%  Similarity=0.078  Sum_probs=98.9

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|++++|.++.+| +++.+++|++|++++| .+..+|   ++.+++|++|++++|.+..+                  .+
T Consensus        46 ~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~------------------~~  102 (457)
T 3bz5_A           46 SLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNL------------------DV  102 (457)
T ss_dssp             EEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCC------------------CC
T ss_pred             EEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCcee------------------ec
Confidence            3678888888887 6888888888888888 677774   77888888888888877531                  15


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ..+++|+.|+++.+....++ +..++    +|+.|+++++.-..   +  .++.+++|++|+++++.....+.   +.  
T Consensus       103 ~~l~~L~~L~L~~N~l~~l~-~~~l~----~L~~L~l~~N~l~~---l--~l~~l~~L~~L~l~~n~~~~~~~---~~--  167 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKLD-VSQNP----LLTYLNCARNTLTE---I--DVSHNTQLTELDCHLNKKITKLD---VT--  167 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCCC-CTTCT----TCCEEECTTSCCSC---C--CCTTCTTCCEEECTTCSCCCCCC---CT--
T ss_pred             CCCCcCCEEECCCCcCCeec-CCCCC----cCCEEECCCCccce---e--ccccCCcCCEEECCCCCcccccc---cc--
Confidence            56677777777766544332 44444    67777766543221   1  24556667777776654333331   11  


Q ss_pred             cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~  204 (312)
                             .+++|+.|++++| .++.++ ++.+++|+.|++++|.
T Consensus       168 -------~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          168 -------PQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             -------TCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSC
T ss_pred             -------cCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCc
Confidence                   4566666666665 555554 5555666666665553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.71  E-value=4.3e-16  Score=146.00  Aligned_cols=146  Identities=14%  Similarity=0.091  Sum_probs=86.6

Q ss_pred             cCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC----ccCCCCCCceEEEeeccccce
Q 045137          133 TDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST----FLAFAPNLKSLSLFKCRAMEE  208 (312)
Q Consensus       133 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~----~l~~l~~L~~L~l~~~~~~~~  208 (312)
                      ..+++|++|+++++ .+.......+.         .+++|+.|++++| .++.++    .++.+++|++|++++|.....
T Consensus       350 ~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~  418 (562)
T 3a79_B          350 PSPSSFTFLNFTQN-VFTDSVFQGCS---------TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSH  418 (562)
T ss_dssp             SSCCCCCEEECCSS-CCCTTTTTTCC---------SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred             cCCCCceEEECCCC-ccccchhhhhc---------ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence            56678888888876 33332222222         5667777777776 555443    355667777777766654321


Q ss_pred             ecccCccccCCCC-----------CCCCccC-CCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccc
Q 045137          209 IISVGKIAENPEM-----------MGHISPF-ENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSA  276 (312)
Q Consensus       209 ~~~~~~~~~~~~~-----------~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~  276 (312)
                      +.. .....++.+           ......+ ++|++|+++++ .++.++.....+++|+.|+++++ +++.+|......
T Consensus       419 ~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~  495 (562)
T 3a79_B          419 AYD-RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDR  495 (562)
T ss_dssp             CSS-CCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTT
T ss_pred             cCh-hhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhc
Confidence            111 000000000           0011223 68999999886 68888777678999999999985 788898874444


Q ss_pred             cccceEeeehHhhhhh
Q 045137          277 KERKFVIRGEEDWWNR  292 (312)
Q Consensus       277 ~~~l~~i~~~~~~~~~  292 (312)
                      ..+++.+....|.|.+
T Consensus       496 l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          496 LTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CTTCCCEECCSCCBCC
T ss_pred             CCCCCEEEecCCCcCC
Confidence            4667777644444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=5.8e-17  Score=153.97  Aligned_cols=141  Identities=12%  Similarity=0.013  Sum_probs=84.8

Q ss_pred             hcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccC--CCCCCceEEEeeccccce
Q 045137          132 FTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLA--FAPNLKSLSLFKCRAMEE  208 (312)
Q Consensus       132 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~--~l~~L~~L~l~~~~~~~~  208 (312)
                      +..+++|++|+++++ .+..++.......  .+....+++|+.|++++| .+..+| .+.  .+++|++|++++|.... 
T Consensus       453 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          453 FSTGSPLSSINLMGN-MLTEIPKNSLKDE--NENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-  527 (636)
T ss_dssp             HHTTCCCSEEECCSS-CCSBCCSSSSEET--TEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             HccCCCCCEEECCCC-CCCCcCHHHhccc--cccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-
Confidence            344566667776654 3443333222100  000001238888888888 666777 454  78888888888876433 


Q ss_pred             ecccCccccCCCCCCCCccCCCcCeeeccc------cccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceE
Q 045137          209 IISVGKIAENPEMMGHISPFENLKSLDLSY------LPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFV  282 (312)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~  282 (312)
                      + +           .....+++|++|++++      +.-...++.....+++|+.|++++| ++..+|....   ..++.
T Consensus       528 i-p-----------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~  591 (636)
T 4eco_A          528 F-P-----------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT---PNISV  591 (636)
T ss_dssp             C-C-----------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC---TTCCE
T ss_pred             c-C-----------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh---CcCCE
Confidence            2 1           2445678889988854      3223344445667888999999886 4577877533   56777


Q ss_pred             eeehHhhhhhc
Q 045137          283 IRGEEDWWNRL  293 (312)
Q Consensus       283 i~~~~~~~~~~  293 (312)
                      +....+-+.++
T Consensus       592 L~Ls~N~l~~~  602 (636)
T 4eco_A          592 LDIKDNPNISI  602 (636)
T ss_dssp             EECCSCTTCEE
T ss_pred             EECcCCCCccc
Confidence            66555545443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.70  E-value=4.6e-17  Score=142.52  Aligned_cols=238  Identities=14%  Similarity=0.150  Sum_probs=166.9

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.+..+|..+.  ++|++|++++| .+..+++..+.++++|++|++++|.+..               .....+.
T Consensus        38 l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~   99 (332)
T 2ft3_A           38 VQCSDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISK---------------IHEKAFS   99 (332)
T ss_dssp             EECCSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE---------------ECGGGST
T ss_pred             EECCCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCc---------------cCHhHhh
Confidence            5678888888887663  78999999999 7888876668999999999999998754               3346678


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcce--eeeecccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE--LKIDYTEI  159 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~  159 (312)
                      .+++|+.|+++.+....++...     ..+|+.|++.++... .... ..+..+++|++|+++++ .++.  .....+. 
T Consensus       100 ~l~~L~~L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~-~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~-  170 (332)
T 2ft3_A          100 PLRKLQKLYISKNHLVEIPPNL-----PSSLVELRIHDNRIR-KVPK-GVFSGLRNMNCIEMGGN-PLENSGFEPGAFD-  170 (332)
T ss_dssp             TCTTCCEEECCSSCCCSCCSSC-----CTTCCEEECCSSCCC-CCCS-GGGSSCSSCCEEECCSC-CCBGGGSCTTSSC-
T ss_pred             CcCCCCEEECCCCcCCccCccc-----cccCCEEECCCCccC-ccCH-hHhCCCccCCEEECCCC-ccccCCCCccccc-
Confidence            8889999999877654333211     127899998876432 2221 45788899999999876 4432  1112221 


Q ss_pred             ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccc
Q 045137          160 VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYL  239 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (312)
                              .+ +|++|++++| .+..+|.. ..++|++|++++|...... +           .....+++|++|+++++
T Consensus       171 --------~l-~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~i~~~~-~-----------~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          171 --------GL-KLNYLRISEA-KLTGIPKD-LPETLNELHLDHNKIQAIE-L-----------EDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             --------SC-CCSCCBCCSS-BCSSCCSS-SCSSCSCCBCCSSCCCCCC-T-----------TSSTTCTTCSCCBCCSS
T ss_pred             --------CC-ccCEEECcCC-CCCccCcc-ccCCCCEEECCCCcCCccC-H-----------HHhcCCCCCCEEECCCC
Confidence                    34 8999999998 67777631 2379999999888643221 1           24467799999999986


Q ss_pred             cccccccc-CCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137          240 PELKSIFW-KPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR  292 (312)
Q Consensus       240 ~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~  292 (312)
                       .+..+.. ....+++|+.|+++++ +++.+|...... .+++.+....+...+
T Consensus       228 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l-~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          228 -QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDL-KLLQVVYLHTNNITK  278 (332)
T ss_dssp             -CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGC-TTCCEEECCSSCCCB
T ss_pred             -cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcC-ccCCEEECCCCCCCc
Confidence             5666554 3567999999999986 788888764333 667777655443333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=3.2e-16  Score=145.36  Aligned_cols=144  Identities=17%  Similarity=0.175  Sum_probs=85.5

Q ss_pred             cCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccC---C-ccCCCCCCceEEEeeccccce
Q 045137          133 TDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS---T-FLAFAPNLKSLSLFKCRAMEE  208 (312)
Q Consensus       133 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l---~-~l~~l~~L~~L~l~~~~~~~~  208 (312)
                      ..+++|++|+++++ .+.......+.         .+++|+.|++++| .+..+   | .++.+++|++|++++|.....
T Consensus       321 ~~l~~L~~L~Ls~n-~l~~~~~~~~~---------~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  389 (520)
T 2z7x_B          321 SKISPFLHLDFSNN-LLTDTVFENCG---------HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYD  389 (520)
T ss_dssp             SSCCCCCEEECCSS-CCCTTTTTTCC---------CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred             hhCCcccEEEeECC-ccChhhhhhhc---------cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence            56778888888876 33332222222         5677777777777 55542   2 366677777777776654331


Q ss_pred             ecccCccccCCCCC-----------CCCccC-CCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccc
Q 045137          209 IISVGKIAENPEMM-----------GHISPF-ENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSA  276 (312)
Q Consensus       209 ~~~~~~~~~~~~~~-----------~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~  276 (312)
                      +.. .....++.+.           .....+ ++|++|+++++ .++.++.....+++|+.|++++| +++.+|......
T Consensus       390 l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~  466 (520)
T 2z7x_B          390 EKK-GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDR  466 (520)
T ss_dssp             GGG-CSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             ccc-chhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhcc
Confidence            211 0000000000           001122 68999999886 57777766668999999999997 788898874444


Q ss_pred             cccceEeeehHhhh
Q 045137          277 KERKFVIRGEEDWW  290 (312)
Q Consensus       277 ~~~l~~i~~~~~~~  290 (312)
                      ..+++.+....|.|
T Consensus       467 l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          467 LTSLQKIWLHTNPW  480 (520)
T ss_dssp             CTTCCEEECCSSCB
T ss_pred             CCcccEEECcCCCC
Confidence            46677765443333

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.7e-17  Score=161.42  Aligned_cols=253  Identities=14%  Similarity=0.076  Sum_probs=151.5

Q ss_pred             CcccCCCCCcc------------------ccHHhh--CCCCCcEEecCCCCCccccCchhhhccccccEEEEeccc-ccc
Q 045137            1 LLDISHTTIRE------------------LPEELK--LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTG-GFI   59 (312)
Q Consensus         1 ~L~Ls~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~-~~~   59 (312)
                      +|+|++|.++.                  +|.+++  ++++|++|+|++|.....+|.. ++++++|++|++++|. +..
T Consensus       452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg  530 (876)
T 4ecn_A          452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISA  530 (876)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCH
T ss_pred             EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCccc
Confidence            37889999987                  998887  9999999999999667778876 9999999999999997 642


Q ss_pred             --cccCCCCccccCCccchhh-hccCCCCceEEEEEecChhhHH---HHhhcccccccceEEEEeecCCCccccchhhhc
Q 045137           60 --FYEAPEDSVLFGGGEVLIQ-ELLGLKYLEVLELTLGSYHALQ---ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFT  133 (312)
Q Consensus        60 --~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~l~l~~~~~~~~~---~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~  133 (312)
                        +|.++          ..+. .+..+++|+.|+++.+....++   .+.+++    +|+.|+++++...   .+ +.+.
T Consensus       531 ~~iP~~i----------~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~----~L~~L~Ls~N~l~---~l-p~~~  592 (876)
T 4ecn_A          531 AQLKADW----------TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV----KLGLLDCVHNKVR---HL-EAFG  592 (876)
T ss_dssp             HHHHHHH----------HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCT----TCCEEECTTSCCC---BC-CCCC
T ss_pred             ccchHHH----------HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCC----CCCEEECCCCCcc---cc-hhhc
Confidence              33211          1111 2334557788887766554443   355555    6777777765432   33 2667


Q ss_pred             CccccceEEeccCcCcceeeeeccccccccCCCCcccc-cceEeecCCCCcccCC-ccCCC--CCCceEEEeecccccee
Q 045137          134 DLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHS-LHLVTIYSCHKLKDST-FLAFA--PNLKSLSLFKCRAMEEI  209 (312)
Q Consensus       134 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~l~-~l~~l--~~L~~L~l~~~~~~~~~  209 (312)
                      .+++|+.|+++++ .+..++....          .+++ |+.|++++| .+..+| .+..+  ++|+.|++++|.....+
T Consensus       593 ~L~~L~~L~Ls~N-~l~~lp~~l~----------~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          593 TNVKLTDLKLDYN-QIEEIPEDFC----------AFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             TTSEESEEECCSS-CCSCCCTTSC----------EECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred             CCCcceEEECcCC-ccccchHHHh----------hccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence            7777788887765 3443332222          5566 777777777 455665 33333  33777777666543221


Q ss_pred             cccC-cc---------------ccCCCCCCC-CccCCCcCeeeccccccccccccCCcC--------CCCccEEEecCCC
Q 045137          210 ISVG-KI---------------AENPEMMGH-ISPFENLKSLDLSYLPELKSIFWKPLP--------FTHLKEMGVRACD  264 (312)
Q Consensus       210 ~~~~-~~---------------~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~--------~~~L~~L~i~~c~  264 (312)
                      .... ..               ..+..+... ...+++|+.|+++++ .+..++.....        +++|+.|++++| 
T Consensus       661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-  738 (876)
T 4ecn_A          661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-  738 (876)
T ss_dssp             SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-
T ss_pred             ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-
Confidence            0000 00               000000001 124567777777775 45555443222        227888888876 


Q ss_pred             CCCCCCCCCc-cccccceEeeeh
Q 045137          265 QLRKLPLDSN-SAKERKFVIRGE  286 (312)
Q Consensus       265 ~L~~l~~~~~-~~~~~l~~i~~~  286 (312)
                      +++.+|.... ...++++.+...
T Consensus       739 ~L~~lp~~l~~~~l~~L~~L~Ls  761 (876)
T 4ecn_A          739 KLTSLSDDFRATTLPYLSNMDVS  761 (876)
T ss_dssp             CCCCCCGGGSTTTCTTCCEEECC
T ss_pred             CCccchHHhhhccCCCcCEEEeC
Confidence            6767775443 122566666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.70  E-value=6.2e-17  Score=151.08  Aligned_cols=115  Identities=16%  Similarity=0.141  Sum_probs=64.5

Q ss_pred             cccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccC-CCCcc------ccCC-
Q 045137            2 LDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEA-PEDSV------LFGG-   72 (312)
Q Consensus         2 L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~------~~~~-   72 (312)
                      |+|++|.++.+ |..|+.+++|++|++++| .+..+++..++++++|++|++++|.+..++.+ +....      ..+- 
T Consensus        31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             EECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             EECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence            56777777655 356777777777777777 66666554567777777777777766554432 21110      0000 


Q ss_pred             --ccchhhhccCCCCceEEEEEecC-hhhH--HHHhhcccccccceEEEEeecC
Q 045137           73 --GEVLIQELLGLKYLEVLELTLGS-YHAL--QILLSSNKLKSCIRSLYLYLTG  121 (312)
Q Consensus        73 --~~~~~~~l~~L~~L~~l~l~~~~-~~~~--~~l~~l~~l~~~L~~L~l~~~~  121 (312)
                        ....+..+..+++|+.|+++.+. ...+  ..+..++    +|+.|++.++.
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~----~L~~L~L~~n~  159 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT----SLNELEIKALS  159 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC----EEEEEEEEETT
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhccc----ccCeeeccCCc
Confidence              11122345667777777777654 2222  2344444    66777776653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=1.7e-16  Score=132.45  Aligned_cols=198  Identities=15%  Similarity=0.055  Sum_probs=140.3

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEec-ccccccccCCCCccccCCccchhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLG-TGGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|++++|.++.+| ..|+.+++|++|++++|..+..+++..+.++++|++|++++ |.+..               ....
T Consensus        35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---------------i~~~   99 (239)
T 2xwt_C           35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---------------IDPD   99 (239)
T ss_dssp             EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---------------ECTT
T ss_pred             EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---------------cCHH
Confidence            3688899999887 47889999999999999338888876688999999999988 77754               2234


Q ss_pred             hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccc-eEEeccCcCcceeeeecc
Q 045137           79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLN-ELWIDNGIELEELKIDYT  157 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~l~~l~~~~~  157 (312)
                      .+..+++|+.++++.+....++.+..+..+. .++.|+++++........ ..+..+++|+ +|+++++ .++.++...+
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~-~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n-~l~~i~~~~~  176 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTD-IFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN-GFTSVQGYAF  176 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCCCTTCCBCC-SEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC-CCCEECTTTT
T ss_pred             HhCCCCCCCEEeCCCCCCccccccccccccc-cccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC-CCcccCHhhc
Confidence            5677888999998877665555555555222 133888887623333322 4577888899 9999865 5665554444


Q ss_pred             ccccccCCCCcccccceEeecCCCCcccCC--ccCCC-CCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137          158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFA-PNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL  234 (312)
Q Consensus       158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  234 (312)
                                ..++|++|++++|..++.++  .+..+ ++|+.|+++++.. ..+              ....|++|+.|
T Consensus       177 ----------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l--------------~~~~~~~L~~L  231 (239)
T 2xwt_C          177 ----------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TAL--------------PSKGLEHLKEL  231 (239)
T ss_dssp             ----------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCC--------------CCTTCTTCSEE
T ss_pred             ----------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccC--------------ChhHhccCcee
Confidence                      33789999999985577765  56778 8999999988754 332              12367889998


Q ss_pred             ecccccc
Q 045137          235 DLSYLPE  241 (312)
Q Consensus       235 ~l~~~~~  241 (312)
                      .+.++..
T Consensus       232 ~l~~~~~  238 (239)
T 2xwt_C          232 IARNTWT  238 (239)
T ss_dssp             ECTTC--
T ss_pred             eccCccC
Confidence            8877643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=4.7e-17  Score=143.69  Aligned_cols=223  Identities=15%  Similarity=0.174  Sum_probs=163.4

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|++++|.++.++ ..|+.+++|++|++++| .+..+|..+++++++|++|++++|.+..++.              ...
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------------~~~  144 (353)
T 2z80_A           80 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE--------------TSL  144 (353)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCS--------------SCS
T ss_pred             EEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCc--------------hhh
Confidence            3789999999875 77999999999999999 8999998878999999999999998864321              135


Q ss_pred             ccCCCCceEEEEEecC-hhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeec
Q 045137           80 LLGLKYLEVLELTLGS-YHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDY  156 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~-~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~  156 (312)
                      +..+++|+.++++.+. ...+  ..+..++    +|+.|+++++.....  .+..+..+++|++|+++++ .+..++...
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~----~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~~~~  217 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLT----FLEELEIDASDLQSY--EPKSLKSIQNVSHLILHMK-QHILLLEIF  217 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTTTTCC----EEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEECS-CSTTHHHHH
T ss_pred             hccCCCCcEEECCCCccccccCHHHccCCC----CCCEEECCCCCcCcc--CHHHHhccccCCeecCCCC-ccccchhhh
Confidence            6778899999998763 3222  2455566    899999998753322  2357888999999999976 455544333


Q ss_pred             cccccccCCCCcccccceEeecCCCCcccCC-----ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCc
Q 045137          157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDST-----FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL  231 (312)
Q Consensus       157 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  231 (312)
                      ..         .+++|+.|++++| .+..++     .....+.++.+++.++......+.        .+......+++|
T Consensus       218 ~~---------~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~--------~l~~~l~~l~~L  279 (353)
T 2z80_A          218 VD---------VTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF--------QVMKLLNQISGL  279 (353)
T ss_dssp             HH---------HTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHH--------HHHHHHHTCTTC
T ss_pred             hh---------hcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchh--------hhHHHHhcccCC
Confidence            32         5799999999999 666543     233467888888887754322110        011134568999


Q ss_pred             CeeeccccccccccccCC-cCCCCccEEEecCCC
Q 045137          232 KSLDLSYLPELKSIFWKP-LPFTHLKEMGVRACD  264 (312)
Q Consensus       232 ~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c~  264 (312)
                      ++|+++++ .++.++... ..+++|+.|++++++
T Consensus       280 ~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          280 LELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            99999996 677777664 678999999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=5.1e-17  Score=138.52  Aligned_cols=209  Identities=20%  Similarity=0.135  Sum_probs=127.2

Q ss_pred             CCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCC
Q 045137            5 SHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLK   84 (312)
Q Consensus         5 s~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~   84 (312)
                      ++..+..+|..+.  ++|++|++++| .+..++...+.++++|++|++++|.+..               .....+..++
T Consensus        15 ~~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~   76 (276)
T 2z62_A           15 MELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQT---------------IEDGAYQSLS   76 (276)
T ss_dssp             TTSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCE---------------ECTTTTTTCT
T ss_pred             cCCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCc---------------cCHHHccCCc
Confidence            3445566665443  46777888777 6777766557777788888887776643               2233456667


Q ss_pred             CceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceee-eecccccc
Q 045137           85 YLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK-IDYTEIVR  161 (312)
Q Consensus        85 ~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~  161 (312)
                      +|+.|+++.+.....  ..+..++    +|+.|++.++.......  ..+..+++|++|+++++ .+..+. ...+.   
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~----~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~---  146 (276)
T 2z62_A           77 HLSTLILTGNPIQSLALGAFSGLS----SLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHN-LIQSFKLPEYFS---  146 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCT----TCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSS-CCCCCCCCGGGG---
T ss_pred             CCCEEECCCCccCccChhhhcCCc----cccEEECCCCCccccCc--hhcccCCCCCEEECcCC-ccceecCchhhc---
Confidence            777777765543322  2344445    67777777653322111  24667788888888865 444432 22232   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCc----eEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLK----SLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD  235 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  235 (312)
                            .+++|++|++++| .+..++  .+..+++|+    +|+++++... .+..            ......+|++|+
T Consensus       147 ------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~------------~~~~~~~L~~L~  206 (276)
T 2z62_A          147 ------NLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP------------GAFKEIRLKELA  206 (276)
T ss_dssp             ------GCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECT------------TSSCSCCEEEEE
T ss_pred             ------cCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCCccc-ccCc------------cccCCCcccEEE
Confidence                  6788888888888 666644  444555555    6777776532 2211            112234788888


Q ss_pred             ccccccccccccC-CcCCCCccEEEecC
Q 045137          236 LSYLPELKSIFWK-PLPFTHLKEMGVRA  262 (312)
Q Consensus       236 l~~~~~l~~~~~~-~~~~~~L~~L~i~~  262 (312)
                      ++++ .++.+... ...+++|+.|++++
T Consensus       207 L~~n-~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          207 LDTN-QLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             CCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred             CCCC-ceeecCHhHhcccccccEEEccC
Confidence            8875 46666654 35688888888875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.69  E-value=8.9e-17  Score=136.63  Aligned_cols=77  Identities=22%  Similarity=0.284  Sum_probs=57.4

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.++.+|..+.  ++|++|++++| .+..+++..+.++++|++|++++|.+..++               ...+.
T Consensus        21 l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~---------------~~~~~   82 (270)
T 2o6q_A           21 VDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLP---------------AGIFK   82 (270)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCC---------------TTTTS
T ss_pred             EEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeC---------------hhhhc
Confidence            5778888888886554  68899999999 788888766889999999999988875422               23345


Q ss_pred             CCCCceEEEEEecCh
Q 045137           82 GLKYLEVLELTLGSY   96 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~   96 (312)
                      .+++|+.|+++.+..
T Consensus        83 ~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           83 ELKNLETLWVTDNKL   97 (270)
T ss_dssp             SCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcC
Confidence            667777777765543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.68  E-value=3.9e-17  Score=142.15  Aligned_cols=231  Identities=15%  Similarity=0.100  Sum_probs=167.8

Q ss_pred             ccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            3 DISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         3 ~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      +++.+.+...+ ..+..+++|++|++++| .+..+++..+.++++|++|++++|.+...                 ..+.
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~   77 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYET-----------------LDLE   77 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEE-----------------EEET
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcc-----------------hhhh
Confidence            45666666554 45567889999999999 88888876699999999999999988531                 1277


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+++|+.|+++.+....++   ..+    .|+.|+++++......     ...+++|++|+++++ .+..+....+.   
T Consensus        78 ~l~~L~~L~Ls~n~l~~l~---~~~----~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N-~l~~~~~~~~~---  141 (317)
T 3o53_A           78 SLSTLRTLDLNNNYVQELL---VGP----SIETLHAANNNISRVS-----CSRGQGKKNIYLANN-KITMLRDLDEG---  141 (317)
T ss_dssp             TCTTCCEEECCSSEEEEEE---ECT----TCCEEECCSSCCSEEE-----ECCCSSCEEEECCSS-CCCSGGGBCTG---
T ss_pred             hcCCCCEEECcCCcccccc---CCC----CcCEEECCCCccCCcC-----ccccCCCCEEECCCC-CCCCccchhhh---
Confidence            8899999999877553322   223    7899998876432221     223678999999976 55554433333   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCC--cc-CCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDST--FL-AFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY  238 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (312)
                            .+++|++|++++| .+..++  .+ ..+++|++|++++|......              ....+++|++|++++
T Consensus       142 ------~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------~~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          142 ------CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------------GQVVFAKLKTLDLSS  200 (317)
T ss_dssp             ------GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------------CCCCCTTCCEEECCS
T ss_pred             ------ccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccc--------------cccccccCCEEECCC
Confidence                  7899999999999 676643  34 46899999999998743321              223489999999999


Q ss_pred             cccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137          239 LPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN  291 (312)
Q Consensus       239 ~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~  291 (312)
                      + .++.++.....+++|+.|+++++ +++.+|...... .+++.+....+-|.
T Consensus       201 N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l-~~L~~L~l~~N~~~  250 (317)
T 3o53_A          201 N-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHFDLRGNGFH  250 (317)
T ss_dssp             S-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-TTCCEEECTTCCCB
T ss_pred             C-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcC-CCCCEEEccCCCcc
Confidence            6 67777766778999999999996 788888654333 67777765444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=2e-16  Score=139.53  Aligned_cols=225  Identities=17%  Similarity=0.139  Sum_probs=133.7

Q ss_pred             cCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccc-cccCC-CCcccc---------CC
Q 045137            4 ISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFI-FYEAP-EDSVLF---------GG   72 (312)
Q Consensus         4 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~-~~~~~-~~~~~~---------~~   72 (312)
                      -++++++++|.++  .+++++|+|++| .++.+|+++|.++++|++|++++|.+.+ ++.+. ......         ..
T Consensus        16 C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           16 CQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             EESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred             ecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence            3556677777655  357778888877 7777777667778888888887777643 33221 111000         00


Q ss_pred             ccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCc-cccceEEeccCcCcce
Q 045137           73 GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDL-NHLNELWIDNGIELEE  151 (312)
Q Consensus        73 ~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~  151 (312)
                      .......+..+++|+.++++.+....++........  .+..+.+.+......... ..+..+ ..++.|+++++ .++.
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N-~i~~  168 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--QKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKN-GIQE  168 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS--SCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSS-CCCE
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccc--hhhhhhhccccccccccc-cchhhcchhhhhhccccc-cccC
Confidence            112234456677777777776655443322222211  455566655433333322 233333 35667777754 5665


Q ss_pred             eeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCC
Q 045137          152 LKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFE  229 (312)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (312)
                      ++...+          ...+|+.+++.++..++.+|  .++.+++|+.|++++|. ++.+              ....|.
T Consensus       169 i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~l--------------p~~~~~  223 (350)
T 4ay9_X          169 IHNSAF----------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSL--------------PSYGLE  223 (350)
T ss_dssp             ECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCC--------------CSSSCT
T ss_pred             CChhhc----------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCcc--------------Chhhhc
Confidence            554433          45678888887765777776  46778888888888775 3333              224567


Q ss_pred             CcCeeeccccccccccccCCcCCCCccEEEec
Q 045137          230 NLKSLDLSYLPELKSIFWKPLPFTHLKEMGVR  261 (312)
Q Consensus       230 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~  261 (312)
                      +|++|.+.++.+++.++ ....+++|+.+++.
T Consensus       224 ~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          224 NLKKLRARSTYNLKKLP-TLEKLVALMEASLT  254 (350)
T ss_dssp             TCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred             cchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence            77888777777777765 34567788887765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=1.5e-16  Score=137.90  Aligned_cols=187  Identities=20%  Similarity=0.242  Sum_probs=150.6

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|+++++.+..+| +++.+++|++|++++| .+..+++  +..+++|++|++++|.+..                 +..+
T Consensus        45 ~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~-----------------~~~~  103 (308)
T 1h6u_A           45 TLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKN-----------------VSAI  103 (308)
T ss_dssp             EEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSC-----------------CGGG
T ss_pred             EEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCC-----------------chhh
Confidence            3788999999997 7999999999999999 8888887  9999999999999998753                 3467


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ..+++|+.|+++.+....++.+..++    +|+.|+++++....   + ..+..+++|++|+++++ .+..+..  +.  
T Consensus       104 ~~l~~L~~L~l~~n~l~~~~~l~~l~----~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~l~~n-~l~~~~~--l~--  170 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITDVTPLAGLS----NLQVLYLDLNQITN---I-SPLAGLTNLQYLSIGNA-QVSDLTP--LA--  170 (308)
T ss_dssp             TTCTTCCEEECTTSCCCCCGGGTTCT----TCCEEECCSSCCCC---C-GGGGGCTTCCEEECCSS-CCCCCGG--GT--
T ss_pred             cCCCCCCEEECCCCCCCCchhhcCCC----CCCEEECCCCccCc---C-ccccCCCCccEEEccCC-cCCCChh--hc--
Confidence            88899999999887766666666777    89999998864322   2 23778899999999987 5554432  32  


Q ss_pred             cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLP  240 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  240 (312)
                             .+++|+.|++++| .+..++.+..+++|++|++++|......              ....+++|++|++++++
T Consensus       171 -------~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~--------------~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          171 -------NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQISDVS--------------PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -------TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSCCCBCG--------------GGTTCTTCCEEEEEEEE
T ss_pred             -------CCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCccCccc--------------cccCCCCCCEEEccCCe
Confidence                   7899999999999 7888888899999999999998643321              23678999999999864


Q ss_pred             cccc
Q 045137          241 ELKS  244 (312)
Q Consensus       241 ~l~~  244 (312)
                       +..
T Consensus       229 -i~~  231 (308)
T 1h6u_A          229 -ITN  231 (308)
T ss_dssp             -EEC
T ss_pred             -eec
Confidence             443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.68  E-value=1.5e-16  Score=154.33  Aligned_cols=252  Identities=15%  Similarity=0.017  Sum_probs=156.7

Q ss_pred             cccCCCCCc-cccHHhhCCCCCcEEecCCCCCcc-ccCchhhhccccccEEEEeccccc-ccccCCCCcc------ccC-
Q 045137            2 LDISHTTIR-ELPEELKLLVNLKCLNLRWTGALI-RIPRGLISKFSRLRVLRMLGTGGF-IFYEAPEDSV------LFG-   71 (312)
Q Consensus         2 L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~~-~~~~~~~~~~------~~~-   71 (312)
                      |++++|.+. .+|..++.+++|++|++++| .+. .+|.. ++++++|++|++.+|.+. .+|..+....      ... 
T Consensus       399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             EECCSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             EECCCCccccccCHHHhcCCCCCEEECcCC-cccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            566777766 56777777777777777777 444 34544 777777777777777665 2232222110      000 


Q ss_pred             -CccchhhhccCCCCceEEEEEecChh-h-HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcC
Q 045137           72 -GGEVLIQELLGLKYLEVLELTLGSYH-A-LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIE  148 (312)
Q Consensus        72 -~~~~~~~~l~~L~~L~~l~l~~~~~~-~-~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  148 (312)
                       .....+..+..+++|+.++++.+... . ...+..++    +|+.|+++++...  ..++..+..+++|+.|+++++.-
T Consensus       477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~----~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE----NLAILKLSNNSFS--GNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT----TCCEEECCSSCCE--EECCGGGGGCTTCCEEECCSSEE
T ss_pred             cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC----CCCEEECCCCccc--CcCCHHHcCCCCCCEEECCCCcc
Confidence             02234455677778888888766543 2 22455555    7888888876432  22335777888888888887632


Q ss_pred             cceeeeeccccc------------------------------------------------------------cccCCCCc
Q 045137          149 LEELKIDYTEIV------------------------------------------------------------RKRREPFV  168 (312)
Q Consensus       149 l~~l~~~~~~~~------------------------------------------------------------~~~~~~~~  168 (312)
                      ...++.......                                                            ........
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            222221111000                                                            00011114


Q ss_pred             ccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccccc
Q 045137          169 FHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFW  247 (312)
Q Consensus       169 ~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  247 (312)
                      +++|+.|++++|.....+| .++.+++|+.|++++|.....+ +           ...+.+++|+.|+++++.--..++.
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p-----------~~l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-P-----------DEVGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-C-----------GGGGGCTTCCEEECCSSCCEECCCG
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-C-----------hHHhCCCCCCEEECCCCcccCcCCh
Confidence            6789999999993333577 7888999999999988754443 2           2557789999999999754445666


Q ss_pred             CCcCCCCccEEEecCCCCCCCCCCCC
Q 045137          248 KPLPFTHLKEMGVRACDQLRKLPLDS  273 (312)
Q Consensus       248 ~~~~~~~L~~L~i~~c~~L~~l~~~~  273 (312)
                      ....++.|+.|+++++.--..+|...
T Consensus       699 ~l~~l~~L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          699 AMSALTMLTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             GGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred             HHhCCCCCCEEECcCCcccccCCCch
Confidence            67789999999999874333466543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=2.8e-16  Score=152.96  Aligned_cols=248  Identities=10%  Similarity=0.054  Sum_probs=130.6

Q ss_pred             cccCCCCCccccH--HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            2 LDISHTTIRELPE--ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         2 L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |+|++|.+..+|.  .|+++++|++|+|++| .+..+| . ++++++|++|++++|.+..+|                ..
T Consensus       553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~L~Ls~N~l~~lp----------------~~  613 (876)
T 4ecn_A          553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTDLKLDYNQIEEIP----------------ED  613 (876)
T ss_dssp             EECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESEEECCSSCCSCCC----------------TT
T ss_pred             EEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceEEECcCCccccch----------------HH
Confidence            4555555555555  5555555555555555 444555 2 555555555555555554333                23


Q ss_pred             ccCCCC-ceEEEEEecChhhHHHHh-hcc--------------------------c-ccccceEEEEeecCCCccccch-
Q 045137           80 LLGLKY-LEVLELTLGSYHALQILL-SSN--------------------------K-LKSCIRSLYLYLTGDKKSIIDA-  129 (312)
Q Consensus        80 l~~L~~-L~~l~l~~~~~~~~~~l~-~l~--------------------------~-l~~~L~~L~l~~~~~~~~~~~~-  129 (312)
                      +..+.+ |+.|+++.+....++... ...                          . -..+|+.|+++++...   .++ 
T Consensus       614 l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---~lp~  690 (876)
T 4ecn_A          614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ---KFPT  690 (876)
T ss_dssp             SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC---SCCH
T ss_pred             HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC---ccCH
Confidence            444444 555555544332222110 000                          0 0013445555443221   111 


Q ss_pred             hhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccC--CCCCCceEEEeecccc
Q 045137          130 TAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLA--FAPNLKSLSLFKCRAM  206 (312)
Q Consensus       130 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~--~l~~L~~L~l~~~~~~  206 (312)
                      ..+..+++|+.|+++++ .+..++......  ..+....+++|+.|++++| .+..+| .+.  .+++|+.|++++|...
T Consensus       691 ~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~--~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~  766 (876)
T 4ecn_A          691 ELFATGSPISTIILSNN-LMTSIPENSLKP--KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFS  766 (876)
T ss_dssp             HHHHTTCCCSEEECCSC-CCSCCCTTSSSC--TTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred             HHHccCCCCCEEECCCC-cCCccChHHhcc--ccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCC
Confidence            22335566677777654 444333222110  0000002348888888888 677777 554  7888888888887543


Q ss_pred             ceecccCccccCCCCCCCCccCCCcCeeeccccc------cccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccc
Q 045137          207 EEIISVGKIAENPEMMGHISPFENLKSLDLSYLP------ELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERK  280 (312)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l  280 (312)
                      . + +           .....+++|+.|++++++      -...++.....+++|+.|++++| ++..+|....   .++
T Consensus       767 ~-l-p-----------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~---~~L  829 (876)
T 4ecn_A          767 S-F-P-----------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT---PQL  829 (876)
T ss_dssp             S-C-C-----------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC---SSS
T ss_pred             c-c-c-----------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc---CCC
Confidence            3 2 1           244577888888887632      23334445667888999999887 4577887643   356


Q ss_pred             eEeeehHhhhhh
Q 045137          281 FVIRGEEDWWNR  292 (312)
Q Consensus       281 ~~i~~~~~~~~~  292 (312)
                      +.+....|-+..
T Consensus       830 ~~LdLs~N~l~~  841 (876)
T 4ecn_A          830 YILDIADNPNIS  841 (876)
T ss_dssp             CEEECCSCTTCE
T ss_pred             CEEECCCCCCCc
Confidence            666544444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=1.7e-16  Score=148.69  Aligned_cols=248  Identities=16%  Similarity=0.135  Sum_probs=150.6

Q ss_pred             cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCC-c---cccCCccchhhhccCCCCc
Q 045137           11 ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPED-S---VLFGGGEVLIQELLGLKYL   86 (312)
Q Consensus        11 ~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~L~~L   86 (312)
                      .+|..++.+++|++|++++| .+..+|.. +..+ +|++|++.+|.+..+|..... +   ...+...........+++|
T Consensus       273 ~~~~~~~~l~~L~~L~l~~~-~l~~l~~~-~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L  349 (570)
T 2z63_A          273 DIIDLFNCLTNVSSFSLVSV-TIERVKDF-SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL  349 (570)
T ss_dssp             CSTTTTGGGTTCSEEEEESC-EECSCCBC-CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred             hchhhhcCcCcccEEEecCc-cchhhhhh-hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCC
Confidence            45677788888888888888 67778776 6667 888888888877654431100 0   0000000000011455666


Q ss_pred             eEEEEEecChhh----HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee-ecccccc
Q 045137           87 EVLELTLGSYHA----LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI-DYTEIVR  161 (312)
Q Consensus        87 ~~l~l~~~~~~~----~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~  161 (312)
                      +.++++.+....    ...+..++    +|+.|+++++...   .....+..+++|++|+++++ .+..... ..+.   
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~----~L~~L~l~~n~l~---~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~---  418 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTT----SLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFL---  418 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCS----CCCEEECCSCSEE---EEEEEEETCTTCCEEECTTS-EEESCTTSCTTT---
T ss_pred             CEEeCcCCccCccccccccccccC----ccCEEECCCCccc---cccccccccCCCCEEEccCC-ccccccchhhhh---
Confidence            666666544321    12344445    6667766654321   11123566677777777764 2222211 1122   


Q ss_pred             ccCCCCcccccceEeecCCCCccc-CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKD-ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYL  239 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (312)
                            .+++|++|++++| .+.. .+ .+..+++|++|++.+|......++           .....+++|++|+++++
T Consensus       419 ------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-----------~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          419 ------SLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----------DIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             ------TCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-----------SCCTTCTTCCEEECTTS
T ss_pred             ------cCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccch-----------hhhhcccCCCEEECCCC
Confidence                  6788888888888 4444 44 677788888888888864322212           24567899999999997


Q ss_pred             cccccc-ccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137          240 PELKSI-FWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR  292 (312)
Q Consensus       240 ~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~  292 (312)
                       .++.+ +.....+++|+.|++++| +++.++........+++.+....+.|.+
T Consensus       481 -~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          481 -QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence             46555 344667899999999997 7888876655555777777655544443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.67  E-value=2.4e-16  Score=152.92  Aligned_cols=172  Identities=19%  Similarity=0.109  Sum_probs=122.0

Q ss_pred             CcccCCCCCc-cccHHhhC--CCCCcEEecCCCCCcc-ccCchhhhccccccEEEEecccccccccCCCCccccCCccch
Q 045137            1 LLDISHTTIR-ELPEELKL--LVNLKCLNLRWTGALI-RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVL   76 (312)
Q Consensus         1 ~L~Ls~~~i~-~lp~~i~~--L~~L~~L~L~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~   76 (312)
                      +|++++|.+. .+|..+..  +++|++|++++| .+. .+|.. ++++++|++|++++|.+..               ..
T Consensus       372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~---------------~~  434 (768)
T 3rgz_A          372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFNYLSG---------------TI  434 (768)
T ss_dssp             EEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSSEEES---------------CC
T ss_pred             EEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCCcccC---------------cc
Confidence            3789999886 57777777  899999999999 565 56765 9999999999999998853               44


Q ss_pred             hhhccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee
Q 045137           77 IQELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI  154 (312)
Q Consensus        77 ~~~l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~  154 (312)
                      +..+..+++|+.++++.+...  ....+..++    +|+.|++.++.....  .+..+..+++|++|+++++. +.....
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~----~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~N~-l~~~~p  507 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK----TLETLILDFNDLTGE--IPSGLSNCTNLNWISLSNNR-LTGEIP  507 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT----TCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSC-CCSCCC
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCC----CceEEEecCCcccCc--CCHHHhcCCCCCEEEccCCc-cCCcCC
Confidence            556777788888888766543  222445555    788888887643222  23567778888888888763 432222


Q ss_pred             eccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccc
Q 045137          155 DYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       155 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~  205 (312)
                      .++.         .+++|++|++++|.....+| .++.+++|+.|++++|..
T Consensus       508 ~~~~---------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          508 KWIG---------RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             GGGG---------GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             hHHh---------cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            3333         67888888888883333466 677788888888877754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=2.9e-16  Score=148.67  Aligned_cols=116  Identities=17%  Similarity=0.137  Sum_probs=84.0

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCC-CCccc------cCC
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAP-EDSVL------FGG   72 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~~------~~~   72 (312)
                      +||||+|.|+.+| .+|+++++|++|+|++| .+..+|+++|.++++|++|++++|.+..+|.+. .....      ..-
T Consensus        56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred             EEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence            4899999999997 67999999999999999 899998888999999999999999988876542 22211      111


Q ss_pred             --ccchhhhccCCCCceEEEEEecChhhH---HHHhhcccccccceEEEEeecC
Q 045137           73 --GEVLIQELLGLKYLEVLELTLGSYHAL---QILLSSNKLKSCIRSLYLYLTG  121 (312)
Q Consensus        73 --~~~~~~~l~~L~~L~~l~l~~~~~~~~---~~l~~l~~l~~~L~~L~l~~~~  121 (312)
                        .......++.+++|+.|+++.+....+   ..+..++    .|+.|+++++.
T Consensus       135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~----~L~~L~L~~N~  184 (635)
T 4g8a_A          135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT----NLEHLDLSSNK  184 (635)
T ss_dssp             CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT----TCCEEECCSSC
T ss_pred             cCCCCChhhhhcCcccCeeccccCccccCCCchhhccch----hhhhhcccCcc
Confidence              111122366778888888876654322   2344555    78888887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.67  E-value=1.5e-16  Score=152.41  Aligned_cols=257  Identities=15%  Similarity=0.096  Sum_probs=127.4

Q ss_pred             HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc--ccccCCCC---------ccccC--Cccchhhhcc
Q 045137           15 ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF--IFYEAPED---------SVLFG--GGEVLIQELL   81 (312)
Q Consensus        15 ~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~--~~~~~~~~---------~~~~~--~~~~~~~~l~   81 (312)
                      .|+.+++|++|++++| .+..+++..+.++++|++|++++|.+.  .++.....         +...+  ........+.
T Consensus       324 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~  402 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS  402 (680)
T ss_dssp             TTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred             hcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence            6778888888888888 677776666788888888888776532  22111100         00010  1122234566


Q ss_pred             CCCCceEEEEEecChhh-H--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCccee--eeec
Q 045137           82 GLKYLEVLELTLGSYHA-L--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEEL--KIDY  156 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~-~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l--~~~~  156 (312)
                      .+.+|+.++++.+.... +  ..+..++    +|+.|+++++... .. ....+..+++|++|+++++. +..+  ....
T Consensus       403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~----~L~~L~Ls~n~l~-~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~  475 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEIGQELTGQEWRGLE----NIFEIYLSYNKYL-QL-TRNSFALVPSLQRLMLRRVA-LKNVDSSPSP  475 (680)
T ss_dssp             TCTTCCEEECCSSCCEEECCSGGGTTCT----TCCEEECCSCSEE-EC-CTTTTTTCTTCCEEECTTSC-CBCTTCSSCT
T ss_pred             CCCCCCEEeCCCCcCccccCcccccCcc----cccEEecCCCCcc-ee-ChhhhhcCcccccchhcccc-ccccccCCcc
Confidence            77788888877654421 1  2344445    6777777665311 11 11344455556666655432 2111  0011


Q ss_pred             cccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCc-------c------------
Q 045137          157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGK-------I------------  215 (312)
Q Consensus       157 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~-------~------------  215 (312)
                      +.         .+++|+.|++++| .++.++  .++.+++|++|++++|...... ....       .            
T Consensus       476 ~~---------~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~~~~~l~~L~~L~L~  544 (680)
T 1ziw_A          476 FQ---------PLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLW-KHANPGGPIYFLKGLSHLHILNLE  544 (680)
T ss_dssp             TT---------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGG-STTSTTSCCCTTTTCTTCCEEECC
T ss_pred             cc---------cCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccc-hhhccCCcchhhcCCCCCCEEECC
Confidence            11         4455555555554 344433  2444555555555544321110 0000       0            


Q ss_pred             -ccCCCCC-CCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCCCCCCCCCcc-ccccceEeeehHhhhh
Q 045137          216 -AENPEMM-GHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNS-AKERKFVIRGEEDWWN  291 (312)
Q Consensus       216 -~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~-~~~~l~~i~~~~~~~~  291 (312)
                       ..+..+. .....+++|+.|+++++ .++.++.. ...+++|+.|+++++ +++.++..... ...+++.+....|.|.
T Consensus       545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          545 SNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence             0000000 12345566777777653 45555544 245677777777775 56665543332 2355666665555554


Q ss_pred             h
Q 045137          292 R  292 (312)
Q Consensus       292 ~  292 (312)
                      +
T Consensus       623 c  623 (680)
T 1ziw_A          623 C  623 (680)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=1.5e-16  Score=135.20  Aligned_cols=79  Identities=23%  Similarity=0.294  Sum_probs=64.9

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.+..+| ..|+.+++|++|++++| .+..+|.+++.++++|++|++++|.+..++               ...
T Consensus        41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~  104 (270)
T 2o6q_A           41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALP---------------IGV  104 (270)
T ss_dssp             EEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCC---------------TTT
T ss_pred             EEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCC---------------HhH
Confidence            3789999999887 57999999999999999 899999887899999999999999886432               234


Q ss_pred             ccCCCCceEEEEEecC
Q 045137           80 LLGLKYLEVLELTLGS   95 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~   95 (312)
                      +..+.+|+.|+++.+.
T Consensus       105 ~~~l~~L~~L~l~~n~  120 (270)
T 2o6q_A          105 FDQLVNLAELRLDRNQ  120 (270)
T ss_dssp             TTTCSSCCEEECCSSC
T ss_pred             cccccCCCEEECCCCc
Confidence            5666777777776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.66  E-value=8.9e-16  Score=146.93  Aligned_cols=187  Identities=19%  Similarity=0.169  Sum_probs=104.6

Q ss_pred             CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccccc-CCCCccc------cC-
Q 045137            1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYE-APEDSVL------FG-   71 (312)
Q Consensus         1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~~~------~~-   71 (312)
                      +|+|++|.+..+ |..|+++++|++|++++| .+..+|+..++++++|++|++++|.+..++. .+.....      .. 
T Consensus        53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             EEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence            367888888766 577888888888888888 7778887668888888888888887765542 2222110      00 


Q ss_pred             -CccchhhhccCCCCceEEEEEecChhhH--HHHh--hcccccccceEEEEeecCCCccccchhhhcCccc---------
Q 045137           72 -GGEVLIQELLGLKYLEVLELTLGSYHAL--QILL--SSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNH---------  137 (312)
Q Consensus        72 -~~~~~~~~l~~L~~L~~l~l~~~~~~~~--~~l~--~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~---------  137 (312)
                       .....+..+..+++|+.++++.+.....  ..+.  ..+    +|+.|+++++......  +..+..+.+         
T Consensus       132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~----~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~~  205 (680)
T 1ziw_A          132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS----SLKKLELSSNQIKEFS--PGCFHAIGRLFGLFLNNV  205 (680)
T ss_dssp             CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC----EESEEECTTCCCCCBC--TTGGGGSSEECEEECTTC
T ss_pred             cccccCchhhcccccCCEEEccCCcccccCHHHhhccccc----cccEEECCCCcccccC--hhhhhhhhhhhhhhcccc
Confidence             0112234455677777777765543221  1221  223    5777777654321111  122333333         


Q ss_pred             ------------------cceEEeccCcCcceeeeeccccccccCCCCcc--cccceEeecCCCCcccCC--ccCCCCCC
Q 045137          138 ------------------LNELWIDNGIELEELKIDYTEIVRKRREPFVF--HSLHLVTIYSCHKLKDST--FLAFAPNL  195 (312)
Q Consensus       138 ------------------L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~--~l~~l~~L  195 (312)
                                        |++|+++++ .+.......+.         .+  ++|+.|++++| .+..++  .++.+++|
T Consensus       206 ~l~~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~~---------~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  274 (680)
T 1ziw_A          206 QLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFL---------GLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQL  274 (680)
T ss_dssp             CCHHHHHHHHHHHHTTSCCCEEECTTS-CCCEECTTTTG---------GGGGSCCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred             ccChhhHHHHHHHhhhccccEEEccCC-cccccChhHhh---------ccCcCCCCEEECCCC-CcCccCcccccCcccc
Confidence                              344444433 22222111111         23  34888888877 555543  56777888


Q ss_pred             ceEEEeeccc
Q 045137          196 KSLSLFKCRA  205 (312)
Q Consensus       196 ~~L~l~~~~~  205 (312)
                      ++|++++|..
T Consensus       275 ~~L~L~~n~l  284 (680)
T 1ziw_A          275 EYFFLEYNNI  284 (680)
T ss_dssp             CEEECCSCCB
T ss_pred             cEeeCCCCcc
Confidence            8888877653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=3.1e-17  Score=143.65  Aligned_cols=172  Identities=17%  Similarity=0.135  Sum_probs=75.4

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccc--cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIR--IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      ++++|.+...+..+..+++|++|++++| .+..  ++. .+..+++|++|++++|.+..               ..+..+
T Consensus        76 ~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~---------------~~~~~l  138 (336)
T 2ast_B           76 RCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHG-ILSQCSKLQNLSLEGLRLSD---------------PIVNTL  138 (336)
T ss_dssp             ECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHH-HHTTBCCCSEEECTTCBCCH---------------HHHHHH
T ss_pred             EcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHH-HHhhCCCCCEEeCcCcccCH---------------HHHHHH
Confidence            3444444433333444555555555555 3332  332 24555555555555554421               333444


Q ss_pred             cCCCCceEEEEEec-Chh--hHHH-HhhcccccccceEEEEeecCCCccccchhhhcCcc-ccceEEeccCc-Ccceeee
Q 045137           81 LGLKYLEVLELTLG-SYH--ALQI-LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLN-HLNELWIDNGI-ELEELKI  154 (312)
Q Consensus        81 ~~L~~L~~l~l~~~-~~~--~~~~-l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~-~l~~l~~  154 (312)
                      ..+++|+.|+++.+ ...  .++. +..++    +|+.|+++++.......+...+..++ +|++|++++|. .+....+
T Consensus       139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~----~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l  214 (336)
T 2ast_B          139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCS----RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL  214 (336)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCT----TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred             hcCCCCCEEECCCCCCCCHHHHHHHHhcCC----CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence            44555555555443 221  1221 33333    55555555542222222223444555 55555555542 1211000


Q ss_pred             -eccccccccCCCCcccccceEeecCCCCccc--CCccCCCCCCceEEEeecc
Q 045137          155 -DYTEIVRKRREPFVFHSLHLVTIYSCHKLKD--STFLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       155 -~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~  204 (312)
                       ....         .+++|++|++++|..+++  ++.++.+++|++|++++|.
T Consensus       215 ~~~~~---------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          215 STLVR---------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHH---------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             HHHHh---------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence             1111         455555555555532332  2244555555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.66  E-value=2.3e-16  Score=144.02  Aligned_cols=171  Identities=15%  Similarity=0.066  Sum_probs=94.4

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcc------ccCCcc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSV------LFGGGE   74 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~------~~~~~~   74 (312)
                      +|+|++|.++.+|  ++.+++|++|++++| .+..++   ++++++|++|++++|.+..++  +....      ...-..
T Consensus        68 ~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l  139 (457)
T 3bz5_A           68 KLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTL  139 (457)
T ss_dssp             EEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCC
T ss_pred             EEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcc
Confidence            4788888888886  888899999999998 677774   778888999999888776432  11100      000000


Q ss_pred             chhhhccCCCCceEEEEEecC-hhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceee
Q 045137           75 VLIQELLGLKYLEVLELTLGS-YHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK  153 (312)
Q Consensus        75 ~~~~~l~~L~~L~~l~l~~~~-~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~  153 (312)
                      ..+ .+..+++|+.++++.+. ...+ .+..++    +|+.|+++++.-..   + + +..+++|+.|+++++ .+..+.
T Consensus       140 ~~l-~l~~l~~L~~L~l~~n~~~~~~-~~~~l~----~L~~L~ls~n~l~~---l-~-l~~l~~L~~L~l~~N-~l~~~~  207 (457)
T 3bz5_A          140 TEI-DVSHNTQLTELDCHLNKKITKL-DVTPQT----QLTTLDCSFNKITE---L-D-VSQNKLLNRLNCDTN-NITKLD  207 (457)
T ss_dssp             SCC-CCTTCTTCCEEECTTCSCCCCC-CCTTCT----TCCEEECCSSCCCC---C-C-CTTCTTCCEEECCSS-CCSCCC
T ss_pred             cee-ccccCCcCCEEECCCCCccccc-ccccCC----cCCEEECCCCccce---e-c-cccCCCCCEEECcCC-cCCeec
Confidence            001 13334444444443331 1111 122222    45555554432111   1 1 344455555555543 333321


Q ss_pred             eeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccc
Q 045137          154 IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~  205 (312)
                         +.         .+++|+.|++++| .+..+| ++.+++|++|++++|..
T Consensus       208 ---l~---------~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          208 ---LN---------QNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             ---CT---------TCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSCC
T ss_pred             ---cc---------cCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCcC
Confidence               11         5677777777777 566665 66677777777776653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=3.5e-16  Score=146.57  Aligned_cols=131  Identities=19%  Similarity=0.222  Sum_probs=96.2

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.++.++ ..|+.+++|++|++++| .+..+++++++++++|++|++++|.+..               .....
T Consensus        32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~   95 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS---------------LALGA   95 (570)
T ss_dssp             EEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCE---------------ECTTT
T ss_pred             EEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCc---------------cCHhh
Confidence            3789999998876 68999999999999999 7888887778999999999999998864               23355


Q ss_pred             ccCCCCceEEEEEecChhhHHH--HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceee
Q 045137           80 LLGLKYLEVLELTLGSYHALQI--LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK  153 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~~--l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~  153 (312)
                      +..+++|+.|+++.+....++.  +.+++    +|+.|+++++.. ....++..+..+++|++|+++++ .+..+.
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~----~L~~L~L~~n~l-~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~  165 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLK----TLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSN-KIQSIY  165 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCT----TCCEEECCSSCC-CCCCCCGGGGGCTTCCEEECTTS-CCCEEC
T ss_pred             hcCccccccccccccccccCCCccccccc----cccEEecCCCcc-ceecChhhhcccCCCCEEeCcCC-ccceec
Confidence            6777888888887665443332  44555    788888877532 22233456777888888888865 444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.66  E-value=1.7e-15  Score=148.50  Aligned_cols=94  Identities=16%  Similarity=0.116  Sum_probs=57.7

Q ss_pred             cccCCC-CCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccc-cccC--CCCccc------c
Q 045137            2 LDISHT-TIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFI-FYEA--PEDSVL------F   70 (312)
Q Consensus         2 L~Ls~~-~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~-~~~~--~~~~~~------~   70 (312)
                      |+|++| .+..+ |..|+++++|++|+|++| .+..+++..++++++|++|++++|.+.. ++.+  +.....      .
T Consensus        53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls  131 (844)
T 3j0a_A           53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS  131 (844)
T ss_dssp             EEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE
T ss_pred             EeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC
Confidence            567777 34455 567777777777777777 6666644447777777777777776653 2222  222110      1


Q ss_pred             CC---ccchhhhccCCCCceEEEEEecCh
Q 045137           71 GG---GEVLIQELLGLKYLEVLELTLGSY   96 (312)
Q Consensus        71 ~~---~~~~~~~l~~L~~L~~l~l~~~~~   96 (312)
                      .-   .......+..+++|+.|+++.+..
T Consensus       132 ~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             SCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCcccccccchhHhhCCCCCEEECCCCcC
Confidence            10   111224678899999999997654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.65  E-value=9.5e-15  Score=136.83  Aligned_cols=114  Identities=19%  Similarity=0.175  Sum_probs=80.1

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcc------ccCCc
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSV------LFGGG   73 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~------~~~~~   73 (312)
                      +|+|++|.++.+| ..|+.+++|++|++++| .+..++++.+.++++|++|++++|.+..+|..  ...      ..+-.
T Consensus        56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~  132 (562)
T 3a79_B           56 ALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND  132 (562)
T ss_dssp             EEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC
T ss_pred             EEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC
Confidence            3788999998886 78999999999999999 88888666689999999999999988877754  111      11111


Q ss_pred             ---cchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeec
Q 045137           74 ---EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLT  120 (312)
Q Consensus        74 ---~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~  120 (312)
                         ...+..+..+++|+.|+++.+.... ..+..++.+  +|+.|++.++
T Consensus       133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L--~L~~L~L~~n  179 (562)
T 3a79_B          133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL--HLSCILLDLV  179 (562)
T ss_dssp             CSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS--CEEEEEEEES
T ss_pred             ccccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc--eeeEEEeecc
Confidence               1223567788888888888765533 233444422  2377777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=3.5e-16  Score=143.99  Aligned_cols=225  Identities=16%  Similarity=0.101  Sum_probs=164.8

Q ss_pred             CccccHHhhCCC----CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCC
Q 045137            9 IRELPEELKLLV----NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLK   84 (312)
Q Consensus         9 i~~lp~~i~~L~----~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~   84 (312)
                      ...+|..+..+.    +|++|+|++| .+..+++..++.+++|++|++++|.+...                 ..+..++
T Consensus        19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~~l~~l~   80 (487)
T 3oja_A           19 DSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYET-----------------LDLESLS   80 (487)
T ss_dssp             TTTHHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEE-----------------EECTTCT
T ss_pred             hhhhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCC-----------------cccccCC
Confidence            346777777766    8999999999 88888776699999999999999988531                 1277889


Q ss_pred             CceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccC
Q 045137           85 YLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRR  164 (312)
Q Consensus        85 ~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~  164 (312)
                      +|+.|+++.+....++   ..+    +|+.|+++++......     ...+++|++|+++++ .+..+....+.      
T Consensus        81 ~L~~L~Ls~N~l~~l~---~~~----~L~~L~L~~N~l~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~------  141 (487)
T 3oja_A           81 TLRTLDLNNNYVQELL---VGP----SIETLHAANNNISRVS-----CSRGQGKKNIYLANN-KITMLRDLDEG------  141 (487)
T ss_dssp             TCCEEECCSSEEEEEE---ECT----TCCEEECCSSCCCCEE-----ECCCSSCEEEECCSS-CCCSGGGBCGG------
T ss_pred             CCCEEEecCCcCCCCC---CCC----CcCEEECcCCcCCCCC-----ccccCCCCEEECCCC-CCCCCCchhhc------
Confidence            9999999877554322   223    7999999886433221     124578999999976 55554333333      


Q ss_pred             CCCcccccceEeecCCCCcccC-C-ccC-CCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137          165 EPFVFHSLHLVTIYSCHKLKDS-T-FLA-FAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE  241 (312)
Q Consensus       165 ~~~~~~~L~~L~l~~~~~l~~l-~-~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  241 (312)
                         .+++|+.|++++| .+..+ | .+. .+++|++|++++|......              ....+++|++|+++++ .
T Consensus       142 ---~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--------------~~~~l~~L~~L~Ls~N-~  202 (487)
T 3oja_A          142 ---CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------------GQVVFAKLKTLDLSSN-K  202 (487)
T ss_dssp             ---GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------------CCCCCTTCCEEECCSS-C
T ss_pred             ---CCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCcccccc--------------ccccCCCCCEEECCCC-C
Confidence               7899999999999 66663 3 454 6999999999998743332              2235899999999996 5


Q ss_pred             ccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137          242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN  291 (312)
Q Consensus       242 l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~  291 (312)
                      ++.++.....+++|+.|+++++ +++.+|...... ..+..+....+.|.
T Consensus       203 l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l-~~L~~L~l~~N~l~  250 (487)
T 3oja_A          203 LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-TTCCEEECTTCCBC
T ss_pred             CCCCCHhHcCCCCccEEEecCC-cCcccchhhccC-CCCCEEEcCCCCCc
Confidence            7777777778999999999995 688888754333 56666654444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=2.8e-16  Score=146.62  Aligned_cols=168  Identities=20%  Similarity=0.223  Sum_probs=113.2

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      |.+++.++.+|.++.  ++|++|++++| .+..+++..+.++++|++|++++|.+..+               ....+..
T Consensus        11 ~~~~~~l~~ip~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~---------------~~~~~~~   72 (549)
T 2z81_A           11 DGRSRSFTSIPSGLT--AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTI---------------EGDAFYS   72 (549)
T ss_dssp             ECTTSCCSSCCSCCC--TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEE---------------CTTTTTT
T ss_pred             ECCCCccccccccCC--CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCcc---------------Chhhccc
Confidence            567889999997664  89999999999 78888665699999999999999988653               3345667


Q ss_pred             CCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           83 LKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      +++|++|+++.+.....  ..+..++    +|+.|+++++.-. ....+..+..+++|++|+++++.....++...+.  
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~----~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--  145 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLS----SLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA--  145 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCT----TCCEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT--
T ss_pred             cccCCEEECCCCccCccCHHHhccCC----CCcEEECCCCccc-ccchhhhhhccCCccEEECCCCccccccCHhhhh--
Confidence            77888888876644322  2355666    7788887765322 2222245677778888888776435544433332  


Q ss_pred             cccCCCCcccccceEeecCCCCccc-CC-ccCCCCCCceEEEeec
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKD-ST-FLAFAPNLKSLSLFKC  203 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~-l~-~l~~l~~L~~L~l~~~  203 (312)
                             .+++|++|++++| .+.. .| .++.+++|++|+++++
T Consensus       146 -------~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          146 -------GLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             -------TCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECS
T ss_pred             -------cccccCeeeccCC-cccccChhhhhccccCceEecccC
Confidence                   5677777777776 4443 33 4555555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.64  E-value=2.6e-15  Score=132.41  Aligned_cols=220  Identities=16%  Similarity=0.123  Sum_probs=126.8

Q ss_pred             cEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChh-hHH-
Q 045137           23 KCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH-ALQ-  100 (312)
Q Consensus        23 ~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~-~~~-  100 (312)
                      ++++-+++ .++.+|.+ +  .+++++|++++|.+..+|               ...+..+++|+.|+++.+... .++ 
T Consensus        12 ~~v~C~~~-~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~---------------~~~f~~l~~L~~L~Ls~N~i~~~i~~   72 (350)
T 4ay9_X           12 RVFLCQES-KVTEIPSD-L--PRNAIELRFVLTKLRVIQ---------------KGAFSGFGDLEKIEISQNDVLEVIEA   72 (350)
T ss_dssp             TEEEEEST-TCCSCCTT-C--CTTCSEEEEESCCCSEEC---------------TTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred             CEEEecCC-CCCccCcC-c--CCCCCEEEccCCcCCCcC---------------HHHHcCCCCCCEEECcCCCCCCccCh
Confidence            56777777 88899987 4  368999999999987543               234677888899999877542 122 


Q ss_pred             -HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc---------------ccccC
Q 045137          101 -ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI---------------VRKRR  164 (312)
Q Consensus       101 -~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~---------------~~~~~  164 (312)
                       .+.+++    .++.+.+........... ..+..+++|++|+++++ .+..+.......               .....
T Consensus        73 ~~f~~L~----~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~  146 (350)
T 4ay9_X           73 DVFSNLP----KLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER  146 (350)
T ss_dssp             TSBCSCT----TCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred             hHhhcch----hhhhhhcccCCcccccCc-hhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccc
Confidence             233444    444444444333333322 46677888888888765 343332221110               00000


Q ss_pred             C--CCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137          165 E--PFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE  241 (312)
Q Consensus       165 ~--~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  241 (312)
                      .  ......++.|++++| .++.++ .....++|+.|.+.++..++.+..           .....+++|++|+++++ .
T Consensus       147 ~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~-----------~~f~~l~~L~~LdLs~N-~  213 (350)
T 4ay9_X          147 NSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPN-----------DVFHGASGPVILDISRT-R  213 (350)
T ss_dssp             TSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCT-----------TTTTTEECCSEEECTTS-C
T ss_pred             cchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCH-----------HHhccCcccchhhcCCC-C
Confidence            0  001123444555544 444443 222334455555544333333211           12356788999999986 6


Q ss_pred             ccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEee
Q 045137          242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIR  284 (312)
Q Consensus       242 l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~  284 (312)
                      ++.++.  ..+..|++|.+.++.+++.+|.-.  ...+++...
T Consensus       214 l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~--~l~~L~~l~  252 (350)
T 4ay9_X          214 IHSLPS--YGLENLKKLRARSTYNLKKLPTLE--KLVALMEAS  252 (350)
T ss_dssp             CCCCCS--SSCTTCCEEECTTCTTCCCCCCTT--TCCSCCEEE
T ss_pred             cCccCh--hhhccchHhhhccCCCcCcCCCch--hCcChhhCc
Confidence            777754  458899999999999999999522  224555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.64  E-value=9.7e-17  Score=140.51  Aligned_cols=220  Identities=15%  Similarity=0.092  Sum_probs=162.6

Q ss_pred             cccCCCCCccccHHhhCC--CCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            2 LDISHTTIRELPEELKLL--VNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L--~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      ++++++.+.  |..++.+  +++++|++++| .+...++. +..+++|++|++++|.+..              ......
T Consensus        52 l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~--------------~~~~~~  113 (336)
T 2ast_B           52 LDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEV--------------STLHGI  113 (336)
T ss_dssp             EECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECH--------------HHHHHH
T ss_pred             eccccccCC--HHHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCH--------------HHHHHH
Confidence            577887776  6778888  99999999999 77776665 7789999999999998642              124566


Q ss_pred             ccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee-ec
Q 045137           80 LLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI-DY  156 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~  156 (312)
                      +..+++|+.|+++.+...  ....+..++    +|+.|+++++...........+..+++|++|++++|..+..... ..
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~----~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNS----NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCT----TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCC----CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            788899999999866543  344566666    89999999875444434445678899999999998855554221 22


Q ss_pred             cccccccCCCCccc-ccceEeecCCC-Ccc--cCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCc
Q 045137          157 TEIVRKRREPFVFH-SLHLVTIYSCH-KLK--DST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL  231 (312)
Q Consensus       157 ~~~~~~~~~~~~~~-~L~~L~l~~~~-~l~--~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  231 (312)
                      ..         .++ +|++|++++|. .+.  .++ .+..+++|++|++++|..+++...           .....+++|
T Consensus       190 ~~---------~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-----------~~l~~l~~L  249 (336)
T 2ast_B          190 VA---------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFQLNYL  249 (336)
T ss_dssp             HH---------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-----------GGGGGCTTC
T ss_pred             HH---------hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-----------HHHhCCCCC
Confidence            22         678 99999999995 343  244 566799999999999985443211           134567999


Q ss_pred             Ceeecccccccccccc-CCcCCCCccEEEecCC
Q 045137          232 KSLDLSYLPELKSIFW-KPLPFTHLKEMGVRAC  263 (312)
Q Consensus       232 ~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c  263 (312)
                      ++|++++|..+..... ....+++|+.|++++|
T Consensus       250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            9999999875544332 2456999999999998

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=2e-16  Score=137.32  Aligned_cols=241  Identities=17%  Similarity=0.114  Sum_probs=137.8

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccc--cCchhhh-------ccccccEEEEecccccccccCCCCccccCC
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIR--IPRGLIS-------KFSRLRVLRMLGTGGFIFYEAPEDSVLFGG   72 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~--lp~~~i~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   72 (312)
                      |++++|.+ .+|.++...  |++|++++| .+..  +|.. +.       ++++|++|++++|.+..             
T Consensus        48 l~l~~n~l-~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~-------------  109 (312)
T 1wwl_A           48 LLKRVDTE-ADLGQFTDI--IKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTG-------------  109 (312)
T ss_dssp             HHHHCCTT-CCCHHHHHH--HHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBS-------------
T ss_pred             Eeeccccc-ccHHHHHHH--Hhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccc-------------
Confidence            45667777 677666654  777777777 5533  4443 33       57778888888777642             


Q ss_pred             ccchhhhc--cCCCCceEEEEEecChhhHH-HHhhccc-ccccceEEEEeecCCCccccchhhhcCccccceEEeccCcC
Q 045137           73 GEVLIQEL--LGLKYLEVLELTLGSYHALQ-ILLSSNK-LKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIE  148 (312)
Q Consensus        73 ~~~~~~~l--~~L~~L~~l~l~~~~~~~~~-~l~~l~~-l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  148 (312)
                        ..+..+  ..+++|+.|+++.+.....+ .+..+.. ...+|+.|+++++.... .. +..+..+++|++|+++++.-
T Consensus       110 --~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~-~~~~~~l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          110 --TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FS-CEQVRVFPALSTLDLSDNPE  185 (312)
T ss_dssp             --CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CC-TTTCCCCSSCCEEECCSCTT
T ss_pred             --hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-ch-HHHhccCCCCCEEECCCCCc
Confidence              222222  66777777777766543221 1222200 00167788887764322 11 14667778888888886632


Q ss_pred             cceeee--ec-cccccccCCCCcccccceEeecCCCCcccCC-----ccCCCCCCceEEEeeccccceecccCccccCCC
Q 045137          149 LEELKI--DY-TEIVRKRREPFVFHSLHLVTIYSCHKLKDST-----FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPE  220 (312)
Q Consensus       149 l~~l~~--~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  220 (312)
                      ....+.  .. ..         .+++|++|++++| .+..++     .+..+++|++|++++|...... +.        
T Consensus       186 ~~~~~~~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~--------  246 (312)
T 1wwl_A          186 LGERGLISALCPL---------KFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-GA--------  246 (312)
T ss_dssp             CHHHHHHHHSCTT---------SCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-CC--------
T ss_pred             CcchHHHHHHHhc---------cCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-ch--------
Confidence            221110  11 01         6778888888887 565332     2345678888888777543322 10        


Q ss_pred             CCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137          221 MMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN  291 (312)
Q Consensus       221 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~  291 (312)
                        .....+++|++|+++++ .++.++....  ++|+.|+++++ +++.+|.  .....+++.+....|.+.
T Consensus       247 --~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~--~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          247 --PSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS--PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             --SCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred             --hhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh--HhhCCCCCEEeccCCCCC
Confidence              12234577888888775 4655544332  67888888874 6777755  223366666665544443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.64  E-value=3.9e-16  Score=132.82  Aligned_cols=215  Identities=15%  Similarity=0.147  Sum_probs=147.0

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      +++.+.+..+ .....+++|+.|++++| .+..++.  ++.+++|++|++++|.+..                 +..+..
T Consensus        25 ~l~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~~   83 (272)
T 3rfs_A           25 NLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGNKLHD-----------------ISALKE   83 (272)
T ss_dssp             HHTCSCTTSE-ECHHHHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTSCCCC-----------------CGGGTT
T ss_pred             HhcCcccccc-cccccccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCCCCCC-----------------chhhcC
Confidence            3455555544 24667888899999888 7777765  8888999999998887742                 346777


Q ss_pred             CCCceEEEEEecChhhHHH--HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           83 LKYLEVLELTLGSYHALQI--LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~~~--l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      +++|+.|+++.+....+..  +..++    +|+.|++.++.-. ... ...+..+++|++|+++++ .+..+....+.  
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~----~L~~L~L~~n~l~-~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~--  154 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLT----NLKELVLVENQLQ-SLP-DGVFDKLTNLTYLNLAHN-QLQSLPKGVFD--  154 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCT----TCCEEECTTSCCC-CCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTT--
T ss_pred             CCCCCEEECCCCccCccChhHhcCCc----CCCEEECCCCcCC-ccC-HHHhccCCCCCEEECCCC-ccCccCHHHhc--
Confidence            8888888887665543332  44555    7888888876432 111 135778889999999876 56655544333  


Q ss_pred             cccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY  238 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (312)
                             .+++|+.|++++| .+..++  .++.+++|++|++++|.... ..+           .....+++|++|++++
T Consensus       155 -------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-----------~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          155 -------KLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD-----------GVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             -------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-CCT-----------TTTTTCTTCCEEECCS
T ss_pred             -------cCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCc-cCH-----------HHHhCCcCCCEEEccC
Confidence                   7899999999999 777766  36789999999999886432 211           1345678999999988


Q ss_pred             cccccccccCCcCCCCccEEEecCCCCCCCCCCCCc
Q 045137          239 LPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSN  274 (312)
Q Consensus       239 ~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~  274 (312)
                      ++-       .+.++.|+.+++..+.--..+|....
T Consensus       215 N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          215 NPW-------DCTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             SCB-------CCCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             CCc-------cccCcHHHHHHHHHHhCCCcccCccc
Confidence            741       24477788777765433334554333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.63  E-value=9.7e-16  Score=131.66  Aligned_cols=182  Identities=18%  Similarity=0.202  Sum_probs=129.8

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      ++..+.+..+. .++.+++|++|++++| .+..++.  +..+++|++|++++|.+..+                 ..+..
T Consensus        30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n~l~~~-----------------~~l~~   88 (291)
T 1h6t_A           30 NLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDI-----------------KPLAN   88 (291)
T ss_dssp             HTTCSCTTSEE-CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCC-----------------GGGTT
T ss_pred             HhcCCCccccc-chhhcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCCccCCC-----------------ccccc
Confidence            34555555543 3467888888888888 7777764  88888888888888877531                 12777


Q ss_pred             CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccc
Q 045137           83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRK  162 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  162 (312)
                      +++|+.|+++.+....++.+..++    +|+.|+++++....   + ..+..+++|++|+++++ .+..+  ..+.    
T Consensus        89 l~~L~~L~l~~n~l~~~~~l~~l~----~L~~L~L~~n~i~~---~-~~l~~l~~L~~L~l~~n-~l~~~--~~l~----  153 (291)
T 1h6t_A           89 LKNLGWLFLDENKVKDLSSLKDLK----KLKSLSLEHNGISD---I-NGLVHLPQLESLYLGNN-KITDI--TVLS----  153 (291)
T ss_dssp             CTTCCEEECCSSCCCCGGGGTTCT----TCCEEECTTSCCCC---C-GGGGGCTTCCEEECCSS-CCCCC--GGGG----
T ss_pred             CCCCCEEECCCCcCCCChhhccCC----CCCEEECCCCcCCC---C-hhhcCCCCCCEEEccCC-cCCcc--hhhc----
Confidence            888888888877666666666666    78888888764322   2 45777888888988876 45544  2332    


Q ss_pred             cCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137          163 RREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLP  240 (312)
Q Consensus       163 ~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  240 (312)
                           .+++|++|++++| .+.+++.+..+++|++|++++|.. ..+ +            ....+++|+.|++++++
T Consensus       154 -----~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N~i-~~l-~------------~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          154 -----RLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHI-SDL-R------------ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -----GCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBC-G------------GGTTCTTCSEEEEEEEE
T ss_pred             -----cCCCCCEEEccCC-ccccchhhcCCCccCEEECCCCcC-CCC-h------------hhccCCCCCEEECcCCc
Confidence                 7788999999888 777776788888999999888753 332 1            24567888888888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.63  E-value=2e-15  Score=128.57  Aligned_cols=218  Identities=17%  Similarity=0.146  Sum_probs=150.9

Q ss_pred             EEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHH--H
Q 045137           24 CLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ--I  101 (312)
Q Consensus        24 ~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~--~  101 (312)
                      +.+-.+. .+..+|.. +.  ++|++|++++|.+..+               ....+..+++|+.++++.+....+.  .
T Consensus        11 ~~~c~~~-~l~~ip~~-l~--~~l~~L~ls~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (276)
T 2z62_A           11 TYQCMEL-NFYKIPDN-LP--FSTKNLDLSFNPLRHL---------------GSYSFFSFPELQVLDLSRCEIQTIEDGA   71 (276)
T ss_dssp             EEECTTS-CCSSCCSS-SC--TTCCEEECTTCCCCEE---------------CTTTTTTCTTCSEEECTTCCCCEECTTT
T ss_pred             eEEecCC-CccccCCC-CC--CCccEEECCCCccccc---------------CHhHhccccCCcEEECCCCcCCccCHHH
Confidence            3445555 67778875 33  5799999999988652               2346778889999999876554332  3


Q ss_pred             HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCC
Q 045137          102 LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCH  181 (312)
Q Consensus       102 l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  181 (312)
                      +..++    +|+.|+++++.-. ... ...+..+++|++|+++++ .+..+....+.         .+++|++|++++| 
T Consensus        72 ~~~l~----~L~~L~L~~n~l~-~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n-  134 (276)
T 2z62_A           72 YQSLS----HLSTLILTGNPIQ-SLA-LGAFSGLSSLQKLVAVET-NLASLENFPIG---------HLKTLKELNVAHN-  134 (276)
T ss_dssp             TTTCT----TCCEEECTTCCCC-EEC-TTTTTTCTTCCEEECTTS-CCCCSTTCCCT---------TCTTCCEEECCSS-
T ss_pred             ccCCc----CCCEEECCCCccC-ccC-hhhhcCCccccEEECCCC-CccccCchhcc---------cCCCCCEEECcCC-
Confidence            55566    8999999876432 222 256788999999999976 45444333333         7899999999999 


Q ss_pred             Cccc--CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcC----eeeccccccccccccCCcCCCC
Q 045137          182 KLKD--ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLK----SLDLSYLPELKSIFWKPLPFTH  254 (312)
Q Consensus       182 ~l~~--l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~  254 (312)
                      .+..  +| .++.+++|++|++++|...... .           .....+++|+    +|+++++ .++.+........+
T Consensus       135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~-----------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~  201 (276)
T 2z62_A          135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-C-----------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIR  201 (276)
T ss_dssp             CCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-G-----------GGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCC
T ss_pred             ccceecCchhhccCCCCCEEECCCCCCCcCC-H-----------HHhhhhhhccccceeeecCCC-cccccCccccCCCc
Confidence            6665  45 7888999999999998643322 1           0223345555    7888875 57777666556678


Q ss_pred             ccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137          255 LKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN  291 (312)
Q Consensus       255 L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~  291 (312)
                      |+.|+++++ +++.+|........+++.+....|-|.
T Consensus       202 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          202 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             EEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence            999999996 588888766555577777765444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.63  E-value=5.1e-16  Score=134.71  Aligned_cols=216  Identities=18%  Similarity=0.160  Sum_probs=154.5

Q ss_pred             cccCCCCCc--cccHHhh-------CCCCCcEEecCCCCCcc-ccCchhh-hccccccEEEEecccccccccCCCCcccc
Q 045137            2 LDISHTTIR--ELPEELK-------LLVNLKCLNLRWTGALI-RIPRGLI-SKFSRLRVLRMLGTGGFIFYEAPEDSVLF   70 (312)
Q Consensus         2 L~Ls~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~~~-~lp~~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   70 (312)
                      |+|++|.+.  .+|..+.       .+++|++|++++| .+. .+|..++ ..+++|++|++++|.+..+|         
T Consensus        68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------  137 (312)
T 1wwl_A           68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRD---------  137 (312)
T ss_dssp             CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS---------
T ss_pred             cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchh---------
Confidence            688888885  4677766       8999999999999 666 5787632 89999999999999886522         


Q ss_pred             CCccchhhhccC--CCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhh--cCccccceEEec
Q 045137           71 GGGEVLIQELLG--LKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAF--TDLNHLNELWID  144 (312)
Q Consensus        71 ~~~~~~~~~l~~--L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l--~~l~~L~~L~l~  144 (312)
                          ..+..+..  +++|+.|+++.+......  .+..++    +|+.|+++++...........+  ..+++|++|+++
T Consensus       138 ----~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~----~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~  209 (312)
T 1wwl_A          138 ----AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP----ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR  209 (312)
T ss_dssp             ----SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS----SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT
T ss_pred             ----HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC----CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC
Confidence                22223322  288999999977654333  455566    8999999987533322222333  788999999999


Q ss_pred             cCcCcceee---eeccccccccCCCCcccccceEeecCCCCcccC---CccCCCCCCceEEEeeccccceecccCccccC
Q 045137          145 NGIELEELK---IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS---TFLAFAPNLKSLSLFKCRAMEEIISVGKIAEN  218 (312)
Q Consensus       145 ~~~~l~~l~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  218 (312)
                      ++ .+..++   .....         .+++|++|++++| .+...   +.+..+++|++|++++|... .+ +       
T Consensus       210 ~N-~l~~~~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i-p-------  269 (312)
T 1wwl_A          210 NA-GMETPSGVCSALAA---------ARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV-P-------  269 (312)
T ss_dssp             TS-CCCCHHHHHHHHHH---------TTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCS-SC-C-------
T ss_pred             CC-cCcchHHHHHHHHh---------cCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccC-hh-h-------
Confidence            87 454321   12222         5689999999999 66663   34556899999999998643 32 1       


Q ss_pred             CCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCC
Q 045137          219 PEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRAC  263 (312)
Q Consensus       219 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c  263 (312)
                            ...+++|++|+++++ .++.++. ...+++|+.|++++.
T Consensus       270 ------~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          270 ------KGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             ------SSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred             ------hhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence                  111289999999985 6777744 778999999999884

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=1.3e-15  Score=130.71  Aligned_cols=54  Identities=17%  Similarity=0.233  Sum_probs=33.3

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF   58 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~   58 (312)
                      ++++++.++.+|.++.  +++++|++++| .+..+++..+..+++|++|++++|.+.
T Consensus        15 l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~   68 (290)
T 1p9a_G           15 VNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELT   68 (290)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred             EECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccC
Confidence            4556666666665443  56666666666 556555444666666666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=4.2e-16  Score=132.60  Aligned_cols=155  Identities=20%  Similarity=0.171  Sum_probs=69.8

Q ss_pred             hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      .+..+++|+.|+++.+....++.+..++    +|+.|+++++.-. .... ..+..+++|++|+++++ .+..+....+.
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~----~L~~L~L~~n~l~-~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~  130 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHDISALKELT----NLTYLILTGNQLQ-SLPN-GVFDKLTNLKELVLVEN-QLQSLPDGVFD  130 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGGGTTCT----TCCEEECTTSCCC-CCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred             ccccCCCCcEEECCCCCCCCchhhcCCC----CCCEEECCCCccC-ccCh-hHhcCCcCCCEEECCCC-cCCccCHHHhc
Confidence            3445555555555544433333344444    5555555544221 1111 23445555555555544 33333322222


Q ss_pred             cccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeec
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDL  236 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  236 (312)
                               .+++|++|++++| .+..++  .++.+++|++|++++|... .+.+           .....+++|++|++
T Consensus       131 ---------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-----------~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          131 ---------KLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPE-----------GVFDKLTQLKDLRL  188 (272)
T ss_dssp             ---------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT-----------TTTTTCTTCCEEEC
T ss_pred             ---------cCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC-ccCH-----------HHhcCCccCCEEEC
Confidence                     4555555555555 444443  2445555555555555322 1110           01234455555555


Q ss_pred             cccccccccccC-CcCCCCccEEEecCC
Q 045137          237 SYLPELKSIFWK-PLPFTHLKEMGVRAC  263 (312)
Q Consensus       237 ~~~~~l~~~~~~-~~~~~~L~~L~i~~c  263 (312)
                      +++ .++.+... ...+++|+.|++.++
T Consensus       189 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          189 YQN-QLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence            553 24333332 234555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=3.2e-16  Score=142.92  Aligned_cols=239  Identities=16%  Similarity=0.055  Sum_probs=126.6

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccc-------------cEEEEecccccccccCCCCc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRL-------------RVLRMLGTGGFIFYEAPEDS   67 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L-------------~~L~l~~~~~~~~~~~~~~~   67 (312)
                      +|++++|.+..+|.+|++|++|++|++++|...+.+|.+ ++++++|             ++|++++|.+..+|.....+
T Consensus        15 ~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L   93 (454)
T 1jl5_A           15 EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHL   93 (454)
T ss_dssp             -------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTC
T ss_pred             hhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCC
Confidence            368899999999999999999999999999444468876 8887765             88999988887665422111


Q ss_pred             cccCCccchhhhcc-CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           68 VLFGGGEVLIQELL-GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        68 ~~~~~~~~~~~~l~-~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      .........+..+. .+.+|+.++++.+....++.   .   ..+|+.|+++++.-..   + +.++.+++|++|+++++
T Consensus        94 ~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~---~---~~~L~~L~L~~n~l~~---l-p~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           94 ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD---L---PPLLEYLGVSNNQLEK---L-PELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             SEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCS---C---CTTCCEEECCSSCCSS---C-CCCTTCTTCCEEECCSS
T ss_pred             CEEEccCCcCCccccccCCCcEEECCCCccCcccC---C---CCCCCEEECcCCCCCC---C-cccCCCCCCCEEECCCC
Confidence            11100000011111 13567777777655433221   1   1278888888764322   3 25778888888988876


Q ss_pred             cCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecccccee--cccC-----ccccCC
Q 045137          147 IELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEI--ISVG-----KIAENP  219 (312)
Q Consensus       147 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~--~~~~-----~~~~~~  219 (312)
                       .++.++.             ..++|++|++++| .+..+|.++.+++|++|++++|......  ....     ....+.
T Consensus       164 -~l~~lp~-------------~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          164 -SLKKLPD-------------LPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE  228 (454)
T ss_dssp             -CCSCCCC-------------CCTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred             -cCcccCC-------------CcccccEEECcCC-cCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence             4443321             3468888888888 6777777788888888888877533210  0000     000001


Q ss_pred             CCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCC
Q 045137          220 EMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPL  271 (312)
Q Consensus       220 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  271 (312)
                      .+. ....+++|++|+++++ .++.++.   .+++|+.|+++++ +++.+|.
T Consensus       229 ~lp-~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~  274 (454)
T 1jl5_A          229 ELP-ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPE  274 (454)
T ss_dssp             SCC-CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCC
T ss_pred             ccc-ccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCc
Confidence            111 2345666666666664 3443321   2466777777664 4555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.60  E-value=2.1e-15  Score=141.85  Aligned_cols=165  Identities=20%  Similarity=0.209  Sum_probs=109.5

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|++++|.+..+| +++.+++|+.|+|++| .+..+++  +..+++|++|++++|.+..                 +..+
T Consensus        47 ~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----------------l~~l  105 (605)
T 1m9s_A           47 QIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKD-----------------LSSL  105 (605)
T ss_dssp             CCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CTTS
T ss_pred             EEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCC-----------------Chhh
Confidence            3567777777775 5777777777777777 6666665  7777777777777776632                 2356


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ..+++|+.|+++.+....++.+..++    +|+.|+++++....   + ..+..+++|+.|+++++ .+..+..  +.  
T Consensus       106 ~~l~~L~~L~Ls~N~l~~l~~l~~l~----~L~~L~Ls~N~l~~---l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~--  172 (605)
T 1m9s_A          106 KDLKKLKSLSLEHNGISDINGLVHLP----QLESLYLGNNKITD---I-TVLSRLTKLDTLSLEDN-QISDIVP--LA--  172 (605)
T ss_dssp             TTCTTCCEEECTTSCCCCCGGGGGCT----TCSEEECCSSCCCC---C-GGGGSCTTCSEEECCSS-CCCCCGG--GT--
T ss_pred             ccCCCCCEEEecCCCCCCCccccCCC----ccCEEECCCCccCC---c-hhhcccCCCCEEECcCC-cCCCchh--hc--
Confidence            66777777777766555555555555    67777777653222   1 45667777777777765 4443322  22  


Q ss_pred             cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAME  207 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~  207 (312)
                             .+++|+.|+|++| .+.+++.+..+++|+.|++++|....
T Consensus       173 -------~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          173 -------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred             -------cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcCcC
Confidence                   6777777777777 66667777777777777777765433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.60  E-value=2.4e-15  Score=129.14  Aligned_cols=200  Identities=19%  Similarity=0.117  Sum_probs=148.0

Q ss_pred             HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEec
Q 045137           15 ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG   94 (312)
Q Consensus        15 ~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~   94 (312)
                      .++++++++.++++++ .+..+|.+ +.  +++++|++++|.+..               .....+..+.+|+.|+++.+
T Consensus         5 ~~~~l~~l~~l~~~~~-~l~~ip~~-~~--~~l~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~n   65 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKR-NLTALPPD-LP--KDTTILHLSENLLYT---------------FSLATLMPYTRLTQLNLDRA   65 (290)
T ss_dssp             EEECSTTCCEEECTTS-CCSSCCSC-CC--TTCCEEECTTSCCSE---------------EEGGGGTTCTTCCEEECTTS
T ss_pred             cccccCCccEEECCCC-CCCcCCCC-CC--CCCCEEEcCCCcCCc---------------cCHHHhhcCCCCCEEECCCC
Confidence            3677899999999998 88899876 43  689999999998854               33456778888999998876


Q ss_pred             ChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccce
Q 045137           95 SYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHL  174 (312)
Q Consensus        95 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  174 (312)
                      ....++....++    +|+.|++++..-.   .++..+..+++|++|+++++ .++.++...+.         .+++|++
T Consensus        66 ~l~~~~~~~~l~----~L~~L~Ls~N~l~---~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~---------~l~~L~~  128 (290)
T 1p9a_G           66 ELTKLQVDGTLP----VLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFN-RLTSLPLGALR---------GLGELQE  128 (290)
T ss_dssp             CCCEEECCSCCT----TCCEEECCSSCCS---SCCCCTTTCTTCCEEECCSS-CCCCCCSSTTT---------TCTTCCE
T ss_pred             ccCcccCCCCCC----cCCEEECCCCcCC---cCchhhccCCCCCEEECCCC-cCcccCHHHHc---------CCCCCCE
Confidence            654444334444    7889998876432   33346778889999999876 66666544443         7899999


Q ss_pred             EeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCC
Q 045137          175 VTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPF  252 (312)
Q Consensus       175 L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  252 (312)
                      |++++| .+..++  .+..+++|+.|++++|... .+..           .....+++|++|+++++ .++.++......
T Consensus       129 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~-----------~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~  194 (290)
T 1p9a_G          129 LYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA-----------GLLNGLENLDTLLLQEN-SLYTIPKGFFGS  194 (290)
T ss_dssp             EECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS-CCCT-----------TTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             EECCCC-CCCccChhhcccccCCCEEECCCCcCC-ccCH-----------HHhcCcCCCCEEECCCC-cCCccChhhccc
Confidence            999998 777766  4678999999999888643 3211           12356788999999885 688887777778


Q ss_pred             CCccEEEecCCC
Q 045137          253 THLKEMGVRACD  264 (312)
Q Consensus       253 ~~L~~L~i~~c~  264 (312)
                      +.|+.+.+.+.+
T Consensus       195 ~~L~~l~L~~Np  206 (290)
T 1p9a_G          195 HLLPFAFLHGNP  206 (290)
T ss_dssp             CCCSEEECCSCC
T ss_pred             ccCCeEEeCCCC
Confidence            889999988643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.60  E-value=5.3e-15  Score=139.38  Aligned_cols=53  Identities=21%  Similarity=0.298  Sum_probs=40.1

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY   61 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~   61 (312)
                      |+++++.++.+|..+.  ++|++|++++| .+..+|.    .+++|++|++++|.+..+|
T Consensus        45 L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp   97 (622)
T 3g06_A           45 LNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLP   97 (622)
T ss_dssp             EECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCC
T ss_pred             EEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCC
Confidence            6778888888886665  78888888888 7777776    4678888888888776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.59  E-value=4.6e-15  Score=127.43  Aligned_cols=164  Identities=20%  Similarity=0.216  Sum_probs=128.5

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      |++++|.+..+| +++.+++|++|++++| .+..+++  +.++++|++|++++|.+..                 +..+.
T Consensus        51 L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~  109 (291)
T 1h6t_A           51 IIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKD-----------------LSSLK  109 (291)
T ss_dssp             EECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----------------GGGGT
T ss_pred             EEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCC-----------------Chhhc
Confidence            678888888886 5888999999999999 7888776  8899999999999987742                 34577


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+++|+.|+++.+....++.+..++    +|+.|+++++....   + ..+..+++|+.|+++++ .+..+..  +.   
T Consensus       110 ~l~~L~~L~L~~n~i~~~~~l~~l~----~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~---  175 (291)
T 1h6t_A          110 DLKKLKSLSLEHNGISDINGLVHLP----QLESLYLGNNKITD---I-TVLSRLTKLDTLSLEDN-QISDIVP--LA---  175 (291)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGGGCT----TCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSS-CCCCCGG--GT---
T ss_pred             cCCCCCEEECCCCcCCCChhhcCCC----CCCEEEccCCcCCc---c-hhhccCCCCCEEEccCC-ccccchh--hc---
Confidence            8888999998877666666666666    88899888764322   2 56778889999999876 5554432  32   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAME  207 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~  207 (312)
                            .+++|++|++++| .+++++.+..+++|+.|++++|....
T Consensus       176 ------~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          176 ------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred             ------CCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCcccC
Confidence                  7889999999998 78888888889999999998886433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.58  E-value=3.2e-15  Score=125.56  Aligned_cols=146  Identities=18%  Similarity=0.237  Sum_probs=91.2

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.++.+|.++.  ++|++|++++| .+..+++..+.++++|++|++++|.+..               .....+.
T Consensus        19 l~~~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~   80 (251)
T 3m19_A           19 VDCQGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQT---------------LSAGVFD   80 (251)
T ss_dssp             EECTTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCC---------------CCTTTTT
T ss_pred             EecCCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCc---------------cCHhHhc
Confidence            6788889999997665  68999999999 7888877668999999999999998854               2234456


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+++|+.|+++.+....++                            ...+..+++|++|+++++ .+..+....+.   
T Consensus        81 ~l~~L~~L~L~~n~l~~~~----------------------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---  128 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLP----------------------------LGVFDHLTQLDKLYLGGN-QLKSLPSGVFD---  128 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCC----------------------------TTTTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred             cCCcCCEEECCCCcccccC----------------------------hhHhcccCCCCEEEcCCC-cCCCcChhHhc---
Confidence            6677777777644332111                            023344455555555543 33333322222   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeecc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~  204 (312)
                            .+++|++|++++| .+..++  .++.+++|++|++++|.
T Consensus       129 ------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          129 ------RLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             ------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ------cCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc
Confidence                  4555555555555 444444  34555555555555553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=1e-14  Score=137.15  Aligned_cols=182  Identities=18%  Similarity=0.203  Sum_probs=141.8

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      +++.+.+..++ .+..|.+|+.|++++| .+..++.  +..+++|+.|++++|.+..+                 ..+..
T Consensus        27 ~l~~~~i~~~~-~~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~~~-----------------~~l~~   85 (605)
T 1m9s_A           27 NLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDI-----------------KPLTN   85 (605)
T ss_dssp             HTTCSCTTSEE-CHHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCCCC-----------------GGGGG
T ss_pred             hccCCCccccc-chhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCCCC-----------------hhhcc
Confidence            45666676654 3678999999999999 8888875  99999999999999988532                 22788


Q ss_pred             CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccc
Q 045137           83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRK  162 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  162 (312)
                      +++|+.|+++.+....++.+..++    +|+.|+++++....   + ..+..+++|+.|+++++ .+..+  ..+.    
T Consensus        86 l~~L~~L~Ls~N~l~~l~~l~~l~----~L~~L~Ls~N~l~~---l-~~l~~l~~L~~L~Ls~N-~l~~l--~~l~----  150 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKDLSSLKDLK----KLKSLSLEHNGISD---I-NGLVHLPQLESLYLGNN-KITDI--TVLS----  150 (605)
T ss_dssp             CTTCCEEECCSSCCCCCTTSTTCT----TCCEEECTTSCCCC---C-GGGGGCTTCSEEECCSS-CCCCC--GGGG----
T ss_pred             CCCCCEEECcCCCCCCChhhccCC----CCCEEEecCCCCCC---C-ccccCCCccCEEECCCC-ccCCc--hhhc----
Confidence            999999999988776666666666    89999988764322   2 56788899999999976 55544  3333    


Q ss_pred             cCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137          163 RREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLP  240 (312)
Q Consensus       163 ~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  240 (312)
                           .+++|+.|+|++| .+..++.+..+++|+.|+|++|.. ..+ +            ....+++|+.|++++++
T Consensus       151 -----~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~i-~~l-~------------~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          151 -----RLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHI-SDL-R------------ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             -----SCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBC-G------------GGTTCTTCSEEECCSEE
T ss_pred             -----ccCCCCEEECcCC-cCCCchhhccCCCCCEEECcCCCC-CCC-h------------HHccCCCCCEEEccCCc
Confidence                 7899999999999 777776788999999999998854 332 1            34568899999998864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.55  E-value=3.4e-14  Score=133.87  Aligned_cols=221  Identities=16%  Similarity=0.105  Sum_probs=128.2

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|+|++|.++.+|.   .+++|++|+|++| .+..+|.    .+++|++|++++|.+..+|.....+.........+..+
T Consensus        65 ~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~l  136 (622)
T 3g06_A           65 TLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL  136 (622)
T ss_dssp             EEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCC
T ss_pred             EEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcC
Confidence            37888999998886   6889999999999 7888876    57889999999888876654222211110000001111


Q ss_pred             c-CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137           81 L-GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI  159 (312)
Q Consensus        81 ~-~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  159 (312)
                      . .+++|+.|+++.+....++.      ...+|+.|.+.++....   + +  ..+++|+.|+++++ .+..++......
T Consensus       137 p~~l~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~~---l-~--~~~~~L~~L~Ls~N-~l~~l~~~~~~L  203 (622)
T 3g06_A          137 PVLPPGLQELSVSDNQLASLPA------LPSELCKLWAYNNQLTS---L-P--MLPSGLQELSVSDN-QLASLPTLPSEL  203 (622)
T ss_dssp             CCCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC---C-C--CCCTTCCEEECCSS-CCSCCCCCCTTC
T ss_pred             CCCCCCCCEEECcCCcCCCcCC------ccCCCCEEECCCCCCCC---C-c--ccCCCCcEEECCCC-CCCCCCCccchh
Confidence            1 13677788877665433221      12256666666543211   1 1  33456666666654 333322100000


Q ss_pred             ---------ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCC
Q 045137          160 ---------VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFEN  230 (312)
Q Consensus       160 ---------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (312)
                               ....+.  .+++|+.|++++| .++.+|  ..+++|+.|++++|.. ..+ +              ..+++
T Consensus       204 ~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~L-~~l-p--------------~~~~~  262 (622)
T 3g06_A          204 YKLWAYNNRLTSLPA--LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNRL-TSL-P--------------MLPSG  262 (622)
T ss_dssp             CEEECCSSCCSSCCC--CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSCC-SCC-C--------------CCCTT
T ss_pred             hEEECcCCcccccCC--CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCCC-CcC-C--------------ccccc
Confidence                     000111  3466777777766 555555  4456777777776643 222 1              15678


Q ss_pred             cCeeeccccccccccccCCcCCCCccEEEecCCC
Q 045137          231 LKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACD  264 (312)
Q Consensus       231 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~  264 (312)
                      |++|+++++ .++.++.....+++|+.|++++++
T Consensus       263 L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          263 LLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            888888886 577776666778888888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.54  E-value=4.6e-14  Score=133.51  Aligned_cols=111  Identities=12%  Similarity=0.076  Sum_probs=81.5

Q ss_pred             cccccceEeecCCCCccc-CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccc
Q 045137          168 VFHSLHLVTIYSCHKLKD-ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSI  245 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  245 (312)
                      .++.|+.|++++|..... .| .+..+++|++|++++|.. ..+.+           .....+++|++|+++++ .++.+
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L-~~l~~-----------~~f~~l~~L~~L~Ls~N-~l~~l  533 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSP-----------TAFNSLSSLQVLNMSHN-NFFSL  533 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CEECT-----------TTTTTCTTCCEEECTTS-CCCBC
T ss_pred             cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc-CCcCh-----------HHHcCCCCCCEEECCCC-cCCCC
Confidence            568999999999854554 34 688899999999999864 44322           13467899999999996 57776


Q ss_pred             ccC-CcCCCCccEEEecCCCCCCCCCCCCccc-cccceEeeehHhhhhh
Q 045137          246 FWK-PLPFTHLKEMGVRACDQLRKLPLDSNSA-KERKFVIRGEEDWWNR  292 (312)
Q Consensus       246 ~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~-~~~l~~i~~~~~~~~~  292 (312)
                      ... ...+++|+.|+++++ +++.++...... ..+++.+....|.|.+
T Consensus       534 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          534 DTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             ChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            544 567899999999985 787776655443 3678887655555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=1.6e-14  Score=122.13  Aligned_cols=163  Identities=16%  Similarity=0.219  Sum_probs=125.4

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.++.++ .++.+++|++|++++| .+..+|.  +..+++|++|++++|.+..+                 ..+.
T Consensus        24 l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N~i~~~-----------------~~l~   82 (263)
T 1xeu_A           24 QNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHNQISDL-----------------SPLK   82 (263)
T ss_dssp             HHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCC-----------------GGGT
T ss_pred             HHhcCCCccccc-chhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCCccCCC-----------------hhhc
Confidence            567888999888 7899999999999999 8899883  99999999999999988542                 1277


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+++|+.|+++.+....++.+.. .    +|+.|+++++.-..   + ..+..+++|+.|+++++ .++.++  .+.   
T Consensus        83 ~l~~L~~L~L~~N~l~~l~~~~~-~----~L~~L~L~~N~l~~---~-~~l~~l~~L~~L~Ls~N-~i~~~~--~l~---  147 (263)
T 1xeu_A           83 DLTKLEELSVNRNRLKNLNGIPS-A----CLSRLFLDNNELRD---T-DSLIHLKNLEILSIRNN-KLKSIV--MLG---  147 (263)
T ss_dssp             TCSSCCEEECCSSCCSCCTTCCC-S----SCCEEECCSSCCSB---S-GGGTTCTTCCEEECTTS-CCCBCG--GGG---
T ss_pred             cCCCCCEEECCCCccCCcCcccc-C----cccEEEccCCccCC---C-hhhcCcccccEEECCCC-cCCCCh--HHc---
Confidence            88999999998776655444333 3    78888888764322   2 45778888889998876 455542  232   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAME  207 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~  207 (312)
                            .+++|+.|++++| .+.+++.+..+++|+.|++++|....
T Consensus       148 ------~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          148 ------FLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             ------GCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEEEEC
T ss_pred             ------cCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCcccC
Confidence                  7788899999888 77777778888889999888876433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=125.81  Aligned_cols=201  Identities=16%  Similarity=0.025  Sum_probs=137.7

Q ss_pred             CCCCCcEEecCCCCCcc-ccCchhh--hccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEec
Q 045137           18 LLVNLKCLNLRWTGALI-RIPRGLI--SKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG   94 (312)
Q Consensus        18 ~L~~L~~L~L~~~~~~~-~lp~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~   94 (312)
                      .+++|++|++++| .+. ..|.. +  ..+++|++|++++|.+.....           ......+..+++|+.|+++.+
T Consensus        89 ~~~~L~~L~l~~n-~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~-----------~~~~~~~~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           89 AYSRLKELTLEDL-KITGTMPPL-PLEATGLALSSLRLRNVSWATGRS-----------WLAELQQWLKPGLKVLSIAQA  155 (310)
T ss_dssp             HHSCCCEEEEESC-CCBSCCCCC-SSSCCCBCCSSCEEESCCCSSTTS-----------SHHHHHTTBCSCCCEEEEECC
T ss_pred             ccCceeEEEeeCC-Eeccchhhh-hhhccCCCCCEEEeecccccchhh-----------hhHHHHhhhccCCCEEEeeCC
Confidence            4577999999999 555 45554 5  889999999999998853110           011133447889999999977


Q ss_pred             ChhhHH--HHhhcccccccceEEEEeecCCCccccc--hhhhcCccccceEEeccCcCcceeeee---ccccccccCCCC
Q 045137           95 SYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIID--ATAFTDLNHLNELWIDNGIELEELKID---YTEIVRKRREPF  167 (312)
Q Consensus        95 ~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~~~~~~~~~~  167 (312)
                      ......  .+..++    +|+.|+++++........  ...+..+++|++|+++++ .++.++..   ...         
T Consensus       156 ~l~~~~~~~~~~l~----~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~---------  221 (310)
T 4glp_A          156 HSPAFSCEQVRAFP----ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA---------  221 (310)
T ss_dssp             SSCCCCTTSCCCCT----TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH---------
T ss_pred             CcchhhHHHhccCC----CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh---------
Confidence            654332  344555    899999998753332212  123467889999999987 55433321   112         


Q ss_pred             cccccceEeecCCCCcccC-C-ccCCC---CCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccc
Q 045137          168 VFHSLHLVTIYSCHKLKDS-T-FLAFA---PNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPEL  242 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~l-~-~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  242 (312)
                      .+++|++|++++| .+... | .++.+   ++|++|++++|... .+ +             ...+++|++|+++++ .+
T Consensus       222 ~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~l-p-------------~~~~~~L~~L~Ls~N-~l  284 (310)
T 4glp_A          222 AGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QV-P-------------KGLPAKLRVLDLSSN-RL  284 (310)
T ss_dssp             HTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SC-C-------------SCCCSCCSCEECCSC-CC
T ss_pred             cCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC-ch-h-------------hhhcCCCCEEECCCC-cC
Confidence            5699999999999 66664 4 45554   79999999988643 33 1             122489999999986 57


Q ss_pred             cccccCCcCCCCccEEEecCC
Q 045137          243 KSIFWKPLPFTHLKEMGVRAC  263 (312)
Q Consensus       243 ~~~~~~~~~~~~L~~L~i~~c  263 (312)
                      +.++. ...+++|+.|++++.
T Consensus       285 ~~~~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          285 NRAPQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             CSCCC-TTSCCCCSCEECSST
T ss_pred             CCCch-hhhCCCccEEECcCC
Confidence            76643 567899999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.53  E-value=5.2e-14  Score=128.30  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=78.5

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcc---ccCCccchhh
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSV---LFGGGEVLIQ   78 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~~~~~   78 (312)
                      |++++|.++.+|..   .++|++|++++| .+..+|.  ++++++|++|++++|.+..+|..+..+.   ..+-....+.
T Consensus       116 L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~  189 (454)
T 1jl5_A          116 LLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP  189 (454)
T ss_dssp             EECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC
T ss_pred             EECCCCccCcccCC---CCCCCEEECcCC-CCCCCcc--cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc
Confidence            34455555444321   157888888888 6777773  7888888888888887776654432221   1111112233


Q ss_pred             hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      .+..+++|+.++++.+....++.      ...+|+.|+++++.-.   .+ +.+..+++|++|+++++
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~n~l~---~l-p~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKKLPD------LPLSLESIVAGNNILE---EL-PELQNLPFLTTIYADNN  247 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCS---SC-CCCTTCTTCCEEECCSS
T ss_pred             cccCCCCCCEEECCCCcCCcCCC------CcCcccEEECcCCcCC---cc-cccCCCCCCCEEECCCC
Confidence            56778888888887665433221      1227888888876432   22 24677888888888875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.52  E-value=3e-14  Score=115.16  Aligned_cols=149  Identities=15%  Similarity=0.131  Sum_probs=76.8

Q ss_pred             hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecCh
Q 045137           17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY   96 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~   96 (312)
                      +.+++|++|++++| .+..+| + +..+++|++|++++|.+.                 .+..+..+++|+.|+++.+..
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~~~-----------------~~~~l~~l~~L~~L~l~~n~l  100 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIHAT-----------------NYNPISGLSNLERLRIMGKDV  100 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCCCS-----------------CCGGGTTCTTCCEEEEECTTC
T ss_pred             hhcCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCCCC-----------------cchhhhcCCCCCEEEeECCcc
Confidence            56778888888888 777777 3 788888888888877552                 233555666677777765543


Q ss_pred             hh--HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccce
Q 045137           97 HA--LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHL  174 (312)
Q Consensus        97 ~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  174 (312)
                      ..  ...+..++    +|+.|+++++....  ..+..+..+++|++|+++++..+..++  .+.         .+++|+.
T Consensus       101 ~~~~~~~l~~l~----~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~---------~l~~L~~  163 (197)
T 4ezg_A          101 TSDKIPNLSGLT----SLTLLDISHSAHDD--SILTKINTLPKVNSIDLSYNGAITDIM--PLK---------TLPELKS  163 (197)
T ss_dssp             BGGGSCCCTTCT----TCCEEECCSSBCBG--GGHHHHTTCSSCCEEECCSCTBCCCCG--GGG---------GCSSCCE
T ss_pred             CcccChhhcCCC----CCCEEEecCCccCc--HhHHHHhhCCCCCEEEccCCCCccccH--hhc---------CCCCCCE
Confidence            22  22223333    44444444432111  011334444455555554442233221  111         3444555


Q ss_pred             EeecCCCCcccCCccCCCCCCceEEEeec
Q 045137          175 VTIYSCHKLKDSTFLAFAPNLKSLSLFKC  203 (312)
Q Consensus       175 L~l~~~~~l~~l~~l~~l~~L~~L~l~~~  203 (312)
                      |++++| .+.+++.+..+++|++|++.++
T Consensus       164 L~l~~n-~i~~~~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          164 LNIQFD-GVHDYRGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECTTB-CCCCCTTGGGCSSCCEEEECBC
T ss_pred             EECCCC-CCcChHHhccCCCCCEEEeeCc
Confidence            555444 3444444444455555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.52  E-value=2.2e-15  Score=133.43  Aligned_cols=58  Identities=12%  Similarity=0.098  Sum_probs=40.4

Q ss_pred             CcccCCCCCcc-ccHHhhCCCCCcEEecCCCCCccccCc----hhhhccc-cccEEEEecccccc
Q 045137            1 LLDISHTTIRE-LPEELKLLVNLKCLNLRWTGALIRIPR----GLISKFS-RLRVLRMLGTGGFI   59 (312)
Q Consensus         1 ~L~Ls~~~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp~----~~i~~l~-~L~~L~l~~~~~~~   59 (312)
                      |+++++|.++. +|..++..++|++|++++| .+...+.    ..+..++ +|++|++++|.+..
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~   65 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGF   65 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCH
Confidence            45677787774 4455555556888888888 6777765    4467777 78888888887753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.52  E-value=4.2e-14  Score=114.29  Aligned_cols=145  Identities=21%  Similarity=0.273  Sum_probs=115.7

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|++++|.+..+| +++.+++|++|++++| .+..++.  +..+++|++|++++|.+..               ..+..+
T Consensus        48 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~l~~---------------~~~~~l  108 (197)
T 4ezg_A           48 YITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKDVTS---------------DKIPNL  108 (197)
T ss_dssp             EEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTTCBG---------------GGSCCC
T ss_pred             EEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCccCc---------------ccChhh
Confidence            3788999999998 8999999999999999 7777764  9999999999999998853               345667


Q ss_pred             cCCCCceEEEEEecChhh--HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           81 LGLKYLEVLELTLGSYHA--LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      ..+++|+.|+++.+....  ...+..++    +|+.|+++++......   +.+..+++|++|+++++ .+..+.  .+.
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~----~L~~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n-~i~~~~--~l~  178 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDSILTKINTLP----KVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFD-GVHDYR--GIE  178 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGGGHHHHTTCS----SCCEEECCSCTBCCCC---GGGGGCSSCCEEECTTB-CCCCCT--TGG
T ss_pred             cCCCCCCEEEecCCccCcHhHHHHhhCC----CCCEEEccCCCCcccc---HhhcCCCCCCEEECCCC-CCcChH--Hhc
Confidence            889999999999876654  66777777    8999999987523332   46888999999999986 555543  333


Q ss_pred             cccccCCCCcccccceEeecCCCCcc
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLK  184 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~  184 (312)
                               .+++|++|++++| .+.
T Consensus       179 ---------~l~~L~~L~l~~N-~i~  194 (197)
T 4ezg_A          179 ---------DFPKLNQLYAFSQ-TIG  194 (197)
T ss_dssp             ---------GCSSCCEEEECBC----
T ss_pred             ---------cCCCCCEEEeeCc-ccC
Confidence                     7899999999998 443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.51  E-value=4e-15  Score=132.87  Aligned_cols=226  Identities=17%  Similarity=0.102  Sum_probs=138.3

Q ss_pred             cccCCCCCcc-----ccHHhhCCCCCcEEecCCCCCcc----ccCchh------hhccccccEEEEecccccccccCCCC
Q 045137            2 LDISHTTIRE-----LPEELKLLVNLKCLNLRWTGALI----RIPRGL------ISKFSRLRVLRMLGTGGFIFYEAPED   66 (312)
Q Consensus         2 L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~~------i~~l~~L~~L~l~~~~~~~~~~~~~~   66 (312)
                      |+|++|.++.     ++..++.+++|++|+|++| .+.    .+|.++      +..+++|++|++++|.+....     
T Consensus        37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~-----  110 (386)
T 2ca6_A           37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA-----  110 (386)
T ss_dssp             EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT-----
T ss_pred             EECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH-----
Confidence            5677777653     3334567777888888776 333    233331      256777888888777664210     


Q ss_pred             ccccCCccchhhhccCCCCceEEEEEecChhhH--HH----Hhhc---------ccccccceEEEEeecCCCccccc---
Q 045137           67 SVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL--QI----LLSS---------NKLKSCIRSLYLYLTGDKKSIID---  128 (312)
Q Consensus        67 ~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~--~~----l~~l---------~~l~~~L~~L~l~~~~~~~~~~~---  128 (312)
                            .......+..+++|+.|+++.+.....  ..    +..+         +    +|+.|+++++... ....   
T Consensus       111 ------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~----~L~~L~L~~n~l~-~~~~~~l  179 (386)
T 2ca6_A          111 ------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP----PLRSIICGRNRLE-NGSMKEW  179 (386)
T ss_dssp             ------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC----CCCEEECCSSCCT-GGGHHHH
T ss_pred             ------HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC----CCcEEECCCCCCC-cHHHHHH
Confidence                  012344667788888888887765321  11    2222         3    7888888876432 2222   


Q ss_pred             hhhhcCccccceEEeccCcCcceee-----eeccccccccCCCCcccccceEeecCCCCcc-----cCC-ccCCCCCCce
Q 045137          129 ATAFTDLNHLNELWIDNGIELEELK-----IDYTEIVRKRREPFVFHSLHLVTIYSCHKLK-----DST-FLAFAPNLKS  197 (312)
Q Consensus       129 ~~~l~~l~~L~~L~l~~~~~l~~l~-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~-~l~~l~~L~~  197 (312)
                      ...+..+++|++|+++++ .+...+     ...+.         .+++|++|++++| .++     .++ .+..+++|++
T Consensus       180 ~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~---------~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          180 AKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLA---------YCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             HHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGG---------GCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCE
T ss_pred             HHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhh---------cCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCE
Confidence            245667788999999876 444211     10222         6789999999988 563     344 6778899999


Q ss_pred             EEEeeccccceecccCccccCCCCCCCC--ccCCCcCeeeccccccccc-----cccCC-cCCCCccEEEecCCC
Q 045137          198 LSLFKCRAMEEIISVGKIAENPEMMGHI--SPFENLKSLDLSYLPELKS-----IFWKP-LPFTHLKEMGVRACD  264 (312)
Q Consensus       198 L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~i~~c~  264 (312)
                      |++++|........        .+....  +.+++|++|+++++. +..     ++... ..+++|+.|++++|+
T Consensus       249 L~L~~n~i~~~~~~--------~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          249 LGLNDCLLSARGAA--------AVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             EECTTCCCCHHHHH--------HHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             EECCCCCCchhhHH--------HHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            99988864332100        000011  337889999998864 554     43333 457999999998864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.48  E-value=4e-14  Score=122.65  Aligned_cols=197  Identities=15%  Similarity=0.046  Sum_probs=138.1

Q ss_pred             CcccCCCCCc-cccHHh--hCCCCCcEEecCCCCCccc-cC---chhhhccccccEEEEecccccccccCCCCccccCCc
Q 045137            1 LLDISHTTIR-ELPEEL--KLLVNLKCLNLRWTGALIR-IP---RGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGG   73 (312)
Q Consensus         1 ~L~Ls~~~i~-~lp~~i--~~L~~L~~L~L~~~~~~~~-lp---~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   73 (312)
                      +|++++|.+. ..|..+  +.+++|++|++++| .+.. .+   ...+..+++|++|++++|.+..              
T Consensus        95 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--------------  159 (310)
T 4glp_A           95 ELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPA--------------  159 (310)
T ss_dssp             EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC--------------
T ss_pred             EEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcch--------------
Confidence            4788999987 567777  99999999999999 6654 33   1224679999999999998854              


Q ss_pred             cchhhhccCCCCceEEEEEecChhhHHHH------hhcccccccceEEEEeecCCCccccchh-hhcCccccceEEeccC
Q 045137           74 EVLIQELLGLKYLEVLELTLGSYHALQIL------LSSNKLKSCIRSLYLYLTGDKKSIIDAT-AFTDLNHLNELWIDNG  146 (312)
Q Consensus        74 ~~~~~~l~~L~~L~~l~l~~~~~~~~~~l------~~l~~l~~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~  146 (312)
                       .....+..+++|+.|+++.+.......+      ..++    +|+.|+++++.-........ .+..+++|++|+++++
T Consensus       160 -~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~----~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          160 -FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP----AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             -CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC----CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             -hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC----CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence             3446678899999999998865332221      3444    78999998875432222212 3467899999999976


Q ss_pred             cCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCc
Q 045137          147 IELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHIS  226 (312)
Q Consensus       147 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (312)
                       .+.........      ....+++|++|++++| .++.+|... .++|++|++++|......              ...
T Consensus       235 -~l~~~~p~~~~------~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~l~~~~--------------~~~  291 (310)
T 4glp_A          235 -SLRATVNPSAP------RCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNRLNRAP--------------QPD  291 (310)
T ss_dssp             -CCCCCCCSCCS------SCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCCCCSCC--------------CTT
T ss_pred             -CCCccchhhHH------hccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCcCCCCc--------------hhh
Confidence             55544222111      0003479999999999 777877321 389999999998653321              235


Q ss_pred             cCCCcCeeeccccc
Q 045137          227 PFENLKSLDLSYLP  240 (312)
Q Consensus       227 ~~~~L~~L~l~~~~  240 (312)
                      .+++|+.|++++++
T Consensus       292 ~l~~L~~L~L~~N~  305 (310)
T 4glp_A          292 ELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCCSCEECSSTT
T ss_pred             hCCCccEEECcCCC
Confidence            67999999998864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.45  E-value=1.1e-13  Score=116.12  Aligned_cols=151  Identities=19%  Similarity=0.279  Sum_probs=111.7

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.+..++ ..|+.+++|++|++++| .+..+++..+..+++|++|++++|.+..++               ...
T Consensus        39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------~~~  102 (251)
T 3m19_A           39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLP---------------LGV  102 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCC---------------TTT
T ss_pred             EEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccC---------------hhH
Confidence            3789999999876 67999999999999999 888888877899999999999999886432               334


Q ss_pred             ccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137           80 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI  159 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  159 (312)
                      +..+++|+.|+++.+...                           .... ..+..+++|++|+++++ .+..+....+. 
T Consensus       103 ~~~l~~L~~L~L~~N~l~---------------------------~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-  152 (251)
T 3m19_A          103 FDHLTQLDKLYLGGNQLK---------------------------SLPS-GVFDRLTKLKELRLNTN-QLQSIPAGAFD-  152 (251)
T ss_dssp             TTTCTTCCEEECCSSCCC---------------------------CCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTT-
T ss_pred             hcccCCCCEEEcCCCcCC---------------------------CcCh-hHhccCCcccEEECcCC-cCCccCHHHcC-
Confidence            556666666666544321                           1111 24566778888888866 56655543333 


Q ss_pred             ccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeecccc
Q 045137          160 VRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAM  206 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~  206 (312)
                              .+++|++|++++| .+..++  .+..+++|++|++.+|...
T Consensus       153 --------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          153 --------KLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             --------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             --------cCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence                    6788899999888 676765  5777889999998887643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=3.7e-13  Score=109.60  Aligned_cols=146  Identities=18%  Similarity=0.246  Sum_probs=99.8

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++.+++.++.+|.++  .++|++|++++| .+..+++.+++.+++|++|++++|.+..++               ...+.
T Consensus        12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~   73 (208)
T 2o6s_A           12 VECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLP---------------NGVFN   73 (208)
T ss_dssp             EECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC---------------TTTTT
T ss_pred             EEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccC---------------hhhcC
Confidence            456777888888544  569999999999 888888877899999999999999875422               22344


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+++|+.|+++.+...                           ... ...+..+++|++|+++++ .+..+....+.   
T Consensus        74 ~l~~L~~L~Ls~n~l~---------------------------~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---  121 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQ---------------------------SLP-NGVFDKLTQLKELALNTN-QLQSLPDGVFD---  121 (208)
T ss_dssp             TCTTCCEEECCSSCCC---------------------------CCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred             CCCCcCEEECCCCcCC---------------------------ccC-HhHhcCccCCCEEEcCCC-cCcccCHhHhc---
Confidence            5556666655433221                           111 134566778888888765 45544433332   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeecc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~  204 (312)
                            .+++|++|++++| .+..++  .++.+++|++|++.+|.
T Consensus       122 ------~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          122 ------KLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             ------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ------cCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence                  6788888888887 666665  36778888888887774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.42  E-value=5.4e-13  Score=109.66  Aligned_cols=147  Identities=20%  Similarity=0.311  Sum_probs=104.7

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.++.+|..+.  ++|+.|++++| .+..+++..+..+++|++|++++|.+..               .....+.
T Consensus        16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~---------------~~~~~~~   77 (220)
T 2v9t_B           16 VDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISE---------------LAPDAFQ   77 (220)
T ss_dssp             EECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCE---------------ECTTTTT
T ss_pred             EEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCC---------------cCHHHhh
Confidence            5678888999987554  78999999999 8888887668999999999999998854               2334556


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+++|+.|+++.+...                           .... ..+..+++|++|+++++ .+..+....+.   
T Consensus        78 ~l~~L~~L~Ls~N~l~---------------------------~l~~-~~f~~l~~L~~L~L~~N-~l~~~~~~~~~---  125 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKIT---------------------------ELPK-SLFEGLFSLQLLLLNAN-KINCLRVDAFQ---  125 (220)
T ss_dssp             TCSSCCEEECCSSCCC---------------------------CCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred             CCcCCCEEECCCCcCC---------------------------ccCH-hHccCCCCCCEEECCCC-CCCEeCHHHcC---
Confidence            6666666666543321                           1111 34566778888888865 55555444443   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~  205 (312)
                            .+++|++|++++| .++.++  .+..+++|++|++.+++.
T Consensus       126 ------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          126 ------DLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             ------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ------CCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence                  6788888888888 666665  477788888888887754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.39  E-value=7.4e-14  Score=127.35  Aligned_cols=195  Identities=19%  Similarity=0.117  Sum_probs=96.7

Q ss_pred             cccCCCCCcccc--HHhhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEeccccccccc-----C------
Q 045137            2 LDISHTTIRELP--EELKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYE-----A------   63 (312)
Q Consensus         2 L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~-----~------   63 (312)
                      |+|+++.++..+  ..+..+++|++|++++| .+..     ++. ++..+++|++|++++|.+.....     .      
T Consensus         8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~   85 (461)
T 1z7x_W            8 LDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC   85 (461)
T ss_dssp             EEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred             hhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence            455666655433  22555666666666666 3442     222 24555666666666555432110     0      


Q ss_pred             -CCCccccCC--c----cchhhhccCCCCceEEEEEecChhh--HHHHhh-cccccccceEEEEeecCCCccc--cchhh
Q 045137           64 -PEDSVLFGG--G----EVLIQELLGLKYLEVLELTLGSYHA--LQILLS-SNKLKSCIRSLYLYLTGDKKSI--IDATA  131 (312)
Q Consensus        64 -~~~~~~~~~--~----~~~~~~l~~L~~L~~l~l~~~~~~~--~~~l~~-l~~l~~~L~~L~l~~~~~~~~~--~~~~~  131 (312)
                       ...+...+.  .    ......+..+++|+.|+++.+....  ...+.. +.....+|++|+++++.-....  .+...
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence             000000100  1    1235567778888888888665432  222221 1110115888888876432211  22345


Q ss_pred             hcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc-----CC-ccCCCCCCceEEEeecc
Q 045137          132 FTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-----ST-FLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       132 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~-~l~~l~~L~~L~l~~~~  204 (312)
                      +..+++|++|+++++. +.......+..  ... . ..++|++|++++| .++.     ++ .+..+++|++|++++|.
T Consensus       166 l~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~-~-~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          166 LRAKPDFKELTVSNND-INEAGVRVLCQ--GLK-D-SPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHCTTCCEEECCSSB-CHHHHHHHHHH--HHH-H-SCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HhhCCCCCEEECcCCC-cchHHHHHHHH--HHh-c-CCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            6667888888888763 43322221110  000 0 1347777777777 4444     22 34456777777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.39  E-value=2.2e-13  Score=120.60  Aligned_cols=237  Identities=14%  Similarity=0.066  Sum_probs=153.5

Q ss_pred             CcccCCCCCcccc-----HHhhCCC-CCcEEecCCCCCccccCchhhhcc-----ccccEEEEecccccccccCCCCccc
Q 045137            1 LLDISHTTIRELP-----EELKLLV-NLKCLNLRWTGALIRIPRGLISKF-----SRLRVLRMLGTGGFIFYEAPEDSVL   69 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-----~~i~~L~-~L~~L~L~~~~~~~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~   69 (312)
                      +|+|++|.++..+     +.++.++ +|++|+|++| .+.......+..+     ++|++|++++|.+...+.       
T Consensus        26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-------   97 (362)
T 3goz_A           26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS-------   97 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-------
T ss_pred             EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH-------
Confidence            4789999998776     6788898 9999999999 8887765557765     999999999998864221       


Q ss_pred             cCCccchhhhccCC-CCceEEEEEecChhh--HHHHhh-cccccccceEEEEeecCCCc--cccchhhhcCcc-ccceEE
Q 045137           70 FGGGEVLIQELLGL-KYLEVLELTLGSYHA--LQILLS-SNKLKSCIRSLYLYLTGDKK--SIIDATAFTDLN-HLNELW  142 (312)
Q Consensus        70 ~~~~~~~~~~l~~L-~~L~~l~l~~~~~~~--~~~l~~-l~~l~~~L~~L~l~~~~~~~--~~~~~~~l~~l~-~L~~L~  142 (312)
                          ......+..+ ++|+.|+++.+....  ...+.. +..+..+|+.|+++++.-..  ...+...+..++ +|++|+
T Consensus        98 ----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~  173 (362)
T 3goz_A           98 ----DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN  173 (362)
T ss_dssp             ----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             ----HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence                1222335556 789999998776532  222221 11111279999999764321  112234555565 999999


Q ss_pred             eccCcCcceeeeeccccccccCCCCcc-cccceEeecCCCCccc-----CC-ccCC-CCCCceEEEeeccccceecccCc
Q 045137          143 IDNGIELEELKIDYTEIVRKRREPFVF-HSLHLVTIYSCHKLKD-----ST-FLAF-APNLKSLSLFKCRAMEEIISVGK  214 (312)
Q Consensus       143 l~~~~~l~~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~-----l~-~l~~-l~~L~~L~l~~~~~~~~~~~~~~  214 (312)
                      ++++ .+.......+..  ...   .+ ++|++|++++| .+.+     ++ .+.. .++|++|++++|........   
T Consensus       174 Ls~n-~l~~~~~~~l~~--~l~---~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---  243 (362)
T 3goz_A          174 LRGN-NLASKNCAELAK--FLA---SIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE---  243 (362)
T ss_dssp             CTTS-CGGGSCHHHHHH--HHH---TSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH---
T ss_pred             ecCC-CCchhhHHHHHH--HHH---hCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH---
Confidence            9987 555444322110  000   33 59999999999 6776     33 3434 46999999999864332210   


Q ss_pred             cccCCCCCCCCccCCCcCeeeccccc-------cccccccCCcCCCCccEEEecCCC
Q 045137          215 IAENPEMMGHISPFENLKSLDLSYLP-------ELKSIFWKPLPFTHLKEMGVRACD  264 (312)
Q Consensus       215 ~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~L~~L~i~~c~  264 (312)
                           .+......+++|++|+++++.       .+..+......+++|+.|+++++.
T Consensus       244 -----~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          244 -----NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             -----HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             -----HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence                 001134567889999999874       133333344567778888888754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.39  E-value=4e-13  Score=126.33  Aligned_cols=41  Identities=12%  Similarity=0.045  Sum_probs=28.3

Q ss_pred             ccCCCcCeeecccccccccccc--CCcCCCCccEEEecCCCCCCC
Q 045137          226 SPFENLKSLDLSYLPELKSIFW--KPLPFTHLKEMGVRACDQLRK  268 (312)
Q Consensus       226 ~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~c~~L~~  268 (312)
                      ..+++|++|++++|+ ++....  ....+++|+.|++++|. ++.
T Consensus       485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            456888888888886 443221  13458889999999886 554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.38  E-value=1.4e-13  Score=122.84  Aligned_cols=200  Identities=16%  Similarity=0.104  Sum_probs=136.9

Q ss_pred             CcccCCCCCc----cccHHh-------hCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCC
Q 045137            1 LLDISHTTIR----ELPEEL-------KLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAP   64 (312)
Q Consensus         1 ~L~Ls~~~i~----~lp~~i-------~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~   64 (312)
                      +|+|++|.+.    .+|.++       +.+++|++|+|++| .+..     +|.. +..+++|++|++++|.+...+.  
T Consensus        64 ~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~--  139 (386)
T 2ca6_A           64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG--  139 (386)
T ss_dssp             EEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH--
T ss_pred             EEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH--
Confidence            3678887554    345555       78999999999999 6665     5554 8999999999999998853211  


Q ss_pred             CCccccCCccchhhhccCC---------CCceEEEEEecChh--hHH----HHhhcccccccceEEEEeecCCCccc--c
Q 045137           65 EDSVLFGGGEVLIQELLGL---------KYLEVLELTLGSYH--ALQ----ILLSSNKLKSCIRSLYLYLTGDKKSI--I  127 (312)
Q Consensus        65 ~~~~~~~~~~~~~~~l~~L---------~~L~~l~l~~~~~~--~~~----~l~~l~~l~~~L~~L~l~~~~~~~~~--~  127 (312)
                               ......+..+         ++|+.|+++.+...  .++    .+..++    +|+.|+++++......  .
T Consensus       140 ---------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~----~L~~L~L~~n~l~~~g~~~  206 (386)
T 2ca6_A          140 ---------AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR----LLHTVKMVQNGIRPEGIEH  206 (386)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT----TCCEEECCSSCCCHHHHHH
T ss_pred             ---------HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC----CcCEEECcCCCCCHhHHHH
Confidence                     0122234444         88999999877553  333    444556    8999999987433111  1


Q ss_pred             chh-hhcCccccceEEeccCcCcc-----eeeeeccccccccCCCCcccccceEeecCCCCcccC-----C-cc--CCCC
Q 045137          128 DAT-AFTDLNHLNELWIDNGIELE-----ELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS-----T-FL--AFAP  193 (312)
Q Consensus       128 ~~~-~l~~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~-~l--~~l~  193 (312)
                      ... .+..+++|++|+++++ .+.     .+. ..+.         .+++|++|++++| .+...     + .+  +.++
T Consensus       207 l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~-~~l~---------~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~  274 (386)
T 2ca6_A          207 LLLEGLAYCQELKVLDLQDN-TFTHLGSSALA-IALK---------SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENI  274 (386)
T ss_dssp             HHHTTGGGCTTCCEEECCSS-CCHHHHHHHHH-HHGG---------GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHhhcCCCccEEECcCC-CCCcHHHHHHH-HHHc---------cCCCcCEEECCCC-CCchhhHHHHHHHHhhccCC
Confidence            223 7778899999999987 443     222 1222         6899999999999 66653     3 44  4499


Q ss_pred             CCceEEEeeccccce---ecccCccccCCCCCCCC-ccCCCcCeeeccccc
Q 045137          194 NLKSLSLFKCRAMEE---IISVGKIAENPEMMGHI-SPFENLKSLDLSYLP  240 (312)
Q Consensus       194 ~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  240 (312)
                      +|++|++++|.....   .++           ... ..+++|++|++++++
T Consensus       275 ~L~~L~L~~n~i~~~g~~~l~-----------~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          275 GLQTLRLQYNEIELDAVRTLK-----------TVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CCCEEECCSSCCBHHHHHHHH-----------HHHHHHCTTCCEEECTTSB
T ss_pred             CeEEEECcCCcCCHHHHHHHH-----------HHHHhcCCCceEEEccCCc
Confidence            999999999875442   111           122 347999999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.38  E-value=2.6e-13  Score=110.50  Aligned_cols=146  Identities=20%  Similarity=0.273  Sum_probs=99.4

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|++++|.++.+| ..++.+++|++|++++| .+..+|..++..+++|++|++++|.+..++               ...
T Consensus        32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------~~~   95 (208)
T 2o6s_A           32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLP---------------NGV   95 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTT
T ss_pred             EEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccC---------------HhH
Confidence            4789999999887 45799999999999999 888998887899999999999999886422               233


Q ss_pred             ccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137           80 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI  159 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  159 (312)
                      +..+++|+.++++.+....+.                            ...+..+++|++|+++++ .+..+....+. 
T Consensus        96 ~~~l~~L~~L~L~~N~l~~~~----------------------------~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-  145 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQSLP----------------------------DGVFDKLTQLKDLRLYQN-QLKSVPDGVFD-  145 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC----------------------------TTTTTTCTTCCEEECCSS-CCSCCCTTTTT-
T ss_pred             hcCccCCCEEEcCCCcCcccC----------------------------HhHhccCCcCCEEECCCC-ccceeCHHHhc-
Confidence            556667777766544321111                            023455667777777764 44444333232 


Q ss_pred             ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecccc
Q 045137          160 VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAM  206 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~  206 (312)
                              .+++|++|++++|      ++.+.+++|+.|+++.+...
T Consensus       146 --------~l~~L~~L~l~~N------~~~~~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          146 --------RLTSLQYIWLHDN------PWDCTCPGIRYLSEWINKHS  178 (208)
T ss_dssp             --------TCTTCCEEECCSC------CBCCCTTTTHHHHHHHHHCT
T ss_pred             --------cCCCccEEEecCC------CeecCCCCHHHHHHHHHhCC
Confidence                    5677777777776      22345667777776665443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.37  E-value=2.6e-13  Score=120.08  Aligned_cols=172  Identities=19%  Similarity=0.277  Sum_probs=117.0

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhh-ccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLIS-KFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      ++++++.++.+|..+.  ..+++|+|++| .+..++...+. ++++|++|++++|.+..+               ....+
T Consensus        23 l~c~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i---------------~~~~~   84 (361)
T 2xot_A           23 LSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI---------------SSEAF   84 (361)
T ss_dssp             EECCSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEE---------------CTTTT
T ss_pred             EEeCCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCcc---------------Chhhc
Confidence            5778888999987554  46899999999 88888877676 899999999999988642               23456


Q ss_pred             cCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           81 LGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      ..+.+|+.|+++.+....++  .+..+.    +|+.|+++++... ... +..+..+++|+.|+++++ .+..++...+.
T Consensus        85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----~L~~L~L~~N~i~-~~~-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~  157 (361)
T 2xot_A           85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQ----ALEVLLLYNNHIV-VVD-RNAFEDMAQLQKLYLSQN-QISRFPVELIK  157 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCT----TCCEEECCSSCCC-EEC-TTTTTTCTTCCEEECCSS-CCCSCCGGGTC
T ss_pred             cCCCCCCEEECCCCcCCcCCHHHhCCCc----CCCEEECCCCccc-EEC-HHHhCCcccCCEEECCCC-cCCeeCHHHhc
Confidence            77888888888877654332  244455    7778877765432 221 246777788888888865 55555443321


Q ss_pred             cccccCCCCcccccceEeecCCCCcccCC--ccCCCCC--CceEEEeeccc
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPN--LKSLSLFKCRA  205 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~--L~~L~l~~~~~  205 (312)
                           ... .+++|+.|++++| .+..++  .+..++.  ++.|++.+|+.
T Consensus       158 -----~~~-~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          158 -----DGN-KLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             ----------CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             -----Ccc-cCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCc
Confidence                 000 5778888888887 676666  4555665  37788777653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.37  E-value=3.8e-14  Score=129.28  Aligned_cols=195  Identities=15%  Similarity=0.077  Sum_probs=94.4

Q ss_pred             cccCCCCCccc-cHHh-hCCC----CCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccC-------
Q 045137            2 LDISHTTIREL-PEEL-KLLV----NLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEA-------   63 (312)
Q Consensus         2 L~Ls~~~i~~l-p~~i-~~L~----~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~-------   63 (312)
                      |+|++|.+... +..+ ..++    +|++|++++| .+..     ++. .+..+++|++|++++|.+......       
T Consensus        61 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             EECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             EeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence            56666666542 2222 3344    5667777666 4442     233 256666666666666655421100       


Q ss_pred             -----CCCccccCC--cc----chhhhccCCCCceEEEEEecChhh--HHHHhh-cccccccceEEEEeecCCCccc--c
Q 045137           64 -----PEDSVLFGG--GE----VLIQELLGLKYLEVLELTLGSYHA--LQILLS-SNKLKSCIRSLYLYLTGDKKSI--I  127 (312)
Q Consensus        64 -----~~~~~~~~~--~~----~~~~~l~~L~~L~~l~l~~~~~~~--~~~l~~-l~~l~~~L~~L~l~~~~~~~~~--~  127 (312)
                           ...+.....  ..    .....+..+++|+.|+++.+....  ...+.. +.....+|+.|+++++.-....  .
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  218 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  218 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence                 000000000  00    123445556778888877665432  112211 0000116777877766432211  1


Q ss_pred             chhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc-----CC-ccCCCCCCceEEEe
Q 045137          128 DATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-----ST-FLAFAPNLKSLSLF  201 (312)
Q Consensus       128 ~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~-~l~~l~~L~~L~l~  201 (312)
                      +...+..+++|++|+++++ .+...+...+..  ... . .+++|++|++++| .++.     ++ .+..+++|++|+++
T Consensus       219 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~--~~~-~-~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls  292 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSN-KLGDVGMAELCP--GLL-H-PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLA  292 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSS-BCHHHHHHHHHH--HHT-S-TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             HHHHHHhCCCccEEeccCC-cCChHHHHHHHH--HHh-c-CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECC
Confidence            2345566777888888765 333322111100  000 0 3567777777777 5554     23 34446677777776


Q ss_pred             ecc
Q 045137          202 KCR  204 (312)
Q Consensus       202 ~~~  204 (312)
                      +|.
T Consensus       293 ~n~  295 (461)
T 1z7x_W          293 GNE  295 (461)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=3e-12  Score=105.20  Aligned_cols=148  Identities=16%  Similarity=0.225  Sum_probs=101.6

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCcccc-CchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRI-PRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      ++++++.++.+|..+.  ..+++|++++| .+..+ +.+++.++++|++|++++|.+..+               ....+
T Consensus        16 l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i---------------~~~~~   77 (220)
T 2v70_A           16 VDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDI---------------EEGAF   77 (220)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEE---------------CTTTT
T ss_pred             eEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEE---------------CHHHh
Confidence            6788888888887553  45689999999 77777 445678899999999998887542               22344


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ..+.+|+.|+++.+..                           ... ....+..+++|++|+++++ .+..+....+.  
T Consensus        78 ~~l~~L~~L~Ls~N~l---------------------------~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~--  126 (220)
T 2v70_A           78 EGASGVNEILLTSNRL---------------------------ENV-QHKMFKGLESLKTLMLRSN-RITCVGNDSFI--  126 (220)
T ss_dssp             TTCTTCCEEECCSSCC---------------------------CCC-CGGGGTTCSSCCEEECTTS-CCCCBCTTSST--
T ss_pred             CCCCCCCEEECCCCcc---------------------------Ccc-CHhHhcCCcCCCEEECCCC-cCCeECHhHcC--
Confidence            5555565555543322                           111 1135667788888888875 55555444333  


Q ss_pred             cccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeecccc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAM  206 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~  206 (312)
                             .+++|++|++++| .++.+ | .+..+++|++|++++|...
T Consensus       127 -------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          127 -------GLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             -------TCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             -------CCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence                   6788999999888 66665 4 6777888999988877643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.34  E-value=1e-12  Score=123.52  Aligned_cols=211  Identities=14%  Similarity=0.068  Sum_probs=100.5

Q ss_pred             cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEE
Q 045137           13 PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELT   92 (312)
Q Consensus        13 p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~   92 (312)
                      +..++.+++|+.|+++++ ....+|.. +..+++|++|++++|.+..              ......+..+++|+.|++.
T Consensus       263 ~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~--------------~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          263 YMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLET--------------EDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             SSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCH--------------HHHHHHHTTCTTCCEEEEE
T ss_pred             HHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCH--------------HHHHHHHHhCcCCCEEecc
Confidence            345566667777776665 44555553 5666677777776665421              1112334556666666665


Q ss_pred             ecCh--hhHHHH-hhcccccccceEEEEee----------cCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137           93 LGSY--HALQIL-LSSNKLKSCIRSLYLYL----------TGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI  159 (312)
Q Consensus        93 ~~~~--~~~~~l-~~l~~l~~~L~~L~l~~----------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  159 (312)
                       +..  ..++.+ ..++    +|++|++.+          +..............+++|++|++. ++.+.......+..
T Consensus       327 -~~~~~~~l~~~~~~~~----~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          327 -NVIGDRGLEVLAQYCK----QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGT  400 (592)
T ss_dssp             -GGGHHHHHHHHHHHCT----TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHH
T ss_pred             -CccCHHHHHHHHHhCC----CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHh
Confidence             211  111211 2233    566666663          4333333332333445666666663 33443332222210


Q ss_pred             ccccCCCCcccccceEeecC---CCCcccCC-------ccCCCCCCceEEEeeccc-cceecccCccccCCCCCCCCccC
Q 045137          160 VRKRREPFVFHSLHLVTIYS---CHKLKDST-------FLAFAPNLKSLSLFKCRA-MEEIISVGKIAENPEMMGHISPF  228 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~---~~~l~~l~-------~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  228 (312)
                              .+++|++|++++   |..+++.|       .+..+++|++|+++.|.. +.+...          ......+
T Consensus       401 --------~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----------~~~~~~~  462 (592)
T 3ogk_B          401 --------YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----------SYIGQYS  462 (592)
T ss_dssp             --------HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH----------HHHHHSC
T ss_pred             --------hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH----------HHHHHhC
Confidence                    356666666652   32444322       133366666666655442 111100          0011235


Q ss_pred             CCcCeeecccccccccccc--CCcCCCCccEEEecCCC
Q 045137          229 ENLKSLDLSYLPELKSIFW--KPLPFTHLKEMGVRACD  264 (312)
Q Consensus       229 ~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~c~  264 (312)
                      ++|++|.++++. +.....  ....+++|+.|++++|+
T Consensus       463 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          463 PNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             TTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             ccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence            666666666543 332111  12345666666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.33  E-value=1.6e-12  Score=109.92  Aligned_cols=144  Identities=15%  Similarity=0.138  Sum_probs=114.7

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|++++|.+..+| +++.+++|++|++++| .+..+++  +.++++|++|++++|.+..++                 .+
T Consensus        45 ~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~-----------------~~  103 (263)
T 1xeu_A           45 NFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLN-----------------GI  103 (263)
T ss_dssp             EEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCT-----------------TC
T ss_pred             EEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcC-----------------cc
Confidence            3789999999998 8999999999999999 8999887  999999999999999886432                 22


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      .. .+|+.|+++.+....++.+..++    +|+.|+++++.-. .  + ..+..+++|+.|+++++ .+..+  ..+.  
T Consensus       104 ~~-~~L~~L~L~~N~l~~~~~l~~l~----~L~~L~Ls~N~i~-~--~-~~l~~l~~L~~L~L~~N-~i~~~--~~l~--  169 (263)
T 1xeu_A          104 PS-ACLSRLFLDNNELRDTDSLIHLK----NLEILSIRNNKLK-S--I-VMLGFLSKLEVLDLHGN-EITNT--GGLT--  169 (263)
T ss_dssp             CC-SSCCEEECCSSCCSBSGGGTTCT----TCCEEECTTSCCC-B--C-GGGGGCTTCCEEECTTS-CCCBC--TTST--
T ss_pred             cc-CcccEEEccCCccCCChhhcCcc----cccEEECCCCcCC-C--C-hHHccCCCCCEEECCCC-cCcch--HHhc--
Confidence            33 78999999988776666677777    8999999876432 2  2 46788999999999986 55554  3333  


Q ss_pred             cccCCCCcccccceEeecCCCCcccCC
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDST  187 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~  187 (312)
                             .+++|+.|++++| .+...|
T Consensus       170 -------~l~~L~~L~l~~N-~~~~~~  188 (263)
T 1xeu_A          170 -------RLKKVNWIDLTGQ-KCVNEP  188 (263)
T ss_dssp             -------TCCCCCEEEEEEE-EEECCC
T ss_pred             -------cCCCCCEEeCCCC-cccCCc
Confidence                   7899999999998 555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.33  E-value=1.8e-12  Score=107.23  Aligned_cols=146  Identities=19%  Similarity=0.218  Sum_probs=102.4

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++.+++.+..+|.++.  ++|++|+|++| .+..+++..+..+++|++|++++|.+..++               ...+.
T Consensus        24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~---------------~~~~~   85 (229)
T 3e6j_A           24 VDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALP---------------VGVFD   85 (229)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTTTT
T ss_pred             eEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcC---------------hhhcc
Confidence            4667888888887554  89999999999 788876666899999999999999885422               23345


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+.+|+.|+++.+...                           ... ...+..+++|++|+++++ .+..++....    
T Consensus        86 ~l~~L~~L~Ls~N~l~---------------------------~l~-~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~----  132 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLT---------------------------VLP-SAVFDRLVHLKELFMCCN-KLTELPRGIE----  132 (229)
T ss_dssp             TCTTCCEEECCSSCCC---------------------------CCC-TTTTTTCTTCCEEECCSS-CCCSCCTTGG----
T ss_pred             cCCCcCEEECCCCcCC---------------------------ccC-hhHhCcchhhCeEeccCC-cccccCcccc----
Confidence            5666666666543321                           111 134566778888888865 5555543332    


Q ss_pred             ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~  205 (312)
                            .+++|++|++++| .+..++  .+..+++|+.|++.+++.
T Consensus       133 ------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          133 ------RLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             ------GCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             ------cCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence                  6788888888888 777766  467788888888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.31  E-value=3.7e-12  Score=118.75  Aligned_cols=180  Identities=14%  Similarity=0.024  Sum_probs=83.0

Q ss_pred             CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHH
Q 045137           21 NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ  100 (312)
Q Consensus        21 ~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~  100 (312)
                      +|++|++++| .+..+|.. +  +++|++|++++|.+..+|                   ..+++|+.|+++.+....++
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~-l--~~~L~~L~Ls~N~l~~ip-------------------~~l~~L~~L~Ls~N~l~~ip  116 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDN-L--PPQITVLEITQNALISLP-------------------ELPASLEYLDACDNRLSTLP  116 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSC-C--CTTCSEEECCSSCCSCCC-------------------CCCTTCCEEECCSSCCSCCC
T ss_pred             CccEEEeCCC-CCCccCHh-H--cCCCCEEECcCCCCcccc-------------------cccCCCCEEEccCCCCCCcc
Confidence            5666666665 45555554 2  245666666665553211                   22345555555544433322


Q ss_pred             HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCC
Q 045137          101 ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSC  180 (312)
Q Consensus       101 ~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  180 (312)
                      .   +.   .+|+.|+++++....   ++.   .+++|+.|+++++ .++.++.             .+++|+.|++++|
T Consensus       117 ~---l~---~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N-~l~~lp~-------------~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          117 E---LP---ASLKHLDVDNNQLTM---LPE---LPALLEYINADNN-QLTMLPE-------------LPTSLEVLSVRNN  170 (571)
T ss_dssp             C---CC---TTCCEEECCSSCCSC---CCC---CCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSS
T ss_pred             h---hh---cCCCEEECCCCcCCC---CCC---cCccccEEeCCCC-ccCcCCC-------------cCCCcCEEECCCC
Confidence            2   11   145555555542211   111   3455666666544 3332221             2456666666666


Q ss_pred             CCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCC-CccCCCcCeeeccccccccccccCCcCCCCccEEE
Q 045137          181 HKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGH-ISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMG  259 (312)
Q Consensus       181 ~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  259 (312)
                       .++.+|.+.  ++|++|++++|... .+ +        .+... ....+.|+.|+++++ .++.++.....+++|+.|+
T Consensus       171 -~L~~lp~l~--~~L~~L~Ls~N~L~-~l-p--------~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~  236 (571)
T 3cvr_A          171 -QLTFLPELP--ESLEALDVSTNLLE-SL-P--------AVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTII  236 (571)
T ss_dssp             -CCSCCCCCC--TTCCEEECCSSCCS-SC-C--------CCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEE
T ss_pred             -CCCCcchhh--CCCCEEECcCCCCC-ch-h--------hHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEE
Confidence             455555432  56666666655322 21 1        00000 000111266666553 4555554444566666666


Q ss_pred             ecCC
Q 045137          260 VRAC  263 (312)
Q Consensus       260 i~~c  263 (312)
                      ++++
T Consensus       237 L~~N  240 (571)
T 3cvr_A          237 LEDN  240 (571)
T ss_dssp             CCSS
T ss_pred             eeCC
Confidence            6654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.31  E-value=7.5e-15  Score=137.21  Aligned_cols=208  Identities=13%  Similarity=0.023  Sum_probs=128.4

Q ss_pred             hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc-cccccCCCCccccCCccchhhhccCCCCceEEE-EEec
Q 045137           17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG-FIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLE-LTLG   94 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~-l~~~   94 (312)
                      ...++|+.|+|++| .+..+|.. +++|++|+.|++++|.. ..++.-...   .......+..++.+++|+.++ ++.+
T Consensus       346 ~~~~~L~~L~Ls~n-~L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~---~~~~~~~~~~l~~l~~L~~L~~l~~n  420 (567)
T 1dce_A          346 ATDEQLFRCELSVE-KSTVLQSE-LESCKELQELEPENKWCLLTIILLMRA---LDPLLYEKETLQYFSTLKAVDPMRAA  420 (567)
T ss_dssp             STTTTSSSCCCCHH-HHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHH---HCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             ccCccceeccCChh-hHHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHh---cccccCCHHHHHHHHhcccCcchhhc
Confidence            45677778888887 67777776 77888888877755431 000000000   000112233444455555444 2222


Q ss_pred             ChhhHH-------HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCC
Q 045137           95 SYHALQ-------ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPF  167 (312)
Q Consensus        95 ~~~~~~-------~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  167 (312)
                      ....++       .+..++.  ..++.|+++++.-..   + +.++.+++|+.|+++++ .+..++....          
T Consensus       421 ~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~---l-p~~~~l~~L~~L~Ls~N-~l~~lp~~~~----------  483 (567)
T 1dce_A          421 YLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTV---L-CHLEQLLLVTHLDLSHN-RLRALPPALA----------  483 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSS---C-CCGGGGTTCCEEECCSS-CCCCCCGGGG----------
T ss_pred             ccchhhhhhhhcccccccCc--cCceEEEecCCCCCC---C-cCccccccCcEeecCcc-cccccchhhh----------
Confidence            211111       1112111  157888888763322   3 23888999999999976 5666554332          


Q ss_pred             cccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccccc
Q 045137          168 VFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFW  247 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  247 (312)
                      .+++|+.|++++| .++.+|.++.+++|+.|++++|.......+           .....+++|+.|+++++ .++..+.
T Consensus       484 ~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p-----------~~l~~l~~L~~L~L~~N-~l~~~~~  550 (567)
T 1dce_A          484 ALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNRLQQSAAI-----------QPLVSCPRLVLLNLQGN-SLCQEEG  550 (567)
T ss_dssp             GCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSCCCSSSTT-----------GGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred             cCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCCCCCCCCc-----------HHHhcCCCCCEEEecCC-cCCCCcc
Confidence            7899999999999 788889899999999999998864332101           24567899999999986 4666554


Q ss_pred             CC----cCCCCccEEE
Q 045137          248 KP----LPFTHLKEMG  259 (312)
Q Consensus       248 ~~----~~~~~L~~L~  259 (312)
                      ..    ..+|+|+.|+
T Consensus       551 ~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          551 IQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CTTHHHHHCTTCSEEE
T ss_pred             HHHHHHHHCcccCccC
Confidence            32    2378888875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=2.1e-13  Score=127.44  Aligned_cols=86  Identities=13%  Similarity=0.085  Sum_probs=44.7

Q ss_pred             cccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccc-
Q 045137          168 VFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSI-  245 (312)
Q Consensus       168 ~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-  245 (312)
                      .+++|+.|++++| .++.+| .++.+++|+.|++++|.... + +            ..+.+++|+.|+++++ .++.+ 
T Consensus       461 ~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~-l-p------------~l~~l~~L~~L~Ls~N-~l~~~~  524 (567)
T 1dce_A          461 QLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALEN-V-D------------GVANLPRLQELLLCNN-RLQQSA  524 (567)
T ss_dssp             GGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCC-C-G------------GGTTCSSCCEEECCSS-CCCSSS
T ss_pred             ccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCC-C-c------------ccCCCCCCcEEECCCC-CCCCCC
Confidence            5556666666665 455555 45556666666665554221 1 1            2244556666666553 34444 


Q ss_pred             -ccCCcCCCCccEEEecCCCCCCCCC
Q 045137          246 -FWKPLPFTHLKEMGVRACDQLRKLP  270 (312)
Q Consensus       246 -~~~~~~~~~L~~L~i~~c~~L~~l~  270 (312)
                       +.....+++|+.|+++++ .++.+|
T Consensus       525 ~p~~l~~l~~L~~L~L~~N-~l~~~~  549 (567)
T 1dce_A          525 AIQPLVSCPRLVLLNLQGN-SLCQEE  549 (567)
T ss_dssp             TTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred             CcHHHhcCCCCCEEEecCC-cCCCCc
Confidence             333445666666666653 344444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=1.4e-11  Score=114.79  Aligned_cols=172  Identities=17%  Similarity=0.117  Sum_probs=123.0

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|+|++|.++.+|..+  +++|++|+|++| .+..+|    ..+++|++|++++|.+..+|.                 +
T Consensus        63 ~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-----------------l  118 (571)
T 3cvr_A           63 ELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE-----------------L  118 (571)
T ss_dssp             EEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC-----------------C
T ss_pred             EEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch-----------------h
Confidence            3789999999999766  489999999999 888888    347899999999998865331                 2


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ..  +|+.|+++.+....++.  .++    +|+.|+++++....   ++.   .+++|++|+++++ .+..++.  +   
T Consensus       119 ~~--~L~~L~Ls~N~l~~lp~--~l~----~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N-~L~~lp~--l---  178 (571)
T 3cvr_A          119 PA--SLKHLDVDNNQLTMLPE--LPA----LLEYINADNNQLTM---LPE---LPTSLEVLSVRNN-QLTFLPE--L---  178 (571)
T ss_dssp             CT--TCCEEECCSSCCSCCCC--CCT----TCCEEECCSSCCSC---CCC---CCTTCCEEECCSS-CCSCCCC--C---
T ss_pred             hc--CCCEEECCCCcCCCCCC--cCc----cccEEeCCCCccCc---CCC---cCCCcCEEECCCC-CCCCcch--h---
Confidence            22  78888888776655443  334    78999988764322   212   4678999999876 5555443  2   


Q ss_pred             cccCCCCcccccceEeecCCCCcccCCccCCCCCC-------ceEEEeeccccceecccCccccCCCCCCCCccCCCcCe
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNL-------KSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKS  233 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  233 (312)
                             . ++|+.|++++| .++.+|.+..  +|       +.|++++|... .+ +           .....+++|+.
T Consensus       179 -------~-~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~l-p-----------~~l~~l~~L~~  234 (571)
T 3cvr_A          179 -------P-ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCRENRIT-HI-P-----------ENILSLDPTCT  234 (571)
T ss_dssp             -------C-TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSCCC-CC-C-----------GGGGGSCTTEE
T ss_pred             -------h-CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCCcce-ec-C-----------HHHhcCCCCCE
Confidence                   4 78999999998 7777776333  66       99999888643 22 1           13345889999


Q ss_pred             eeccccc
Q 045137          234 LDLSYLP  240 (312)
Q Consensus       234 L~l~~~~  240 (312)
                      |++++++
T Consensus       235 L~L~~N~  241 (571)
T 3cvr_A          235 IILEDNP  241 (571)
T ss_dssp             EECCSSS
T ss_pred             EEeeCCc
Confidence            9998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.20  E-value=5.9e-12  Score=111.29  Aligned_cols=148  Identities=21%  Similarity=0.164  Sum_probs=110.2

Q ss_pred             CcccCCCCCcccc-HHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137            1 LLDISHTTIRELP-EELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|+|++|.++.++ ..+. .+++|++|+|++| .+..+++..+.++++|++|++++|.+..+               ...
T Consensus        43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~  106 (361)
T 2xot_A           43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTL---------------DEF  106 (361)
T ss_dssp             EEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEE---------------CTT
T ss_pred             EEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcC---------------CHH
Confidence            3789999999987 4466 9999999999999 89999877799999999999999988653               234


Q ss_pred             hccCCCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhh---cCccccceEEeccCcCcceee
Q 045137           79 ELLGLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAF---TDLNHLNELWIDNGIELEELK  153 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~l~~l~  153 (312)
                      .+..+.+|+.|+++.+....+  ..+..++    +|+.|+++++.-.. ... ..+   ..+++|+.|+++++ .+..++
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~----~L~~L~L~~N~l~~-l~~-~~~~~~~~l~~L~~L~L~~N-~l~~l~  179 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMA----QLQKLYLSQNQISR-FPV-ELIKDGNKLPKLMLLDLSSN-KLKKLP  179 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCT----TCCEEECCSSCCCS-CCG-GGTC----CTTCCEEECCSS-CCCCCC
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcc----cCCEEECCCCcCCe-eCH-HHhcCcccCCcCCEEECCCC-CCCccC
Confidence            567889999999987766433  2455566    89999998764322 211 223   56889999999976 666665


Q ss_pred             eeccccccccCCCCcccc--cceEeecCC
Q 045137          154 IDYTEIVRKRREPFVFHS--LHLVTIYSC  180 (312)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~--L~~L~l~~~  180 (312)
                      ...+.         .++.  ++.|++.+|
T Consensus       180 ~~~~~---------~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          180 LTDLQ---------KLPAWVKNGLYLHNN  199 (361)
T ss_dssp             HHHHH---------HSCHHHHTTEECCSS
T ss_pred             HHHhh---------hccHhhcceEEecCC
Confidence            44443         4555  478888887

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.19  E-value=2.1e-11  Score=100.78  Aligned_cols=125  Identities=22%  Similarity=0.256  Sum_probs=91.1

Q ss_pred             CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.+..+ |..|+.+++|++|+|++| .+..+|..++..+++|++|++++|.+..++               ...
T Consensus        44 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~---------------~~~  107 (229)
T 3e6j_A           44 ILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLP---------------SAV  107 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTT
T ss_pred             EEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccC---------------hhH
Confidence            478999999987 588999999999999999 889999887899999999999999886422               233


Q ss_pred             ccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137           80 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI  159 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  159 (312)
                      +..+.+|+.|+++.+...                             .++..+..+++|++|+++++ .+..+....+. 
T Consensus       108 ~~~l~~L~~L~Ls~N~l~-----------------------------~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-  156 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKLT-----------------------------ELPRGIERLTHLTHLALDQN-QLKSIPHGAFD-  156 (229)
T ss_dssp             TTTCTTCCEEECCSSCCC-----------------------------SCCTTGGGCTTCSEEECCSS-CCCCCCTTTTT-
T ss_pred             hCcchhhCeEeccCCccc-----------------------------ccCcccccCCCCCEEECCCC-cCCccCHHHHh-
Confidence            456666776666544321                             11234566677777887765 55555443333 


Q ss_pred             ccccCCCCcccccceEeecCC
Q 045137          160 VRKRREPFVFHSLHLVTIYSC  180 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~~  180 (312)
                              .+++|+.|++.+|
T Consensus       157 --------~l~~L~~L~l~~N  169 (229)
T 3e6j_A          157 --------RLSSLTHAYLFGN  169 (229)
T ss_dssp             --------TCTTCCEEECTTS
T ss_pred             --------CCCCCCEEEeeCC
Confidence                    6778888888777

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=6.4e-11  Score=92.80  Aligned_cols=131  Identities=17%  Similarity=0.265  Sum_probs=86.2

Q ss_pred             hCCCCCcEEecCCCCCcc--ccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEec
Q 045137           17 KLLVNLKCLNLRWTGALI--RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG   94 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~--~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~   94 (312)
                      ...++|++|++++| .+.  .+|.. +..+++|++|++++|.+..                 +..+..+++|+.|+++.+
T Consensus        21 ~~~~~L~~L~l~~n-~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~-----------------~~~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           21 RTPAAVRELVLDNC-KSNDGKIEGL-TAEFVNLEFLSLINVGLIS-----------------VSNLPKLPKLKKLELSEN   81 (168)
T ss_dssp             SCTTSCSEEECCSC-BCBTTBCSSC-CGGGGGCCEEEEESSCCCC-----------------CSSCCCCSSCCEEEEESC
T ss_pred             CCcccCCEEECCCC-CCChhhHHHH-HHhCCCCCEEeCcCCCCCC-----------------hhhhccCCCCCEEECcCC
Confidence            45689999999999 677  78875 8999999999999998742                 155666677777777655


Q ss_pred             ChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee-eccccccccCCCCcccccc
Q 045137           95 SYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI-DYTEIVRKRREPFVFHSLH  173 (312)
Q Consensus        95 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~L~  173 (312)
                      ....                          .  .+..+..+++|++|+++++ .+..++. ..+.         .+++|+
T Consensus        82 ~l~~--------------------------~--~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~---------~l~~L~  123 (168)
T 2ell_A           82 RIFG--------------------------G--LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLK---------KLECLK  123 (168)
T ss_dssp             CCCS--------------------------C--CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGS---------SCSCCC
T ss_pred             cCch--------------------------H--HHHHHhhCCCCCEEeccCC-ccCcchhHHHHh---------cCCCCC
Confidence            4322                          0  1123344566666666655 3443321 2222         567777


Q ss_pred             eEeecCCCCcccCC-----ccCCCCCCceEEEeeccc
Q 045137          174 LVTIYSCHKLKDST-----FLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       174 ~L~l~~~~~l~~l~-----~l~~l~~L~~L~l~~~~~  205 (312)
                      +|++++| .+..++     .+..+++|++|++.+|..
T Consensus       124 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          124 SLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            7777777 555544     356677788887777754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.16  E-value=6.9e-12  Score=117.93  Aligned_cols=209  Identities=14%  Similarity=0.127  Sum_probs=104.2

Q ss_pred             ccHHhhCCCCCcEEecCCCCCcccc-CchhhhccccccEEEEecccccccccCCCCccccCCccchhhh-ccCCCCceEE
Q 045137           12 LPEELKLLVNLKCLNLRWTGALIRI-PRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE-LLGLKYLEVL   89 (312)
Q Consensus        12 lp~~i~~L~~L~~L~L~~~~~~~~l-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~l   89 (312)
                      +|..+..+++|++|++++|. +..- ...++..+++|++|++.+| +..               ..+.. ...+++|+.|
T Consensus       281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~---------------~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IED---------------AGLEVLASTCKDLREL  343 (594)
T ss_dssp             GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHH---------------HHHHHHHHHCTTCCEE
T ss_pred             HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCH---------------HHHHHHHHhCCCCCEE
Confidence            44444456677777777663 4321 1222456667777777666 221               11221 2235566666


Q ss_pred             EEEe---------cCh--hhHHHHh-hcccccccceEEEEeecCCCccccchhhhcCccccceEEec-----cCcCccee
Q 045137           90 ELTL---------GSY--HALQILL-SSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWID-----NGIELEEL  152 (312)
Q Consensus        90 ~l~~---------~~~--~~~~~l~-~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~-----~~~~l~~l  152 (312)
                      ++..         +..  ..+..+. .++    +|+.|.+. +..............+++|+.|++.     +|+.++..
T Consensus       344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~----~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          344 RVFPSEPFVMEPNVALTEQGLVSVSMGCP----KLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             EEECSCTTCSSCSSCCCHHHHHHHHHHCT----TCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             EEecCcccccccCCCCCHHHHHHHHHhch----hHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            6632         111  1122221 233    56666443 2233332221222245667777776     33444422


Q ss_pred             eee----c-cccccccCCCCcccccceEeecCCCCccc--CCccCC-CCCCceEEEeeccccceecccCccccCCCCCCC
Q 045137          153 KID----Y-TEIVRKRREPFVFHSLHLVTIYSCHKLKD--STFLAF-APNLKSLSLFKCRAMEEIISVGKIAENPEMMGH  224 (312)
Q Consensus       153 ~~~----~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (312)
                      +..    . ..         .+++|+.|++++  .+.+  ++.++. +++|+.|++++|......+.           .-
T Consensus       419 ~~~~~~~~l~~---------~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l  476 (594)
T 2p1m_B          419 PLDIGFGAIVE---------HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HV  476 (594)
T ss_dssp             CTHHHHHHHHH---------HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HH
T ss_pred             chhhHHHHHHh---------hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HH
Confidence            110    0 11         566777777755  3333  223443 67788888877753222111           01


Q ss_pred             CccCCCcCeeecccccccccccc--CCcCCCCccEEEecCCCC
Q 045137          225 ISPFENLKSLDLSYLPELKSIFW--KPLPFTHLKEMGVRACDQ  265 (312)
Q Consensus       225 ~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~c~~  265 (312)
                      ...+++|++|++++|+. .....  ....+++|+.|++++|+.
T Consensus       477 ~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          477 LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            13478888888888764 33222  134578888888888864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.14  E-value=3.7e-11  Score=98.62  Aligned_cols=125  Identities=17%  Similarity=0.246  Sum_probs=89.8

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |+|++|.|..+| ..|+.+++|++|+|++| .+..+++..+.++++|++|++++|.+..+|               ...+
T Consensus        37 L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------------~~~f  100 (220)
T 2v9t_B           37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELP---------------KSLF  100 (220)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCC---------------TTTT
T ss_pred             EECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccC---------------HhHc
Confidence            789999999887 57999999999999999 888886656999999999999999886533               2234


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ..+.+|+.|+++.+....                           .. +..+..+++|++|+++++ .+..+....+.  
T Consensus       101 ~~l~~L~~L~L~~N~l~~---------------------------~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~--  149 (220)
T 2v9t_B          101 EGLFSLQLLLLNANKINC---------------------------LR-VDAFQDLHNLNLLSLYDN-KLQTIAKGTFS--  149 (220)
T ss_dssp             TTCTTCCEEECCSSCCCC---------------------------CC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTT--
T ss_pred             cCCCCCCEEECCCCCCCE---------------------------eC-HHHcCCCCCCCEEECCCC-cCCEECHHHHh--
Confidence            556666666665443211                           10 135566677777777765 45555444333  


Q ss_pred             cccCCCCcccccceEeecCC
Q 045137          161 RKRREPFVFHSLHLVTIYSC  180 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~  180 (312)
                             .+++|+.|++++|
T Consensus       150 -------~l~~L~~L~L~~N  162 (220)
T 2v9t_B          150 -------PLRAIQTMHLAQN  162 (220)
T ss_dssp             -------TCTTCCEEECCSS
T ss_pred             -------CCCCCCEEEeCCC
Confidence                   5777888888777

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.14  E-value=2.8e-11  Score=99.40  Aligned_cols=126  Identities=16%  Similarity=0.192  Sum_probs=91.0

Q ss_pred             CcccCCCCCcccc--HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137            1 LLDISHTTIRELP--EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|+|++|.++.++  ..|+.+++|++|+|++| .+..+++..+.++++|++|++++|.+..+               ...
T Consensus        36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~   99 (220)
T 2v70_A           36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENV---------------QHK   99 (220)
T ss_dssp             EEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCC---------------CGG
T ss_pred             EEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCcc---------------CHh
Confidence            3789999999884  45899999999999999 89999887799999999999999988642               233


Q ss_pred             hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      .+..+++|+.|+++.+....                           . .+..+..+++|++|+++++ .+..+....+.
T Consensus       100 ~~~~l~~L~~L~Ls~N~l~~---------------------------~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  150 (220)
T 2v70_A          100 MFKGLESLKTLMLRSNRITC---------------------------V-GNDSFIGLSSVRLLSLYDN-QITTVAPGAFD  150 (220)
T ss_dssp             GGTTCSSCCEEECTTSCCCC---------------------------B-CTTSSTTCTTCSEEECTTS-CCCCBCTTTTT
T ss_pred             HhcCCcCCCEEECCCCcCCe---------------------------E-CHhHcCCCccCCEEECCCC-cCCEECHHHhc
Confidence            45566666666665433211                           1 0134566777888888765 55555444443


Q ss_pred             cccccCCCCcccccceEeecCC
Q 045137          159 IVRKRREPFVFHSLHLVTIYSC  180 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~  180 (312)
                               .+++|+.|++++|
T Consensus       151 ---------~l~~L~~L~L~~N  163 (220)
T 2v70_A          151 ---------TLHSLSTLNLLAN  163 (220)
T ss_dssp             ---------TCTTCCEEECCSC
T ss_pred             ---------CCCCCCEEEecCc
Confidence                     6778888888877

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.14  E-value=1.2e-11  Score=116.38  Aligned_cols=223  Identities=13%  Similarity=0.060  Sum_probs=135.0

Q ss_pred             cccCCC-CCccccHHhhCCCCCcEEecCCCC------------------------------CccccCchhhhccccccEE
Q 045137            2 LDISHT-TIRELPEELKLLVNLKCLNLRWTG------------------------------ALIRIPRGLISKFSRLRVL   50 (312)
Q Consensus         2 L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~------------------------------~~~~lp~~~i~~l~~L~~L   50 (312)
                      |++++| .+..+|..++.+++|++|+++.+.                              ....++. .+..+++|++|
T Consensus       216 L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L  294 (594)
T 2p1m_B          216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTL  294 (594)
T ss_dssp             EECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEE
T ss_pred             EecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HHHhhCCCCEE
Confidence            567776 555677777788888888765441                              1112232 23467888888


Q ss_pred             EEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecCh-hhHHHHh-hcccccccceEEEEeec--------
Q 045137           51 RMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY-HALQILL-SSNKLKSCIRSLYLYLT--------  120 (312)
Q Consensus        51 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~-~~~~~l~-~l~~l~~~L~~L~l~~~--------  120 (312)
                      ++++|.+..              ......+..+++|+.|++..+-. ..+..+. .++    +|+.|++..+        
T Consensus       295 ~L~~~~l~~--------------~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~----~L~~L~L~~~~~~g~~~~  356 (594)
T 2p1m_B          295 NLSYATVQS--------------YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK----DLRELRVFPSEPFVMEPN  356 (594)
T ss_dssp             ECTTCCCCH--------------HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT----TCCEEEEECSCTTCSSCS
T ss_pred             EccCCCCCH--------------HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC----CCCEEEEecCcccccccC
Confidence            888887532              12233356788999999985511 1222222 244    7999999543        


Q ss_pred             CCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeec-----CCCCcccCCc-------
Q 045137          121 GDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIY-----SCHKLKDSTF-------  188 (312)
Q Consensus       121 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~l~~l~~-------  188 (312)
                      ..............+++|++|.+. ++.+..........        .+++|+.|+++     +|..+++.|.       
T Consensus       357 ~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~--------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l  427 (594)
T 2p1m_B          357 VALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIAR--------NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI  427 (594)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHH--------HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred             CCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHh--------hCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence            222333332233447889999664 44555433333321        57899999999     5556764432       


Q ss_pred             cCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccC--CcCCCCccEEEecCCCC
Q 045137          189 LAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWK--PLPFTHLKEMGVRACDQ  265 (312)
Q Consensus       189 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~i~~c~~  265 (312)
                      +..+++|+.|++.+  .+.+....          .-...+++|++|++++|. +......  ...+++|+.|++++|+-
T Consensus       428 ~~~~~~L~~L~L~~--~l~~~~~~----------~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG--LLTDKVFE----------YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHCTTCCEEECCS--SCCHHHHH----------HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             HhhCCCccEEeecC--cccHHHHH----------HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            45689999999966  23322110          011237899999999875 4332221  24589999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.10  E-value=3.5e-11  Score=94.33  Aligned_cols=131  Identities=20%  Similarity=0.184  Sum_probs=87.8

Q ss_pred             CcccCCCCCc--cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137            1 LLDISHTTIR--ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|++++|.+.  .+|..++.+++|++|++++| .+..+ .. +..+++|++|++++|.+..               ....
T Consensus        28 ~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~N~l~~---------------~~~~   89 (168)
T 2ell_A           28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SN-LPKLPKLKKLELSENRIFG---------------GLDM   89 (168)
T ss_dssp             EEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SS-CCCCSSCCEEEEESCCCCS---------------CCCH
T ss_pred             EEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hh-hccCCCCCEEECcCCcCch---------------HHHH
Confidence            3789999998  89988999999999999999 78888 33 8999999999999998853               1222


Q ss_pred             hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee---e
Q 045137           79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI---D  155 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~---~  155 (312)
                      .+..+++|+.|+++.+...                           .......+..+++|++|+++++ .+..++.   .
T Consensus        90 ~~~~l~~L~~L~Ls~N~l~---------------------------~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~  141 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGNKLK---------------------------DISTLEPLKKLECLKSLDLFNC-EVTNLNDYRES  141 (168)
T ss_dssp             HHHHCTTCCEEECBSSSCC---------------------------SSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHH
T ss_pred             HHhhCCCCCEEeccCCccC---------------------------cchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHH
Confidence            2333555555555433221                           1111145566677777777765 3443332   1


Q ss_pred             ccccccccCCCCcccccceEeecCCCCcccCC
Q 045137          156 YTEIVRKRREPFVFHSLHLVTIYSCHKLKDST  187 (312)
Q Consensus       156 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  187 (312)
                      .+.         .+++|++|++++| ....+|
T Consensus       142 ~~~---------~l~~L~~L~l~~n-~~~~~~  163 (168)
T 2ell_A          142 VFK---------LLPQLTYLDGYDR-EDQEAP  163 (168)
T ss_dssp             HHT---------TCSSCCEETTEET-TSCBCC
T ss_pred             HHH---------hCccCcEecCCCC-Chhhcc
Confidence            222         6778888888777 555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.10  E-value=3.8e-11  Score=92.17  Aligned_cols=128  Identities=21%  Similarity=0.202  Sum_probs=82.3

Q ss_pred             CCCCCcEEecCCCCCcc--ccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137           18 LLVNLKCLNLRWTGALI--RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS   95 (312)
Q Consensus        18 ~L~~L~~L~L~~~~~~~--~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~   95 (312)
                      ..++|++|++++| .+.  .+|.. +..+++|++|++++|.+..                 +..+..+++|+.++++.+.
T Consensus        15 ~~~~l~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~-----------------~~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           15 TPSDVKELVLDNS-RSNEGKLEGL-TDEFEELEFLSTINVGLTS-----------------IANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             CGGGCSEEECTTC-BCBTTBCCSC-CTTCTTCCEEECTTSCCCC-----------------CTTCCCCTTCCEEECCSSC
T ss_pred             CCccCeEEEccCC-cCChhHHHHH-HhhcCCCcEEECcCCCCCC-----------------chhhhcCCCCCEEECCCCc
Confidence            3467777777777 555  56663 6777777777777776642                 1556667777777777665


Q ss_pred             hhh-HHHH-hhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee---eccccccccCCCCccc
Q 045137           96 YHA-LQIL-LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI---DYTEIVRKRREPFVFH  170 (312)
Q Consensus        96 ~~~-~~~l-~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~~~~~~~~~~~~~  170 (312)
                      ... ++.. ..++    +|+.|+++++.- .....+..+..+++|++|+++++ .+...+.   ..+.         .++
T Consensus        76 i~~~~~~~~~~l~----~L~~L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~---------~l~  140 (149)
T 2je0_A           76 VSGGLEVLAEKCP----NLTHLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFK---------LLP  140 (149)
T ss_dssp             CCSCTHHHHHHCT----TCCEEECTTSCC-CSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHH---------HCT
T ss_pred             ccchHHHHhhhCC----CCCEEECCCCcC-CChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHH---------HCC
Confidence            543 3433 3456    788888877643 22222256778888999999876 4554433   2232         678


Q ss_pred             ccceEeecC
Q 045137          171 SLHLVTIYS  179 (312)
Q Consensus       171 ~L~~L~l~~  179 (312)
                      +|++|++++
T Consensus       141 ~L~~L~l~d  149 (149)
T 2je0_A          141 QLTYLDGYD  149 (149)
T ss_dssp             TCCEETTBC
T ss_pred             CcccccCCC
Confidence            888887753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.09  E-value=2.1e-11  Score=98.35  Aligned_cols=90  Identities=20%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             CCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCce
Q 045137            8 TIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLE   87 (312)
Q Consensus         8 ~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~   87 (312)
                      .++.+|..++.+++|++|++++| .+..+| . +.++++|++|++++|.+..+|                ..+..+++|+
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~----------------~~~~~~~~L~   96 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRNLIKKIE----------------NLDAVADTLE   96 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEEEECSCS----------------SHHHHHHHCS
T ss_pred             cHhhhhHHHhcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCCCccccc----------------chhhcCCcCC
Confidence            45566668888888888888888 777777 3 888888888888888765322                1223334555


Q ss_pred             EEEEEecChhhHHHHhhcccccccceEEEEeec
Q 045137           88 VLELTLGSYHALQILLSSNKLKSCIRSLYLYLT  120 (312)
Q Consensus        88 ~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~  120 (312)
                      .|+++.+....++.+..++    +|+.|+++++
T Consensus        97 ~L~L~~N~l~~l~~~~~l~----~L~~L~l~~N  125 (198)
T 1ds9_A           97 ELWISYNQIASLSGIEKLV----NLRVLYMSNN  125 (198)
T ss_dssp             EEEEEEEECCCHHHHHHHH----HSSEEEESEE
T ss_pred             EEECcCCcCCcCCccccCC----CCCEEECCCC
Confidence            5666555444444444444    4555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.05  E-value=1.5e-10  Score=100.92  Aligned_cols=49  Identities=10%  Similarity=0.048  Sum_probs=39.3

Q ss_pred             ccc-HHhhC--------CCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccc
Q 045137           11 ELP-EELKL--------LVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY   61 (312)
Q Consensus        11 ~lp-~~i~~--------L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~   61 (312)
                      .+| ..|..        +.+|+.|+|..  .+..+++++|.+|++|+.|++.++.+..++
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~  140 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLL  140 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEEC
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccc
Confidence            455 55677        89999999988  578899888999999999999988776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.03  E-value=1.5e-10  Score=93.03  Aligned_cols=120  Identities=18%  Similarity=0.246  Sum_probs=91.6

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.++.+|.++.  ++|++|++++| .+..+|.. +.++++|++|++++|.+..               .....+.
T Consensus        15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N~i~~---------------i~~~~f~   75 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNNRIST---------------LSNQSFS   75 (193)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSSCCCC---------------CCTTTTT
T ss_pred             EEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCCcCCE---------------eCHhHcc
Confidence            5788889999986553  68999999999 88889864 8999999999999998864               3334577


Q ss_pred             CCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           82 GLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      .+.+|+.|+++.+....++  .+..++    +|+.|++.+.... .... ..+..+++|+.|+++++
T Consensus        76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~----~L~~L~L~~N~l~-~~~~-~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           76 NMTQLLTLILSYNRLRCIPPRTFDGLK----SLRLLSLHGNDIS-VVPE-GAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCT----TCCEEECCSSCCC-BCCT-TTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCccCEeCHHHhCCCC----CCCEEECCCCCCC-eeCh-hhhhcCccccEEEeCCC
Confidence            8888999999877665443  355566    8899998876432 2222 45778899999999975

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.03  E-value=1.5e-10  Score=92.92  Aligned_cols=124  Identities=20%  Similarity=0.235  Sum_probs=89.1

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCc-hhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPR-GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      ++++++.++.+|..+..  +|++|++++| .+..+++ ++++.+++|++|++++|.+..               .....+
T Consensus        13 l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~   74 (192)
T 1w8a_A           13 VDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTG---------------IEPNAF   74 (192)
T ss_dssp             EECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCC---------------BCTTTT
T ss_pred             EEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCC---------------cCHhHc
Confidence            68899999999976654  9999999999 8888876 358999999999999998854               334556


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ..+.+|+.|+++.+....                           .. ...+..+++|++|+++++ .+..+....+.  
T Consensus        75 ~~l~~L~~L~Ls~N~l~~---------------------------~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~--  123 (192)
T 1w8a_A           75 EGASHIQELQLGENKIKE---------------------------IS-NKMFLGLHQLKTLNLYDN-QISCVMPGSFE--  123 (192)
T ss_dssp             TTCTTCCEEECCSCCCCE---------------------------EC-SSSSTTCTTCCEEECCSS-CCCEECTTSST--
T ss_pred             CCcccCCEEECCCCcCCc---------------------------cC-HHHhcCCCCCCEEECCCC-cCCeeCHHHhh--
Confidence            667777777766443211                           11 134566788888888865 55555444343  


Q ss_pred             cccCCCCcccccceEeecCCC
Q 045137          161 RKRREPFVFHSLHLVTIYSCH  181 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~  181 (312)
                             .+++|++|++++|+
T Consensus       124 -------~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          124 -------HLNSLTSLNLASNP  137 (192)
T ss_dssp             -------TCTTCCEEECTTCC
T ss_pred             -------cCCCCCEEEeCCCC
Confidence                   67888888888883

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.03  E-value=2.6e-10  Score=91.61  Aligned_cols=122  Identities=17%  Similarity=0.193  Sum_probs=82.9

Q ss_pred             cEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHH--
Q 045137           23 KCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ--  100 (312)
Q Consensus        23 ~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~--  100 (312)
                      ++++++++ .+..+|.+ +.  ++|++|++++|.+..+                ...+..+.+|+.|+++.+....+.  
T Consensus        13 ~~l~~~~~-~l~~ip~~-~~--~~l~~L~L~~n~i~~i----------------p~~~~~l~~L~~L~Ls~N~i~~i~~~   72 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKG-IP--RDVTELYLDGNQFTLV----------------PKELSNYKHLTLIDLSNNRISTLSNQ   72 (193)
T ss_dssp             TEEECTTS-CCSSCCSC-CC--TTCCEEECCSSCCCSC----------------CGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             CEEEcCCC-CCCcCCCC-CC--CCCCEEECCCCcCchh----------------HHHhhcccCCCEEECCCCcCCEeCHh
Confidence            57888888 78888875 32  5788888888877532                245677788888888877654433  


Q ss_pred             HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCC
Q 045137          101 ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSC  180 (312)
Q Consensus       101 ~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  180 (312)
                      .+..++    +|+.|++++.... .... ..+..+++|++|+++++ .+..+....+.         .+++|+.|++++|
T Consensus        73 ~f~~l~----~L~~L~Ls~N~l~-~i~~-~~f~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N  136 (193)
T 2wfh_A           73 SFSNMT----QLLTLILSYNRLR-CIPP-RTFDGLKSLRLLSLHGN-DISVVPEGAFN---------DLSALSHLAIGAN  136 (193)
T ss_dssp             TTTTCT----TCCEEECCSSCCC-BCCT-TTTTTCTTCCEEECCSS-CCCBCCTTTTT---------TCTTCCEEECCSS
T ss_pred             HccCCC----CCCEEECCCCccC-EeCH-HHhCCCCCCCEEECCCC-CCCeeChhhhh---------cCccccEEEeCCC
Confidence            355555    7888888875432 2221 46777888888888865 56555544343         6788888888877

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.02  E-value=1.8e-10  Score=88.33  Aligned_cols=121  Identities=18%  Similarity=0.051  Sum_probs=77.7

Q ss_pred             cccCCCCCc--cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            2 LDISHTTIR--ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         2 L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |++++|.+.  .+|..++.+++|++|++++| .+..+ . .++.+++|++|++++|.+..               .....
T Consensus        22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~-~~~~l~~L~~L~Ls~n~i~~---------------~~~~~   83 (149)
T 2je0_A           22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-A-NLPKLNKLKKLELSDNRVSG---------------GLEVL   83 (149)
T ss_dssp             EECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-T-TCCCCTTCCEEECCSSCCCS---------------CTHHH
T ss_pred             EEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-h-hhhcCCCCCEEECCCCcccc---------------hHHHH
Confidence            577777777  67777778888888888888 66666 3 27778888888888877643               23344


Q ss_pred             ccCCCCceEEEEEecChhhH---HHHhhcccccccceEEEEeecCCCccccc-hhhhcCccccceEEec
Q 045137           80 LLGLKYLEVLELTLGSYHAL---QILLSSNKLKSCIRSLYLYLTGDKKSIID-ATAFTDLNHLNELWID  144 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~---~~l~~l~~l~~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~  144 (312)
                      +..+++|+.++++.+....+   ..+..++    +|+.|+++++.-...... ...+..+++|++|+++
T Consensus        84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~----~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLE----NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHCTTCCEEECTTSCCCSHHHHGGGGGCT----TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhhCCCCCEEECCCCcCCChHHHHHHhhCC----CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            45577788887776655443   3344455    677777776532211110 1246667777777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.94  E-value=1e-09  Score=86.69  Aligned_cols=123  Identities=18%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.+..+|..+  .++|++|++++| .+..+|+..++.+++|++|++++|.+..++               ...+.
T Consensus        12 l~~~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~   73 (177)
T 2o6r_A           12 IRCNSKGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLP---------------DGVFD   73 (177)
T ss_dssp             EECCSSCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC---------------TTTTT
T ss_pred             EEecCCCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeC---------------hhHcc
Confidence            577888899998544  479999999999 788888877899999999999999885422               22345


Q ss_pred             CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      .+.+|+.++++.+....                           .. ...+..+++|++|+++++ .+..++...+.   
T Consensus        74 ~l~~L~~L~l~~N~l~~---------------------------~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~---  121 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQS---------------------------LP-NGVFDKLTQLKELALDTN-QLKSVPDGIFD---  121 (177)
T ss_dssp             TCTTCCEEECCSSCCCC---------------------------CC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTT---
T ss_pred             CCCccCEEECCCCCccc---------------------------cC-HHHhhCCcccCEEECcCC-cceEeCHHHhc---
Confidence            56666666665432211                           10 123556677888888765 55554443332   


Q ss_pred             ccCCCCcccccceEeecCC
Q 045137          162 KRREPFVFHSLHLVTIYSC  180 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~  180 (312)
                            .+++|++|++++|
T Consensus       122 ------~l~~L~~L~l~~N  134 (177)
T 2o6r_A          122 ------RLTSLQKIWLHTN  134 (177)
T ss_dssp             ------TCTTCCEEECCSS
T ss_pred             ------CCcccCEEEecCC
Confidence                  5778888888877

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.92  E-value=5.8e-10  Score=88.07  Aligned_cols=131  Identities=12%  Similarity=0.020  Sum_probs=87.6

Q ss_pred             HhhCCCCCcEEecCCCCCccccCchhhhccc-cccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEe
Q 045137           15 ELKLLVNLKCLNLRWTGALIRIPRGLISKFS-RLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTL   93 (312)
Q Consensus        15 ~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~   93 (312)
                      .+.++.+|+.|++++| .+..+|.  +..+. +|++|++++|.+..                 +..+..+++|+.|+++.
T Consensus        14 ~~~~~~~L~~L~l~~n-~l~~i~~--~~~~~~~L~~L~Ls~N~l~~-----------------~~~l~~l~~L~~L~Ls~   73 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGY-KIPVIEN--LGATLDQFDAIDFSDNEIRK-----------------LDGFPLLRRLKTLLVNN   73 (176)
T ss_dssp             EEECTTSCEEEECTTS-CCCSCCC--GGGGTTCCSEEECCSSCCCE-----------------ECCCCCCSSCCEEECCS
T ss_pred             hcCCcCCceEEEeeCC-CCchhHH--hhhcCCCCCEEECCCCCCCc-----------------ccccccCCCCCEEECCC
Confidence            3566778888888888 7777754  55544 88888888887742                 25567777888888877


Q ss_pred             cChhhHH-H-HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeee---ccccccccCCCCc
Q 045137           94 GSYHALQ-I-LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKID---YTEIVRKRREPFV  168 (312)
Q Consensus        94 ~~~~~~~-~-l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~~~~~~~~~~~  168 (312)
                      +....++ . +..++    +|+.|+++++.-. .......+..+++|+.|+++++ .+..++..   ...         .
T Consensus        74 N~l~~~~~~~~~~l~----~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~---------~  138 (176)
T 1a9n_A           74 NRICRIGEGLDQALP----DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIY---------K  138 (176)
T ss_dssp             SCCCEECSCHHHHCT----TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHH---------H
T ss_pred             CcccccCcchhhcCC----CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHH---------H
Confidence            6654433 1 35556    7888888876432 2221136778888999999876 44433321   122         6


Q ss_pred             ccccceEeecCC
Q 045137          169 FHSLHLVTIYSC  180 (312)
Q Consensus       169 ~~~L~~L~l~~~  180 (312)
                      +++|+.|+++++
T Consensus       139 l~~L~~Ld~~~n  150 (176)
T 1a9n_A          139 VPQVRVLDFQKV  150 (176)
T ss_dssp             CTTCSEETTEEC
T ss_pred             CCccceeCCCcC
Confidence            789999998887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.90  E-value=6.8e-10  Score=87.65  Aligned_cols=120  Identities=16%  Similarity=0.085  Sum_probs=91.4

Q ss_pred             cccCCCCCccccHHhhCCC-CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELPEELKLLV-NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |++++|.++.+|. +..+. +|++|++++| .+..++ . ++.+++|++|++++|.+..+|               ...+
T Consensus        24 L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~---------------~~~~   84 (176)
T 1a9n_A           24 LDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKLD-G-FPLLRRLKTLLVNNNRICRIG---------------EGLD   84 (176)
T ss_dssp             EECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEEC-C-CCCCSSCCEEECCSSCCCEEC---------------SCHH
T ss_pred             EEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCccc-c-cccCCCCCEEECCCCcccccC---------------cchh
Confidence            7899999999875 55555 9999999999 888884 3 899999999999999886432               1224


Q ss_pred             cCCCCceEEEEEecChhhHHH---HhhcccccccceEEEEeecCCCccccchh----hhcCccccceEEeccCc
Q 045137           81 LGLKYLEVLELTLGSYHALQI---LLSSNKLKSCIRSLYLYLTGDKKSIIDAT----AFTDLNHLNELWIDNGI  147 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~---l~~l~~l~~~L~~L~l~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~  147 (312)
                      ..+++|+.++++.+....++.   +..++    +|+.|++.++.-.   ..+.    .+..+++|+.|+++.+.
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~----~L~~L~l~~N~i~---~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELGDLDPLASLK----SLTYLCILRNPVT---NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCT----TCCEEECCSSGGG---GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hcCCCCCEEECCCCcCCcchhhHhhhcCC----CCCEEEecCCCCC---CcHhHHHHHHHHCCccceeCCCcCC
Confidence            678899999999876655443   45555    7999999876432   2222    47888999999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.85  E-value=2.6e-10  Score=109.67  Aligned_cols=116  Identities=19%  Similarity=0.145  Sum_probs=76.0

Q ss_pred             CCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCC
Q 045137            6 HTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKY   85 (312)
Q Consensus         6 ~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~   85 (312)
                      +|.+...|..+..+.+|+.|+|++| .+..+|.. +.++++|++|++++|.+..+                +..+..|.+
T Consensus       210 ~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~~l~~L~~L~Ls~N~l~~l----------------p~~~~~l~~  271 (727)
T 4b8c_D          210 ENRMVMPKDSKYDDQLWHALDLSNL-QIFNISAN-IFKYDFLTRLYLNGNSLTEL----------------PAEIKNLSN  271 (727)
T ss_dssp             ------------CCCCCCEEECTTS-CCSCCCGG-GGGCCSCSCCBCTTSCCSCC----------------CGGGGGGTT
T ss_pred             ccceecChhhhccCCCCcEEECCCC-CCCCCChh-hcCCCCCCEEEeeCCcCccc----------------ChhhhCCCC
Confidence            3344444677888899999999998 77888887 66889999999998887532                345677788


Q ss_pred             ceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           86 LEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        86 L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      |+.|+++.+....++ .+..++    +|+.|+++++.. .  .++..+..+++|+.|+++++
T Consensus       272 L~~L~Ls~N~l~~lp~~~~~l~----~L~~L~L~~N~l-~--~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          272 LRVLDLSHNRLTSLPAELGSCF----QLKYFYFFDNMV-T--TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CCEEECTTSCCSSCCSSGGGGT----TCSEEECCSSCC-C--CCCSSTTSCTTCCCEECTTS
T ss_pred             CCEEeCcCCcCCccChhhcCCC----CCCEEECCCCCC-C--ccChhhhcCCCccEEeCCCC
Confidence            888888877655443 345555    778888876633 2  33345777888888888865

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.83  E-value=1.9e-09  Score=85.13  Aligned_cols=79  Identities=20%  Similarity=0.284  Sum_probs=63.4

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|++++|.+..+| ..++.+++|++|++++| .+..+|+..+..+++|++|++++|.+..++               ...
T Consensus        32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---------------~~~   95 (177)
T 2o6r_A           32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLP---------------NGV   95 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTT
T ss_pred             EEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccC---------------HHH
Confidence            3789999999887 55799999999999999 889998877899999999999999886432               233


Q ss_pred             ccCCCCceEEEEEecC
Q 045137           80 LLGLKYLEVLELTLGS   95 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~   95 (312)
                      +..+++|+.++++.+.
T Consensus        96 ~~~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQ  111 (177)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hhCCcccCEEECcCCc
Confidence            4566677777766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.82  E-value=3.5e-09  Score=83.12  Aligned_cols=98  Identities=13%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.++.+|.++  .++|++|+|++| .+..+++..+.++++|++|++++|.+..++               ...+.
T Consensus        14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------------~~~f~   75 (170)
T 3g39_A           14 VDCSGKSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLP---------------AGVFD   75 (170)
T ss_dssp             EECTTSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC---------------TTTTT
T ss_pred             EEeCCCCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccC---------------hhhcc
Confidence            678888888888665  378888888888 788876666888888888888888876432               23356


Q ss_pred             CCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecC
Q 045137           82 GLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTG  121 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~  121 (312)
                      .+.+|+.|+++.+....++  .+..++    +|+.|++.+..
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~----~L~~L~L~~N~  113 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRGAFDNLK----SLTHIWLLNNP  113 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCT----TCCEEECCSSC
T ss_pred             CCCCCCEEECCCCccCEeCHHHhcCCC----CCCEEEeCCCC
Confidence            7788888888877665544  245556    78888887653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.82  E-value=1.5e-09  Score=86.99  Aligned_cols=79  Identities=19%  Similarity=0.152  Sum_probs=63.1

Q ss_pred             CcccCCCCCccccH--HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137            1 LLDISHTTIRELPE--ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|++++|.+..++.  .|+.+++|++|+|++| .+..+++..+.++++|++|++++|.+..+               ...
T Consensus        33 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~   96 (192)
T 1w8a_A           33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEI---------------SNK   96 (192)
T ss_dssp             EEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEE---------------CSS
T ss_pred             EEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCcc---------------CHH
Confidence            37899999999874  3999999999999999 88888665699999999999999998653               233


Q ss_pred             hccCCCCceEEEEEecC
Q 045137           79 ELLGLKYLEVLELTLGS   95 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~   95 (312)
                      .+..+++|+.|+++.+.
T Consensus        97 ~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           97 MFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             SSTTCTTCCEEECCSSC
T ss_pred             HhcCCCCCCEEECCCCc
Confidence            45566777777776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.80  E-value=2.3e-09  Score=84.14  Aligned_cols=78  Identities=23%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             cccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |+|++|.|+.+ |..|+.+++|++|+|++| .+..+|++++.++++|++|++++|.+..++               ...+
T Consensus        35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~---------------~~~~   98 (170)
T 3g39_A           35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIP---------------RGAF   98 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTTT
T ss_pred             EEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccCEeC---------------HHHh
Confidence            56667777666 355667777777777777 666666665666777777777766664321               2235


Q ss_pred             cCCCCceEEEEEecC
Q 045137           81 LGLKYLEVLELTLGS   95 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~   95 (312)
                      ..+++|+.++++.+.
T Consensus        99 ~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           99 DNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEEeCCCC
Confidence            556666666666553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.80  E-value=4.6e-09  Score=82.78  Aligned_cols=98  Identities=13%  Similarity=0.194  Sum_probs=70.7

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++++++.+..+|.++.  ++|++|+|++| .+..+++..+.++++|++|++++|.+..+|               ...+.
T Consensus        17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~---------------~~~~~   78 (174)
T 2r9u_A           17 VNCQNIRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIP---------------TGVFD   78 (174)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTTTT
T ss_pred             EEeCCCCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccC---------------hhHhC
Confidence            5778888888887664  78888888888 777776666888888888888888776432               22346


Q ss_pred             CCCCceEEEEEecChhhHHH--HhhcccccccceEEEEeecC
Q 045137           82 GLKYLEVLELTLGSYHALQI--LLSSNKLKSCIRSLYLYLTG  121 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~--l~~l~~l~~~L~~L~l~~~~  121 (312)
                      .+.+|+.|+++.+....++.  +..++    +|+.|++.+..
T Consensus        79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~----~L~~L~L~~N~  116 (174)
T 2r9u_A           79 KLTQLTQLDLNDNHLKSIPRGAFDNLK----SLTHIYLYNNP  116 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCT----TCSEEECCSSC
T ss_pred             CcchhhEEECCCCccceeCHHHhcccc----CCCEEEeCCCC
Confidence            67788888888776654442  45555    77888877653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.80  E-value=2.3e-09  Score=84.53  Aligned_cols=56  Identities=29%  Similarity=0.384  Sum_probs=33.7

Q ss_pred             cccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137            2 LDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF   58 (312)
Q Consensus         2 L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~   58 (312)
                      |+|++|.+..+ |..|+.+++|++|+|++| .+..+|++++.++++|++|++++|.+.
T Consensus        38 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccc
Confidence            45666666655 355666666666666666 566666554566666666666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.79  E-value=2.9e-10  Score=91.65  Aligned_cols=96  Identities=19%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|++++|.+..+| .++.+++|++|++++| .+..+|.. +..+++|++|++++|.+..                 +..+
T Consensus        52 ~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~~~L~~L~L~~N~l~~-----------------l~~~  111 (198)
T 1ds9_A           52 HLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISYNQIAS-----------------LSGI  111 (198)
T ss_dssp             EEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSH-HHHHHHCSEEEEEEEECCC-----------------HHHH
T ss_pred             EEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccch-hhcCCcCCEEECcCCcCCc-----------------CCcc
Confidence            4789999999999 9999999999999999 88899875 8889999999999998853                 2356


Q ss_pred             cCCCCceEEEEEecChhhHH---HHhhcccccccceEEEEeec
Q 045137           81 LGLKYLEVLELTLGSYHALQ---ILLSSNKLKSCIRSLYLYLT  120 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~---~l~~l~~l~~~L~~L~l~~~  120 (312)
                      ..+++|+.++++.+....++   .+..++    +|+.|++.++
T Consensus       112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~----~L~~L~l~~N  150 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKITNWGEIDKLAALD----KLEDLLLAGN  150 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTT----TCSEEEECSC
T ss_pred             ccCCCCCEEECCCCcCCchhHHHHHhcCC----CCCEEEecCC
Confidence            77788999998877655433   455555    7788887765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=1.7e-07  Score=81.51  Aligned_cols=214  Identities=13%  Similarity=0.015  Sum_probs=113.6

Q ss_pred             cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      |+|+. .++.++ ..|..+++|+.+++.+| .+..+++.+|..+.++..+.........-.           .......+
T Consensus       106 l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-----------~~i~~~~f  172 (329)
T 3sb4_A          106 VILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK-----------NRWEHFAF  172 (329)
T ss_dssp             -CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTS-----------TTTTTSCE
T ss_pred             EECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcc-----------cccccccc
Confidence            45666 788887 67999999999999999 888999988988887777765442110000           00111122


Q ss_pred             cCCCCce-EEEEEecChhhHHH-HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137           81 LGLKYLE-VLELTLGSYHALQI-LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE  158 (312)
Q Consensus        81 ~~L~~L~-~l~l~~~~~~~~~~-l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  158 (312)
                      ..+..|+ .+.+.  ....++. +........++..+.+.+.-.  ..........+++|+++++.++ .+..++...+.
T Consensus       173 ~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~  247 (329)
T 3sb4_A          173 IEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKLD--NADFKLIRDYMPNLVSLDISKT-NATTIPDFTFA  247 (329)
T ss_dssp             EESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECCC--HHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTT
T ss_pred             ccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeeec--HHHHHHHHHhcCCCeEEECCCC-CcceecHhhhh
Confidence            3344554 33332  2112221 111111112555665554311  1111011123567777777754 46666655554


Q ss_pred             cccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCc-eEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137          159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLK-SLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD  235 (312)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  235 (312)
                               .+.+|+.|++.++  +..++  .+..+++|+ .+.+.+  .++.+-.           ..-..+++|+.+.
T Consensus       248 ---------~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c~~L~~l~  303 (329)
T 3sb4_A          248 ---------QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGCDNLRYVL  303 (329)
T ss_dssp             ---------TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTCTTEEEEE
T ss_pred             ---------CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCCccCCEEE
Confidence                     6777777777764  55555  566777777 777755  2333311           1223456666666


Q ss_pred             ccccccccccccC-CcCCCCccEE
Q 045137          236 LSYLPELKSIFWK-PLPFTHLKEM  258 (312)
Q Consensus       236 l~~~~~l~~~~~~-~~~~~~L~~L  258 (312)
                      +.+ ..++.+... +..+++|+.+
T Consensus       304 l~~-n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          304 ATG-DKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             ECS-SCCCEECTTTTCTTCCCCEE
T ss_pred             eCC-CccCccchhhhcCCcchhhh
Confidence            544 234444432 2334444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.67  E-value=6.1e-07  Score=80.11  Aligned_cols=133  Identities=14%  Similarity=0.132  Sum_probs=71.2

Q ss_pred             cccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcc-----cCC--ccCCCCCCceEEEeeccccce
Q 045137          136 NHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLK-----DST--FLAFAPNLKSLSLFKCRAMEE  208 (312)
Q Consensus       136 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~--~l~~l~~L~~L~l~~~~~~~~  208 (312)
                      .+|+.+.+.+  .+..++...+.         .+++|+.+++.++ ...     .++  .+..+++|+.+.+.+  .+..
T Consensus       248 ~~L~~i~lp~--~i~~I~~~aF~---------~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~  313 (401)
T 4fdw_A          248 SGITTVKLPN--GVTNIASRAFY---------YCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRI  313 (401)
T ss_dssp             CCCSEEEEET--TCCEECTTTTT---------TCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT--TCCE
T ss_pred             CCccEEEeCC--CccEEChhHhh---------CCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC--ceEE
Confidence            3455555532  34444444333         5667777776654 221     232  455667777776653  1333


Q ss_pred             ecccCccccCCCCCCCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCCCCCCCCCcccc-ccceEeeeh
Q 045137          209 IISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAK-ERKFVIRGE  286 (312)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~-~~l~~i~~~  286 (312)
                      +-.           ..-..+++|+.+.+..  +++.+... +..+ +|+.+.+.+. .+..++.+..... ..+..++.+
T Consensus       314 I~~-----------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          314 LGQ-----------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             ECT-----------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred             Ehh-----------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeC
Confidence            211           1224456777777744  35555543 3445 8888888874 5555665554443 456666666


Q ss_pred             Hhhhhh----ccccc
Q 045137          287 EDWWNR----LQWED  297 (312)
Q Consensus       287 ~~~~~~----~~~~~  297 (312)
                      .+..+.    -.|++
T Consensus       379 ~~~~~~y~~a~~W~~  393 (401)
T 4fdw_A          379 AESVEKYKNANGWRD  393 (401)
T ss_dssp             GGGHHHHHHSTTGGG
T ss_pred             HHHHHHhhhccchhh
Confidence            544333    45665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.64  E-value=7.3e-09  Score=99.61  Aligned_cols=97  Identities=21%  Similarity=0.103  Sum_probs=64.1

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      |+|++|.+..+|..+..+++|++|+|++| .+..+|.. +++|++|++|++++|.+..+|                ..+.
T Consensus       229 L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp----------------~~~~  290 (727)
T 4b8c_D          229 LDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAE-IKNLSNLRVLDLSHNRLTSLP----------------AELG  290 (727)
T ss_dssp             EECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGG-GGGGTTCCEEECTTSCCSSCC----------------SSGG
T ss_pred             EECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChh-hhCCCCCCEEeCcCCcCCccC----------------hhhc
Confidence            67788888888877778888888888888 67777776 788888888888888775433                3344


Q ss_pred             CCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeec
Q 045137           82 GLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLT  120 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~  120 (312)
                      .|.+|+.|+++.+....++ .+..++    +|+.|+++++
T Consensus       291 ~l~~L~~L~L~~N~l~~lp~~~~~l~----~L~~L~L~~N  326 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLPWEFGNLC----NLQFLGVEGN  326 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCCSSTTSCT----TCCCEECTTS
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCC----CccEEeCCCC
Confidence            5555666666555443332 233344    5566665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.62  E-value=2e-08  Score=78.43  Aligned_cols=37  Identities=30%  Similarity=0.298  Sum_probs=16.4

Q ss_pred             ccceEeecCCCCccc--CCccCCCCCCceEEEeeccccc
Q 045137          171 SLHLVTIYSCHKLKD--STFLAFAPNLKSLSLFKCRAME  207 (312)
Q Consensus       171 ~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~~~~  207 (312)
                      +|++|+|++|.++++  +..+..+++|++|++++|+.++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            444444444444444  2233344444444444444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.57  E-value=6.9e-07  Score=79.78  Aligned_cols=222  Identities=9%  Similarity=0.094  Sum_probs=140.1

Q ss_pred             CCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCc
Q 045137            8 TIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYL   86 (312)
Q Consensus         8 ~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L   86 (312)
                      .|+.++ ..|.+ .+|+.+.+..+  +..++..+|.++ +|+.+.+.. .+..               .....+..+.+|
T Consensus       123 ~i~~I~~~aF~~-~~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~---------------I~~~aF~~c~~L  182 (401)
T 4fdw_A          123 SVKSIPKDAFRN-SQIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQ---------------LKEDIFYYCYNL  182 (401)
T ss_dssp             TCCEECTTTTTT-CCCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCE---------------ECSSTTTTCTTC
T ss_pred             ccCEehHhhccc-CCccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccE---------------ehHHHhhCcccC
Confidence            345554 44555 47888888665  777777777775 688888875 3433               223445666777


Q ss_pred             eEEEEEecChhhHHH-HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCC
Q 045137           87 EVLELTLGSYHALQI-LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRRE  165 (312)
Q Consensus        87 ~~l~l~~~~~~~~~~-l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~  165 (312)
                      +.+++..+....++. .....    .|+.+.+..  ....... .++..+++|+.+.+.+  .+..++...+.       
T Consensus       183 ~~l~l~~n~l~~I~~~aF~~~----~L~~l~lp~--~l~~I~~-~aF~~~~~L~~l~l~~--~l~~I~~~aF~-------  246 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFVYA----GIEEVLLPV--TLKEIGS-QAFLKTSQLKTIEIPE--NVSTIGQEAFR-------  246 (401)
T ss_dssp             CEEECTTSCCSEECTTTTTTC----CCSEEECCT--TCCEECT-TTTTTCTTCCCEECCT--TCCEECTTTTT-------
T ss_pred             CeeecCCCcceEechhhEeec----ccCEEEeCC--chheehh-hHhhCCCCCCEEecCC--CccCccccccc-------
Confidence            777765433322221 01112    677776653  2222222 5778888999999986  56777666553       


Q ss_pred             CCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccce---ecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137          166 PFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEE---IISVGKIAENPEMMGHISPFENLKSLDLSYLP  240 (312)
Q Consensus       166 ~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  240 (312)
                        . .+|+.+.+.+  .+..++  .+..+++|+.+.+.++.....   .++.          ..-..+++|+.+.+.+  
T Consensus       247 --~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~----------~aF~~c~~L~~l~l~~--  309 (401)
T 4fdw_A          247 --E-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP----------YCLEGCPKLARFEIPE--  309 (401)
T ss_dssp             --T-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT----------TTTTTCTTCCEECCCT--
T ss_pred             --c-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH----------HHhhCCccCCeEEeCC--
Confidence              3 7899999965  466665  788899999999987543211   0110          1335678899988874  


Q ss_pred             cccccccC-CcCCCCccEEEecCCCCCCCCCCCCccccccceEeee
Q 045137          241 ELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRG  285 (312)
Q Consensus       241 ~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~  285 (312)
                      +++.+... +..+++|+.+.+..  +++.++....... .++.+..
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l  352 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKV  352 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEE
T ss_pred             ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEE
Confidence            46666654 45578899998853  4777776666665 6666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.51  E-value=6e-08  Score=84.88  Aligned_cols=98  Identities=18%  Similarity=0.159  Sum_probs=69.2

Q ss_pred             cccCCC-CCccccHHhhCCCCCcEEecCC-CCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            2 LDISHT-TIRELPEELKLLVNLKCLNLRW-TGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         2 L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~-~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      ++.+++ .++.+|. +..+.+|++|+|++ | .+..+|+..|+++++|++|++++|.+..               .....
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~---------------~~~~~   75 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRF---------------VAPDA   75 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCE---------------ECTTG
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccce---------------eCHHH
Confidence            466776 7888888 88888889999886 7 8888887668888889999988888754               33345


Q ss_pred             ccCCCCceEEEEEecChhhHHH-HhhcccccccceEEEEeec
Q 045137           80 LLGLKYLEVLELTLGSYHALQI-LLSSNKLKSCIRSLYLYLT  120 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~~-l~~l~~l~~~L~~L~l~~~  120 (312)
                      +..|.+|+.|+++.+....++. .....    .|+.|++.+.
T Consensus        76 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~----~L~~l~l~~N  113 (347)
T 2ifg_A           76 FHFTPRLSRLNLSFNALESLSWKTVQGL----SLQELVLSGN  113 (347)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSC----CCCEEECCSS
T ss_pred             hcCCcCCCEEeCCCCccceeCHHHcccC----CceEEEeeCC
Confidence            6777888888887766543331 11111    3666766654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.43  E-value=5.1e-07  Score=70.45  Aligned_cols=99  Identities=16%  Similarity=0.251  Sum_probs=53.1

Q ss_pred             cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHHHHhhccc---ccccc
Q 045137           36 IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNK---LKSCI  112 (312)
Q Consensus        36 lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~---l~~~L  112 (312)
                      +|.....+ .+|+.|++++|.++.               ..+..+..+++|+.|+++.+...+...+..+..   .+.+|
T Consensus        53 LP~~~~~~-~~L~~LDLs~~~Itd---------------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L  116 (176)
T 3e4g_A           53 LPTGPLDK-YKIQAIDATDSCIMS---------------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM  116 (176)
T ss_dssp             SCCCSTTC-CCEEEEEEESCCCCG---------------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC
T ss_pred             CCcccCCC-ceEeEEeCcCCCccH---------------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC
Confidence            55542223 468888888887643               445556666667767666543323333322221   12245


Q ss_pred             eEEEEeecCCCccccchhhhcCccccceEEeccCcCcce
Q 045137          113 RSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE  151 (312)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~  151 (312)
                      ++|++++|...++..+ ..+..+++|++|++++|..+++
T Consensus       117 ~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          117 LEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred             CEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence            6666666655555544 4445555566666665554443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.37  E-value=6e-08  Score=85.80  Aligned_cols=160  Identities=14%  Similarity=0.058  Sum_probs=94.4

Q ss_pred             CCCCcEEecCCCCCccccCchhhhcc-----ccccEEEEecccccccccCCCCccccCCccchhhh-ccCCCCceEEEEE
Q 045137           19 LVNLKCLNLRWTGALIRIPRGLISKF-----SRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE-LLGLKYLEVLELT   92 (312)
Q Consensus        19 L~~L~~L~L~~~~~~~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~l~l~   92 (312)
                      +++|++|+|++| .+.......+..+     ++|++|++++|.+..               ..... ...+.+|+.|+++
T Consensus        71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~---------------~~~~~l~~~L~~L~~L~Ls  134 (372)
T 3un9_A           71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP---------------AGLRTLLPVFLRARKLGLQ  134 (372)
T ss_dssp             HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH---------------HHHHHTHHHHHTEEEEECC
T ss_pred             HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH---------------HHHHHHHHHHHhccHhhcC
Confidence            467888888888 5654333223333     688888888887642               22222 2234567788887


Q ss_pred             ecChhh--HHHHhhc-ccccccceEEEEeecCCCc--cccchhhhcCccccceEEeccCcCcceeeee----cccccccc
Q 045137           93 LGSYHA--LQILLSS-NKLKSCIRSLYLYLTGDKK--SIIDATAFTDLNHLNELWIDNGIELEELKID----YTEIVRKR  163 (312)
Q Consensus        93 ~~~~~~--~~~l~~l-~~l~~~L~~L~l~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~----~~~~~~~~  163 (312)
                      .+....  ...+... ..-...|+.|+++++....  ...+...+...++|++|+++++ .+...+..    .+.     
T Consensus       135 ~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~-----  208 (372)
T 3un9_A          135 LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD-----  208 (372)
T ss_dssp             SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG-----
T ss_pred             CCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh-----
Confidence            665422  2222111 0011268888888774321  1223345567788999999876 45443321    122     


Q ss_pred             CCCCcccccceEeecCCCCcccCC------ccCCCCCCceEEEeeccc
Q 045137          164 REPFVFHSLHLVTIYSCHKLKDST------FLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       164 ~~~~~~~~L~~L~l~~~~~l~~l~------~l~~l~~L~~L~l~~~~~  205 (312)
                          ..++|+.|++++| .+++..      .+...++|++|++++|..
T Consensus       209 ----~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          209 ----RNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             ----GCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             ----cCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence                4578999999988 666521      234568899999988864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.37  E-value=3.6e-08  Score=87.23  Aligned_cols=174  Identities=17%  Similarity=0.064  Sum_probs=91.7

Q ss_pred             cccccEEEEecccccccccCCCCccccCCccchhhhccC-CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCC
Q 045137           44 FSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG-LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGD  122 (312)
Q Consensus        44 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~  122 (312)
                      +++|+.|++++|.+...+.           ......+.. ..+|+.|+++.+.... ..+..+.....+++.|+++++.-
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~-----------~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l  138 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKC-----------TVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSL  138 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHH-----------HHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCC
T ss_pred             HhhCCEEEecCCCCCHHHH-----------HHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCC
Confidence            5678888888887753211           011122222 2578888887665422 11111111112678888887643


Q ss_pred             Cccc--cchhhh-cCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccC-----C-ccCCCC
Q 045137          123 KKSI--IDATAF-TDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS-----T-FLAFAP  193 (312)
Q Consensus       123 ~~~~--~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~-~l~~l~  193 (312)
                      ....  .+...+ ...++|++|++++| .+...+...+..  ..  . ..++|++|+|++| .+.+.     . .+...+
T Consensus       139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~--~L--~-~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~  211 (372)
T 3un9_A          139 GPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLME--GL--A-GNTSVTHLSLLHT-GLGDEGLELLAAQLDRNR  211 (372)
T ss_dssp             CHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHH--HH--H-TCSSCCEEECTTS-SCHHHHHHHHHHHGGGCS
T ss_pred             CHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHH--HH--h-cCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCC
Confidence            2111  111222 24567888888876 444332222100  00  0 4677888888888 56542     2 355677


Q ss_pred             CCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccc
Q 045137          194 NLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSI  245 (312)
Q Consensus       194 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  245 (312)
                      +|++|++++|........        .+.......++|++|+++++. +...
T Consensus       212 ~L~~L~Ls~N~i~~~g~~--------~l~~~L~~~~~L~~L~Ls~N~-i~~~  254 (372)
T 3un9_A          212 QLQELNVAYNGAGDTAAL--------ALARAAREHPSLELLHLYFNE-LSSE  254 (372)
T ss_dssp             CCCEEECCSSCCCHHHHH--------HHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred             CcCeEECCCCCCCHHHHH--------HHHHHHHhCCCCCEEeccCCC-CCHH
Confidence            888888888764322100        000123345778888888763 5443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.34  E-value=3.8e-07  Score=79.74  Aligned_cols=79  Identities=20%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             CcccCC-CCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137            1 LLDISH-TTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|+|++ |.+..+| ..|+.|++|++|+|++| .+..+++..|.++++|++|++++|.+..+|.               .
T Consensus        35 ~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------------~   98 (347)
T 2ifg_A           35 ELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSW---------------K   98 (347)
T ss_dssp             EEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCS---------------T
T ss_pred             EEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCH---------------H
Confidence            378996 9999987 77999999999999999 8999988779999999999999999876442               1


Q ss_pred             hccCCCCceEEEEEecCh
Q 045137           79 ELLGLKYLEVLELTLGSY   96 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~   96 (312)
                      .+..+. |+.|++..+..
T Consensus        99 ~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             TTCSCC-CCEEECCSSCC
T ss_pred             HcccCC-ceEEEeeCCCc
Confidence            223333 88888876644

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.18  E-value=2.1e-06  Score=75.42  Aligned_cols=15  Identities=27%  Similarity=0.468  Sum_probs=8.9

Q ss_pred             hhccccccEEEEecc
Q 045137           41 ISKFSRLRVLRMLGT   55 (312)
Q Consensus        41 i~~l~~L~~L~l~~~   55 (312)
                      +..+++|+.|++.+|
T Consensus       168 l~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGT  182 (362)
T ss_dssp             HHTCTTCCEEEEECC
T ss_pred             HhcCCCCcEEEEeCC
Confidence            455566666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.81  E-value=2.4e-05  Score=68.63  Aligned_cols=63  Identities=25%  Similarity=0.315  Sum_probs=41.4

Q ss_pred             cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc--CCCCceE
Q 045137           11 ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL--GLKYLEV   88 (312)
Q Consensus        11 ~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~~   88 (312)
                      .++..+..+++|+.|+|++|..+ .++.  +. +++|++|++..|.+..               ..+..+.  .+++|+.
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~---------------~~l~~l~~~~lp~L~~  223 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPD---------------SVVEDILGSDLPNLEK  223 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCH---------------HHHHHHHHSBCTTCCE
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCCh---------------HHHHHHHHccCCCCcE
Confidence            45566778889999999887323 3444  33 7889999988776632               3333333  5677777


Q ss_pred             EEEE
Q 045137           89 LELT   92 (312)
Q Consensus        89 l~l~   92 (312)
                      |+++
T Consensus       224 L~L~  227 (362)
T 2ra8_A          224 LVLY  227 (362)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.73  E-value=3e-05  Score=64.89  Aligned_cols=79  Identities=24%  Similarity=0.263  Sum_probs=54.5

Q ss_pred             cccCCCCCccccHHh----hCCCCCcEEecCCCCCccccCc--hhhhccccccEEEEecccccccccCCCCccccCCccc
Q 045137            2 LDISHTTIRELPEEL----KLLVNLKCLNLRWTGALIRIPR--GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEV   75 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i----~~L~~L~~L~L~~~~~~~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   75 (312)
                      ++++.|....++..+    .++++|+.|+|++| .+..++.  ..+..+++|+.|++++|.+..+              .
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--------------~  212 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE--------------R  212 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--------------G
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc--------------h
Confidence            345566544444322    57899999999999 7776542  2367999999999999988632              2


Q ss_pred             hhhhccCCCCceEEEEEecCh
Q 045137           76 LIQELLGLKYLEVLELTLGSY   96 (312)
Q Consensus        76 ~~~~l~~L~~L~~l~l~~~~~   96 (312)
                      .+..+..+ +|+.|++..+..
T Consensus       213 ~l~~l~~l-~L~~L~L~~Npl  232 (267)
T 3rw6_A          213 ELDKIKGL-KLEELWLDGNSL  232 (267)
T ss_dssp             GGGGGTTS-CCSEEECTTSTT
T ss_pred             hhhhcccC-CcceEEccCCcC
Confidence            34444444 788888876654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.42  E-value=9.7e-05  Score=61.77  Aligned_cols=55  Identities=25%  Similarity=0.267  Sum_probs=45.5

Q ss_pred             CcccCCCCCcccc---HHhhCCCCCcEEecCCCCCccccCchhhhccc--cccEEEEeccccc
Q 045137            1 LLDISHTTIRELP---EELKLLVNLKCLNLRWTGALIRIPRGLISKFS--RLRVLRMLGTGGF   58 (312)
Q Consensus         1 ~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~--~L~~L~l~~~~~~   58 (312)
                      .|+|++|.++.++   ..++.+++|++|+|++| .+..+..  +..+.  +|++|++.+|.+.
T Consensus       174 ~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECTTSTTG
T ss_pred             EEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEccCCcCc
Confidence            3789999998654   67789999999999999 7887733  56565  9999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.33  E-value=0.00015  Score=57.18  Aligned_cols=119  Identities=13%  Similarity=0.006  Sum_probs=73.9

Q ss_pred             ccHHhhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCc
Q 045137           12 LPEELKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYL   86 (312)
Q Consensus        12 lp~~i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L   86 (312)
                      +...+...+.|++|+|++|..+..     +... +...++|++|++++|.+..-+           .......+...++|
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g-----------~~~l~~~L~~n~~L   95 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPV-----------AFALAEMLKVNNTL   95 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHH-----------HHHHHHHHHHCSSC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHH-----------HHHHHHHHHhCCCc
Confidence            345567788999999998833332     3332 566788999999998875311           11223445566788


Q ss_pred             eEEEEEecChhh--H----HHHhhcccccccceEEEE--eecCCCcc--ccchhhhcCccccceEEeccC
Q 045137           87 EVLELTLGSYHA--L----QILLSSNKLKSCIRSLYL--YLTGDKKS--IIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        87 ~~l~l~~~~~~~--~----~~l~~l~~l~~~L~~L~l--~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      +.|+++.+....  .    ..+...+    .|+.|++  .++.....  ..+...+...+.|++|+++++
T Consensus        96 ~~L~L~~N~i~~~g~~~l~~~L~~n~----~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           96 KSLNVESNFISGSGILALVEALQSNT----SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CEEECCSSCCCHHHHHHHHHGGGGCS----SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CEEECcCCcCCHHHHHHHHHHHHhCC----CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            899988775532  1    2233333    7899998  54432211  123355666678999999875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.26  E-value=0.003  Score=55.83  Aligned_cols=39  Identities=15%  Similarity=0.281  Sum_probs=21.3

Q ss_pred             HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137           15 ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT   55 (312)
Q Consensus        15 ~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~   55 (312)
                      .|..+.+|+.+.+..+  +..++.+++.++.+|+.+.+..+
T Consensus       157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence            3455566666666543  34455555666666666655443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.15  E-value=0.00022  Score=56.29  Aligned_cols=123  Identities=12%  Similarity=-0.036  Sum_probs=70.2

Q ss_pred             hhhccccccEEEEecc-cccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhh--H----HHHhhcccccccc
Q 045137           40 LISKFSRLRVLRMLGT-GGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA--L----QILLSSNKLKSCI  112 (312)
Q Consensus        40 ~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~--~----~~l~~l~~l~~~L  112 (312)
                      ++...++|++|++++| .+..-.           .......+...++|+.|+++.+....  .    ..+...+    .|
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g-----------~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~----~L   95 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPT-----------LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN----TL   95 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHH-----------HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS----SC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHH-----------HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC----Cc
Confidence            3566788899998888 664311           11233455666788888887665421  1    1233333    78


Q ss_pred             eEEEEeecCCCcc--ccchhhhcCccccceEEe--ccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcc
Q 045137          113 RSLYLYLTGDKKS--IIDATAFTDLNHLNELWI--DNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLK  184 (312)
Q Consensus       113 ~~L~l~~~~~~~~--~~~~~~l~~l~~L~~L~l--~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  184 (312)
                      ++|+++++.....  ..+...+...++|++|++  +++ .+...+...+..  ...   ..++|++|++++| .+.
T Consensus        96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~--~L~---~n~~L~~L~L~~n-~i~  164 (185)
T 1io0_A           96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN--MLE---KNTTLLKFGYHFT-QQG  164 (185)
T ss_dssp             CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH--HHH---HCSSCCEEECCCS-SHH
T ss_pred             CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH--HHH---hCCCcCEEeccCC-CCC
Confidence            8888887643221  123356666678888888  543 444332211110  000   4578888888887 443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.10  E-value=0.00043  Score=51.16  Aligned_cols=54  Identities=22%  Similarity=0.301  Sum_probs=44.3

Q ss_pred             cccCCCCCc--cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137            2 LDISHTTIR--ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF   58 (312)
Q Consensus         2 L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~   58 (312)
                      ++-+++.++  .+|.++  -.+|++|+|++| .+..+|.+++..+++|++|++.+|.+.
T Consensus        13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           13 VDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence            456777887  888532  247999999999 899999998999999999999998763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.06  E-value=0.0021  Score=56.94  Aligned_cols=45  Identities=7%  Similarity=0.115  Sum_probs=36.6

Q ss_pred             Ccccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137            9 IRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT   55 (312)
Q Consensus         9 i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~   55 (312)
                      |+.++ ..|.++.+|+.+.+..  .++.++..+|.+|.+|+.+++..+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~  104 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS  104 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC
Confidence            45565 5678889999999975  488898888999999999999764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.03  E-value=0.011  Score=52.08  Aligned_cols=43  Identities=7%  Similarity=0.157  Sum_probs=22.9

Q ss_pred             Ccccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEe
Q 045137            9 IRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRML   53 (312)
Q Consensus         9 i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~   53 (312)
                      ++.++ ..|..+.+|+.+.+..+  +..++..++..+.+|+.+.+.
T Consensus       102 l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp  145 (394)
T 4gt6_A          102 VKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIP  145 (394)
T ss_dssp             CCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECC
T ss_pred             eeEechhhchhcccceeeccCCc--cceehhhhhhhhccccccccc
Confidence            33443 34555566665555432  445555555666666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.36  E-value=0.065  Score=47.15  Aligned_cols=47  Identities=17%  Similarity=0.197  Sum_probs=35.8

Q ss_pred             Ccccc-HHhhCCCCCcEEecCCCC--CccccCchhhhccccccEEEEecc
Q 045137            9 IRELP-EELKLLVNLKCLNLRWTG--ALIRIPRGLISKFSRLRVLRMLGT   55 (312)
Q Consensus         9 i~~lp-~~i~~L~~L~~L~L~~~~--~~~~lp~~~i~~l~~L~~L~l~~~   55 (312)
                      |+.++ ..|.++.+|+.+.+..+.  .+..++..+|..+.+|+.+.+..+
T Consensus        75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~  124 (394)
T 4gt6_A           75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS  124 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT
T ss_pred             eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc
Confidence            44454 457888999999997652  477888888999999998877543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.22  E-value=0.088  Score=45.94  Aligned_cols=34  Identities=3%  Similarity=-0.024  Sum_probs=16.7

Q ss_pred             CCCCCcEEecCCCCCccccCchhhhccccccEEEEe
Q 045137           18 LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRML   53 (312)
Q Consensus        18 ~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~   53 (312)
                      .-.+|+.+.+..  .++.|+..+|.+|.+|+.+.+.
T Consensus        44 ~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp   77 (379)
T 4h09_A           44 DRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVA   77 (379)
T ss_dssp             GGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEEC
T ss_pred             cccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeC
Confidence            334455554433  2444555555555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.59  E-value=0.034  Score=40.77  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCC
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTG   31 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~   31 (312)
                      +|+|++|.|+.+| ..|..+++|++|+|++|.
T Consensus        35 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           35 ELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4799999999998 667899999999999993

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.97  E-value=0.41  Score=41.59  Aligned_cols=61  Identities=21%  Similarity=0.179  Sum_probs=44.2

Q ss_pred             hhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEee
Q 045137          130 TAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFK  202 (312)
Q Consensus       130 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~  202 (312)
                      .++..+.+|+.+.+.+. .++.++...+.         .+.+|+.+.+.+  .++.+.  .+.++.+|+.+.+..
T Consensus       280 ~aF~~c~~L~~i~l~~~-~i~~I~~~aF~---------~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNS-AIETLEPRVFM---------DCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTTCTTCCEEEECCT-TCCEECTTTTT---------TCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccccc-ccceehhhhhc---------CCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence            46677788888888643 56666655554         788899998865  366655  677888999888754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.39  E-value=0.18  Score=39.73  Aligned_cols=118  Identities=14%  Similarity=0.008  Sum_probs=67.2

Q ss_pred             hhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEE
Q 045137           16 LKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLE   90 (312)
Q Consensus        16 i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~   90 (312)
                      ..+-+.|+.|+|+++..+..     +-. ++..-..|+.|++++|.+..-..           ......|..-+.|+.|+
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga-----------~alA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEA-----------RGLIELIETSPSLRVLN  104 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHH-----------TTHHHHHHHCSSCCEEE
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHH-----------HHHHHHHhcCCccCeEe
Confidence            34557899999987534443     222 24555789999999888854221           13334455567788888


Q ss_pred             EEecChh--hHHHHhhcccccccceEEEEeecCC--Ccc---ccchhhhcCccccceEEecc
Q 045137           91 LTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGD--KKS---IIDATAFTDLNHLNELWIDN  145 (312)
Q Consensus        91 l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~--~~~---~~~~~~l~~l~~L~~L~l~~  145 (312)
                      ++.+.+.  ....+...-..-..|+.|++.++..  ...   ..+...+..-+.|+.|+++.
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            8866542  1222211111112688888875321  111   12334566556788888864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.20  E-value=0.32  Score=38.29  Aligned_cols=89  Identities=15%  Similarity=-0.001  Sum_probs=42.7

Q ss_pred             hccccccEEEEecc-cccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhh-----H-HHHhhcccccccceE
Q 045137           42 SKFSRLRVLRMLGT-GGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA-----L-QILLSSNKLKSCIRS  114 (312)
Q Consensus        42 ~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~-----~-~~l~~l~~l~~~L~~  114 (312)
                      .+-+.|++|+++++ .+..-+           .......|..-+.|+.|+++.+....     + ..+..-+    .|++
T Consensus        38 ~~n~~L~~L~L~~nn~igd~g-----------a~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~----tL~~  102 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKER-----------IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP----SLRV  102 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHH-----------HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS----SCCE
T ss_pred             hcCCCccEEECCCCCCCCHHH-----------HHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC----ccCe
Confidence            33456777777664 442110           11233445555667777766554321     1 1222223    5677


Q ss_pred             EEEeecCCCc--cccchhhhcCccccceEEecc
Q 045137          115 LYLYLTGDKK--SIIDATAFTDLNHLNELWIDN  145 (312)
Q Consensus       115 L~l~~~~~~~--~~~~~~~l~~l~~L~~L~l~~  145 (312)
                      |+++......  ...+..++..-..|++|++++
T Consensus       103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             EecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            7776543221  112223444445577777764

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=80.61  E-value=1.5  Score=30.20  Aligned_cols=49  Identities=10%  Similarity=0.101  Sum_probs=41.2

Q ss_pred             CCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137            5 SHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT   55 (312)
Q Consensus         5 s~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~   55 (312)
                      .|..|+.+. ..|..+.+|+.+.+-.+  +..|...+|.+|.+|+.+.+...
T Consensus         4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            4 EGEPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCCccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence            355778886 77899999999999875  77888888999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.61
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.55
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.47
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.24
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.09
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.03
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.77
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.63
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.66

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=6.3e-17  Score=137.89  Aligned_cols=241  Identities=17%  Similarity=0.115  Sum_probs=152.3

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.|+++| .+|.++++|++|++++| .+..+++.++.++++|++|++.+|.+..+|..                
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~----------------   97 (305)
T d1xkua_          35 LLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEK----------------   97 (305)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS----------------
T ss_pred             EEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEecccCCccCcCccc----------------
Confidence            3677777777777 35777777777777777 66666555577777777777777776544321                


Q ss_pred             ccCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137           80 LLGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT  157 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~  157 (312)
                        ....+..+....+....+.  .+....    ..+.+................+..+++|+.+++.++ .+..++..  
T Consensus        98 --~~~~l~~L~~~~n~l~~l~~~~~~~~~----~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~--  168 (305)
T d1xkua_          98 --MPKTLQELRVHENEITKVRKSVFNGLN----QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG--  168 (305)
T ss_dssp             --CCTTCCEEECCSSCCCBBCHHHHTTCT----TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS--
T ss_pred             --hhhhhhhhhccccchhhhhhhhhhccc----cccccccccccccccCCCccccccccccCccccccC-CccccCcc--
Confidence              1123444444333222211  122222    344555544433333333356777788888888866 34433221  


Q ss_pred             ccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeec
Q 045137          158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDL  236 (312)
Q Consensus       158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  236 (312)
                                .+++|++|++.++......+ .+..++.+++|++++|.. ..+..           .....+++|++|++
T Consensus       169 ----------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l-~~~~~-----------~~~~~l~~L~~L~L  226 (305)
T d1xkua_         169 ----------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-SAVDN-----------GSLANTPHLRELHL  226 (305)
T ss_dssp             ----------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC-CEECT-----------TTGGGSTTCCEEEC
T ss_pred             ----------cCCccCEEECCCCcCCCCChhHhhccccccccccccccc-ccccc-----------ccccccccceeeec
Confidence                      57899999999884444444 678889999999988754 33311           13456799999999


Q ss_pred             cccccccccccCCcCCCCccEEEecCCCCCCCCCCCCcc------ccccceEeeehHhhhh
Q 045137          237 SYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNS------AKERKFVIRGEEDWWN  291 (312)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~------~~~~l~~i~~~~~~~~  291 (312)
                      +++ .++.++.....+++|+.|+++++ +|+.++.....      ....+..+.-..+-|.
T Consensus       227 ~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         227 NNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccc-cccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            997 68888766778999999999995 78888754432      2255555554444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=3.1e-16  Score=127.82  Aligned_cols=202  Identities=17%  Similarity=0.168  Sum_probs=145.0

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      +++.+++.++. .++.|.+|++|++.+| .++.++ + +.+|++|++|++++|.+..                 +..+..
T Consensus        25 ~l~~~~~~d~~-~~~~l~~L~~L~l~~~-~i~~l~-~-l~~l~~L~~L~ls~n~i~~-----------------~~~l~~   83 (227)
T d1h6ua2          25 AAGKSNVTDTV-TQADLDGITTLSAFGT-GVTTIE-G-VQYLNNLIGLELKDNQITD-----------------LAPLKN   83 (227)
T ss_dssp             HTTCSSTTSEE-CHHHHHTCCEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCCC-----------------CGGGTT
T ss_pred             HhCCCCcCCcC-CHHHcCCcCEEECCCC-CCCcch-h-HhcCCCCcEeecCCceeec-----------------cccccc
Confidence            45666676653 5677899999999999 888885 4 8999999999999998743                 334677


Q ss_pred             CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccc
Q 045137           83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRK  162 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  162 (312)
                      +.+++.++++.+....+..+.+++    .++.+.+.++....   . ..+...+.+..+.+..+. +...  ....    
T Consensus        84 l~~l~~l~~~~n~~~~i~~l~~l~----~L~~l~l~~~~~~~---~-~~~~~~~~~~~l~~~~~~-~~~~--~~~~----  148 (227)
T d1h6ua2          84 LTKITELELSGNPLKNVSAIAGLQ----SIKTLDLTSTQITD---V-TPLAGLSNLQVLYLDLNQ-ITNI--SPLA----  148 (227)
T ss_dssp             CCSCCEEECCSCCCSCCGGGTTCT----TCCEEECTTSCCCC---C-GGGTTCTTCCEEECCSSC-CCCC--GGGG----
T ss_pred             cccccccccccccccccccccccc----cccccccccccccc---c-chhccccchhhhhchhhh-hchh--hhhc----
Confidence            888888888876665666666666    78888877654322   1 345556677788877653 3221  1122    


Q ss_pred             cCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccc
Q 045137          163 RREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPEL  242 (312)
Q Consensus       163 ~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  242 (312)
                           ..++|++|.+.+| .+.+.+.++++++|++|++++|. ++++.             ....+++|++|+++++ ++
T Consensus       149 -----~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~Ls~n~-l~~l~-------------~l~~l~~L~~L~Ls~N-~l  207 (227)
T d1h6ua2         149 -----GLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDIS-------------PLASLPNLIEVHLKNN-QI  207 (227)
T ss_dssp             -----GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCCEEECTTS-CC
T ss_pred             -----ccccccccccccc-ccccchhhcccccceecccCCCc-cCCCh-------------hhcCCCCCCEEECcCC-cC
Confidence                 6788999999888 66666778889999999998874 44431             2356788999999887 57


Q ss_pred             cccccCCcCCCCccEEEecC
Q 045137          243 KSIFWKPLPFTHLKEMGVRA  262 (312)
Q Consensus       243 ~~~~~~~~~~~~L~~L~i~~  262 (312)
                      +++.. ...+++|+.|++++
T Consensus       208 t~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         208 SDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CBCGG-GTTCTTCCEEEEEE
T ss_pred             CCCcc-cccCCCCCEEEeeC
Confidence            77653 45788888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-16  Score=132.03  Aligned_cols=165  Identities=18%  Similarity=0.176  Sum_probs=102.0

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      +.+++.++.+|.++.  +++++|+|++| .+..+|.+.+.++++|++|++++|.+..++                 ....
T Consensus        16 ~C~~~~L~~iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-----------------~~~~   75 (266)
T d1p9ag_          16 NCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQ-----------------VDGT   75 (266)
T ss_dssp             ECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEE-----------------CCSC
T ss_pred             EccCCCCCeeCcCcC--cCCCEEECcCC-cCCCcCHHHhhccccccccccccccccccc-----------------cccc
Confidence            556778999997664  58999999999 899998877999999999999999885432                 2345


Q ss_pred             CCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137           83 LKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR  161 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  161 (312)
                      +++|+.|+++.+...... .+..++    .|+.|+++++...... . ..+..+.++++|++.++ .+..++.....   
T Consensus        76 l~~L~~L~Ls~N~l~~~~~~~~~l~----~L~~L~l~~~~~~~~~-~-~~~~~l~~l~~L~l~~n-~l~~l~~~~~~---  145 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLP-L-GALRGLGELQELYLKGN-ELKTLPPGLLT---  145 (266)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTTCT----TCCEEECCSSCCCCCC-S-STTTTCTTCCEEECTTS-CCCCCCTTTTT---
T ss_pred             ccccccccccccccccccccccccc----ccccccccccccceee-c-ccccccccccccccccc-ccceecccccc---
Confidence            677888887765443221 122333    5556665544322111 1 23445556666666543 34444333332   


Q ss_pred             ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeecc
Q 045137          162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~  204 (312)
                            .+++|+.+++++| +++.++  .++.+++|++|++++|.
T Consensus       146 ------~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         146 ------PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             ------TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ------ccccchhcccccc-cccccCccccccccccceeecccCC
Confidence                  4566666666666 555544  35556666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.6e-16  Score=128.23  Aligned_cols=182  Identities=20%  Similarity=0.261  Sum_probs=137.6

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|++++|.|+.++ +++++++|++|++++| .+..+++  +.++++|+++++.+|.+.                 .+..+
T Consensus        45 ~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~--l~~l~~l~~l~~~~n~~~-----------------~i~~l  103 (227)
T d1h6ua2          45 TLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLK-----------------NVSAI  103 (227)
T ss_dssp             EEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCS-----------------CCGGG
T ss_pred             EEECCCCCCCcch-hHhcCCCCcEeecCCc-eeecccc--cccccccccccccccccc-----------------ccccc
Confidence            3688999999994 7999999999999999 7888775  899999999999998764                 34557


Q ss_pred             cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137           81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV  160 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  160 (312)
                      ..+++|+.+++..+.......+....    .++.+.+..+....   . ..+..+++|++|++.++ .+...  ..+.  
T Consensus       104 ~~l~~L~~l~l~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~---~-~~~~~~~~L~~L~l~~n-~~~~~--~~l~--  170 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDVTPLAGLS----NLQVLYLDLNQITN---I-SPLAGLTNLQYLSIGNA-QVSDL--TPLA--  170 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCCGGGTTCT----TCCEEECCSSCCCC---C-GGGGGCTTCCEEECCSS-CCCCC--GGGT--
T ss_pred             cccccccccccccccccccchhcccc----chhhhhchhhhhch---h-hhhcccccccccccccc-ccccc--hhhc--
Confidence            77888998888755544444444444    66777766543221   1 34667788999999876 33322  2232  


Q ss_pred             cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccc
Q 045137          161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY  238 (312)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (312)
                             .+++|+.|++++| .+++++.++.+++|++|++++|. ++.+.             ....+++|+.|++++
T Consensus       171 -------~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N~-lt~i~-------------~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         171 -------NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVS-------------PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -------TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCG-------------GGTTCTTCCEEEEEE
T ss_pred             -------ccccceecccCCC-ccCCChhhcCCCCCCEEECcCCc-CCCCc-------------ccccCCCCCEEEeeC
Confidence                   7899999999999 78888889999999999999985 55542             345778899988764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.3e-15  Score=133.38  Aligned_cols=165  Identities=17%  Similarity=0.163  Sum_probs=90.2

Q ss_pred             ccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137           80 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI  159 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  159 (312)
                      ...+.+++.+.++.+....+.......    +++.|++.++... .  + ..+..+++|+.|++.++ .+..+.  ... 
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~~~~~----~L~~L~l~~n~l~-~--~-~~l~~l~~L~~L~l~~n-~l~~~~--~~~-  260 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPLGILT----NLDELSLNGNQLK-D--I-GTLASLTNLTDLDLANN-QISNLA--PLS-  260 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCT----TCCEEECCSSCCC-C--C-GGGGGCTTCSEEECCSS-CCCCCG--GGT-
T ss_pred             cccccccceeeccCCccCCCCcccccC----CCCEEECCCCCCC-C--c-chhhcccccchhccccC-ccCCCC--ccc-
Confidence            444556666666655443333333344    7888887765322 1  2 45667778888888765 343322  122 


Q ss_pred             ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCcc----------ccCCCCCCCCccCC
Q 045137          160 VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKI----------AENPEMMGHISPFE  229 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  229 (312)
                              .+++|++|+++++ .+..++.+..++.++.+.+..+... .+......          ..+..+ .....++
T Consensus       261 --------~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~l~-~~~~~~~~~~l~~L~ls~n~l~~l-~~l~~l~  329 (384)
T d2omza2         261 --------GLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDI-SPVSSLT  329 (384)
T ss_dssp             --------TCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCS-CCGGGGGCTTCSEEECCSSCCSCC-GGGGGCT
T ss_pred             --------ccccCCEeeccCc-ccCCCCccccccccccccccccccc-cccccchhcccCeEECCCCCCCCC-cccccCC
Confidence                    5677777777766 5555555556666666665554321 11000000          000000 1245677


Q ss_pred             CcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCC
Q 045137          230 NLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLP  270 (312)
Q Consensus       230 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~  270 (312)
                      +|++|+++++ .++.+. ....+++|+.|+++++ ++++++
T Consensus       330 ~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         330 KLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             TCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCG
T ss_pred             CCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCCh
Confidence            7777777776 455543 2455777777777765 566654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.9e-17  Score=137.22  Aligned_cols=210  Identities=18%  Similarity=0.145  Sum_probs=130.4

Q ss_pred             hCCCCCcEEecCCCCCccc-cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137           17 KLLVNLKCLNLRWTGALIR-IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS   95 (312)
Q Consensus        17 ~~L~~L~~L~L~~~~~~~~-lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~   95 (312)
                      ....+|++||+++| .+.. ....++..+++|++|++.+|.+..               ..+..+..+++|+.|+++.+.
T Consensus        43 ~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~---------------~~~~~l~~~~~L~~L~Ls~c~  106 (284)
T d2astb2          43 FSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSD---------------PIVNTLAKNSNLVRLNLSGCS  106 (284)
T ss_dssp             CCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCH---------------HHHHHHTTCTTCSEEECTTCB
T ss_pred             ccCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCc---------------HHHHHHhcCCCCcCccccccc
Confidence            34568888888888 4442 223346788889999888887632               556667778888888886532


Q ss_pred             -h--hhHHHH-hhcccccccceEEEEeecCCCccccchhhhcC-ccccceEEeccCc-CcceeeeeccccccccCCCCcc
Q 045137           96 -Y--HALQIL-LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTD-LNHLNELWIDNGI-ELEELKIDYTEIVRKRREPFVF  169 (312)
Q Consensus        96 -~--~~~~~l-~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~-~l~~l~~~~~~~~~~~~~~~~~  169 (312)
                       .  ..+..+ ..++    +|++|++++|....+......+.. .++|+.|++++|. .+....+.....        .+
T Consensus       107 ~itd~~l~~l~~~~~----~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~--------~~  174 (284)
T d2astb2         107 GFSEFALQTLLSSCS----RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--------RC  174 (284)
T ss_dssp             SCCHHHHHHHHHHCT----TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--------HC
T ss_pred             cccccccchhhHHHH----hccccccccccccccccchhhhcccccccchhhhccccccccccccccccc--------cc
Confidence             2  122222 2344    788888888765554443333333 3678888888753 233322222211        67


Q ss_pred             cccceEeecCCCCccc--CCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccccc
Q 045137          170 HSLHLVTIYSCHKLKD--STFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFW  247 (312)
Q Consensus       170 ~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  247 (312)
                      ++|++|++++|..+++  +..++.+++|++|++++|..+++...           .....+|+|+.|++.+|..-..+..
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l-----------~~L~~~~~L~~L~l~~~~~d~~l~~  243 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-----------LELGEIPTLKTLQVFGIVPDGTLQL  243 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----------GGGGGCTTCCEEECTTSSCTTCHHH
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH-----------HHHhcCCCCCEEeeeCCCCHHHHHH
Confidence            8899999988877765  44677888899999988876655311           1335678888888888722111111


Q ss_pred             CCcCCCCccEEEecCCCCCCCC
Q 045137          248 KPLPFTHLKEMGVRACDQLRKL  269 (312)
Q Consensus       248 ~~~~~~~L~~L~i~~c~~L~~l  269 (312)
                      -...+|+|+   + +|.+++.+
T Consensus       244 l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         244 LKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             HHHHSTTSE---E-SCCCSCCT
T ss_pred             HHHhCcccc---c-cCccCCCC
Confidence            123466654   3 56666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=7.8e-16  Score=123.86  Aligned_cols=179  Identities=18%  Similarity=0.209  Sum_probs=128.2

Q ss_pred             cCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCC
Q 045137            4 ISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGL   83 (312)
Q Consensus         4 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L   83 (312)
                      +..+.+.... ....|.+|++|++++| .+..++.  +..+++|++|++++|.+..                 +..+..+
T Consensus        31 l~~~~~~~~~-~~~~L~~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~L~~n~i~~-----------------l~~~~~l   89 (210)
T d1h6ta2          31 LKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTD-----------------IKPLANL   89 (210)
T ss_dssp             TTCSCTTSEE-CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCC-----------------CGGGTTC
T ss_pred             hCcCccCCcc-CHHHhcCccEEECcCC-CCCCchh--HhhCCCCCEEeCCCccccC-----------------ccccccC
Confidence            4455555432 1245778889999998 7887764  8889999999999987743                 2345678


Q ss_pred             CCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccccc
Q 045137           84 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKR  163 (312)
Q Consensus        84 ~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~  163 (312)
                      ++|+.++++.+....++.+..++    .|+.|++.++...   .+ ..+..+++++.+++..+ .+...  ....     
T Consensus        90 ~~L~~L~l~~n~i~~l~~l~~l~----~L~~L~l~~~~~~---~~-~~l~~l~~l~~l~~~~n-~l~~~--~~~~-----  153 (210)
T d1h6ta2          90 KNLGWLFLDENKVKDLSSLKDLK----KLKSLSLEHNGIS---DI-NGLVHLPQLESLYLGNN-KITDI--TVLS-----  153 (210)
T ss_dssp             TTCCEEECCSSCCCCGGGGTTCT----TCCEEECTTSCCC---CC-GGGGGCTTCCEEECCSS-CCCCC--GGGG-----
T ss_pred             ccccccccccccccccccccccc----ccccccccccccc---cc-ccccccccccccccccc-ccccc--cccc-----
Confidence            88888988877766666666666    7888888766432   22 45677788888888765 34332  2222     


Q ss_pred             CCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccc
Q 045137          164 REPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY  238 (312)
Q Consensus       164 ~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (312)
                          .+++|+.+++++| .+.+++.++.+++|+.|++++|. ++++ +            ....+++|++|++++
T Consensus       154 ----~l~~L~~l~l~~n-~l~~i~~l~~l~~L~~L~Ls~N~-i~~l-~------------~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 ----RLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNH-ISDL-R------------ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----GCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBC-G------------GGTTCTTCSEEEEEE
T ss_pred             ----ccccccccccccc-cccccccccCCCCCCEEECCCCC-CCCC-h------------hhcCCCCCCEEEccC
Confidence                6889999999998 77778788889999999998885 4443 1            345678899998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.3e-16  Score=130.76  Aligned_cols=169  Identities=18%  Similarity=0.118  Sum_probs=131.3

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +|+|++|.|+.+| ..|+.+++|++|+|++| .++.+|.  ++.+++|++|++++|.+...                ...
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~--~~~l~~L~~L~Ls~N~l~~~----------------~~~   95 (266)
T d1p9ag_          35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQLQSL----------------PLL   95 (266)
T ss_dssp             EEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSSCCSSC----------------CCC
T ss_pred             EEECcCCcCCCcCHHHhhccccccccccccc-ccccccc--cccccccccccccccccccc----------------ccc
Confidence            4899999999998 67999999999999999 8998886  78899999999999988632                334


Q ss_pred             ccCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137           80 LLGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT  157 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~  157 (312)
                      +..+++|+.++++.+....+.  .+..+.    +++.|.+.+... ..... ..+..+++|+.++++++ .++.+....+
T Consensus        96 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~----~l~~L~l~~n~l-~~l~~-~~~~~l~~l~~l~l~~N-~l~~~~~~~~  168 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNRLTSLPLGALRGLG----ELQELYLKGNEL-KTLPP-GLLTPTPKLEKLSLANN-NLTELPAGLL  168 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCT----TCCEEECTTSCC-CCCCT-TTTTTCTTCCEEECTTS-CCSCCCTTTT
T ss_pred             cccccccccccccccccceeecccccccc----cccccccccccc-ceecc-ccccccccchhcccccc-cccccCcccc
Confidence            567788999998866443222  223344    778888876532 22222 45677889999999976 6776665555


Q ss_pred             ccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccc
Q 045137          158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRA  205 (312)
Q Consensus       158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~  205 (312)
                      .         .+++|++|+|++| .++.+| .+..+++|+.|++++++.
T Consensus       169 ~---------~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         169 N---------GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             T---------TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             c---------cccccceeecccC-CCcccChhHCCCCCCCEEEecCCCC
Confidence            4         7899999999999 788888 677899999999998764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.61  E-value=1.3e-15  Score=130.11  Aligned_cols=122  Identities=18%  Similarity=0.161  Sum_probs=83.2

Q ss_pred             cccCCCCCc---cccHHhhCCCCCcEEecCC-CCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137            2 LDISHTTIR---ELPEELKLLVNLKCLNLRW-TGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI   77 (312)
Q Consensus         2 L~Ls~~~i~---~lp~~i~~L~~L~~L~L~~-~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (312)
                      |+|+++.+.   .+|.++++|++|++|+|++ |...+.+|+. ++++++|++|++++|.+..               ...
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~---------------~~~  118 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSG---------------AIP  118 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEE---------------ECC
T ss_pred             EECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccc---------------ccc
Confidence            788888876   5899999999999999987 5334479987 9999999999999998865               333


Q ss_pred             hhccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCcccc-ceEEecc
Q 045137           78 QELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHL-NELWIDN  145 (312)
Q Consensus        78 ~~l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L-~~L~l~~  145 (312)
                      ..+..+.+|+.+++..+...  ....+.+++    .++.+++.+....  ..++..+..+..+ +.+.++.
T Consensus       119 ~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~----~L~~l~l~~n~l~--~~ip~~~~~l~~l~~~l~~~~  183 (313)
T d1ogqa_         119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLP----NLVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCT----TCCEEECCSSCCE--EECCGGGGCCCTTCCEEECCS
T ss_pred             ccccchhhhcccccccccccccCchhhccCc----ccceeeccccccc--ccccccccccccccccccccc
Confidence            44566777777777654322  113455555    6777777654322  1233455555554 5555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=5.7e-15  Score=129.17  Aligned_cols=238  Identities=17%  Similarity=0.155  Sum_probs=155.0

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      |+++++.|+.+ ++++.|++|++|++++| .++.+|+  ++++++|++|++++|.+..++                 .+.
T Consensus        49 L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N-~l~~l~~--l~~L~~L~~L~L~~n~i~~i~-----------------~l~  107 (384)
T d2omza2          49 LQADRLGIKSI-DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADIT-----------------PLA  107 (384)
T ss_dssp             EECCSSCCCCC-TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-----------------GGT
T ss_pred             EECCCCCCCCc-cccccCCCCCEEeCcCC-cCCCCcc--ccCCccccccccccccccccc-----------------ccc
Confidence            67888899888 57899999999999999 8888876  899999999999998876432                 233


Q ss_pred             CCCCceEEEEEecChhh---------------------------------------------------------------
Q 045137           82 GLKYLEVLELTLGSYHA---------------------------------------------------------------   98 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~---------------------------------------------------------------   98 (312)
                      .+++|+.+++..+....                                                               
T Consensus       108 ~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         108 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            33334433332111100                                                               


Q ss_pred             --HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEe
Q 045137           99 --LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVT  176 (312)
Q Consensus        99 --~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~  176 (312)
                        ......++    .++.+.+.++...   .+ .....+++|++|+++++ .++.++  ...         .+++|+.++
T Consensus       188 ~~~~~~~~l~----~~~~l~l~~n~i~---~~-~~~~~~~~L~~L~l~~n-~l~~~~--~l~---------~l~~L~~L~  247 (384)
T d2omza2         188 SDISVLAKLT----NLESLIATNNQIS---DI-TPLGILTNLDELSLNGN-QLKDIG--TLA---------SLTNLTDLD  247 (384)
T ss_dssp             CCCGGGGGCT----TCSEEECCSSCCC---CC-GGGGGCTTCCEEECCSS-CCCCCG--GGG---------GCTTCSEEE
T ss_pred             cccccccccc----ccceeeccCCccC---CC-CcccccCCCCEEECCCC-CCCCcc--hhh---------cccccchhc
Confidence              01111122    4455555543211   11 23456678999999976 455432  232         789999999


Q ss_pred             ecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccC-------C--CCCCCCccCCCcCeeecccccccccccc
Q 045137          177 IYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAEN-------P--EMMGHISPFENLKSLDLSYLPELKSIFW  247 (312)
Q Consensus       177 l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~  247 (312)
                      +++| .+..++.++.+++|++|+++++... ...+.......       .  ........++++++|+++++ +++.+. 
T Consensus       248 l~~n-~l~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~-  323 (384)
T d2omza2         248 LANN-QISNLAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDIS-  323 (384)
T ss_dssp             CCSS-CCCCCGGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCG-
T ss_pred             cccC-ccCCCCcccccccCCEeeccCcccC-CCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCCc-
Confidence            9999 7888888999999999999877542 22111100000       0  00123566788899999886 566653 


Q ss_pred             CCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehH
Q 045137          248 KPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEE  287 (312)
Q Consensus       248 ~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~  287 (312)
                      ....+++|+.|++++| +++.++.  ....++++.+....
T Consensus       324 ~l~~l~~L~~L~L~~n-~l~~l~~--l~~l~~L~~L~l~~  360 (384)
T d2omza2         324 PVSSLTKLQRLFFANN-KVSDVSS--LANLTNINWLSAGH  360 (384)
T ss_dssp             GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCS
T ss_pred             ccccCCCCCEEECCCC-CCCCChh--HcCCCCCCEEECCC
Confidence            2567999999999998 7888773  22236777776554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.2e-15  Score=121.74  Aligned_cols=176  Identities=17%  Similarity=0.183  Sum_probs=133.5

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      .++.+.++..+ ....+.++++|++++| .+.+++.  ++.+++|++|++++|.+..                 +..+..
T Consensus        24 ~l~~~~~~~~~-~~~~l~~l~~L~l~~~-~i~~l~~--l~~l~nL~~L~Ls~N~l~~-----------------~~~l~~   82 (199)
T d2omxa2          24 VLGKTNVTDTV-SQTDLDQVTTLQADRL-GIKSIDG--VEYLNNLTQINFSNNQLTD-----------------ITPLKN   82 (199)
T ss_dssp             HTTCSSTTSEE-CHHHHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCC-----------------CGGGTT
T ss_pred             HhCCCCCCCcc-CHHHhcCCCEEECCCC-CCCCccc--cccCCCcCcCccccccccC-----------------cccccC
Confidence            45566666553 3357889999999999 8888864  8999999999999998753                 234778


Q ss_pred             CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccc
Q 045137           83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRK  162 (312)
Q Consensus        83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  162 (312)
                      +++|+.++++.+....++.+..++    .|+.+++.++....   . ..+..+++|+.|+++++ .+..++  .+.    
T Consensus        83 l~~L~~L~l~~n~~~~~~~l~~l~----~L~~L~l~~~~~~~---~-~~~~~l~~L~~L~l~~n-~l~~~~--~l~----  147 (199)
T d2omxa2          83 LTKLVDILMNNNQIADITPLANLT----NLTGLTLFNNQITD---I-DPLKNLTNLNRLELSSN-TISDIS--ALS----  147 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCT----TCSEEECCSSCCCC---C-GGGTTCTTCSEEECCSS-CCCCCG--GGT----
T ss_pred             Cccccccccccccccccccccccc----cccccccccccccc---c-cccchhhhhHHhhhhhh-hhcccc--ccc----
Confidence            889999999877766666666666    88999988764332   2 45677899999999876 454432  233    


Q ss_pred             cCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137          163 RREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL  234 (312)
Q Consensus       163 ~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  234 (312)
                           .+++|+.|++.+| .+++++.++++++|++|++++|. ++++ +            ....+++|+.|
T Consensus       148 -----~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls~N~-i~~i-~------------~l~~L~~L~~L  199 (199)
T d2omxa2         148 -----GLTSLQQLNFSSN-QVTDLKPLANLTTLERLDISSNK-VSDI-S------------VLAKLTNLESL  199 (199)
T ss_dssp             -----TCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCC-G------------GGGGCTTCSEE
T ss_pred             -----ccccccccccccc-cccCCccccCCCCCCEEECCCCC-CCCC-c------------cccCCCCCCcC
Confidence                 7899999999998 78888889999999999999986 4543 1            23567777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=3e-15  Score=119.32  Aligned_cols=182  Identities=15%  Similarity=0.126  Sum_probs=126.5

Q ss_pred             CCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhH
Q 045137           20 VNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL   99 (312)
Q Consensus        20 ~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~   99 (312)
                      .+...+.++.+ .+.+.+.  ...+.++++|++.+|.+.                 .+.+++.+++|+.|+++.+....+
T Consensus        18 ~~~i~~~l~~~-~~~~~~~--~~~l~~l~~L~l~~~~i~-----------------~l~~l~~l~nL~~L~Ls~N~l~~~   77 (199)
T d2omxa2          18 AEKMKTVLGKT-NVTDTVS--QTDLDQVTTLQADRLGIK-----------------SIDGVEYLNNLTQINFSNNQLTDI   77 (199)
T ss_dssp             HHHHHHHTTCS-STTSEEC--HHHHTTCCEEECTTSCCC-----------------CCTTGGGCTTCCEEECCSSCCCCC
T ss_pred             HHHHHHHhCCC-CCCCccC--HHHhcCCCEEECCCCCCC-----------------CccccccCCCcCcCccccccccCc
Confidence            33344556666 5555443  467888999999888774                 245677788899999887776666


Q ss_pred             HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecC
Q 045137          100 QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYS  179 (312)
Q Consensus       100 ~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  179 (312)
                      ..+.+++    +|+.|++.++...   .+ ..+..+++|+.|+++++.. ...  ....         .+++|+.|++++
T Consensus        78 ~~l~~l~----~L~~L~l~~n~~~---~~-~~l~~l~~L~~L~l~~~~~-~~~--~~~~---------~l~~L~~L~l~~  137 (199)
T d2omxa2          78 TPLKNLT----KLVDILMNNNQIA---DI-TPLANLTNLTGLTLFNNQI-TDI--DPLK---------NLTNLNRLELSS  137 (199)
T ss_dssp             GGGTTCT----TCCEEECCSSCCC---CC-GGGTTCTTCSEEECCSSCC-CCC--GGGT---------TCTTCSEEECCS
T ss_pred             ccccCCc----ccccccccccccc---cc-ccccccccccccccccccc-ccc--cccc---------hhhhhHHhhhhh
Confidence            6666666    7888888765332   22 3577888899999886633 222  2232         678899999988


Q ss_pred             CCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEE
Q 045137          180 CHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEM  258 (312)
Q Consensus       180 ~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  258 (312)
                      | .+..++.+..+++|++|++.+|.. .++.             ....+++|++|+++++ .++++. ....+++|++|
T Consensus       138 n-~l~~~~~l~~~~~L~~L~l~~n~l-~~l~-------------~l~~l~~L~~L~ls~N-~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         138 N-TISDISALSGLTSLQQLNFSSNQV-TDLK-------------PLANLTTLERLDISSN-KVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             S-CCCCCGGGTTCTTCSEEECCSSCC-CCCG-------------GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEE
T ss_pred             h-hhcccccccccccccccccccccc-cCCc-------------cccCCCCCCEEECCCC-CCCCCc-cccCCCCCCcC
Confidence            8 677777788899999999888753 3331             2456788999999887 577764 24567777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.1e-15  Score=124.11  Aligned_cols=212  Identities=15%  Similarity=0.162  Sum_probs=131.2

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      +.++.+++.+|..+.  ..+++|+|++| .++.+|++.+.++++|++|+++++.+..++               ......
T Consensus        17 ~c~~~~L~~iP~~ip--~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~---------------~~~~~~   78 (284)
T d1ozna_          17 SCPQQGLQAVPVGIP--AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARID---------------AAAFTG   78 (284)
T ss_dssp             ECCSSCCSSCCTTCC--TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEEC---------------TTTTTT
T ss_pred             EcCCCCCCccCCCCC--CCCCEEECcCC-cCCCCCHHHhhccccccccccccccccccc---------------cccccc
Confidence            345566888886553  57899999999 899999877999999999999998886532               233334


Q ss_pred             CCCceEEEEEec-Chhh--HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137           83 LKYLEVLELTLG-SYHA--LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI  159 (312)
Q Consensus        83 L~~L~~l~l~~~-~~~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  159 (312)
                      +..++.+..... ....  ...+..++    +|+.|++.++... .... ..+..+.+|+.+++.++ .++.++...+. 
T Consensus        79 ~~~~~~l~~~~~~~~~~l~~~~~~~l~----~L~~L~l~~n~~~-~~~~-~~~~~~~~L~~l~l~~N-~l~~i~~~~f~-  150 (284)
T d1ozna_          79 LALLEQLDLSDNAQLRSVDPATFHGLG----RLHTLHLDRCGLQ-ELGP-GLFRGLAALQYLYLQDN-ALQALPDDTFR-  150 (284)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCT----TCCEEECTTSCCC-CCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTT-
T ss_pred             cccccccccccccccccccchhhcccc----cCCEEecCCcccc-cccc-cccchhcccchhhhccc-cccccChhHhc-
Confidence            444554443211 1111  11233444    6777776654321 1111 34555667777777754 55555444443 


Q ss_pred             ccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecc
Q 045137          160 VRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLS  237 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  237 (312)
                              .+++|++|++++| .+..++  .+..+++|+++.+.+|.... +.+           .....+++|++|+++
T Consensus       151 --------~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~-i~~-----------~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         151 --------DLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAH-VHP-----------HAFRDLGRLMTLYLF  209 (284)
T ss_dssp             --------TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE-ECT-----------TTTTTCTTCCEEECC
T ss_pred             --------cccchhhcccccC-cccccchhhhccccccchhhhhhccccc-cCh-----------hHhhhhhhccccccc
Confidence                    5677788888877 666654  56677888888877765432 212           133556777888877


Q ss_pred             ccccccccccC-CcCCCCccEEEecC
Q 045137          238 YLPELKSIFWK-PLPFTHLKEMGVRA  262 (312)
Q Consensus       238 ~~~~l~~~~~~-~~~~~~L~~L~i~~  262 (312)
                      ++ .+..+... ...+++|+.|++++
T Consensus       210 ~N-~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         210 AN-NLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             SS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred             cc-ccccccccccccccccCEEEecC
Confidence            74 34444322 44567777777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.9e-15  Score=124.69  Aligned_cols=195  Identities=20%  Similarity=0.236  Sum_probs=144.8

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc-cccccccCCCCccccCCccchhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT-GGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|+|++|+|+.+| ..|+.+++|++|++++| .+..++...+..+..++++....+ .+..               ....
T Consensus        36 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~---------------l~~~   99 (284)
T d1ozna_          36 RIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS---------------VDPA   99 (284)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC---------------CCTT
T ss_pred             EEECcCCcCCCCCHHHhhccccccccccccc-ccccccccccccccccccccccccccccc---------------ccch
Confidence            4899999999998 67999999999999999 889888877888999999987654 3332               3345


Q ss_pred             hccCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeec
Q 045137           79 ELLGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDY  156 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~  156 (312)
                      .+..+++|+.++++.+....+.  .+....    .|+.+++.+..- ..... ..+..+++|+.|+++++ .++.+....
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~L~~l~l~~N~l-~~i~~-~~f~~~~~L~~L~l~~N-~l~~l~~~~  172 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLA----ALQYLYLQDNAL-QALPD-DTFRDLGNLTHLFLHGN-RISSVPERA  172 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCT----TCCEEECCSSCC-CCCCT-TTTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhc----ccchhhhccccc-cccCh-hHhccccchhhcccccC-cccccchhh
Confidence            6778889999998766543222  233334    788888876532 22222 46778889999999976 677776555


Q ss_pred             cccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137          157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL  234 (312)
Q Consensus       157 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  234 (312)
                      +.         .+++|+.+++++| .+..+ | .++.+++|++|+++++...... +           .....+++|++|
T Consensus       173 f~---------~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~-~-----------~~~~~~~~L~~L  230 (284)
T d1ozna_         173 FR---------GLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALP-T-----------EALAPLRALQYL  230 (284)
T ss_dssp             TT---------TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC-H-----------HHHTTCTTCCEE
T ss_pred             hc---------cccccchhhhhhc-cccccChhHhhhhhhccccccccccccccc-c-----------cccccccccCEE
Confidence            54         7899999999999 66664 4 7888999999999988754332 1           123567889999


Q ss_pred             eccccc
Q 045137          235 DLSYLP  240 (312)
Q Consensus       235 ~l~~~~  240 (312)
                      ++++.+
T Consensus       231 ~l~~N~  236 (284)
T d1ozna_         231 RLNDNP  236 (284)
T ss_dssp             ECCSSC
T ss_pred             EecCCC
Confidence            998753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.55  E-value=1.2e-15  Score=130.32  Aligned_cols=224  Identities=16%  Similarity=0.103  Sum_probs=145.3

Q ss_pred             CcccCC-CCCc-cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137            1 LLDISH-TTIR-ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|+|++ |.+. .+|.+|++|++|++|+|++| .+..+++..+..+.+|+++++..|.+..               ..+.
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L~~l~l~~N~~~~---------------~~p~  143 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSG---------------TLPP  143 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEES---------------CCCG
T ss_pred             ccccccccccccccccccccccccchhhhccc-cccccccccccchhhhcccccccccccc---------------cCch
Confidence            478886 6776 89999999999999999999 7777766668999999999999987743               4456


Q ss_pred             hccCCCCceEEEEEecChh-hH-HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeec
Q 045137           79 ELLGLKYLEVLELTLGSYH-AL-QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDY  156 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~-~~-~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~  156 (312)
                      .+..+++++.++++.+... .+ ..+..+..   .++.+.+.+..- .. ..+..+..+. ...+++..+.....++ ..
T Consensus       144 ~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~---l~~~l~~~~n~l-~~-~~~~~~~~l~-~~~l~l~~~~~~~~~~-~~  216 (313)
T d1ogqa_         144 SISSLPNLVGITFDGNRISGAIPDSYGSFSK---LFTSMTISRNRL-TG-KIPPTFANLN-LAFVDLSRNMLEGDAS-VL  216 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGCCCT---TCCEEECCSSEE-EE-ECCGGGGGCC-CSEEECCSSEEEECCG-GG
T ss_pred             hhccCcccceeeccccccccccccccccccc---cccccccccccc-cc-cccccccccc-cccccccccccccccc-cc
Confidence            7888899999988766442 11 23333331   234554443211 11 1113344433 3356665542222222 11


Q ss_pred             cccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeec
Q 045137          157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDL  236 (312)
Q Consensus       157 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  236 (312)
                      ..         .+++++.+++.++.....++.++.+++|+.|++++|.....+ +           .....+++|++|++
T Consensus       217 ~~---------~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~i-P-----------~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         217 FG---------SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL-P-----------QGLTQLKFLHSLNV  275 (313)
T ss_dssp             CC---------TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC-C-----------GGGGGCTTCCEEEC
T ss_pred             cc---------ccccccccccccccccccccccccccccccccCccCeecccC-C-----------hHHhCCCCCCEEEC
Confidence            11         678888888888843334557788889999999888643332 2           24567788999999


Q ss_pred             ccccccc-ccccCCcCCCCccEEEecCCCCCCCCC
Q 045137          237 SYLPELK-SIFWKPLPFTHLKEMGVRACDQLRKLP  270 (312)
Q Consensus       237 ~~~~~l~-~~~~~~~~~~~L~~L~i~~c~~L~~l~  270 (312)
                      +++ +++ .++ ....+++|+.+.+.+.+.+...|
T Consensus       276 s~N-~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         276 SFN-NLCGEIP-QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CSS-EEEEECC-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             cCC-cccccCC-CcccCCCCCHHHhCCCccccCCC
Confidence            885 455 333 34556777777777766666544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=1.1e-14  Score=116.98  Aligned_cols=166  Identities=16%  Similarity=0.165  Sum_probs=94.3

Q ss_pred             hccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecC
Q 045137           42 SKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG  121 (312)
Q Consensus        42 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~  121 (312)
                      ..+.+|++|++.+|.+.                 .+.+++.+++|+.|+++.+....+..+..++    +|+.|+++++.
T Consensus        43 ~~L~~L~~L~l~~~~i~-----------------~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~----~L~~L~l~~n~  101 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIK-----------------SVQGIQYLPNVTKLFLNGNKLTDIKPLANLK----NLGWLFLDENK  101 (210)
T ss_dssp             HHHHTCCEEECTTSCCC-----------------CCTTGGGCTTCCEEECCSSCCCCCGGGTTCT----TCCEEECCSSC
T ss_pred             HHhcCccEEECcCCCCC-----------------CchhHhhCCCCCEEeCCCccccCccccccCc----ccccccccccc
Confidence            44666777777766553                 2334566666777777666554444444555    66667666543


Q ss_pred             CCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEe
Q 045137          122 DKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLF  201 (312)
Q Consensus       122 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~  201 (312)
                      - ..  + +.+..+++|+.|++.++. ...+  ....         .+++++.++++++ .+.+.+....+++|+.+++.
T Consensus       102 i-~~--l-~~l~~l~~L~~L~l~~~~-~~~~--~~l~---------~l~~l~~l~~~~n-~l~~~~~~~~l~~L~~l~l~  164 (210)
T d1h6ta2         102 V-KD--L-SSLKDLKKLKSLSLEHNG-ISDI--NGLV---------HLPQLESLYLGNN-KITDITVLSRLTKLDTLSLE  164 (210)
T ss_dssp             C-CC--G-GGGTTCTTCCEEECTTSC-CCCC--GGGG---------GCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECC
T ss_pred             c-cc--c-cccccccccccccccccc-cccc--cccc---------ccccccccccccc-cccccccccccccccccccc
Confidence            2 11  2 345666677777776553 2222  2222         5566777776666 55555566667777777776


Q ss_pred             eccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEec
Q 045137          202 KCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVR  261 (312)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~  261 (312)
                      +|.. .++.             ....+++|++|+++++ .++++. ....+++|+.|+++
T Consensus       165 ~n~l-~~i~-------------~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         165 DNQI-SDIV-------------PLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             SSCC-CCCG-------------GGTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEE
T ss_pred             cccc-cccc-------------cccCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEcc
Confidence            6643 2221             2245566777777665 455553 24456677777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=5.4e-14  Score=119.36  Aligned_cols=232  Identities=16%  Similarity=0.171  Sum_probs=157.7

Q ss_pred             CCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCC
Q 045137            5 SHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLK   84 (312)
Q Consensus         5 s~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~   84 (312)
                      ++..++.+|.++.  +++++|+|++| .++.+|++.|.++++|++|++++|.+..               .....+..++
T Consensus        18 ~~~~L~~lP~~l~--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~---------------i~~~~f~~l~   79 (305)
T d1xkua_          18 SDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISK---------------ISPGAFAPLV   79 (305)
T ss_dssp             TTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCC---------------BCTTTTTTCT
T ss_pred             cCCCCCccCCCCC--CCCCEEECcCC-cCCCcChhHhhccccccccccccccccc---------------cchhhhhCCC
Confidence            3446889997663  78999999999 8999998779999999999999998854               3345678899


Q ss_pred             CceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcc-eeeeecccccccc
Q 045137           85 YLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELE-ELKIDYTEIVRKR  163 (312)
Q Consensus        85 ~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~~~  163 (312)
                      +|+.+++..+....++..     ....++.|...+.... .... ..+.....+..+....+.... ......+.     
T Consensus        80 ~L~~L~l~~n~l~~l~~~-----~~~~l~~L~~~~n~l~-~l~~-~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~-----  147 (305)
T d1xkua_          80 KLERLYLSKNQLKELPEK-----MPKTLQELRVHENEIT-KVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQ-----  147 (305)
T ss_dssp             TCCEEECCSSCCSBCCSS-----CCTTCCEEECCSSCCC-BBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGG-----
T ss_pred             ccCEecccCCccCcCccc-----hhhhhhhhhccccchh-hhhh-hhhhccccccccccccccccccCCCccccc-----
Confidence            999999987765444321     1125677766654221 1111 334455566666665432211 11111121     


Q ss_pred             CCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccc
Q 045137          164 REPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELK  243 (312)
Q Consensus       164 ~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  243 (312)
                          .+++|+.+++.+| .+..++. ..+++|+.|++.++.......            .....++.+++|.++++ .+.
T Consensus       148 ----~l~~L~~l~l~~n-~l~~l~~-~~~~~L~~L~l~~n~~~~~~~------------~~~~~~~~l~~L~~s~n-~l~  208 (305)
T d1xkua_         148 ----GMKKLSYIRIADT-NITTIPQ-GLPPSLTELHLDGNKITKVDA------------ASLKGLNNLAKLGLSFN-SIS  208 (305)
T ss_dssp             ----GCTTCCEEECCSS-CCCSCCS-SCCTTCSEEECTTSCCCEECT------------GGGTTCTTCCEEECCSS-CCC
T ss_pred             ----cccccCccccccC-CccccCc-ccCCccCEEECCCCcCCCCCh------------hHhhccccccccccccc-ccc
Confidence                6788999999988 6666652 347899999998876544331            13356688999999886 566


Q ss_pred             ccccC-CcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehH
Q 045137          244 SIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEE  287 (312)
Q Consensus       244 ~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~  287 (312)
                      .+... ...+++|+.|+++++ +|+.+|...... .+++++....
T Consensus       209 ~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l-~~L~~L~Ls~  251 (305)
T d1xkua_         209 AVDNGSLANTPHLRELHLNNN-KLVKVPGGLADH-KYIQVVYLHN  251 (305)
T ss_dssp             EECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTC-SSCCEEECCS
T ss_pred             ccccccccccccceeeecccc-cccccccccccc-cCCCEEECCC
Confidence            66543 456899999999997 899998654433 6777776443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.4e-15  Score=125.01  Aligned_cols=179  Identities=21%  Similarity=0.168  Sum_probs=126.3

Q ss_pred             CcccCCCCCc--cccHHhhCCCCCcEEecCCCCCccc-cCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137            1 LLDISHTTIR--ELPEELKLLVNLKCLNLRWTGALIR-IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI   77 (312)
Q Consensus         1 ~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (312)
                      +|||+++.++  .++..+..+++|++|++++| .+.. .+. .++++++|++|++++|....             +....
T Consensus        50 ~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~-~l~~~~~L~~L~Ls~c~~it-------------d~~l~  114 (284)
T d2astb2          50 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVN-TLAKNSNLVRLNLSGCSGFS-------------EFALQ  114 (284)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHH-HHTTCTTCSEEECTTCBSCC-------------HHHHH
T ss_pred             EEECCCCccCHHHHHHHHHhCCCccccccccc-CCCcHHHH-HHhcCCCCcCcccccccccc-------------ccccc
Confidence            4788988876  35677889999999999999 5554 334 38889999999999974321             11222


Q ss_pred             hhccCCCCceEEEEEecChhhHHHHh-hcccccccceEEEEeecC-CCccccchhhhcCccccceEEeccCcCcceeeee
Q 045137           78 QELLGLKYLEVLELTLGSYHALQILL-SSNKLKSCIRSLYLYLTG-DKKSIIDATAFTDLNHLNELWIDNGIELEELKID  155 (312)
Q Consensus        78 ~~l~~L~~L~~l~l~~~~~~~~~~l~-~l~~l~~~L~~L~l~~~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~  155 (312)
                      .....+++|+.++++.+.......+. ........+++|.+.++. ...+..+......+++|++|++++|..+++..+.
T Consensus       115 ~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             hhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh
Confidence            23456889999999754321111111 111222379999998763 2344444345567899999999998777655555


Q ss_pred             ccccccccCCCCcccccceEeecCCCCccc--CCccCCCCCCceEEEeec
Q 045137          156 YTEIVRKRREPFVFHSLHLVTIYSCHKLKD--STFLAFAPNLKSLSLFKC  203 (312)
Q Consensus       156 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~  203 (312)
                      ...         .+++|++|++++|..+++  +..++.+|+|++|++.+|
T Consensus       195 ~l~---------~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFF---------QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGG---------GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhc---------ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            554         789999999999988876  346788999999999988

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=113.36  Aligned_cols=223  Identities=17%  Similarity=0.170  Sum_probs=137.9

Q ss_pred             ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137            3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG   82 (312)
Q Consensus         3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (312)
                      +.++++++.+|.++-  +++++|++++| .+..+|.++|.++++|++|++++|.+...              .....+..
T Consensus        14 ~c~~~~l~~iP~~l~--~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~--------------i~~~~f~~   76 (242)
T d1xwdc1          14 LCQESKVTEIPSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEV--------------IEADVFSN   76 (242)
T ss_dssp             EEESCSCSSCCSCSC--SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCE--------------ECSSSEES
T ss_pred             EEeCCCCCCcCCCCC--CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccce--------------eecccccc
Confidence            446677888986553  68999999999 89999988799999999999999977531              22344566


Q ss_pred             CCCceEEEEEec-Chhh--HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137           83 LKYLEVLELTLG-SYHA--LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI  159 (312)
Q Consensus        83 L~~L~~l~l~~~-~~~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  159 (312)
                      +.+++.+.+... ....  ...+..++    +|+.+.+.++... .......+..+..+..+... +..+..+....+..
T Consensus        77 l~~l~~l~~~~~n~l~~~~~~~~~~l~----~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~-n~~l~~i~~~~~~~  150 (242)
T d1xwdc1          77 LPKLHEIRIEKANNLLYINPEAFQNLP----NLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD-NINIHTIERNSFVG  150 (242)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSEECCT----TCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEES-CTTCCEECTTSSTT
T ss_pred             ccccccccccccccccccccccccccc----cccccccchhhhc-cccccccccccccccccccc-cccccccccccccc
Confidence            777777776532 2211  12234445    7889999876432 22111222333333333333 22444443332220


Q ss_pred             ccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccc
Q 045137          160 VRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY  238 (312)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (312)
                              ....++.|++.++ .+..++ .....++++.+...++..++.+..           .....+++|++|++++
T Consensus       151 --------~~~~l~~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~-----------~~f~~l~~L~~L~Ls~  210 (242)
T d1xwdc1         151 --------LSFESVILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLEELPN-----------DVFHGASGPVILDISR  210 (242)
T ss_dssp             --------SBSSCEEEECCSS-CCCEECTTTTTTCCEEEEECTTCTTCCCCCT-----------TTTTTSCCCSEEECTT
T ss_pred             --------ccccceeeecccc-cccccccccccchhhhccccccccccccccH-----------HHhcCCCCCCEEECCC
Confidence                    2347788888877 677765 344566776666555544554421           1235679999999988


Q ss_pred             cccccccccCCcCCCCccEEEecCCCCCCCCCC
Q 045137          239 LPELKSIFWKPLPFTHLKEMGVRACDQLRKLPL  271 (312)
Q Consensus       239 ~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  271 (312)
                      + .++.++.  ..+.+|..|+.-++.+++.+|.
T Consensus       211 N-~l~~l~~--~~~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         211 T-RIHSLPS--YGLENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             S-CCCCCCS--SSCTTCCEEESSSEESSSCSCC
T ss_pred             C-cCCccCH--HHHcCCcccccCcCCCCCcCCC
Confidence            5 4776643  4577777777666677887775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.5e-13  Score=110.28  Aligned_cols=173  Identities=14%  Similarity=0.185  Sum_probs=93.0

Q ss_pred             CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc-cccccccCCCCccccCCccchhh
Q 045137            1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT-GGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|+|++|.|+.+| ..|.++++|++|++++|.....++.+.+.++++++++.+..+ .+..               ....
T Consensus        33 ~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~---------------~~~~   97 (242)
T d1xwdc1          33 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY---------------INPE   97 (242)
T ss_dssp             EEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE---------------ECTT
T ss_pred             EEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc---------------cccc
Confidence            3677777777776 356777777777777774334456655677777777776543 3322               3334


Q ss_pred             hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecC--CCccccchhhhcCcc-ccceEEeccCcCcceeeee
Q 045137           79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTG--DKKSIIDATAFTDLN-HLNELWIDNGIELEELKID  155 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~--~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~  155 (312)
                      .+..+++|+.+++..+.....+......    .++.+......  ....... ..+..++ .++.|++.++ .++.+...
T Consensus        98 ~~~~l~~L~~l~l~~~~l~~~~~~~~~~----~l~~l~~~~~~n~~l~~i~~-~~~~~~~~~l~~L~l~~n-~l~~i~~~  171 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTGIKHLPDVHKIH----SLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKN-GIQEIHNC  171 (242)
T ss_dssp             SEECCTTCCEEEEESCCCCSCCCCTTTC----BSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSS-CCCEECTT
T ss_pred             cccccccccccccchhhhcccccccccc----cccccccccccccccccccc-cccccccccceeeecccc-cccccccc
Confidence            5666777777777655443333222222    33333322221  1111111 2233332 5666666543 45544433


Q ss_pred             ccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeecc
Q 045137          156 YTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCR  204 (312)
Q Consensus       156 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~  204 (312)
                      .+          ...+++.+....+..++.+|  .+.++++|++|+++++.
T Consensus       172 ~~----------~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         172 AF----------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             TT----------TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             cc----------cchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            33          34555555443333666665  35667777777777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.39  E-value=3.6e-12  Score=109.47  Aligned_cols=52  Identities=21%  Similarity=0.246  Sum_probs=41.6

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF   60 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~   60 (312)
                      +|||+++.++.+|+   .+++|++|++++| .++.+|..    +.+|+.|++.+|.+..+
T Consensus        42 ~LdLs~~~L~~lp~---~~~~L~~L~Ls~N-~l~~lp~~----~~~L~~L~l~~n~l~~l   93 (353)
T d1jl5a_          42 ELELNNLGLSSLPE---LPPHLESLVASCN-SLTELPEL----PQSLKSLLVDNNNLKAL   93 (353)
T ss_dssp             EEECTTSCCSCCCS---CCTTCSEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSCC
T ss_pred             EEEeCCCCCCCCCC---CCCCCCEEECCCC-CCcccccc----hhhhhhhhhhhcccchh
Confidence            37899999999995   3678999999999 88888864    35788888888877543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=9.1e-13  Score=96.26  Aligned_cols=76  Identities=21%  Similarity=0.266  Sum_probs=63.9

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|+|++|+++.+| .++.+++|++|++++| .++.+|++ ++.+++|++|++++|.+..                 +..+
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N-~l~~lp~~-~~~l~~L~~L~l~~N~i~~-----------------l~~~   61 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHN-RLRALPPA-LAALRCLEVLQASDNALEN-----------------VDGV   61 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSSCCCC-----------------CGGG
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCC-ccCcchhh-hhhhhcccccccccccccc-----------------cCcc
Confidence            4899999999997 5999999999999999 89999986 8999999999999998853                 2346


Q ss_pred             cCCCCceEEEEEecCh
Q 045137           81 LGLKYLEVLELTLGSY   96 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~   96 (312)
                      ..+++|+.++++.+..
T Consensus        62 ~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3          62 ANLPRLQELLLCNNRL   77 (124)
T ss_dssp             TTCSSCCEEECCSSCC
T ss_pred             ccccccCeEECCCCcc
Confidence            6777777777765544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.24  E-value=1.6e-11  Score=105.25  Aligned_cols=61  Identities=23%  Similarity=0.238  Sum_probs=46.3

Q ss_pred             CCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCC
Q 045137          191 FAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLP  270 (312)
Q Consensus       191 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~  270 (312)
                      .+++|++|++++|.. ..+ +              ..+++|++|+++++ .++.++.   .+++|+.|++++|+ |+.+|
T Consensus       282 ~~~~L~~L~Ls~N~l-~~l-p--------------~~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp  340 (353)
T d1jl5a_         282 LPPSLEELNVSNNKL-IEL-P--------------ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFP  340 (353)
T ss_dssp             CCTTCCEEECCSSCC-SCC-C--------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCC
T ss_pred             cCCCCCEEECCCCcc-Ccc-c--------------cccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCC
Confidence            468999999998853 332 1              24689999999886 5776642   46789999999985 99998


Q ss_pred             CC
Q 045137          271 LD  272 (312)
Q Consensus       271 ~~  272 (312)
                      ..
T Consensus       341 ~~  342 (353)
T d1jl5a_         341 DI  342 (353)
T ss_dssp             CC
T ss_pred             cc
Confidence            63

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.5e-12  Score=97.00  Aligned_cols=128  Identities=13%  Similarity=-0.008  Sum_probs=77.3

Q ss_pred             hhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137           16 LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS   95 (312)
Q Consensus        16 i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~   95 (312)
                      +.+..+|+.|+|++| .++.++. .+..+++|++|++++|.+..                 +..+..+++|+.|+++.+.
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~-~~~~l~~L~~L~Ls~N~i~~-----------------l~~~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRK-----------------LDGFPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCE-----------------ECCCCCCSSCCEEECCSSC
T ss_pred             ccCcCcCcEEECCCC-CCCccCc-cccccccCCEEECCCCCCCc-----------------cCCcccCcchhhhhccccc
Confidence            456667777777777 6777764 25667777777777776642                 2345666777777777665


Q ss_pred             hhhHHH--HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee---eccccccccCCCCccc
Q 045137           96 YHALQI--LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI---DYTEIVRKRREPFVFH  170 (312)
Q Consensus        96 ~~~~~~--l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~~~~~~~~~~~~~  170 (312)
                      ...++.  +..++    +++.|++.++.-.....+ ..+..+++|++|+++++. +...+.   ..+.         .+|
T Consensus        75 i~~l~~~~~~~l~----~L~~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~---------~lp  139 (162)
T d1a9na_          75 ICRIGEGLDQALP----DLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNP-VTNKKHYRLYVIY---------KVP  139 (162)
T ss_dssp             CCEECSCHHHHCT----TCCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHH---------HCT
T ss_pred             ccCCCcccccccc----ccccceeccccccccccc-cccccccccchhhcCCCc-cccccchHHHHHH---------HCC
Confidence            543321  23455    677777776543222222 456777888888888763 332221   1122         677


Q ss_pred             ccceEee
Q 045137          171 SLHLVTI  177 (312)
Q Consensus       171 ~L~~L~l  177 (312)
                      +|+.|+-
T Consensus       140 ~L~~LD~  146 (162)
T d1a9na_         140 QVRVLDF  146 (162)
T ss_dssp             TCSEETT
T ss_pred             CcCeeCC
Confidence            8888763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=1.8e-12  Score=102.73  Aligned_cols=115  Identities=18%  Similarity=0.137  Sum_probs=73.6

Q ss_pred             CCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCce
Q 045137            8 TIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLE   87 (312)
Q Consensus         8 ~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~   87 (312)
                      .+..+|.+++.|++|++|+|++| .+..++.  +..+++|++|++++|.+..++             .   ....+.+|+
T Consensus        36 ~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~-------------~---~~~~~~~L~   96 (198)
T d1m9la_          36 PIEKMDATLSTLKACKHLALSTN-NIEKISS--LSGMENLRILSLGRNLIKKIE-------------N---LDAVADTLE   96 (198)
T ss_dssp             TCCCCHHHHHHTTTCCEEECSEE-EESCCCC--HHHHTTCCEEECCEEEECSCS-------------S---HHHHHHHCC
T ss_pred             chhhhhhHHhcccccceeECccc-CCCCccc--ccCCccccChhhccccccccc-------------c---ccccccccc
Confidence            57788889999999999999999 8888874  899999999999999875321             1   111123456


Q ss_pred             EEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137           88 VLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        88 ~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  146 (312)
                      .++++.+....++.+..++    +|+.|+++++.-. .......+..+++|++|+++++
T Consensus        97 ~L~l~~N~i~~l~~~~~l~----~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          97 ELWISYNQIASLSGIEKLV----NLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEECSEEECCCHHHHHHHH----HSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccccccccccccc----cccccccccchhc-cccccccccCCCccceeecCCC
Confidence            6666655554555555555    5666666654221 1111134455555555655543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.2e-11  Score=94.58  Aligned_cols=121  Identities=15%  Similarity=0.031  Sum_probs=74.3

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      |+|++|.|+.+|..+..+++|++|++++| .+..++.  +..+++|++|++++|.+..++               .....
T Consensus        23 L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~--~~~l~~L~~L~ls~N~i~~l~---------------~~~~~   84 (162)
T d1a9na_          23 LDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDG--FPLLRRLKTLLVNNNRICRIG---------------EGLDQ   84 (162)
T ss_dssp             EECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECC--CCCCSSCCEEECCSSCCCEEC---------------SCHHH
T ss_pred             EECCCCCCCccCccccccccCCEEECCCC-CCCccCC--cccCcchhhhhcccccccCCC---------------ccccc
Confidence            67777777777766667777888888877 6777754  777777888888777775422               12234


Q ss_pred             CCCCceEEEEEecChhhHHH---HhhcccccccceEEEEeecCCCccccc-hhhhcCccccceEEec
Q 045137           82 GLKYLEVLELTLGSYHALQI---LLSSNKLKSCIRSLYLYLTGDKKSIID-ATAFTDLNHLNELWID  144 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~~~~~---l~~l~~l~~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~  144 (312)
                      .+++|+.++++.+....++.   +..++    +|+.+++.++.-...... ...+..+++|++|+-.
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~----~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLK----SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCT----TCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccccceecccccccccccccccccc----ccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            56677777777665443333   33334    677777776532111110 1245566777766643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=3e-10  Score=89.15  Aligned_cols=55  Identities=20%  Similarity=0.253  Sum_probs=37.5

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccc-cCchhhhccccccEEEEecccccc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIR-IPRGLISKFSRLRVLRMLGTGGFI   59 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~~i~~l~~L~~L~l~~~~~~~   59 (312)
                      ++.++++++.+|.++-  .++++|+|++| .+.. ++...+.++++|++|++++|.+..
T Consensus        13 v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~   68 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTG   68 (192)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred             EEEeCCCcCccCCCCC--CCCCEEEeCCC-CCcccccccccCCCceEeeeecccccccc
Confidence            3566777777776553  57778888887 5643 555556777888888887776643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=1.8e-10  Score=83.77  Aligned_cols=59  Identities=17%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             cEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHH
Q 045137           23 KCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ  100 (312)
Q Consensus        23 ~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~  100 (312)
                      |+|+|++| .++.++.  ++.+++|++|++++|.+..+                +..+..+++|+.++++.+....++
T Consensus         1 R~L~Ls~n-~l~~l~~--l~~l~~L~~L~ls~N~l~~l----------------p~~~~~l~~L~~L~l~~N~i~~l~   59 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRAL----------------PPALAALRCLEVLQASDNALENVD   59 (124)
T ss_dssp             SEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCC----------------CGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             CEEEcCCC-CCCCCcc--cccCCCCCEEECCCCccCcc----------------hhhhhhhhcccccccccccccccC
Confidence            68999999 8998875  89999999999999988643                234667777888877765543333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.87  E-value=3e-11  Score=95.53  Aligned_cols=96  Identities=19%  Similarity=0.125  Sum_probs=77.9

Q ss_pred             CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137            1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL   80 (312)
Q Consensus         1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (312)
                      +|+|++|.|+.++ +++.+++|++|++++| .++.+|.- +..+++|++|++.+|.+..                 +..+
T Consensus        52 ~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~-~~~~~~L~~L~l~~N~i~~-----------------l~~~  111 (198)
T d1m9la_          52 HLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISYNQIAS-----------------LSGI  111 (198)
T ss_dssp             EEECSEEEESCCC-CHHHHTTCCEEECCEE-EECSCSSH-HHHHHHCCEEECSEEECCC-----------------HHHH
T ss_pred             eeECcccCCCCcc-cccCCccccChhhccc-cccccccc-ccccccccccccccccccc-----------------cccc
Confidence            3789999999996 6999999999999999 89999863 6677899999999998742                 3456


Q ss_pred             cCCCCceEEEEEecChhhHH---HHhhcccccccceEEEEeec
Q 045137           81 LGLKYLEVLELTLGSYHALQ---ILLSSNKLKSCIRSLYLYLT  120 (312)
Q Consensus        81 ~~L~~L~~l~l~~~~~~~~~---~l~~l~~l~~~L~~L~l~~~  120 (312)
                      ..+++|+.++++.+....+.   .+..++    +|+.|++.++
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~----~L~~L~L~~N  150 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALD----KLEDLLLAGN  150 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTT----TCSEEEECSS
T ss_pred             cccccccccccccchhccccccccccCCC----ccceeecCCC
Confidence            77788999999877655444   455666    8999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.77  E-value=1.1e-09  Score=85.81  Aligned_cols=80  Identities=19%  Similarity=0.123  Sum_probs=65.4

Q ss_pred             CcccCCCCCcc-cc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137            1 LLDISHTTIRE-LP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ   78 (312)
Q Consensus         1 ~L~Ls~~~i~~-lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (312)
                      +|+|++|.|+. ++ ..|+.+++|++|+|++| .+..++.+.+..+++|++|++++|.+..++               ..
T Consensus        33 ~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~---------------~~   96 (192)
T d1w8aa_          33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEIS---------------NK   96 (192)
T ss_dssp             EEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEEC---------------SS
T ss_pred             EEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeeccccccccC---------------HH
Confidence            47999999975 54 77899999999999999 888888877999999999999999987543               33


Q ss_pred             hccCCCCceEEEEEecCh
Q 045137           79 ELLGLKYLEVLELTLGSY   96 (312)
Q Consensus        79 ~l~~L~~L~~l~l~~~~~   96 (312)
                      .+..+++|+.|+++.+..
T Consensus        97 ~F~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             SSTTCTTCCEEECCSSCC
T ss_pred             HHhCCCcccccccCCccc
Confidence            466677788887776544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.3e-08  Score=76.70  Aligned_cols=81  Identities=17%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137            2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL   81 (312)
Q Consensus         2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (312)
                      ++.+++.+.+.|..+..+++|+.|+++++..+..++..+|.++++|+.|++++|.+..               .....+.
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~---------------i~~~~f~   77 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF---------------VAPDAFH   77 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE---------------ECTTGGG
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC---------------ccccccc
Confidence            4567778888898899999999999987757999988889999999999999998865               3345567


Q ss_pred             CCCCceEEEEEecChh
Q 045137           82 GLKYLEVLELTLGSYH   97 (312)
Q Consensus        82 ~L~~L~~l~l~~~~~~   97 (312)
                      .+++|+.++++.+...
T Consensus        78 ~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          78 FTPRLSRLNLSFNALE   93 (156)
T ss_dssp             SCSCCCEEECCSSCCS
T ss_pred             ccccccceeccCCCCc
Confidence            7778888888766543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=9.8e-08  Score=71.76  Aligned_cols=78  Identities=19%  Similarity=0.125  Sum_probs=62.2

Q ss_pred             cccCCC-CCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137            2 LDISHT-TIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE   79 (312)
Q Consensus         2 L~Ls~~-~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |+++++ .++.++ ..|..+++|+.|+|++| .+..+++++|..+++|++|++++|.+..++.+               .
T Consensus        36 L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~---------------~   99 (156)
T d2ifga3          36 LYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWK---------------T   99 (156)
T ss_dssp             EECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCST---------------T
T ss_pred             eecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCCCCcccChh---------------h
Confidence            567666 599997 67999999999999999 89999888899999999999999999765421               1


Q ss_pred             ccCCCCceEEEEEecCh
Q 045137           80 LLGLKYLEVLELTLGSY   96 (312)
Q Consensus        80 l~~L~~L~~l~l~~~~~   96 (312)
                      +.. ..|+.+++..+.+
T Consensus       100 ~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3         100 VQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             TCS-CCCCEEECCSSCC
T ss_pred             hcc-ccccccccCCCcc
Confidence            222 2577888876644

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.40  E-value=4.4e-08  Score=83.58  Aligned_cols=231  Identities=17%  Similarity=0.091  Sum_probs=106.6

Q ss_pred             cccCCCCCcc-----ccHHhhCCCCCcEEecCCCCCcccc----Cc------hhhhccccccEEEEecccccccccCCCC
Q 045137            2 LDISHTTIRE-----LPEELKLLVNLKCLNLRWTGALIRI----PR------GLISKFSRLRVLRMLGTGGFIFYEAPED   66 (312)
Q Consensus         2 L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~~l----p~------~~i~~l~~L~~L~l~~~~~~~~~~~~~~   66 (312)
                      |+|++|.|..     +...+...++|+.|+++++ .....    +.      ..+..+++|++|++++|.+....     
T Consensus        36 L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-----  109 (344)
T d2ca6a1          36 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA-----  109 (344)
T ss_dssp             EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT-----
T ss_pred             EECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCC-cccccccccchHHHHHHHHHhhCCCccccccccccccccc-----
Confidence            4566665532     2333455667777776655 22211    11      11344566777777666553210     


Q ss_pred             ccccCCccchhhhccCCCCceEEEEEecChhhH------HHHhh-----cccccccceEEEEeecCCCc--cccchhhhc
Q 045137           67 SVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL------QILLS-----SNKLKSCIRSLYLYLTGDKK--SIIDATAFT  133 (312)
Q Consensus        67 ~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~------~~l~~-----l~~l~~~L~~L~l~~~~~~~--~~~~~~~l~  133 (312)
                            .......+...++|+.++++.+.....      ..+..     .......++.+.+.+.....  ...+...+.
T Consensus       110 ------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         110 ------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             ------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ------ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence                  112223444556677777664432110      00000     00011145566555432111  112223445


Q ss_pred             CccccceEEeccCcCcceeee-----eccccccccCCCCcccccceEeecCCCCccc-----C-CccCCCCCCceEEEee
Q 045137          134 DLNHLNELWIDNGIELEELKI-----DYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-----S-TFLAFAPNLKSLSLFK  202 (312)
Q Consensus       134 ~l~~L~~L~l~~~~~l~~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l-~~l~~l~~L~~L~l~~  202 (312)
                      ..+.|++|+++.+ .+...+.     ....         .+++|+.|++++| .+.+     + ..+..+++|++|++++
T Consensus       184 ~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~---------~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         184 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLA---------YCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHHHHTTGG---------GCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             hhhhhcccccccc-cccccccccchhhhhc---------chhhhcccccccc-cccccccccccccccccccchhhhhhc
Confidence            5567777777665 2322111     1111         5677777777776 4433     1 1455677777777777


Q ss_pred             ccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccC-----C-cCCCCccEEEecC
Q 045137          203 CRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWK-----P-LPFTHLKEMGVRA  262 (312)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~-~~~~~L~~L~i~~  262 (312)
                      |......... ....     ......+.|++|+++++. ++.-...     . ...+.|+.|++++
T Consensus       253 n~i~~~g~~~-l~~~-----l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         253 CLLSARGAAA-VVDA-----FSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             CCCCHHHHHH-HHHH-----HHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             CccCchhhHH-HHHH-----hhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCC
Confidence            7532221000 0000     001123567777777753 4331111     1 1356677777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.07  E-value=5.6e-07  Score=76.52  Aligned_cols=199  Identities=13%  Similarity=0.061  Sum_probs=114.6

Q ss_pred             HHhhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceE
Q 045137           14 EELKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEV   88 (312)
Q Consensus        14 ~~i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~   88 (312)
                      ..+...++|+.|+|++| .+..     +.. .+..+++|++|++++|.+.......  ....-..............|+.
T Consensus        87 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~--l~~~l~~~~~~~~~~~~~~L~~  162 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDN-AFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAK--IARALQELAVNKKAKNAPPLRS  162 (344)
T ss_dssp             HHHTTCTTCCEEECCSC-CCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHH--HHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHhhCCCccccccccc-ccccccccchhh-hhcccccchheeccccccccccccc--ccccccccccccccccCcccce
Confidence            44567899999999999 5554     222 2567899999999998764211000  0000000000111234567788


Q ss_pred             EEEEecChh--hHH----HHhhcccccccceEEEEeecCCCccc---cchhhhcCccccceEEeccCcCcceeee----e
Q 045137           89 LELTLGSYH--ALQ----ILLSSNKLKSCIRSLYLYLTGDKKSI---IDATAFTDLNHLNELWIDNGIELEELKI----D  155 (312)
Q Consensus        89 l~l~~~~~~--~~~----~l~~l~~l~~~L~~L~l~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~l~~l~~----~  155 (312)
                      +.++.+...  ...    .+....    .++.+++..+......   .....+...++|+.|+++++ .+...+.    .
T Consensus       163 l~l~~n~i~~~~~~~l~~~l~~~~----~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~  237 (344)
T d2ca6a1         163 IICGRNRLENGSMKEWAKTFQSHR----LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAI  237 (344)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCT----TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHH
T ss_pred             eecccccccccccccccchhhhhh----hhcccccccccccccccccchhhhhcchhhhcccccccc-cccccccccccc
Confidence            877655331  122    233344    7899999876432211   12245677889999999876 3433221    1


Q ss_pred             ccccccccCCCCcccccceEeecCCCCcccC--C----ccC--CCCCCceEEEeeccccceecccCccccCCCCCCCC-c
Q 045137          156 YTEIVRKRREPFVFHSLHLVTIYSCHKLKDS--T----FLA--FAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHI-S  226 (312)
Q Consensus       156 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~----~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~  226 (312)
                      ...         .+++|++|++++| .+.+.  .    .+.  ..+.|++|++++|..-.+...        .+.... .
T Consensus       238 ~l~---------~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~--------~l~~~l~~  299 (344)
T d2ca6a1         238 ALK---------SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR--------TLKTVIDE  299 (344)
T ss_dssp             HGG---------GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--------HHHHHHHH
T ss_pred             ccc---------ccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHH--------HHHHHHHc
Confidence            222         6789999999999 66552  1    122  357899999998863222110        000111 2


Q ss_pred             cCCCcCeeecccc
Q 045137          227 PFENLKSLDLSYL  239 (312)
Q Consensus       227 ~~~~L~~L~l~~~  239 (312)
                      .++.|++|+++++
T Consensus       300 ~~~~L~~L~l~~N  312 (344)
T d2ca6a1         300 KMPDLLFLELNGN  312 (344)
T ss_dssp             HCTTCCEEECTTS
T ss_pred             cCCCCCEEECCCC
Confidence            4678999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=9.2e-06  Score=60.97  Aligned_cols=45  Identities=22%  Similarity=0.234  Sum_probs=32.9

Q ss_pred             HHhhCCCCCcEEecCCCCCccccCc--hhhhccccccEEEEecccccc
Q 045137           14 EELKLLVNLKCLNLRWTGALIRIPR--GLISKFSRLRVLRMLGTGGFI   59 (312)
Q Consensus        14 ~~i~~L~~L~~L~L~~~~~~~~lp~--~~i~~l~~L~~L~l~~~~~~~   59 (312)
                      ..+..+++|++|+|++| .+..++.  +.+..+++|+.|++++|.+..
T Consensus        59 ~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          59 IIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKS  105 (162)
T ss_dssp             HHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred             HHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCcccc
Confidence            33457888888888888 7776643  336778888888888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0001  Score=63.85  Aligned_cols=56  Identities=21%  Similarity=0.163  Sum_probs=40.4

Q ss_pred             CcccCCCCCccc--cHHhhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEeccccc
Q 045137            1 LLDISHTTIREL--PEELKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGF   58 (312)
Q Consensus         1 ~L~Ls~~~i~~l--p~~i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~   58 (312)
                      +||+++++|+..  .+-+..+++|++|+|++| .++.     +.. ++..+++|++|++++|.+.
T Consensus         6 ~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           6 SLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISS-ALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHH-HHHTCTTCCEEECTTCCCH
T ss_pred             EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHH-HHhcCCCCCEEECcCCcCC
Confidence            368888888753  355677888888888888 5553     222 3577888888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00027  Score=61.10  Aligned_cols=113  Identities=16%  Similarity=0.147  Sum_probs=75.6

Q ss_pred             CCcEEecCCCCCccccC-chhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhh-
Q 045137           21 NLKCLNLRWTGALIRIP-RGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA-   98 (312)
Q Consensus        21 ~L~~L~L~~~~~~~~lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~-   98 (312)
                      +|+.||++++ .+.... ...+..+++++.|++.+|.+..-.           .......+..+++|+.|+++.+.... 
T Consensus         3 ~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~-----------~~~l~~~L~~~~~L~~LdLs~N~i~~~   70 (460)
T d1z7xw1           3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEAR-----------CKDISSALRVNPALAELNLRSNELGDV   70 (460)
T ss_dssp             EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHH-----------HHHHHHHHHTCTTCCEEECTTCCCHHH
T ss_pred             CCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCCCCHHH-----------HHHHHHHHhcCCCCCEEECcCCcCChH
Confidence            6899999999 776532 234688999999999999875311           11223456788999999998776532 


Q ss_pred             -HHHHhh-cccccccceEEEEeecCCCccc---cchhhhcCccccceEEeccC
Q 045137           99 -LQILLS-SNKLKSCIRSLYLYLTGDKKSI---IDATAFTDLNHLNELWIDNG  146 (312)
Q Consensus        99 -~~~l~~-l~~l~~~L~~L~l~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~  146 (312)
                       ++.+.. +......|++|++.++.- +..   .+...+...++|++|+++++
T Consensus        71 ~~~~l~~~l~~~~~~L~~L~L~~n~i-t~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          71 GVHCVLQGLQTPSCKIQKLSLQNCCL-TGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHHHHTTCSTTCCCCEEECTTSCC-BGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCCCEEECCCCCc-cccccccccchhhccccccccccccc
Confidence             223322 111112699999998753 322   23356778889999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=3.2e-05  Score=57.83  Aligned_cols=89  Identities=16%  Similarity=0.062  Sum_probs=55.1

Q ss_pred             hhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137           16 LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS   95 (312)
Q Consensus        16 i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~   95 (312)
                      +..+..+..++...+ ....+ ..+...+++|++|++++|.+..++             .....+..+++|+.|+++.+.
T Consensus        38 l~~~~~~~~l~~~~~-~~~~l-~~~~~~~~~L~~L~Ls~N~i~~l~-------------~~~~~~~~l~~L~~L~Ls~N~  102 (162)
T d1koha1          38 LVAQNIDVVLNRRSS-MAATL-RIIEENIPELLSLNLSNNRLYRLD-------------DMSSIVQKAPNLKILNLSGNE  102 (162)
T ss_dssp             TTTTTCCCCTTSHHH-HHHHH-HHHHHHCTTCCCCCCCSSCCCCCS-------------GGGTHHHHSTTCCCCCCTTSC
T ss_pred             hhhccchhhcchhhh-Hhhhh-HHHHHhCCCCCEeeCCCccccCCc-------------hhHHHHhhCCcccccccccCc
Confidence            344444555544444 33333 334577899999999999886421             223456678888889998887


Q ss_pred             hhhHHHHhhcccccccceEEEEeecC
Q 045137           96 YHALQILLSSNKLKSCIRSLYLYLTG  121 (312)
Q Consensus        96 ~~~~~~l~~l~~l~~~L~~L~l~~~~  121 (312)
                      ...++.+..+...  .++.+++.+..
T Consensus       103 i~~l~~l~~l~~~--~L~~L~L~~Np  126 (162)
T d1koha1         103 LKSERELDKIKGL--KLEELWLDGNS  126 (162)
T ss_dssp             CCCGGGHHHHTTC--CCSSCCCTTST
T ss_pred             cccchhhhhhhcc--ccceeecCCCC
Confidence            7666654444322  56777777653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.31  E-value=0.0058  Score=45.22  Aligned_cols=67  Identities=13%  Similarity=0.011  Sum_probs=38.2

Q ss_pred             CCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEE
Q 045137           18 LLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELT   92 (312)
Q Consensus        18 ~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~   92 (312)
                      +.++|+.|+|+++..+..     +-. ++...++|++|++++|.+..-.           .......+...+.|+.++++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~-~L~~n~~L~~L~Ls~n~l~~~~-----------~~~la~~L~~n~~L~~L~L~   80 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSE-----------ARGLIELIETSPSLRVLNVE   80 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHH-----------HTTHHHHHHHCSSCCEEECC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHH-HHhhCCccceeeccccccchhH-----------HHHHhhhhhhcccccceeee
Confidence            457888888887533432     111 2556677888888888764311           01222334445667777766


Q ss_pred             ecCh
Q 045137           93 LGSY   96 (312)
Q Consensus        93 ~~~~   96 (312)
                      .+..
T Consensus        81 ~n~i   84 (167)
T d1pgva_          81 SNFL   84 (167)
T ss_dssp             SSBC
T ss_pred             hhhc
Confidence            5543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.87  E-value=0.013  Score=43.26  Aligned_cols=81  Identities=17%  Similarity=0.055  Sum_probs=53.8

Q ss_pred             cccCCC-CCcc-----ccHHhhCCCCCcEEecCCCCCcccc--C--chhhhccccccEEEEecccccccccCCCCccccC
Q 045137            2 LDISHT-TIRE-----LPEELKLLVNLKCLNLRWTGALIRI--P--RGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFG   71 (312)
Q Consensus         2 L~Ls~~-~i~~-----lp~~i~~L~~L~~L~L~~~~~~~~l--p--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   71 (312)
                      |+|+++ .++.     +-..+...++|++|+|++| .+..-  .  ..++...+.|++|++++|.+..-+          
T Consensus        20 L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g----------   88 (167)
T d1pgva_          20 VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPEL----------   88 (167)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH----------
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHH----------
Confidence            678764 4642     3355777899999999999 66531  1  123566789999999999885321          


Q ss_pred             CccchhhhccCCCCceEEEEEec
Q 045137           72 GGEVLIQELLGLKYLEVLELTLG   94 (312)
Q Consensus        72 ~~~~~~~~l~~L~~L~~l~l~~~   94 (312)
                       .......+..-+.|+.|+++.+
T Consensus        89 -~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          89 -LARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             -HHHHHHHTTTTCCCSEEECCCC
T ss_pred             -HHHHHHHHHhCCcCCEEECCCC
Confidence             1133445666677888887644

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.72  E-value=0.034  Score=40.67  Aligned_cols=69  Identities=13%  Similarity=-0.000  Sum_probs=41.5

Q ss_pred             HHhhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceE
Q 045137           14 EELKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEV   88 (312)
Q Consensus        14 ~~i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~   88 (312)
                      ....+.++|++|+++++..+..     +-. ++...++|++|++++|.+..-.           .......+.....++.
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~-al~~n~~L~~L~Ls~n~l~~~~-----------~~~L~~~l~~~~~l~~   78 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPV-----------AFALAEMLKVNNTLKS   78 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHH-----------HHHHHHHHHHCSSCCE
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHH-HHhcCCccCeeeccCCcccHHH-----------HHHHHHHHhhcccchh
Confidence            3345678999999987534432     112 2457788999999988774311           1122234455566777


Q ss_pred             EEEEec
Q 045137           89 LELTLG   94 (312)
Q Consensus        89 l~l~~~   94 (312)
                      +++..+
T Consensus        79 l~l~~~   84 (166)
T d1io0a_          79 LNVESN   84 (166)
T ss_dssp             EECCSS
T ss_pred             hhhccc
Confidence            766644

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.66  E-value=0.044  Score=40.03  Aligned_cols=78  Identities=15%  Similarity=0.052  Sum_probs=50.8

Q ss_pred             cccCC-CCCc-----cccHHhhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCCCCcccc
Q 045137            2 LDISH-TTIR-----ELPEELKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLF   70 (312)
Q Consensus         2 L~Ls~-~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   70 (312)
                      |+|++ +.++     .+-..+...++|+.|++++| .+..     +-. ++...+.++.+++.+|.+..-+         
T Consensus        22 L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~-~l~~~~~l~~l~l~~~~~~~~g---------   90 (166)
T d1io0a_          22 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSG---------   90 (166)
T ss_dssp             EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHH---------
T ss_pred             EEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHH-HHhhcccchhhhhccccccchh---------
Confidence            56776 3453     24455678899999999999 6553     222 3567789999999998775311         


Q ss_pred             CCccchhhhccCCCCceEEEEE
Q 045137           71 GGGEVLIQELLGLKYLEVLELT   92 (312)
Q Consensus        71 ~~~~~~~~~l~~L~~L~~l~l~   92 (312)
                        .......+...+.|+.+++.
T Consensus        91 --~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          91 --ILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             --HHHHHHGGGGCSSCCEEECC
T ss_pred             --HHHHHHHHHhCccccEEeec
Confidence              11333455666667766554