Citrus Sinensis ID: 045147

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
SYGASDQPESASASQIVFTSTMSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERSWKKSSSSSARKSESNNSTPSKTVRTGTVAVA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEccccccHHHcccccccccHHHHHHHHHHHccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
sygasdqpesasasqIVFTSTMSYYyagcadyqephfldscflcrkplgynsdifmyrgntpfcskeCRQEQIEMDEakerswkksssssarksesnnstpsktvrtgtvava
Flexible Loop (DISEMBL)
sygasdqpesasasQIVFTSTMSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEmdeakerswkksssssarksesnnstpsktvrtgtvava
Low Complexity Region (SEG)
SYGASDQPESASASQIVFTSTMSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEakerswkksssssarksesnnsTPSKTVRTGTVAVA
Disordered region (IsUnstruct)
***************IVFTSTMSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSK***********************************************
Disordered Region (DISOPRED)
**********************************PHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEM*********************************TVAVA
Disordered Region (DISEMBL)
**************QIVFTSTMSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQI****************************************
Disordered Region (DISPRO)
*******************STMSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERS*******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SYGASDQPESASASQIVFTSTMSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERSWKKSSSSSARKSESNNSTPSKTVRTGTVAVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
351721079	115	uncharacterized protein LOC100499981 [Gl	0.796	0.782	0.771	7e-35
351726528	115	uncharacterized protein LOC100306220 [Gl	0.796	0.782	0.739	2e-33
388505940	115	unknown [Lotus japonicus]	0.796	0.782	0.731	6e-31
357512955	115	hypothetical protein MTR_8g008840 [Medic	0.796	0.782	0.663	7e-29
449432358	104	PREDICTED: uncharacterized protein LOC10	0.787	0.855	0.660	3e-28
224067568	94	predicted protein [Populus trichocarpa]	0.787	0.946	0.717	6e-27
449442317	96	PREDICTED: uncharacterized protein LOC10	0.787	0.927	0.655	2e-26
225453293	101	PREDICTED: uncharacterized protein LOC10	0.761	0.851	0.7	6e-26
224136362	94	predicted protein [Populus trichocarpa]	0.787	0.946	0.684	7e-26
18406598	93	uncharacterized protein [Arabidopsis tha	0.814	0.989	0.634	7e-26

>gi|351721079|ref|NP_001235150.1| uncharacterized protein LOC100499981 [Glycine max] gi|255628261|gb|ACU14475.1| unknown [Glycine max]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%), Gaps = 2/92 (2%)

Query: 24  YYYAGCAD-YQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERS 82
           +YYAG  D Y+EPHFL +CFLCRKPLG N DIFMYRGNTPFCSKECRQEQIE+DEAKE+S
Sbjct: 24  FYYAGSEDHYEEPHFLQACFLCRKPLGQNRDIFMYRGNTPFCSKECRQEQIEIDEAKEKS 83

Query: 83  WKKSSSSSARKSESN-NSTPSKTVRTGTVAVA 113
           WK SS    R+SE+N NSTP+K VRTGTVAVA
Sbjct: 84  WKLSSKRGVRQSETNQNSTPNKAVRTGTVAVA 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726528|ref|NP_001235594.1| uncharacterized protein LOC100306220 [Glycine max] gi|255627901|gb|ACU14295.1| unknown [Glycine max]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 79/92 (85%), Gaps = 2/92 (2%)

Query: 24  YYYAGCADY-QEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERS 82
           +YYAG  D+ +EPHFL +CFLCRKPLG + DIFMYRGNTPFCSKECRQEQIE+DE+KE+S
Sbjct: 24  FYYAGSEDHSEEPHFLQACFLCRKPLGQSRDIFMYRGNTPFCSKECRQEQIEIDESKEKS 83

Query: 83  WKKSSSSSARKSESN-NSTPSKTVRTGTVAVA 113
           WK SS    R+SE+N NSTP+K VRTGTVAVA
Sbjct: 84  WKLSSKRGVRQSETNQNSTPNKAVRTGTVAVA 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505940|gb|AFK41036.1| unknown [Lotus japonicus]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 77/93 (82%), Gaps = 3/93 (3%)

Query: 24  YYYAGCAD-YQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERS 82
           +YYA   D Y+EPHFL SCFLCRK LG N DIFMYRGNTPFCSKECR+EQIE+DEAKE+S
Sbjct: 23  FYYAISEDSYEEPHFLQSCFLCRKTLGQNKDIFMYRGNTPFCSKECREEQIEIDEAKEKS 82

Query: 83  WKKSSSSSARKSESN-NSTPSKTV-RTGTVAVA 113
           WK+SS    R+SE+N NST +K V RTGTVAVA
Sbjct: 83  WKRSSKRGVRQSENNQNSTTNKAVGRTGTVAVA 115

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512955|ref|XP_003626766.1| hypothetical protein MTR_8g008840 [Medicago truncatula] gi|355520788|gb|AET01242.1| hypothetical protein MTR_8g008840 [Medicago truncatula]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 73/92 (79%), Gaps = 2/92 (2%)

Query: 24  YYYAGCAD-YQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERS 82
           +YY G  D Y EPHFL +C+LCRKPLG N DIFMYRGNTPFCS ECRQEQIE+DE+KE+S
Sbjct: 24  FYYGGSEDFYDEPHFLQACYLCRKPLGQNKDIFMYRGNTPFCSNECRQEQIEIDESKEKS 83

Query: 83  WKKSSSSSARKSESN-NSTPSKTVRTGTVAVA 113
           WK S+    R SE+N NS+ +K VR+ +VAVA
Sbjct: 84  WKISTKRGVRNSETNQNSSNNKAVRSESVAVA 115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432358|ref|XP_004133966.1| PREDICTED: uncharacterized protein LOC101206344 [Cucumis sativus] gi|449487564|ref|XP_004157689.1| PREDICTED: uncharacterized protein LOC101227417 [Cucumis sativus]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 80/106 (75%), Gaps = 17/106 (16%)

Query: 21  TMSYYYAGCADY--QEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEA 78
           T   +YAGCADY   EPHFL++C LCRK LG NSDIFMYRGNTPFCSKECRQEQIE+DEA
Sbjct: 3   TAPLFYAGCADYLLHEPHFLEACSLCRKALGRNSDIFMYRGNTPFCSKECRQEQIEIDEA 62

Query: 79  KERSWKKSSSSSA-----------RKSESNNSTPSKTVRTGTVAVA 113
           KE+SW++SSSSS+           RK E+N     KTVR+GTVAVA
Sbjct: 63  KEKSWRRSSSSSSSSSSSKSSQSHRKQEANK----KTVRSGTVAVA 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067568|ref|XP_002302507.1| predicted protein [Populus trichocarpa] gi|222844233|gb|EEE81780.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 75/92 (81%), Gaps = 3/92 (3%)

Query: 25  YYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEA---KER 81
           +Y+GC D Q+PHFL++CFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIE+DE+   K  
Sbjct: 3   HYSGCMDSQKPHFLEACFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEVDESTRKKSW 62

Query: 82  SWKKSSSSSARKSESNNSTPSKTVRTGTVAVA 113
               SSS S RKS+  +ST  KTVRTGTVAVA
Sbjct: 63  KMSSSSSRSTRKSDPKDSTSKKTVRTGTVAVA 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442317|ref|XP_004138928.1| PREDICTED: uncharacterized protein LOC101206273 [Cucumis sativus] gi|449495951|ref|XP_004159994.1| PREDICTED: uncharacterized LOC101206273 [Cucumis sativus]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 75/90 (83%), Gaps = 1/90 (1%)

Query: 25  YYAGCADYQ-EPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERSW 83
           Y+AG  D++ E HFL++CFLCR+PLG+N DIFMY+GNTPFCSKECRQEQIE+DEA+E+SW
Sbjct: 7   YHAGGEDHRRESHFLEACFLCRRPLGFNRDIFMYKGNTPFCSKECRQEQIEIDEAQEKSW 66

Query: 84  KKSSSSSARKSESNNSTPSKTVRTGTVAVA 113
           + SSSSS+  ++   +T  K VRT TVAVA
Sbjct: 67  RISSSSSSSSADKTTTTNKKNVRTDTVAVA 96

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453293|ref|XP_002268179.1| PREDICTED: uncharacterized protein LOC100264994 isoform 1 [Vitis vinifera] gi|359489225|ref|XP_003633898.1| PREDICTED: uncharacterized protein LOC100264994 isoform 2 [Vitis vinifera]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 76/90 (84%), Gaps = 4/90 (4%)

Query: 25  YYAGCADY-QEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERSW 83
           YYAGC +Y  +PHFL++CFLC+KPLG N+DIFMYRGNTPFCSKECRQEQ+E DEAKE+SW
Sbjct: 15  YYAGCEEYPHQPHFLEACFLCQKPLGNNADIFMYRGNTPFCSKECRQEQMEFDEAKEKSW 74

Query: 84  KKSSSSSARKSESNNSTPSKTVRTGTVAVA 113
              +  S RKS+SN S+ +K VR+GTVAVA
Sbjct: 75  ---NMRSLRKSDSNKSSSNKAVRSGTVAVA 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136362|ref|XP_002326841.1| predicted protein [Populus trichocarpa] gi|118485001|gb|ABK94365.1| unknown [Populus trichocarpa] gi|222835156|gb|EEE73591.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 74/92 (80%), Gaps = 3/92 (3%)

Query: 25  YYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKE---R 81
           YY+GC D  +PHFL++CFLCRK LG NSDI+MYRGNTPFCSKECRQEQIE+D++ E    
Sbjct: 3   YYSGCLDSHKPHFLEACFLCRKTLGRNSDIYMYRGNTPFCSKECRQEQIEIDQSTEKKSW 62

Query: 82  SWKKSSSSSARKSESNNSTPSKTVRTGTVAVA 113
               SSS S RKS+  +STP+KTVRTGTVAVA
Sbjct: 63  KMSSSSSRSVRKSDPKDSTPNKTVRTGTVAVA 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406598|ref|NP_566023.1| uncharacterized protein [Arabidopsis thaliana] gi|13272435|gb|AAK17156.1|AF325088_1 unknown protein [Arabidopsis thaliana] gi|3341687|gb|AAC27469.1| expressed protein [Arabidopsis thaliana] gi|15081775|gb|AAK82542.1| At2g44670/F16B22.16 [Arabidopsis thaliana] gi|21593625|gb|AAM65592.1| unknown [Arabidopsis thaliana] gi|24797042|gb|AAN64533.1| At2g44670/F16B22.16 [Arabidopsis thaliana] gi|110736091|dbj|BAF00018.1| hypothetical protein [Arabidopsis thaliana] gi|330255359|gb|AEC10453.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 22  MSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKER 81
           M+ YY+G    +EPHFL+SC LCRK LG NSDIFMYRG+  FCS ECR+EQIE DEAKER
Sbjct: 1   MASYYSGFLGCEEPHFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKER 60

Query: 82  SWKKSSSSSARK-SESNNSTPSKTVRTGTVAVA 113
            WKKSS S  +  SE+  S    TVRTGT+ VA
Sbjct: 61  KWKKSSRSLRKNSSETKESAAGNTVRTGTLVVA 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2042416	93	AT2G44670 "AT2G44670" [Arabido	0.814	0.989	0.494	8.3e-19
TAIR|locus:2171047	177	AT5G47060 "AT5G47060" [Arabido	0.734	0.468	0.505	8.3e-19
TAIR|locus:2129331	159	AT4G17670 "AT4G17670" [Arabido	0.920	0.654	0.436	1.2e-17
TAIR|locus:2155174	150	AT5G49120 "AT5G49120" [Arabido	0.681	0.513	0.384	5.2e-10
TAIR|locus:2030611	147	AT1G22160 "AT1G22160" [Arabido	0.415	0.319	0.562	6.6e-10
TAIR|locus:2177739	113	AT5G65040 "AT5G65040" [Arabido	0.362	0.362	0.560	2.2e-09
TAIR|locus:2029421	162	AT1G78020 [Arabidopsis thalian	0.415	0.290	0.541	2.9e-09
TAIR|locus:2180429	248	AT5G20700 "AT5G20700" [Arabido	0.407	0.185	0.531	2e-08
TAIR|locus:2077031	267	AT3G22550 "AT3G22550" [Arabido	0.424	0.179	0.510	4.4e-08
TAIR|locus:505006184	126	AT1G53885 "AT1G53885" [Arabido	0.362	0.325	0.487	5.3e-08

TAIR|locus:2042416 AT2G44670 "AT2G44670" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 46/93 (49%), Positives = 55/93 (59%)

Query:    22 MSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEXXXX 81
             M+ YY+G    +EPHFL+SC LCRK LG NSDIFMYRG+  FCS ECR+EQIE DE    
Sbjct:     1 MASYYSGFLGCEEPHFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKER 60

Query:    82 XXXXXXXXXXXXXXXXXXTPS-KTVRTGTVAVA 113
                               + +  TVRTGT+ VA
Sbjct:    61 KWKKSSRSLRKNSSETKESAAGNTVRTGTLVVA 93

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171047 AT5G47060 "AT5G47060" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 44/87 (50%), Positives = 53/87 (60%)

Query:    31 DYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEXXXXXXXXXXXXX 90
             D Q+PHFLDSCFLC+KPLG N DI+MYRG+TPFCS+ECRQEQIE DE             
Sbjct:    91 DIQQPHFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEAKEKKQNLSHSVK 150

Query:    91 XXXXXXXXXTPSKT----VRTGTVAVA 113
                      +P+++       GTVA A
Sbjct:   151 SAMRRKEQSSPTRSRDYAFHNGTVAAA 177

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129331 AT4G17670 "AT4G17670" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 52/119 (43%), Positives = 62/119 (52%)

Query:     2 YGASDQPESASASQIVFTSTMSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNT 61
             Y  S  P S       F +  SYY      Y +PHFLDSCFLC+K LG N DIFMYRG+T
Sbjct:    49 YSVSS-PRSGKFHDFRFDN--SYY-----GYGQPHFLDSCFLCKKRLGDNRDIFMYRGDT 100

Query:    62 PFCSKECRQEQIEMDEXXXXXXXXXXXXXXXXXX---XXXXTPSKT----VRTGTVAVA 113
             PFCS+ECR+EQIE DE                         +P+++     RTGTVA A
Sbjct:   101 PFCSEECREEQIERDEAKEKKQSLSTSVKAMRRNEKRSSSSSPTRSRNYAFRTGTVAAA 159

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155174 AT5G49120 "AT5G49120" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query:     1 SYGASDQPESASASQIVFTSTMSYYYAGCAD-YQEPHFLDSCFLCRKPLGYNSDIFMYRG 59
             S G    P+  + + I+ T+ ++         YQ+  FL+ CFLCR+ L    DI+MY+G
Sbjct:    31 SEGVLISPKVVNKANIIVTTAVTTDTTNLRRCYQDSGFLEHCFLCRRKLLPAKDIYMYKG 90

Query:    60 NTPFCSKECRQEQIEMDE 77
             +  FCS ECR +Q+ MDE
Sbjct:    91 DRAFCSVECRSKQMIMDE 108

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2030611 AT1G22160 "AT1G22160" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 27/48 (56%), Positives = 35/48 (72%)

Query:    30 ADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDE 77
             +DY E  FL SC LC++ L +  DI+MYRG+  FCS ECRQ+QI +DE
Sbjct:    72 SDYSED-FLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDE 118

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177739 AT5G65040 "AT5G65040" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query:    37 FLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDE 77
             FL +C LC + L ++ DI+MYRGN  FCS ECR++QI++DE
Sbjct:    57 FLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDE 97

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2029421 AT1G78020 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 26/48 (54%), Positives = 32/48 (66%)

Query:    31 DYQEP-HFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDE 77
             D+ +  HFL SC LC + L    DI+MYRG+  FCS ECRQEQ+  DE
Sbjct:    82 DFSDAGHFLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDE 129

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2180429 AT5G20700 "AT5G20700" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 25/47 (53%), Positives = 31/47 (65%)

Query:    31 DYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDE 77
             ++Q   FL+SC+LCRK L +  DIF+YRG   FCS ECR   I  DE
Sbjct:   176 EFQGLGFLNSCYLCRKKL-HGQDIFIYRGEKAFCSTECRSSHIANDE 221

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2077031 AT3G22550 "AT3G22550" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 25/49 (51%), Positives = 30/49 (61%)

Query:    30 ADYQEPH-FLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDE 77
             +DY  P  FL  C  C+K LG   DIFMYRG+  FCS ECR  ++ M E
Sbjct:   214 SDYSPPDSFLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSE 262

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:505006184 AT1G53885 "AT1G53885" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query:    37 FLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDE 77
             FL +C LC K L  + D++MYRG+  FCS+ECR+ Q+ +D+
Sbjct:    42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDD 82

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
pfam04570	59	pfam04570, DUF581, Protein of unknown function (DU	3e-27

>gnl|CDD|218153 pfam04570, DUF581, Protein of unknown function (DUF581)

 Score = 94.7 bits (236), Expect = 3e-27
 Identities = 32/56 (57%), Positives = 37/56 (66%)

Query: 25 YYAGCADYQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKE 80
                     HFL SCFLC+K LG   DI+MYRG   FCS+ECRQ+Q+EMDEAKE
Sbjct: 4  AAGDGGGSPTGHFLSSCFLCKKKLGPGKDIYMYRGEKAFCSEECRQQQMEMDEAKE 59

Family of uncharacterized proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PF04570	58	DUF581: Protein of unknown function (DUF581); Inte	99.95
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	95.65
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	94.79
PF06467	43	zf-FCS: MYM-type Zinc finger with FCS sequence mot	93.17
COG4068	64	Uncharacterized protein containing a Zn-ribbon [Fu	92.05
COG2075	66	RPL24A Ribosomal protein L24E [Translation, riboso	90.18
PRK01343	57	zinc-binding protein; Provisional	88.29
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	87.09
PRK00418	62	DNA gyrase inhibitor; Reviewed	85.47

>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins

Probab=99.95  E-value=1.8e-28  Score=160.50  Aligned_cols=49  Identities=55%  Similarity=1.120  Sum_probs=47.0

Q ss_pred             CCCchhhhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHHHHHHHH
Q 045147           32 YQEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKE   80 (113)
Q Consensus        32 ~~~~~FL~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~~DE~~E   80 (113)
                      .++.+||++|++|+|+|.+++||||||||+||||.|||++||++||++|
T Consensus        10 ~~~~~FL~~C~~C~k~L~~~~DiymYrGd~aFCS~ECR~~qi~~de~~E   58 (58)
T PF04570_consen   10 FPSEHFLSFCYLCKKKLDPGKDIYMYRGDKAFCSEECRSQQILMDEEKE   58 (58)
T ss_pred             CCcHHHHHHHHccCCCCCCCCCeeeeccccccccHHHHHHHHHHHHhcC
Confidence            4778999999999999999999999999999999999999999999976

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=95.65  E-value=0.015  Score=38.25  Aligned_cols=31  Identities=32%  Similarity=0.768  Sum_probs=25.1

Q ss_pred             hcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHHHHHH
Q 045147           39 DSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEA   78 (113)
Q Consensus        39 ~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~~DE~   78 (113)
                      ..|-.|.+++.+         |..|||.+||+.....-+.
T Consensus         4 kHC~~CG~~Ip~---------~~~fCS~~C~~~~~k~qk~   34 (59)
T PF09889_consen    4 KHCPVCGKPIPP---------DESFCSPKCREEYRKRQKR   34 (59)
T ss_pred             CcCCcCCCcCCc---------chhhhCHHHHHHHHHHHHH
Confidence            469999999986         5899999999987655444

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=94.79  E-value=0.015  Score=36.10  Aligned_cols=31  Identities=32%  Similarity=0.786  Sum_probs=24.9

Q ss_pred             hhhhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHH
Q 045147           36 HFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQ   72 (113)
Q Consensus        36 ~FL~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~q   72 (113)
                      .|+++|-.|-|.+.+.      -.+..+||++||..-
T Consensus         4 ~F~~yC~~Cdk~~~~~------~~~~lYCSe~Cr~~D   34 (43)
T PF12855_consen    4 AFNDYCIVCDKQIDPP------DDGSLYCSEECRLKD   34 (43)
T ss_pred             hhhhHHHHhhccccCC------CCCccccCHHHHhHh
Confidence            6999999999999553      235678999999764

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.17  E-value=0.072  Score=31.10  Aligned_cols=34  Identities=26%  Similarity=0.707  Sum_probs=22.1

Q ss_pred             hhcCcCCCCCCCCCCC--eeEEcCC-CcccChhhHHH
Q 045147           38 LDSCFLCRKPLGYNSD--IFMYRGN-TPFCSKECRQE   71 (113)
Q Consensus        38 L~~C~~C~K~L~~~~D--IymYrGe-~AFCS~ECR~~   71 (113)
                      ...|..|++.+....+  +..+.|. .-|||..|+..
T Consensus         6 ~~~C~~C~~~~~~~~~~~~~~~~g~~~~FCS~~C~~~   42 (43)
T PF06467_consen    6 MKTCSYCKKYIPNKPTMIEVQYDGKMKQFCSQSCLSS   42 (43)
T ss_dssp             CEE-TTT--EEECCC----EE-TTTTSCCSSHHHHHH
T ss_pred             CCcCcccCCcccCCCccccccccCcccChhCHHHHhh
Confidence            5679999999976555  6777765 58999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.

>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]

Probab=92.05  E-value=0.15  Score=34.40  Aligned_cols=33  Identities=30%  Similarity=0.658  Sum_probs=25.6

Q ss_pred             hcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHHHHHHHHhh
Q 045147           39 DSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERS   82 (113)
Q Consensus        39 ~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~~DE~~Ek~   82 (113)
                      +.|--|.+.+.++         .-|||++|+  +|+..|++.+.
T Consensus         9 ~HC~VCg~aIp~d---------e~~CSe~C~--eil~ker~R~r   41 (64)
T COG4068           9 RHCVVCGKAIPPD---------EQVCSEECG--EILNKERKRQR   41 (64)
T ss_pred             ccccccCCcCCCc---------cchHHHHHH--HHHHHHHHHHH
Confidence            5699999999875         579999997  46776665544

>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

Probab=90.18  E-value=0.27  Score=33.41  Aligned_cols=32  Identities=28%  Similarity=0.713  Sum_probs=28.4

Q ss_pred             hcCcCCCCCCCCCCCeeEEcCCC---cccChhhHH
Q 045147           39 DSCFLCRKPLGYNSDIFMYRGNT---PFCSKECRQ   70 (113)
Q Consensus        39 ~~C~~C~K~L~~~~DIymYrGe~---AFCS~ECR~   70 (113)
                      ..|.+|.++|.||..|.--++|.   =|||..|+.
T Consensus         4 ~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k   38 (66)
T COG2075           4 RVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEK   38 (66)
T ss_pred             eEecCcCCccCCCceEEEEecCCeEEEEechhHHH
Confidence            47999999999999988888885   499999998

>PRK01343 zinc-binding protein; Provisional

Probab=88.29  E-value=0.39  Score=31.63  Aligned_cols=38  Identities=32%  Similarity=0.633  Sum_probs=26.7

Q ss_pred             hhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHHHHHHHHhhhcc
Q 045147           38 LDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERSWKK   85 (113)
Q Consensus        38 L~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~~DE~~Ek~~~~   85 (113)
                      ...|-.|+|+...        -..+|||..||.  |.+-.+......+
T Consensus         9 ~~~CP~C~k~~~~--------~~rPFCS~RC~~--iDLg~W~~e~Y~I   46 (57)
T PRK01343          9 TRPCPECGKPSTR--------EAYPFCSERCRD--IDLNRWLSGSYVI   46 (57)
T ss_pred             CCcCCCCCCcCcC--------CCCcccCHHHhh--hhHHHHhCCCccc
Confidence            4679999998752        235999999985  5666665554444

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=87.09  E-value=0.25  Score=32.33  Aligned_cols=35  Identities=29%  Similarity=0.723  Sum_probs=18.3

Q ss_pred             cCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHHHHHHHH
Q 045147           40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKE   80 (113)
Q Consensus        40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~~DE~~E   80 (113)
                      .|-.|+|..... +-.   .-.+|||..||  .|.+-.+..
T Consensus         4 ~CP~C~k~~~~~-~~n---~~rPFCS~RCk--~iDLg~W~~   38 (57)
T PF03884_consen    4 KCPICGKPVEWS-PEN---PFRPFCSERCK--LIDLGRWAN   38 (57)
T ss_dssp             E-TTT--EEE-S-SSS---S--SSSSHHHH--HHHHS-SSS
T ss_pred             cCCCCCCeeccc-CCC---CcCCcccHhhc--ccCHHHHhc
Confidence            588899988642 111   23799999998  455554433

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=85.47  E-value=0.56  Score=31.32  Aligned_cols=42  Identities=31%  Similarity=0.687  Sum_probs=28.1

Q ss_pred             hhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHHHHHHHHhhhcc
Q 045147           38 LDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERSWKK   85 (113)
Q Consensus        38 L~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~~DE~~Ek~~~~   85 (113)
                      .-.|-.|+|+..-. .---|   .+|||..|+  .|.+-++......+
T Consensus         6 ~v~CP~C~k~~~w~-~~~~~---rPFCS~RCk--~IDLg~W~~e~y~I   47 (62)
T PRK00418          6 TVNCPTCGKPVEWG-EISPF---RPFCSKRCQ--LIDLGEWAAEEKRI   47 (62)
T ss_pred             cccCCCCCCccccc-CCCCc---CCcccHHHH--hhhHHHHHcCCccc
Confidence            45799999997521 11122   599999997  46777776655555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	91.3
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	90.42
2l8e_A	49	Polyhomeotic-like protein 1; DNA binding protein;	89.25
1lv3_A	68	Hypothetical protein YACG; zinc finger, rubredoxin	87.49

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=91.30  E-value=0.14  Score=33.45  Aligned_cols=37  Identities=27%  Similarity=0.573  Sum_probs=31.2

Q ss_pred             CchhhhcCcCCCCCCCCCCCeeEEcCC-CcccChhhHH
Q 045147           34 EPHFLDSCFLCRKPLGYNSDIFMYRGN-TPFCSKECRQ   70 (113)
Q Consensus        34 ~~~FL~~C~~C~K~L~~~~DIymYrGe-~AFCS~ECR~   70 (113)
                      ...+-..|..|+|.|..|+--|-..|+ .-|||..|=.
T Consensus        16 ~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~   53 (62)
T 2das_A           16 TKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   53 (62)
T ss_dssp             SSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             CCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence            345678999999999999999988887 4699999954

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=90.42  E-value=0.15  Score=30.81  Aligned_cols=29  Identities=38%  Similarity=0.604  Sum_probs=23.5

Q ss_pred             cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147           40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ   70 (113)
Q Consensus        40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~   70 (113)
                      .|..|+++|..  ..|+-++.++||..+|-.
T Consensus        34 ~C~~C~~~L~~--~~f~~~~g~~yC~~~C~~   62 (65)
T 2iyb_E           34 LCSCCSKCLIG--QKFMPVEGMVFCSVECKK   62 (65)
T ss_dssp             BCTTTCCBCTT--SCCEEETTEEESSHHHHH
T ss_pred             ECCCCCCcCCC--CceEEECCEEecCHHHhh
Confidence            68899999963  457778889999999953

>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}

Probab=89.25  E-value=0.089  Score=32.49  Aligned_cols=31  Identities=32%  Similarity=0.658  Sum_probs=24.6

Q ss_pred             hhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHH
Q 045147           38 LDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQ   72 (113)
Q Consensus        38 L~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~q   72 (113)
                      +..|-.|.+.|.+..    .+-.+-|||..||...
T Consensus        18 ~~~C~~CG~~i~~~~----~~r~krFCS~sCR~~y   48 (49)
T 2l8e_A           18 LLKCEYCGKYAPAEQ----FRGSKRFCSMTCAKRY   48 (49)
T ss_dssp             EEECTTTCCEEEGGG----CTTTSSSCSHHHHHHH
T ss_pred             CCcChhccCcccccc----CCCCCccCCHHHHhhh
Confidence            457999999997543    3778899999999753

>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9

Probab=87.49  E-value=0.24  Score=32.64  Aligned_cols=37  Identities=30%  Similarity=0.574  Sum_probs=24.3

Q ss_pred             hhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHHHHHHHH
Q 045147           38 LDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKE   80 (113)
Q Consensus        38 L~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~~DE~~E   80 (113)
                      ...|-.|.|+..-..+    --..+|||+.||.  |.+-+...
T Consensus         9 ~~~CP~Cgkp~~W~~~----~~~rPFCSeRCr~--iDLg~Wa~   45 (68)
T 1lv3_A            9 TVNCPTCGKTVVWGEI----SPFRPFCSKRCQL--IDLGEWAA   45 (68)
T ss_dssp             EEECTTTCCEEECSSS----SSCCSSSSHHHHH--HHHSCSSS
T ss_pred             cCcCCCCCCccccccc----CCCCcccCHHHHh--hhHHHHhc
Confidence            3579999999752222    2357999999985  44444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	92.39
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	91.34
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	91.32
d2dasa1	49	Zinc finger MYM-type protein 5 {Human (Homo sapien	88.53

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.39  E-value=0.039  Score=30.64  Aligned_cols=26  Identities=35%  Similarity=0.714  Sum_probs=23.3

Q ss_pred             cCcCCCCCCCCCCCeeEEcCCCcccCh
Q 045147           40 SCFLCRKPLGYNSDIFMYRGNTPFCSK   66 (113)
Q Consensus        40 ~C~~C~K~L~~~~DIymYrGe~AFCS~   66 (113)
                      .|..|+.+|.|| |.|-|-.-+-||-.
T Consensus         1 tC~tC~n~LVPG-DRFHyvNG~lfCE~   26 (33)
T d1rutx4           1 TCSTCRNRLVPG-DRFHYINGSLFCEH   26 (33)
T ss_dssp             BCTTTCCBCCTT-CEEEEETTEEEEGG
T ss_pred             CcccccccccCC-ceeEEecCEEEEec
Confidence            489999999998 99999988999964

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.058  Score=29.84  Aligned_cols=24  Identities=33%  Similarity=0.798  Sum_probs=20.9

Q ss_pred             cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147           40 SCFLCRKPLGYNSDIFMYRGNTPFCS   65 (113)
Q Consensus        40 ~C~~C~K~L~~~~DIymYrGe~AFCS   65 (113)
                      .|-.|+++|.+  +.|.-|+|+|+|-
T Consensus         1 vCt~Ck~~LaG--qrFTSrde~pYC~   24 (32)
T d2cuqa1           1 VCTGCQTPLAG--QQFTSRDEDPYCV   24 (32)
T ss_dssp             BCSSSCCBCTT--CCEEECSSSEEEH
T ss_pred             CccccCccccC--CccccCCCCccHH
Confidence            38899999973  7899999999994

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.056  Score=29.87  Aligned_cols=24  Identities=33%  Similarity=0.681  Sum_probs=21.0

Q ss_pred             cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147           40 SCFLCRKPLGYNSDIFMYRGNTPFCS   65 (113)
Q Consensus        40 ~C~~C~K~L~~~~DIymYrGe~AFCS   65 (113)
                      .|..|++.|.+  +.|+-|-++|||-
T Consensus         1 ~C~~C~~~L~G--Qry~~rd~~PyC~   24 (32)
T d2d8za2           1 VCTACRKQLSG--QRFTARDDFAYCL   24 (32)
T ss_dssp             BCSSSCCBCTT--SCCEESSSSEECH
T ss_pred             CcccCCccccC--ceeeecCCCeehH
Confidence            38999999973  7899999999994

>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: TRASH domain
domain: Zinc finger MYM-type protein 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.16  Score=30.33  Aligned_cols=37  Identities=27%  Similarity=0.573  Sum_probs=30.2

Q ss_pred             CchhhhcCcCCCCCCCCCCCeeEEcCC-CcccChhhHH
Q 045147           34 EPHFLDSCFLCRKPLGYNSDIFMYRGN-TPFCSKECRQ   70 (113)
Q Consensus        34 ~~~FL~~C~~C~K~L~~~~DIymYrGe-~AFCS~ECR~   70 (113)
                      ....--+|..|+|.|..|.--|-=+|- .-|||.-|-.
T Consensus         9 ~~a~~v~Ca~Ckk~lqKGQTAyqrkGs~~LFCSt~Cl~   46 (49)
T d2dasa1           9 TKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   46 (49)
T ss_dssp             SSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             CCceEeEecccchHHhccchHHhhCCCcceeEcchhhc
Confidence            334567899999999999999988885 5699998854