Citrus Sinensis ID: 045175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGVVFVILFVPETQGLTFLEVEHMWKERAWGSSYNTESLLEHGNSF
Secondary Structure (PSIPRED)
ccHHHHcccccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHEEEEEEHHHHHHccccccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mqafqqftgintvmyynPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFisgssassseVYGWIAVIGLALYITffapgmgpvpwtvnseVYREQYRGICGVVFVILFvpetqgltfLEVEHMWkerawgssyntesllehgnsf
Flexible Loop (DISEMBL)
MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGVVFVILFVPETQGLTFLEVEHMWKERawgssyntesllehgnsf
Low Complexity Region (SEG)
MQAFQQFTGINTVMYYNPTIVQMASFQSNQlalllslavaGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFIsgssasssEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGVVFVILFVPETQGLTFLEVEHMWKERAWGSSYNTESLLEHGNSF
Disordered region (IsUnstruct)
****QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGVVFVILFVPETQGLTFLEVEHMWKERAWGSSY************
Disordered Region (DISOPRED)
MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGVVFVILFVPETQGLTFLEVEHMW*********************
Disordered Region (DISEMBL)
MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGVVFVILFVPETQGLTFLEVEHMWKERAWGSSYNTES********
Disordered Region (DISPRO)
MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGVVFVILFVPETQGLTFLEVEHMWKERAWGSSY************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGVVFVILFVPETQGLTFLEVEHMWKERAWGSSYNTESLLEHGNSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q8VZR6	509	Inositol transporter 1 OS	yes	no	0.988	0.343	0.588	2e-63
Q9C757	580	Probable inositol transpo	no	no	0.225	0.068	0.666	3e-22
Q9ZQP6	580	Probable inositol transpo	no	no	0.254	0.077	0.465	6e-17
O23492	582	Inositol transporter 4 OS	no	no	0.225	0.068	0.481	8e-17
B4P624	856	Facilitated trehalose tra	N/A	no	0.932	0.192	0.3	1e-16
B4QBN2	857	Facilitated trehalose tra	N/A	no	0.920	0.190	0.297	3e-16
Q01440	547	Membrane transporter D1 O	N/A	no	0.898	0.290	0.292	4e-16
B4HNS0	857	Facilitated trehalose tra	N/A	no	0.932	0.192	0.295	5e-16
A1Z8N1	857	Facilitated trehalose tra	yes	no	0.932	0.192	0.295	7e-16
Q291H8	868	Facilitated trehalose tra	yes	no	0.932	0.190	0.3	2e-15

>sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 149/226 (65%), Gaps = 51/226 (22%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQMA F SNQLAL LSL VA  NA GT++GIY IDH GRK
Sbjct: 282 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 341

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSS-EVYGWIAVIGLALYITFFAPGMGPVPWTV 119
           KLALSSL GVIISL++LS +F   S  SS   +YGW+AV+GLALYI FFAPGMGPVPWTV
Sbjct: 342 KLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTV 401

Query: 120 NSEVYREQYRGICG-----------------------------------------VVFVI 138
           NSE+Y +QYRGICG                                         V+FVI
Sbjct: 402 NSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVI 461

Query: 139 LFVPETQGLTFLEVEHMWKERA------WGSSY---NTESLLEHGN 175
           +FVPETQGLTF EVE +WKERA      WGSS    N E LLE G+
Sbjct: 462 VFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNNMEGLLEQGS 507

Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 62/81 (76%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +Q FQQF GINTVMYY+PTIVQ+A F SN+ ALLLSL  AG NA G+II IY ID  GRK
Sbjct: 282 LQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRK 341

Query: 61  KLALSSLTGVIISLVLLSWAF 81
           KL + SL GVIISL +L+  F
Sbjct: 342 KLLIISLFGVIISLGILTGVF 362

Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 61/86 (70%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +Q  QQF GINTVMYY+PTI+Q A + SN+ A+ L+L  +G NAVG+++ +  +D +GR+
Sbjct: 283 VQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALITSGLNAVGSVVSMMFVDRYGRR 342

Query: 61  KLALSSLTGVIISLVLLSWAFISGSS 86
           KL + S+ G+I  LV+L+  F   S+
Sbjct: 343 KLMIISMFGIITCLVILAAVFNEASN 368

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 59/81 (72%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +Q  QQF GINTVMYY+P+IVQ A + SN+ A+ LSL  +G NA+G+I+ +  +D +GR+
Sbjct: 284 VQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRR 343

Query: 61  KLALSSLTGVIISLVLLSWAF 81
           KL + S+ G+I  L++L+  F
Sbjct: 344 KLMIISMFGIIACLIILATVF 364

Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol.

Arabidopsis thaliana (taxid: 3702)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 91/210 (43%), Gaps = 45/210 (21%)

Query: 4   FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA 63
           FQQF+GIN V++Y   I + A   S     + ++ V   N V T IGI LID  GRK L 
Sbjct: 645 FQQFSGINAVIFYTVQIFKDAG--STIDGNVCTIIVGVVNFVATFIGILLIDRAGRKILL 702

Query: 64  LSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEV 123
            +S   ++++L +L   F   +        GW+ +    +YI  F+ G GP+PW +  E+
Sbjct: 703 YASDIAMVLTLFVLGGFFYCKAHGPDVSHLGWLPLTCFVVYILGFSVGFGPIPWLMMGEI 762

Query: 124 YREQYRG---------------------------------------IC--GVVFVILFVP 142
              + RG                                       IC  G+ FVIL+VP
Sbjct: 763 LPAKIRGAAASVATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAICFVGLFFVILYVP 822

Query: 143 ETQGLTFLEVEH--MWKERAWGSSYNTESL 170
           ETQG T  ++E   M + R   S  N + L
Sbjct: 823 ETQGKTLEDIERKMMGRVRRMSSVANIKPL 852

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B4QBN2|TRE11_DROSI Facilitated trehalose transporter Tret1-1 OS=Drosophila simulans GN=Tret1-1 PE=3 SV=2

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 4   FQQFTGINTVMYYNPTIVQMA--SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKK 61
           FQQF+GIN V++Y   I + A  +  SN    L ++ V   N   T +GI LID  GRK 
Sbjct: 646 FQQFSGINAVIFYTVQIFKDAGSTIDSN----LCTIIVGIVNFFATFMGILLIDRLGRKI 701

Query: 62  LALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNS 121
           L   S   +I++L +L   F   +        GW+ +    +YI  F+ G GP+PW +  
Sbjct: 702 LLYISDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMG 761

Query: 122 EVYREQYRG---------------------------------------IC--GVVFVILF 140
           E+   + RG                                       IC  G+ FVI++
Sbjct: 762 EILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTGAMGAHGAFWLFGAICFVGLFFVIIY 821

Query: 141 VPETQGLTFLEVEH--MWKERAWGSSYNTESL 170
           VPETQG T  ++E   M + R   S  N + L
Sbjct: 822 VPETQGKTLEDIERKMMGRVRRMSSVANIKPL 853

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila simulans (taxid: 7240)

>sp|Q01440|GTR1_LEIDO Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 105/202 (51%), Gaps = 43/202 (21%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +Q  QQF+GINT+MYY+  I+  A F+   + ++LS+ +A  NA+ T + I+ +D FGR+
Sbjct: 246 LQIIQQFSGINTIMYYSSVILYDAGFRDAIMPVVLSIPLAFMNALFTAVAIFTVDRFGRR 305

Query: 61  KLALSSLTGVIISLVLLS-WAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTV 119
           ++ L S+ G ++ LV+++   F  G+  S S V G + +  LA+++  +APG+G +PW +
Sbjct: 306 RMLLISVFGCLVLLVVIAIIGFFIGTRISYS-VGGGLFLALLAVFLALYAPGIGCIPWVI 364

Query: 120 NSEVYREQYR-----------------------------GI------------CGVVFVI 138
             E++    R                             G+             G +FV 
Sbjct: 365 MGEIFPTHLRTSAASVATMANWGANVLVSQVFPILMGAIGVGGTFTIISGLMALGCIFVY 424

Query: 139 LFVPETQGLTFLEVEHMWKERA 160
            F  ET+GLT  ++++M+++RA
Sbjct: 425 FFAVETKGLTLEQIDNMFRKRA 446

Leishmania donovani (taxid: 5661)

>sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 91/210 (43%), Gaps = 45/210 (21%)

Query: 4   FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA 63
           FQQF+GIN V++Y   I + A   S     L ++ V   N + T IGI LID  GRK L 
Sbjct: 646 FQQFSGINAVIFYTVQIFKDAG--STIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILL 703

Query: 64  LSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEV 123
             S   ++++L +L   F   ++       GW+ +    +YI  F+ G GP+PW +  E+
Sbjct: 704 YVSDIAMVLTLFVLGGFFYCKANGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEI 763

Query: 124 YREQYRG---------------------------------------IC--GVVFVILFVP 142
              + RG                                       IC  G+ FVI++VP
Sbjct: 764 LPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVP 823

Query: 143 ETQGLTFLEVEH--MWKERAWGSSYNTESL 170
           ETQG T  ++E   M + R   S  N + L
Sbjct: 824 ETQGKTLEDIERKMMGRVRRMSSVANIKPL 853

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila sechellia (taxid: 7238)

>sp|A1Z8N1|TRE11_DROME Facilitated trehalose transporter Tret1-1 OS=Drosophila melanogaster GN=Tret1-1 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 90/210 (42%), Gaps = 45/210 (21%)

Query: 4   FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA 63
           FQQF+GIN V++Y   I + A   S     L ++ V   N + T IGI LID  GRK L 
Sbjct: 646 FQQFSGINAVIFYTVQIFKDAG--STIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILL 703

Query: 64  LSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEV 123
             S   ++++L +L   F   +        GW+ +    +YI  F+ G GP+PW +  E+
Sbjct: 704 YVSDIAMVLTLFVLGGFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEI 763

Query: 124 YREQYRG---------------------------------------IC--GVVFVILFVP 142
              + RG                                       IC  G+ FVI++VP
Sbjct: 764 LPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVP 823

Query: 143 ETQGLTFLEVEH--MWKERAWGSSYNTESL 170
           ETQG T  ++E   M + R   S  N + L
Sbjct: 824 ETQGKTLEDIERKMMGRVRRMSSVANIKPL 853

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila melanogaster (taxid: 7227)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 88/210 (41%), Gaps = 45/210 (21%)

Query: 4   FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA 63
           FQQ +GIN V++Y  +I + A   S     L ++ V   N + T I   LID  GRK L 
Sbjct: 657 FQQLSGINAVIFYTVSIFKDAG--STIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILL 714

Query: 64  LSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEV 123
             S   +II+L +L   F   S        GW+ +    +YI  F+ G GP+PW +  E+
Sbjct: 715 YVSNIAMIITLFVLGGFFYCKSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEI 774

Query: 124 YREQYRG---------------------------------------IC--GVVFVILFVP 142
              + RG                                       IC  G+ FVIL+VP
Sbjct: 775 LPSKIRGSAASVATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVP 834

Query: 143 ETQGLTFLEVEH--MWKERAWGSSYNTESL 170
           ETQG T  ++E   M + R   S  N + L
Sbjct: 835 ETQGKTLEDIERKMMGRVRRMSSVANMKPL 864

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
255577741	307	sugar transporter, putative [Ricinus com	0.988	0.570	0.652	2e-72
224093162	287	predicted protein [Populus trichocarpa]	0.994	0.613	0.645	1e-71
224106503	307	predicted protein [Populus trichocarpa]	0.994	0.573	0.631	7e-71
224133102	489	predicted protein [Populus trichocarpa]	0.988	0.357	0.629	9e-70
224101699	231	predicted protein [Populus trichocarpa]	0.994	0.761	0.642	2e-67
357501429	500	hypothetical protein MTR_7g005910 [Medic	0.971	0.344	0.612	7e-64
449468830	495	PREDICTED: inositol transporter 1-like [	0.966	0.345	0.594	5e-63
297824309	521	hypothetical protein ARALYDRAFT_322009 [	0.988	0.335	0.592	2e-62
2289003	521	putative membrane transporter [Arabidops	0.988	0.335	0.588	9e-62
30689342	509	putative inositol transporter 1 [Arabido	0.988	0.343	0.588	1e-61

>gi|255577741|ref|XP_002529745.1| sugar transporter, putative [Ricinus communis] gi|223530743|gb|EEF32611.1| sugar transporter, putative [Ricinus communis]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/216 (65%), Positives = 156/216 (72%), Gaps = 41/216 (18%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQMA F SNQLALLLSL VA  NA GTI+GIYLIDHFGR 
Sbjct: 90  LQAFQQFTGINTVMYYSPTIVQMAGFSSNQLALLLSLIVAAMNAAGTILGIYLIDHFGRT 149

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVN 120
           KLALSSLTGVI+SL +L+ AF   SS SSS +YGW+AV+GLALYI FFAPGMGPVPWTVN
Sbjct: 150 KLALSSLTGVIVSLFILAGAFFGQSSDSSSGIYGWLAVVGLALYIAFFAPGMGPVPWTVN 209

Query: 121 SEVYREQYRGICG-----------------------------------------VVFVIL 139
           SE+Y E YRGICG                                         +VF+IL
Sbjct: 210 SEIYPEAYRGICGGMSATVNWISNLIVAQTFLSVANAVGTGATFLILAGVAIAAIVFIIL 269

Query: 140 FVPETQGLTFLEVEHMWKERAWGSSYNTESLLEHGN 175
           FVPET+GLTF+EVE +WKERAWGSSYNTESLLE GN
Sbjct: 270 FVPETKGLTFVEVEQIWKERAWGSSYNTESLLERGN 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093162|ref|XP_002309815.1| predicted protein [Populus trichocarpa] gi|222852718|gb|EEE90265.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/217 (64%), Positives = 157/217 (72%), Gaps = 41/217 (18%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQMA F+SNQLALLLSL VA  NA GT++GIYLIDHFGRK
Sbjct: 70  LQAFQQFTGINTVMYYSPTIVQMAGFRSNQLALLLSLIVAAMNAAGTVLGIYLIDHFGRK 129

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVN 120
           KLALSSLTGVI SLV+L+ AF   SS SS+E++GWIAV+GLALYI FF+PGMGPVPWTVN
Sbjct: 130 KLALSSLTGVIASLVVLAGAFFGKSSGSSNELFGWIAVLGLALYIAFFSPGMGPVPWTVN 189

Query: 121 SEVYREQYRGICG-----------------------------------------VVFVIL 139
           SE+Y EQYRGICG                                          VFVI+
Sbjct: 190 SEIYPEQYRGICGGMSATVNWISNLIVAETFLSVAEAVGTGWTFVILACIAVLAFVFVIV 249

Query: 140 FVPETQGLTFLEVEHMWKERAWGSSYNTESLLEHGNS 176
           +VPET GLTF+EVE +WKERAWGS YNTESLLE GN 
Sbjct: 250 YVPETVGLTFVEVEQIWKERAWGSGYNTESLLERGND 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106503|ref|XP_002333672.1| predicted protein [Populus trichocarpa] gi|222837972|gb|EEE76337.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 137/217 (63%), Positives = 154/217 (70%), Gaps = 41/217 (18%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQMA F SNQLALLLSL +A  NA GT++GIYLIDHFGRK
Sbjct: 90  LQAFQQFTGINTVMYYSPTIVQMAGFSSNQLALLLSLVIAAMNAAGTVLGIYLIDHFGRK 149

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVN 120
           KLA+SSL GVI SL +L+ AF   SS SS+E+YGWIAV+GLALYI  F+PGMGPVPWTVN
Sbjct: 150 KLAISSLAGVIASLFILAGAFFGKSSGSSNELYGWIAVLGLALYIACFSPGMGPVPWTVN 209

Query: 121 SEVYREQYRGICG-----------------------------------------VVFVIL 139
           SE+Y EQYRGICG                                         VVFVI+
Sbjct: 210 SEIYPEQYRGICGGMSATVNWISNLIVAQTFLSIAEAVGTGSTFLMLAGIAVLAVVFVIM 269

Query: 140 FVPETQGLTFLEVEHMWKERAWGSSYNTESLLEHGNS 176
           +VPET GL F+EVE +WKERAWGSSYNTESLLE GN 
Sbjct: 270 YVPETMGLAFVEVEQIWKERAWGSSYNTESLLEQGND 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133102|ref|XP_002327961.1| predicted protein [Populus trichocarpa] gi|222837370|gb|EEE75749.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 136/216 (62%), Positives = 153/216 (70%), Gaps = 41/216 (18%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQMA F SNQLALLLSL +A  NA GT++GIYLIDHFGRK
Sbjct: 274 LQAFQQFTGINTVMYYSPTIVQMAGFSSNQLALLLSLVIAAMNAAGTVLGIYLIDHFGRK 333

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVN 120
           KLA+SSL GVI SL +L+ AF   SS SS+E+YGWIAV+GLAL I  F+PGMGPVPWTVN
Sbjct: 334 KLAISSLAGVIASLFILAGAFFGKSSGSSNELYGWIAVLGLALCIACFSPGMGPVPWTVN 393

Query: 121 SEVYREQYRGICG-----------------------------------------VVFVIL 139
           SE+Y EQYRGICG                                         VVFVI+
Sbjct: 394 SEIYPEQYRGICGGMSATVNWISNLIVAQTFLSIAEAVGTGSTFLMLAGIAVLAVVFVIM 453

Query: 140 FVPETQGLTFLEVEHMWKERAWGSSYNTESLLEHGN 175
           +VPET GL F+EVE +WKERAWGSSYNTESLLE GN
Sbjct: 454 YVPETMGLAFVEVEQIWKERAWGSSYNTESLLEQGN 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101699|ref|XP_002334251.1| predicted protein [Populus trichocarpa] gi|222869966|gb|EEF07097.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 133/207 (64%), Positives = 152/207 (73%), Gaps = 31/207 (14%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQ+A F SNQLALLLSL +   NA GT++GIYLIDHFGRK
Sbjct: 14  VQAFQQFTGINTVMYYSPTIVQIAGFSSNQLALLLSLVIVAMNAAGTVLGIYLIDHFGRK 73

Query: 61  KLALSSLTGVIISLV-LLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTV 119
           +LA+SSL GVI SL  +L+ AF   SS SS+E+YGWIAV+GLAL I  F+PGMGPVPWTV
Sbjct: 74  RLAISSLAGVIASLFNILAGAFFGKSSGSSNELYGWIAVLGLALCIACFSPGMGPVPWTV 133

Query: 120 NSEVYREQYRGICG------------------------------VVFVILFVPETQGLTF 149
           NSE+Y EQYRGICG                              VVFVI++VPET GL F
Sbjct: 134 NSEIYPEQYRGICGGMSATVNWISNLILGTGSTFLMLAGIAVLAVVFVIMYVPETMGLAF 193

Query: 150 LEVEHMWKERAWGSSYNTESLLEHGNS 176
           +EVE +WKERAWGSSYNTESLLE GN 
Sbjct: 194 VEVEQVWKERAWGSSYNTESLLEQGND 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501429|ref|XP_003621003.1| hypothetical protein MTR_7g005910 [Medicago truncatula] gi|124365541|gb|ABN09775.1| General substrate transporter [Medicago truncatula] gi|355496018|gb|AES77221.1| hypothetical protein MTR_7g005910 [Medicago truncatula]

 Score =  248 bits (633), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 131/214 (61%), Positives = 152/214 (71%), Gaps = 42/214 (19%)

Query: 3   AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKL 62
           AFQQFTGINTVMYY+PTIVQMA F +NQLALLLSL VAG NAVGTI+GIYLID+ GRKKL
Sbjct: 286 AFQQFTGINTVMYYSPTIVQMAGFHANQLALLLSLIVAGMNAVGTILGIYLIDNTGRKKL 345

Query: 63  ALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSE 122
           ALSSL GVI SL++LS AF   SS S++EVYGW+AVIGL LYI FF+PGMGPVPWT+NSE
Sbjct: 346 ALSSLAGVIASLIMLSVAFYKQSS-STNEVYGWLAVIGLGLYIGFFSPGMGPVPWTINSE 404

Query: 123 VYREQYRGICG-----------------------------------------VVFVILFV 141
           +Y E+YRGICG                                          +FV+L+V
Sbjct: 405 IYPEEYRGICGGMAATVCWISNLIVSESFLSIADAIGIASTFLIIAVIAVVAFLFVLLYV 464

Query: 142 PETQGLTFLEVEHMWKERAWGSSYNTESLLEHGN 175
           PETQGLTF EVE +WKERAWG + NT++LLE G+
Sbjct: 465 PETQGLTFDEVELIWKERAWGKNPNTQNLLEQGS 498

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468830|ref|XP_004152124.1| PREDICTED: inositol transporter 1-like [Cucumis sativus] gi|449484700|ref|XP_004156956.1| PREDICTED: inositol transporter 1-like [Cucumis sativus]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 126/212 (59%), Positives = 147/212 (69%), Gaps = 41/212 (19%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQMA F+SNQLALLLSL VA  NA GT++GIYLIDH GRK
Sbjct: 282 LQAFQQFTGINTVMYYSPTIVQMAGFRSNQLALLLSLIVAAMNAAGTVLGIYLIDHVGRK 341

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVN 120
           KLA+SSL+GVI+SL +LS A  +G   S++ + G IAVIGLALYI FF+PGMGPVPWTVN
Sbjct: 342 KLAISSLSGVIVSLAILSGALFAGQYGSTNGLNGCIAVIGLALYIAFFSPGMGPVPWTVN 401

Query: 121 SEVYREQYRGICG-----------------------------------------VVFVIL 139
           SE+Y E YRG+CG                                         +VFV++
Sbjct: 402 SEIYPEAYRGLCGGMSATVNWISNLIVAQTFLSLAEVAGTGLTFLIFAAIAVLAIVFVVV 461

Query: 140 FVPETQGLTFLEVEHMWKERAWGSSYNTESLL 171
           +VPETQGLTF EVE +WKERAWG   NTESLL
Sbjct: 462 YVPETQGLTFEEVERIWKERAWGRDSNTESLL 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824309|ref|XP_002880037.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata] gi|297325876|gb|EFH56296.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 150/226 (66%), Gaps = 51/226 (22%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQMA F SNQLAL LSL VA  NA GT++GIY IDH GRK
Sbjct: 294 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 353

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSS-EVYGWIAVIGLALYITFFAPGMGPVPWTV 119
           KLALSSL GVIISL++LS +F   S ASS   +YGW+AV+GLALYI FFAPGMGPVPWTV
Sbjct: 354 KLALSSLFGVIISLLILSVSFFKQSDASSDGGLYGWLAVLGLALYIAFFAPGMGPVPWTV 413

Query: 120 NSEVYREQYRGICG-----------------------------------------VVFVI 138
           NSE+Y +QYRGICG                                         V+FVI
Sbjct: 414 NSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAFLAVIFVI 473

Query: 139 LFVPETQGLTFLEVEHMWKERA------WGSSY---NTESLLEHGN 175
           +FVPETQGLTF EVE +WKERA      WGSS    N E LLE G+
Sbjct: 474 VFVPETQGLTFSEVEQIWKERAYGDISGWGSSSDSNNMEGLLEQGS 519

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2289003|gb|AAB64332.1| putative membrane transporter [Arabidopsis thaliana]

 Score =  241 bits (615), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 149/226 (65%), Gaps = 51/226 (22%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQMA F SNQLAL LSL VA  NA GT++GIY IDH GRK
Sbjct: 294 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 353

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSS-EVYGWIAVIGLALYITFFAPGMGPVPWTV 119
           KLALSSL GVIISL++LS +F   S  SS   +YGW+AV+GLALYI FFAPGMGPVPWTV
Sbjct: 354 KLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTV 413

Query: 120 NSEVYREQYRGICG-----------------------------------------VVFVI 138
           NSE+Y +QYRGICG                                         V+FVI
Sbjct: 414 NSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVI 473

Query: 139 LFVPETQGLTFLEVEHMWKERA------WGSSY---NTESLLEHGN 175
           +FVPETQGLTF EVE +WKERA      WGSS    N E LLE G+
Sbjct: 474 VFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNNMEGLLEQGS 519

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689342|ref|NP_850393.1| putative inositol transporter 1 [Arabidopsis thaliana] gi|75331205|sp|Q8VZR6.1|INT1_ARATH RecName: Full=Inositol transporter 1 gi|17380890|gb|AAL36257.1| putative membrane transporter protein [Arabidopsis thaliana] gi|20465939|gb|AAM20155.1| putative membrane transporter protein [Arabidopsis thaliana] gi|84617967|emb|CAJ00303.1| inositol transporter 1 [Arabidopsis thaliana] gi|330255158|gb|AEC10252.1| putative inositol transporter 1 [Arabidopsis thaliana]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 149/226 (65%), Gaps = 51/226 (22%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +QAFQQFTGINTVMYY+PTIVQMA F SNQLAL LSL VA  NA GT++GIY IDH GRK
Sbjct: 282 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 341

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSS-EVYGWIAVIGLALYITFFAPGMGPVPWTV 119
           KLALSSL GVIISL++LS +F   S  SS   +YGW+AV+GLALYI FFAPGMGPVPWTV
Sbjct: 342 KLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTV 401

Query: 120 NSEVYREQYRGICG-----------------------------------------VVFVI 138
           NSE+Y +QYRGICG                                         V+FVI
Sbjct: 402 NSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVI 461

Query: 139 LFVPETQGLTFLEVEHMWKERA------WGSSY---NTESLLEHGN 175
           +FVPETQGLTF EVE +WKERA      WGSS    N E LLE G+
Sbjct: 462 VFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNNMEGLLEQGS 507

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2058193	509	INT1 "inositol transporter 1"	0.751	0.261	0.671	9.9e-58
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.457	0.139	0.580	7.2e-38
MGI|MGI:2146030	637	Slc2a13 "solute carrier family	0.463	0.128	0.365	9.3e-29
UNIPROTKB|Q96QE2	648	SLC2A13 "Proton myo-inositol c	0.463	0.126	0.365	1.6e-28
RGD|621814	637	Slc2a13 "solute carrier family	0.463	0.128	0.365	2e-28
UNIPROTKB|F1PGX9	652	SLC2A13 "Uncharacterized prote	0.463	0.125	0.365	2.2e-28
UNIPROTKB|E1BML6	648	SLC2A13 "Uncharacterized prote	0.463	0.126	0.365	2.6e-28
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.457	0.139	0.444	3.8e-27
TAIR|locus:2130689	582	INT4 "inositol transporter 4"	0.457	0.139	0.432	1.7e-26
UNIPROTKB|K7GRK4	230	K7GRK4 "Uncharacterized protei	0.180	0.139	0.718	4.7e-22

TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
 Identities = 90/134 (67%), Positives = 102/134 (76%)

Query:     1 MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
             +QAFQQFTGINTVMYY+PTIVQMA F SNQ            NA GT++GIY IDH GRK
Sbjct:   282 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 341

Query:    61 KLALSSLTGVIISLVLLSWAFIXXXXXXXXE-VYGWIAVIGLALYITFFAPGMGPVPWTV 119
             KLALSSL GVIISL++LS +F           +YGW+AV+GLALYI FFAPGMGPVPWTV
Sbjct:   342 KLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTV 401

Query:   120 NSEVYREQYRGICG 133
             NSE+Y +QYRGICG
Sbjct:   402 NSEIYPQQYRGICG 415

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 7.2e-38, Sum P(3) = 7.2e-38
 Identities = 47/81 (58%), Positives = 55/81 (67%)

Query:     1 MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
             +Q FQQF GINTVMYY+PTIVQ+A F SN+          G NA G+II IY ID  GRK
Sbjct:   282 LQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRK 341

Query:    61 KLALSSLTGVIISLVLLSWAF 81
             KL + SL GVIISL +L+  F
Sbjct:   342 KLLIISLFGVIISLGILTGVF 362

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
 Identities = 30/82 (36%), Positives = 53/82 (64%)

Query:     1 MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
             +Q FQQ +GINT+MYY+ TI+QM+  + ++           TN + T++G++L++  GR+
Sbjct:   321 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRR 380

Query:    61 KLALSSLTGVIISLVLLSWAFI 82
             KL   SL G  ++L++L+  F+
Sbjct:   381 KLTFGSLAGTTVALIILALGFL 402

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
 Identities = 30/82 (36%), Positives = 53/82 (64%)

Query:     1 MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
             +Q FQQ +GINT+MYY+ TI+QM+  + ++           TN + T++G++L++  GR+
Sbjct:   332 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRR 391

Query:    61 KLALSSLTGVIISLVLLSWAFI 82
             KL   SL G  ++L++L+  F+
Sbjct:   392 KLTFGSLAGTTVALIILALGFV 413

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
 Identities = 30/82 (36%), Positives = 52/82 (63%)

Query:     1 MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
             +Q FQQ +GINT+MYY+ TI+QM+  + ++           TN + T++G++L++  GR+
Sbjct:   321 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRR 380

Query:    61 KLALSSLTGVIISLVLLSWAFI 82
             KL   SL G  ++L +L+  F+
Sbjct:   381 KLTFGSLAGTTVALTILALGFL 402

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
 Identities = 30/82 (36%), Positives = 53/82 (64%)

Query:     1 MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
             +Q FQQ +GINT+MYY+ TI+QM+  + ++           TN + T++G++L++  GR+
Sbjct:   336 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRR 395

Query:    61 KLALSSLTGVIISLVLLSWAFI 82
             KL   SL G  ++L++L+  F+
Sbjct:   396 KLTFGSLAGTTVALLVLALGFL 417

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
 Identities = 30/82 (36%), Positives = 53/82 (64%)

Query:     1 MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
             +Q FQQ +GINT+MYY+ TI+QM+  + ++           TN + T++G++L++  GR+
Sbjct:   332 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRR 391

Query:    61 KLALSSLTGVIISLVLLSWAFI 82
             KL   SL G  ++L++L+  F+
Sbjct:   392 KLTFGSLAGTTVALIILALGFL 413

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
 Identities = 36/81 (44%), Positives = 53/81 (65%)

Query:     1 MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
             +Q  QQF GINTVMYY+PTI+Q A + SN+          G NAVG+++ +  +D +GR+
Sbjct:   283 VQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALITSGLNAVGSVVSMMFVDRYGRR 342

Query:    61 KLALSSLTGVIISLVLLSWAF 81
             KL + S+ G+I  LV+L+  F
Sbjct:   343 KLMIISMFGIITCLVILAAVF 363

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 35/81 (43%), Positives = 53/81 (65%)

Query:     1 MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
             +Q  QQF GINTVMYY+P+IVQ A + SN+          G NA+G+I+ +  +D +GR+
Sbjct:   284 VQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRR 343

Query:    61 KLALSSLTGVIISLVLLSWAF 81
             KL + S+ G+I  L++L+  F
Sbjct:   344 KLMIISMFGIIACLIILATVF 364

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|K7GRK4 K7GRK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 146 (56.5 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 23/32 (71%), Positives = 28/32 (87%)

Query:    93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVY 124
             Y W A++GL LY+ FFAPGMGP+PWTVNSE+Y
Sbjct:   161 YSWTALLGLILYLVFFAPGMGPMPWTVNSEIY 192

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-24
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-24
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-16
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-04

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 98.6 bits (246), Expect = 2e-24
 Identities = 64/193 (33%), Positives = 91/193 (47%), Gaps = 43/193 (22%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +Q FQQFTGIN +MYY+PTI + A   S   A L+S+ V   N   T + I+L+D FGR+
Sbjct: 291 LQWFQQFTGINAIMYYSPTIFENAGV-STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR 349

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVN 120
            L L    G+ I L +L     S  + SS    G +A++ + L+I FFA G GPVPW + 
Sbjct: 350 PLLLIGAAGMAICLFVLGILGASFVTGSSKSS-GNVAIVFILLFIAFFAMGWGPVPWVIV 408

Query: 121 SEVYREQYR-----------------------------------------GICGVVFVIL 139
           SE++    R                                          + G++FV  
Sbjct: 409 SEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYF 468

Query: 140 FVPETQGLTFLEV 152
           F+PET+G T  E+
Sbjct: 469 FLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 97.0 bits (242), Expect = 4e-24
 Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 46/196 (23%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +Q FQQ TGIN + YY+PTI +         +LL+++ V   N V T I I+L+D FGR+
Sbjct: 260 LQIFQQLTGINAIFYYSPTIFETLGLSD---SLLVTIIVGVVNFVFTFIAIFLVDRFGRR 316

Query: 61  KLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVN 120
            L L    G+ I  ++L  A +     + S+  G +A++ + L+I FFA G GPVPW + 
Sbjct: 317 PLLLLGAAGMAICFLVLGVALL---GVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIV 373

Query: 121 SEVYREQYRGIC----------------------------------------GVVFVILF 140
           SE++    R                                            ++FV  F
Sbjct: 374 SELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFF 433

Query: 141 VPETQGLTFLEVEHMW 156
           VPET+G T  E++ ++
Sbjct: 434 VPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 55/204 (26%)

Query: 4   FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA 63
           FQQF GIN V+YY P I +     S  +ALL ++ V   N   T++ I  +D FGRK L 
Sbjct: 281 FQQFVGINVVLYYAPEIFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 339

Query: 64  LSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEV 123
           +    G+ I +  L  AF + +        G +A++ +  Y+  FA   GPV W + SE+
Sbjct: 340 IIGALGMAIGMFSLGTAFYTQAP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEI 392

Query: 124 YREQYRG-----------------------------------------------ICGVVF 136
           +    RG                                               +   +F
Sbjct: 393 FPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 452

Query: 137 VILFVPETQGLTFLEVEHMWKERA 160
           +  FVPET+G T  E+E +W+   
Sbjct: 453 MWKFVPETKGKTLEEMEALWEPET 476

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 13/140 (9%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60
           +  F    G   ++ Y P  +Q     S   A LL         +G ++G  L D  GR+
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241

Query: 61  K-LALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTV 119
           + L L  L    + L+LL+ A                 ++   L + F      P   T+
Sbjct: 242 RLLLLIGLLLAALGLLLLALAP------------SLALLLVALLLLGFGLGFAFPALLTL 289

Query: 120 NSEVYREQYRGICGVVFVIL 139
            SE+   + RG    +F   
Sbjct: 290 ASELAPPEARGTASGLFNTF 309

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG0569	485	consensus Permease of the major facilitator superf	99.85
KOG0254	513	consensus Predicted transporter (major facilitator	99.72
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.56
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.53
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.33
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.31
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.3
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.25
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.25
PRK10642	490	proline/glycine betaine transporter; Provisional	99.22
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.19
TIGR00891	405	2A0112 putative sialic acid transporter.	99.18
TIGR00898	505	2A0119 cation transport protein.	99.14
TIGR00895	398	2A0115 benzoate transport.	99.14
KOG0569	485	consensus Permease of the major facilitator superf	99.14
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.11
KOG2615	451	consensus Permease of the major facilitator superf	99.11
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.1
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.1
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.1
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.09
TIGR00900	365	2A0121 H+ Antiporter protein.	99.08
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.06
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.06
PRK12307	426	putative sialic acid transporter; Provisional	99.06
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.03
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.03
PRK11663	434	regulatory protein UhpC; Provisional	99.02
PLN00028	476	nitrate transmembrane transporter; Provisional	99.01
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.0
PRK03545	390	putative arabinose transporter; Provisional	99.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.99
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.99
PRK05122	399	major facilitator superfamily transporter; Provisi	98.98
PRK10091	382	MFS transport protein AraJ; Provisional	98.98
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.95
PRK12382	392	putative transporter; Provisional	98.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.94
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.94
PRK10054	395	putative transporter; Provisional	98.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.93
PRK10642	490	proline/glycine betaine transporter; Provisional	98.93
PRK10504	471	putative transporter; Provisional	98.93
PRK03699	394	putative transporter; Provisional	98.92
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.91
PRK15075	434	citrate-proton symporter; Provisional	98.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.9
PRK03893	496	putative sialic acid transporter; Provisional	98.89
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.89
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.89
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.88
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.88
TIGR00898	505	2A0119 cation transport protein.	98.86
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.86
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.86
PRK09952	438	shikimate transporter; Provisional	98.85
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.85
PRK15075	434	citrate-proton symporter; Provisional	98.84
PRK09705	393	cynX putative cyanate transporter; Provisional	98.83
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.79
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.79
PRK09874	408	drug efflux system protein MdtG; Provisional	98.79
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.78
PRK10489	417	enterobactin exporter EntS; Provisional	98.78
PRK03633	381	putative MFS family transporter protein; Provision	98.78
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.77
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.76
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.75
PRK09952	438	shikimate transporter; Provisional	98.74
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.74
PRK12307	426	putative sialic acid transporter; Provisional	98.74
PRK11043	401	putative transporter; Provisional	98.74
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.73
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.72
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.71
PRK10489	417	enterobactin exporter EntS; Provisional	98.71
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.7
PRK03893	496	putative sialic acid transporter; Provisional	98.68
TIGR00901	356	2A0125 AmpG-related permease.	98.68
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.67
PRK10133	438	L-fucose transporter; Provisional	98.67
KOG0254	513	consensus Predicted transporter (major facilitator	98.67
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.65
TIGR00895	398	2A0115 benzoate transport.	98.64
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.63
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.63
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.62
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.61
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.58
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.57
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.57
TIGR00891	405	2A0112 putative sialic acid transporter.	98.56
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.55
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.55
PRK09705	393	cynX putative cyanate transporter; Provisional	98.54
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.54
PF12832	77	MFS_1_like: MFS_1 like family	98.53
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.5
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.5
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.5
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.49
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.49
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.48
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.47
PLN00028	476	nitrate transmembrane transporter; Provisional	98.47
PRK11902	402	ampG muropeptide transporter; Reviewed	98.46
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.46
PTZ00207	591	hypothetical protein; Provisional	98.45
TIGR00893	399	2A0114 d-galactonate transporter.	98.45
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.44
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.4
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.4
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.39
PRK05122	399	major facilitator superfamily transporter; Provisi	98.38
TIGR00901	356	2A0125 AmpG-related permease.	98.38
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.37
PRK15011	393	sugar efflux transporter B; Provisional	98.37
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.36
TIGR00900	365	2A0121 H+ Antiporter protein.	98.35
TIGR00805	633	oat sodium-independent organic anion transporter.	98.35
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.34
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.33
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.3
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.29
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.29
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.27
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.26
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.26
KOG2532	466	consensus Permease of the major facilitator superf	98.25
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.25
PRK12382	392	putative transporter; Provisional	98.25
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.25
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.24
PRK09528	420	lacY galactoside permease; Reviewed	98.24
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.23
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.22
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.21
PRK10504	471	putative transporter; Provisional	98.21
PF13347	428	MFS_2: MFS/sugar transport protein	98.2
PRK11663	434	regulatory protein UhpC; Provisional	98.18
PRK03633	381	putative MFS family transporter protein; Provision	98.18
PRK10091	382	MFS transport protein AraJ; Provisional	98.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.17
PRK03699	394	putative transporter; Provisional	98.17
PRK11010	491	ampG muropeptide transporter; Validated	98.16
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.15
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.11
PRK10429	473	melibiose:sodium symporter; Provisional	98.09
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.08
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.06
PRK09528	420	lacY galactoside permease; Reviewed	98.04
PRK03545	390	putative arabinose transporter; Provisional	98.04
PRK10429	473	melibiose:sodium symporter; Provisional	98.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.99
PRK15011	393	sugar efflux transporter B; Provisional	97.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.95
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.94
PF13347	428	MFS_2: MFS/sugar transport protein	97.93
PRK09669	444	putative symporter YagG; Provisional	97.92
PRK11043	401	putative transporter; Provisional	97.9
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.9
PRK11010	491	ampG muropeptide transporter; Validated	97.9
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.89
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.87
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.84
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.82
PRK10133	438	L-fucose transporter; Provisional	97.82
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.78
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.77
PRK09874	408	drug efflux system protein MdtG; Provisional	97.77
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.77
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.75
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.75
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.75
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.71
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.7
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.66
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.6
PRK09848	448	glucuronide transporter; Provisional	97.59
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.59
KOG2533	495	consensus Permease of the major facilitator superf	97.56
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.55
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.54
KOG2533	495	consensus Permease of the major facilitator superf	97.52
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.52
PRK11902	402	ampG muropeptide transporter; Reviewed	97.5
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.49
PRK11462	460	putative transporter; Provisional	97.47
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.44
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.38
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.37
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.36
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.3
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.26
PRK11462	460	putative transporter; Provisional	97.25
COG2211	467	MelB Na+/melibiose symporter and related transport	97.18
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.15
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.13
PRK09848	448	glucuronide transporter; Provisional	97.1
COG2211	467	MelB Na+/melibiose symporter and related transport	97.08
KOG3762	618	consensus Predicted transporter [General function	97.08
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.97
PRK09669	444	putative symporter YagG; Provisional	96.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.9
KOG2563	480	consensus Permease of the major facilitator superf	96.89
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.89
KOG2532	466	consensus Permease of the major facilitator superf	96.75
PRK10054	395	putative transporter; Provisional	96.67
TIGR00805	633	oat sodium-independent organic anion transporter.	96.6
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.57
COG0477	338	ProP Permeases of the major facilitator superfamil	96.52
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.48
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.43
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.36
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.28
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.23
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.08
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	95.88
TIGR00788	468	fbt folate/biopterin transporter. The only functio	95.71
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.34
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.85
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	94.84
KOG2563	480	consensus Permease of the major facilitator superf	94.76
KOG3626	735	consensus Organic anion transporter [Secondary met	94.45
COG2270	438	Permeases of the major facilitator superfamily [Ge	94.29
PRK15403	413	multidrug efflux system protein MdtM; Provisional	94.27
PRK09584	500	tppB putative tripeptide transporter permease; Rev	94.1
PRK10207	489	dipeptide/tripeptide permease B; Provisional	92.86
KOG3762	618	consensus Predicted transporter [General function	92.84
KOG0637	498	consensus Sucrose transporter and related proteins	92.79
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	92.41
PTZ00207	591	hypothetical protein; Provisional	92.12
KOG3098	461	consensus Uncharacterized conserved protein [Funct	91.44
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.26
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	90.47
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	90.32
PRK15462	493	dipeptide/tripeptide permease D; Provisional	88.51
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	87.7
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	87.61
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	85.34
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	82.48

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.6e-21  Score=150.80  Aligned_cols=155  Identities=30%  Similarity=0.580  Sum_probs=135.6

Q ss_pred             chhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175            2 QAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF   81 (177)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~   81 (177)
                      ...+|++|++.+.+|...++++.|++.++ +.+.+...+++..+..+++.++.||+|||++++.+..++.++.+.+....
T Consensus       278 ~~~qq~sGi~ai~~Yst~i~~~aG~~~~~-a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~  356 (485)
T KOG0569|consen  278 SFAQQFSGINAIFFYSTSIFKTAGFTPEE-AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIAL  356 (485)
T ss_pred             HHHHHhcCcceeHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999998 99999999999999999999999999999999999999999988877665


Q ss_pred             HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh----------------------------
Q 045175           82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG----------------------------  133 (177)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~----------------------------  133 (177)
                      .......  .+..+..++..+.+...++.|.+|++|.+.+|++|++.|+.+.                            
T Consensus       357 ~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~  434 (485)
T KOG0569|consen  357 FLSNSFG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPY  434 (485)
T ss_pred             HHHHHhh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            4443321  3445566778888889999999999999999999999999887                            


Q ss_pred             ------------eeeeeEEeecCCCCCHHHHHHHHhhh
Q 045175          134 ------------VVFVILFVPETQGLTFLEVEHMWKER  159 (177)
Q Consensus       134 ------------~~~~~~~~pet~~~~~~~~~~~~~~~  159 (177)
                                  .++.++.+||||||+.+|+.+..+++
T Consensus       435 ~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  435 VFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             hhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence                        66678899999999999998887766

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.72  E-value=1.7e-17  Score=131.43  Aligned_cols=157  Identities=41%  Similarity=0.715  Sum_probs=131.2

Q ss_pred             chhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175            2 QAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF   81 (177)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~   81 (177)
                      +.++|++|++...+|.+.+++..|.+.+.  ...+.+..+...++..++..+.||+|||++++.+.+.+.++.++++...
T Consensus       303 ~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~  380 (513)
T KOG0254|consen  303 QLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVG  380 (513)
T ss_pred             HHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHH
Confidence            57899999999999999999999987663  5667777788889999999999999999999999999999999888776


Q ss_pred             HhcCCCC-cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh---------------------------
Q 045175           82 ISGSSAS-SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG---------------------------  133 (177)
Q Consensus        82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~---------------------------  133 (177)
                      ....... .........++..+++...++.++++++|.+.+|++|.+.|+.+.                           
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~  460 (513)
T KOG0254|consen  381 VFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGI  460 (513)
T ss_pred             HHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5543221 123345666777788888889999999999999999999999887                           


Q ss_pred             --------------ee-eeeEEeecCCCCCHHHHHHHHhhhc
Q 045175          134 --------------VV-FVILFVPETQGLTFLEVEHMWKERA  160 (177)
Q Consensus       134 --------------~~-~~~~~~pet~~~~~~~~~~~~~~~~  160 (177)
                                    .. +.++++|||+++++||+++.+.+..
T Consensus       461 ~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~  502 (513)
T KOG0254|consen  461 GGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI  502 (513)
T ss_pred             cchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence                          33 6789999999999999998877654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.56  E-value=9.3e-17  Score=125.15  Aligned_cols=149  Identities=37%  Similarity=0.722  Sum_probs=108.6

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~   82 (177)
                      .++++++++...+|.|.+.++.+.+..   ...+....+...++.+++.++.||+|||+.++.+..+++++.+.+.....
T Consensus       262 ~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~  338 (451)
T PF00083_consen  262 FFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFF  338 (451)
T ss_pred             ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            455677878888899988888877765   34455566777888889999999999999999998888887766541111


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh-----------------------------
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG-----------------------------  133 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~-----------------------------  133 (177)
                      ...+..  .......++....+...++.++++..|.+.+|++|++.|+++.                             
T Consensus       339 ~~~~~~--~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~  416 (451)
T PF00083_consen  339 LGVSSS--SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWG  416 (451)
T ss_pred             cccccc--cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            111110  0112233444445555667778889999999999999999887                             


Q ss_pred             ------------eeeeeEEeecCCCCCHHHHHHHH
Q 045175          134 ------------VVFVILFVPETQGLTFLEVEHMW  156 (177)
Q Consensus       134 ------------~~~~~~~~pet~~~~~~~~~~~~  156 (177)
                                  .++.++++|||+++++||+++++
T Consensus       417 ~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  417 VFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             cchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence                        56678999999999999998753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.53  E-value=4.9e-14  Score=110.63  Aligned_cols=146  Identities=36%  Similarity=0.643  Sum_probs=104.7

Q ss_pred             hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      .+..+.+...+|.|.+.++.|.+... ..+......+...++.+++++++||+|||+.++.+.++.+++.+++.......
T Consensus       282 ~~~~~~~~~~~~~p~i~~~~g~~~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~  360 (479)
T PRK10077        282 QQFVGINVVLYYAPEIFKTLGASTDI-ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ  360 (479)
T ss_pred             HHHhChhHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC
Confidence            44555666778889998888988776 66677777888899999999999999999999999988888776655432111


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh-------------------------------
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG-------------------------------  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~-------------------------------  133 (177)
                      ..       .........++..++...+.+..+.+..|.+|++.|+++.                               
T Consensus       361 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~  433 (479)
T PRK10077        361 AP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF  433 (479)
T ss_pred             cc-------cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence            10       1122233344444444445566779999999999999887                               


Q ss_pred             ----------------eeeeeEEeecCCCCCHHHHHHHHhh
Q 045175          134 ----------------VVFVILFVPETQGLTFLEVEHMWKE  158 (177)
Q Consensus       134 ----------------~~~~~~~~pet~~~~~~~~~~~~~~  158 (177)
                                      .++.+++.||+++++.||+++.+++
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  474 (479)
T PRK10077        434 HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP  474 (479)
T ss_pred             cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence                            2233456799999999888776644

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.46  E-value=1.7e-13  Score=108.47  Aligned_cols=117  Identities=18%  Similarity=0.221  Sum_probs=73.9

Q ss_pred             chhHHHHhhHHHHHHcCCCCchH-----------HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHH
Q 045175            9 GINTVMYYNPTIVQMASFQSNQL-----------ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLL   77 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~-----------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   77 (177)
                      ..+....|.|+++++.|++....           ......+..++.+++.+++++++||+|||+.++.+..+.+++.++.
T Consensus       303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l  382 (502)
T TIGR00887       303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL  382 (502)
T ss_pred             HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence            44556667889888888764320           0112333445567788999999999999999888887777666555


Q ss_pred             HHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           78 SWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ........        ..............++.+..+..|.+.+|++|++.|+++.
T Consensus       383 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~  430 (502)
T TIGR00887       383 GFAYNHLS--------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAH  430 (502)
T ss_pred             HHHHHhcc--------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHH
Confidence            44321100        0111122222223334556677778999999999999776

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.33  E-value=2.1e-12  Score=98.16  Aligned_cols=119  Identities=16%  Similarity=0.034  Sum_probs=88.8

Q ss_pred             chhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175            2 QAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF   81 (177)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~   81 (177)
                      .++.++...+..+...|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.+..+.++.+++.+......
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   80 (399)
T TIGR00893         2 VTVINYLDRANLSFAAPMLQEDLGLSAAQ-YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG   80 (399)
T ss_pred             eehHHHHHHHhhhHhHHHHHHhhCCChhh-HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence            34556666677778888888999999888 88888889999999999999999999999999998888777776655432


Q ss_pred             HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                                 ......+...+.+.+.+.. .+....+..|.+|++.|++..
T Consensus        81 -----------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~  120 (399)
T TIGR00893        81 -----------AYVSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAV  120 (399)
T ss_pred             -----------CHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHH
Confidence                       1233344444444444433 344448999999999998776

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.31  E-value=1.8e-12  Score=98.96  Aligned_cols=142  Identities=18%  Similarity=0.226  Sum_probs=99.4

Q ss_pred             hhHHHHhhHHHHHHcCCCCchH--------HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175           10 INTVMYYNPTIVQMASFQSNQL--------ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF   81 (177)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~   81 (177)
                      .|....+...+++..|+.+...        +-.-..+..+..++|..+...++|++|||+..+.+.+++.++.+.++...
T Consensus       320 fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y  399 (538)
T KOG0252|consen  320 FYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPY  399 (538)
T ss_pred             hhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCc
Confidence            3555556666777666533321        12223333444456899999999999999999999999988887665533


Q ss_pred             HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh----------------------------
Q 045175           82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG----------------------------  133 (177)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~----------------------------  133 (177)
                      .... +      .....++..+.++....+.+.....+.+|.||++.|+++-                            
T Consensus       400 ~~~~-~------~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~  472 (538)
T KOG0252|consen  400 NQLE-N------TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPP  472 (538)
T ss_pred             cccc-c------cCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCc
Confidence            2111 1      2234455555666677788888789999999999999986                            


Q ss_pred             -----------------eeeeeEEeecCCCCCHHHHHHHHhh
Q 045175          134 -----------------VVFVILFVPETQGLTFLEVEHMWKE  158 (177)
Q Consensus       134 -----------------~~~~~~~~pet~~~~~~~~~~~~~~  158 (177)
                                       +.+..+++|||+++++||+++....
T Consensus       473 ~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~~~  514 (538)
T KOG0252|consen  473 NIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEEES  514 (538)
T ss_pred             cccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChhhc
Confidence                             6677888999999999998654443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.30  E-value=5e-12  Score=95.78  Aligned_cols=118  Identities=12%  Similarity=0.026  Sum_probs=87.2

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~   82 (177)
                      ++.++..........|.+.+++|.+..+ ..+..+...++..++.++.|+++||+|||+.++.+.++..++.++..... 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-   81 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGLSKTD-LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-   81 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCCCHhH-HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-
Confidence            3445555666777788888889999888 88888889999999999999999999999999999888888776665532 


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                                .....++...+.+.+.+. ..+..+++..|.+|++.|+...
T Consensus        82 ----------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~  121 (379)
T TIGR00881        82 ----------SLWVMAALWALNGIFQGM-GWPPCGRTVTKWFSRSERGTWV  121 (379)
T ss_pred             ----------hHHHHHHHHHHHHhhccc-cCCchHHHHHHhcCHhhheeeE
Confidence                      122333333343333333 3444558999999999998765

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.25  E-value=2.4e-11  Score=94.65  Aligned_cols=125  Identities=39%  Similarity=0.646  Sum_probs=86.1

Q ss_pred             hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175            7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS   86 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (177)
                      ..+.+...++.|.+.++.|.+..+ .........++..++.+++++++||+|||+.+..+.++.+++.+.+.........
T Consensus       297 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (481)
T TIGR00879       297 FTGINAIMYYSPTIFENAGVSTDH-AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT  375 (481)
T ss_pred             HhCCeehHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            344456677888888888998866 7778888888899999999999999999999988877777766555432211111


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .. ........+....++...++.+..+..+.+..|.+|++.|+++.
T Consensus       376 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  421 (481)
T TIGR00879       376 GS-SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGI  421 (481)
T ss_pred             Cc-ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHH
Confidence            00 00012223333444445555566677768889999999998876

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.25  E-value=3.5e-12  Score=104.56  Aligned_cols=89  Identities=18%  Similarity=0.172  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (177)
                      .....+..++.++|.+++++++||+|||++++.+.++.+++.++++...         .  ....+++.+++++..+.. 
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~---------s--~~~ll~~~~l~g~~~~~~-  665 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN---------S--ESAMIALLCLFGGLSIAA-  665 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc---------c--HHHHHHHHHHHHHHHHHH-
Confidence            3445566788899999999999999999999998888888876655421         0  222333333434333333 


Q ss_pred             ccccceeeccccccccccchh
Q 045175          113 GPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       113 ~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+..+++++|++|++.|+++.
T Consensus       666 ~~~~~a~~aEl~Pt~~Rgta~  686 (742)
T TIGR01299       666 WNALDVLTVELYPSDKRATAF  686 (742)
T ss_pred             HHHHHHHHHHHcCHHHHHHHH
Confidence            344558999999999999887

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.22  E-value=1.4e-11  Score=97.40  Aligned_cols=117  Identities=12%  Similarity=0.140  Sum_probs=73.6

Q ss_pred             hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175            7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS   85 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~   85 (177)
                      ...++....|.|.++ +..|++... .........++..++.++.|+++||+|||+.++.+.++..+..+......  ..
T Consensus       263 ~~~~~~~~~~~p~~l~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~  339 (490)
T PRK10642        263 NVTYYMLLTYMPSYLSHNLHYSEDH-GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--NS  339 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--hC
Confidence            345677778899988 456887766 66666667788889999999999999999988776654333322211111  11


Q ss_pred             CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..      .....+...+.+...+.+.+... .+..|++|++.|+++.
T Consensus       340 ~~------~~~~~~~~~~~g~~~~~~~g~~~-~~~~~~~p~~~Rg~~~  380 (490)
T PRK10642        340 NV------IGLIFAGLLMLAVILNCFTGVMA-STLPAMFPTHIRYSAL  380 (490)
T ss_pred             CC------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCccchHHH
Confidence            00      11222223333333333334444 6788999999999765

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.19  E-value=6.9e-11  Score=88.40  Aligned_cols=90  Identities=21%  Similarity=0.091  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      -+....+..+...+|.++.+++.||+|||+.|....++++++.+......           ..+...+..+..-.+..++
T Consensus       383 dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----------~rn~~tvllf~arafisg~  451 (528)
T KOG0253|consen  383 DYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----------TRNAYTVLLFTARAFISGA  451 (528)
T ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----------CcchhHHHHHHHHHHHhch
Confidence            34556667788899999999999999999999999999888887655432           1223344444444555556


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ++..+ +|..|++|+..|+++.
T Consensus       452 fqvaY-vYtPEVyPTavRatgv  472 (528)
T KOG0253|consen  452 FQVAY-VYTPEVYPTAVRATGV  472 (528)
T ss_pred             heEEE-EecCcccchhhhhcch
Confidence            66555 9999999999999987

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.18  E-value=1.8e-11  Score=93.71  Aligned_cols=114  Identities=12%  Similarity=-0.011  Sum_probs=82.0

Q ss_pred             hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175            7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS   86 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (177)
                      ....+......|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++.+++.++.....     
T Consensus        25 ~~~~~~~~~~~~~l~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-----   98 (405)
T TIGR00891        25 AFDFFLVALVLAEVAGEFGLTTVD-AASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP-----   98 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            334455566678878889999888 78888888999999999999999999999999988888777766554421     


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                            .....++...+.+.+.+...... .++..|.+|++.|+...
T Consensus        99 ------~~~~l~~~~~l~G~~~~~~~~~~-~~~i~~~~~~~~~~~~~  138 (405)
T TIGR00891        99 ------GYITMFIARLVIGIGMGGEYGSS-AAYVIESWPKHLRNKAS  138 (405)
T ss_pred             ------cHHHHHHHHHHHHhhhhhhhHHH-HHHHHHhCChhhhhHHH
Confidence                  12233333444444433333333 37899999999998776

>TIGR00898 2A0119 cation transport protein

Probab=99.14  E-value=2.2e-11  Score=96.38  Aligned_cols=106  Identities=24%  Similarity=0.249  Sum_probs=76.8

Q ss_pred             HhhHHHHHHcCCC---CchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175           15 YYNPTIVQMASFQ---SNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE   91 (177)
Q Consensus        15 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (177)
                      .+.|.+.+++|++   ..+ ..+..++..++.+++.++.|+++||+|||++++.+.++..++.++.+...          
T Consensus       110 ~~~~~i~~e~~l~c~~~~~-~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~----------  178 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWK-VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP----------  178 (505)
T ss_pred             cccccEEEEecceechHHH-HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc----------
Confidence            3456666778886   555 77888889999999999999999999999999998888887776654421          


Q ss_pred             hHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           92 VYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        +...++..+++.+....+..+..+++..|.+|++.|+...
T Consensus       179 --~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~  218 (505)
T TIGR00898       179 --NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVG  218 (505)
T ss_pred             --cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHH
Confidence              2223333333333333343555558999999999998765

>TIGR00895 2A0115 benzoate transport

Probab=99.14  E-value=6e-11  Score=90.52  Aligned_cols=111  Identities=21%  Similarity=0.049  Sum_probs=79.6

Q ss_pred             hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175           10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS   89 (177)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
                      .....++.|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.+..+.++..++.++.....        
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------  103 (398)
T TIGR00895        33 LAAMGFAAPAISAEWGLDPVQ-LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT--------  103 (398)
T ss_pred             HHHHHhhHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc--------
Confidence            345566678888889998877 77788888888999999999999999999999988887777765544321        


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                         .....++...+.+.+.+.. .+...++..|.+|++.|++..
T Consensus       104 ---~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~  143 (398)
T TIGR00895       104 ---NVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAV  143 (398)
T ss_pred             ---chHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhH
Confidence               1222333333434333333 344448999999999998765

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.14  E-value=6.4e-11  Score=92.37  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccccc
Q 045175           35 LSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGP  114 (177)
Q Consensus        35 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (177)
                      ...+..+++++|+++.++++||+|||..++.+.++..++.++........        ..-..++...+.+...+...+.
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~--------~~e~li~GR~i~Gl~~gl~~~~  136 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP--------SFEMLILGRLIVGLACGLSTGL  136 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHhHHHHHH
Confidence            45557788899999999999999999999988888888877766654322        2334566666666677777777


Q ss_pred             ccceeeccccccccccchh
Q 045175          115 VPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       115 ~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+ .|+.|+.|.+.||...
T Consensus       137 ~p-myl~E~sP~~~RG~~g  154 (485)
T KOG0569|consen  137 VP-MYLTEISPKNLRGALG  154 (485)
T ss_pred             HH-HHHhhcChhhhccHHH
Confidence            78 8999999999999876

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.11  E-value=1.1e-10  Score=91.69  Aligned_cols=107  Identities=15%  Similarity=0.009  Sum_probs=70.8

Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHH-HHHHHH
Q 045175           25 SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIA-VIGLAL  103 (177)
Q Consensus        25 g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  103 (177)
                      +.+..+ ..+..+...++..++++++|+++||+|||++++.+.++.+++.+..+...........+....... ++.+.+
T Consensus        51 ~~~~~~-~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l  129 (479)
T PRK10077         51 SAANSL-LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII  129 (479)
T ss_pred             cCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence            666666 778888899999999999999999999999999998888777665543211100000001112223 333444


Q ss_pred             Hhhhhccccccccceeeccccccccccchh
Q 045175          104 YITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+.+.+. ..+...++++|.+|++.|+...
T Consensus       130 ~G~~~g~-~~~~~~~~i~e~~~~~~rg~~~  158 (479)
T PRK10077        130 GGIGVGL-ASMLSPMYIAEIAPAHIRGKLV  158 (479)
T ss_pred             HhhhHhH-HhhHHHHHHHhhCChhhhhHHH
Confidence            4444443 3444448999999999998866

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.11  E-value=1.7e-10  Score=86.47  Aligned_cols=89  Identities=22%  Similarity=0.290  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ++.+.+.+.+++.+.++.+|.++||+|||++++.+.+..++..++.+...            ++..++..++.++.+...
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~------------~F~afv~aR~l~Gi~kgn  137 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR------------NFAAFVLARFLGGIFKGN  137 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhhccCc
Confidence            67788889999999999999999999999999999999999887776642            444566557777777777


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+... ++++|+.+++.|+.++
T Consensus       138 l~v~r-AiisdV~sek~r~l~m  158 (451)
T KOG2615|consen  138 LSVIR-AIISDVVSEKYRPLGM  158 (451)
T ss_pred             hHHHH-HHHHhhcChhhcccee
Confidence            77778 9999999999999887

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.10  E-value=1.2e-10  Score=95.73  Aligned_cols=109  Identities=18%  Similarity=0.047  Sum_probs=81.2

Q ss_pred             HHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175           12 TVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE   91 (177)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (177)
                      .+....|.+.+++|++..+ ..++.++..++.++|.+++|+++||+|||++++++.++.+++.++..+..          
T Consensus       185 ~is~ilp~i~~~~gls~~~-~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~----------  253 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSG-KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ----------  253 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            3455677777888998877 77888888999999999999999999999999998888777776655431          


Q ss_pred             hHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           92 VYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                       .....+++..+.+.+.+.. .+..++++.|.+|++.|+...
T Consensus       254 -s~~~llv~R~l~G~g~g~~-~p~~~~~isE~~p~~~Rg~~~  293 (742)
T TIGR01299       254 -GYGFFLFCRLLSGFGIGGA-IPIVFSYFAEFLAQEKRGEHL  293 (742)
T ss_pred             -hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHH
Confidence             1233344444444444433 455559999999999998754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.10  E-value=2.2e-10  Score=91.24  Aligned_cols=90  Identities=27%  Similarity=0.253  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      .....++..++.++|++++|+++||+|||++++.+.++..++.+..+...            ++...+..+++.+.+..+
T Consensus       120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~------------~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP------------NYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC------------cHHHHHHHHHHHHhhccc
Confidence            67788888999999999999999999999999999999999987766643            445555566666666666


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .....+.+..|+++++.|+.+.
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~  209 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLAL  209 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHH
Confidence            6667779999999999999876

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.10  E-value=8.2e-11  Score=89.69  Aligned_cols=112  Identities=15%  Similarity=0.035  Sum_probs=79.6

Q ss_pred             chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175            9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      +........|.+.+++|.++++ ..+......++..++.++.|+++||+|||+.+..+.++.+++.+......       
T Consensus        20 ~~~~~~~~~p~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-------   91 (385)
T TIGR00710        20 GIDMYLPAFPEIAADLSTPASI-VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN-------   91 (385)
T ss_pred             HHHHhcccHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-------
Confidence            3344445567777889999887 88888888999999999999999999999999988888777776554421       


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                          ......+...+.+.+.+.. .+....+..|.+|++.|++..
T Consensus        92 ----~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~  131 (385)
T TIGR00710        92 ----NIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIY  131 (385)
T ss_pred             ----cHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHH
Confidence                1222333333333333333 333448899999999998775

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.09  E-value=3.1e-10  Score=89.20  Aligned_cols=112  Identities=17%  Similarity=0.096  Sum_probs=80.0

Q ss_pred             HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175           14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (177)
                      ....|.+.+++|.+..+ ..++.+...++..++.++.|+++||+|||+++..+.++.++..+..+........      .
T Consensus        49 ~~~~~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~------~  121 (467)
T PRK09556         49 KAAQNDMISTYGLSTTE-LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSV------S  121 (467)
T ss_pred             hhhhHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccc------h
Confidence            34467888899999888 8888888899999999999999999999999988888777776655543211111      1


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ....++.+.+.+.+.+.+. +....++.|.+|+++|++..
T Consensus       122 ~~~l~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~rg~a~  160 (467)
T PRK09556        122 LGLMIALWALSGFFQSTGG-PCSYSTITRWTPRRKRGRFL  160 (467)
T ss_pred             HHHHHHHHHHHHHHHhccc-hHHHHHHHHHcCccceeeeE
Confidence            2233333444444434443 34448999999999999886

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.08  E-value=2.3e-10  Score=86.34  Aligned_cols=118  Identities=16%  Similarity=0.088  Sum_probs=81.3

Q ss_pred             hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175            8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA   87 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (177)
                      .+........|.+..+.+.+..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.++.......... 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~s~~~-~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-   90 (365)
T TIGR00900        13 IGTAITQVALPLYVLAGTGSASV-LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGL-   90 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence            34445556667777778888777 7888888889999999999999999999999998888777766555443211110 


Q ss_pred             CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                           ......+...+.+...+. ..+...++..|.+|+++|++..
T Consensus        91 -----~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~  130 (365)
T TIGR00900        91 -----NIWQVYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQAN  130 (365)
T ss_pred             -----cHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHH
Confidence                 122333333443433333 3344448999999999998775

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.06  E-value=1.6e-10  Score=89.54  Aligned_cols=116  Identities=9%  Similarity=-0.081  Sum_probs=84.1

Q ss_pred             hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      .++.......+..|.+.+++|.+..+ ..+..+...++..++.++.|+++||+|||+.+..+.++..++.++.....   
T Consensus        19 ~~~~d~~~~~~~~~~l~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---   94 (412)
T TIGR02332        19 FSFLDRINIGFAGLTMGKDLGLSATM-FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT---   94 (412)
T ss_pred             HHHhhhhhHHHHHHhhHhhcCCCHHH-HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc---
Confidence            34444455566677777889999888 88888888999999999999999999999999988888888776655431   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                              ......+...+.+.+.+. ..+....+..|.+|++.|+...
T Consensus        95 --------~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~rg~~~  134 (412)
T TIGR02332        95 --------GPESLYLLRILVGIAEAG-FLPGILLYLTFWFPAYFRARAN  134 (412)
T ss_pred             --------CHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHcCHHHHHHHH
Confidence                    122233334444444333 3344447889999999999876

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.06  E-value=9.1e-11  Score=89.78  Aligned_cols=103  Identities=10%  Similarity=0.113  Sum_probs=79.8

Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 045175           18 PTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIA   97 (177)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (177)
                      +.+-+.+|.+++. ...++....+..++++++.|+++||+.||.++.++..+..++.++.++..            .++.
T Consensus        57 ~~v~~~fni~~s~-~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~------------~Fwq  123 (493)
T KOG1330|consen   57 KEVQTYFNISDSE-LGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN------------HFWQ  123 (493)
T ss_pred             HHHHHhcCCCchh-ccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH------------HHHH
Confidence            3334446888877 88899999999999999999999999999999999999998888777653            3344


Q ss_pred             HHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           98 VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +++.+.+.+..-..+.++...+++|.||...|++..
T Consensus       124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~  159 (493)
T KOG1330|consen  124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVL  159 (493)
T ss_pred             HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHH
Confidence            444444333333455666669999999999999887

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.06  E-value=4e-10  Score=87.36  Aligned_cols=112  Identities=16%  Similarity=0.072  Sum_probs=82.0

Q ss_pred             chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175            9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      ......+..|.+.+++|.++.+ ..+......++..++.++.|+++||+|||+.++.+.++.+++.+......       
T Consensus        33 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------  104 (426)
T PRK12307         33 DFMLIFYIMYLIKADLGLTDME-GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS-------  104 (426)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh-------
Confidence            3344555667777889999887 78888888999999999999999999999999999998888876655532       


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                          .....++...+.+.+.+.. .+....+..|.+|++.|++..
T Consensus       105 ----~~~~l~~~r~l~G~g~g~~-~~~~~~~~~~~~~~~~r~~~~  144 (426)
T PRK12307        105 ----GVIMLTLSRFIVGMGMAGE-YACASTYAVESWPKHLKSKAS  144 (426)
T ss_pred             ----HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhCCHhHhhHhh
Confidence                1223344344444333333 333337899999999998765

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.03  E-value=2.5e-10  Score=89.76  Aligned_cols=116  Identities=18%  Similarity=0.120  Sum_probs=85.2

Q ss_pred             hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      .+...........|.+.+++|.+.++ ..+......++..++.++.|+++||+|||+.++.+.++..++.+......   
T Consensus        13 ~~~~~~~~~~~~~p~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---   88 (485)
T TIGR00711        13 MAVLDSTIVNVAIPTIAGDLGSSLSQ-VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP---   88 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhh-hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC---
Confidence            33444566677789988999998887 88888889999999999999999999999999998888887776554321   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                              .....++. +...+.......+..+++..|.+|++.|+++.
T Consensus        89 --------~~~~l~~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~  128 (485)
T TIGR00711        89 --------NLELMIIF-RVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAM  128 (485)
T ss_pred             --------CHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHH
Confidence                    12233333 33333333334455558999999999998876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.03  E-value=1.8e-11  Score=95.49  Aligned_cols=93  Identities=26%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ..+......++..+|++++|+++||+|||+.++.+.++..++.++.......        .......+.+.+.+.+.+..
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~R~~~G~~~g~~  119 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY--------NNFWMLLIGRFLIGFGIGGA  119 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc--------cccccccccccccccccccc
Confidence            4567777888999999999999999999999999999888888666553211        01233444445555554544


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ....+ .+..|..|++.|+...
T Consensus       120 ~~~~~-~~~~E~~~~~~R~~~~  140 (451)
T PF00083_consen  120 YVVSP-IYISEIAPPKHRGFLS  140 (451)
T ss_pred             ccccc-cccccccccccccccc
Confidence            44555 9999999999998665

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.02  E-value=7.2e-10  Score=86.39  Aligned_cols=110  Identities=15%  Similarity=0.071  Sum_probs=81.0

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      +....+.|.+.+++|++..+ ..+......++..++.++.|+++||+|||+++.++.++.+++.++.....         
T Consensus        40 ~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------  109 (434)
T PRK11663         40 KSFNAAMPEMLADLGLSRSD-IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS---------  109 (434)
T ss_pred             hhHHHhhHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh---------
Confidence            35567788888889999887 77888888999999999999999999999999998888888876655431         


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        ......+...+.+...+....+.. .+..|.+|+++|++..
T Consensus       110 --~~~~l~~~~~l~g~~~g~~~~~~~-~~~~~~~~~~~rg~~~  149 (434)
T PRK11663        110 --SLWAFALLWVLNAFFQGWGWPVCA-KLLTAWYSRTERGGWW  149 (434)
T ss_pred             --HHHHHHHHHHHHHHHHHccchHHH-HHHHHhCCHHHHHHHH
Confidence              122223333333333343333334 8899999999999875

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.01  E-value=6.1e-10  Score=87.85  Aligned_cols=114  Identities=10%  Similarity=-0.055  Sum_probs=78.3

Q ss_pred             hhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175            6 QFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS   85 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~   85 (177)
                      .+...+....+.|.+.+++|++..+ ..+......++..++.++.|+++||+|||+++..+.++.+++.++.+...    
T Consensus        48 ~~~~~~~~~~~~~~l~~~~gls~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----  122 (476)
T PLN00028         48 CFVSTFAAAPLLPIIRDNLNLTKSD-IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS----  122 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc----
Confidence            3344455666777888899998887 66777777888889999999999999999998888777777665544421    


Q ss_pred             CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                             .....++...+.+.+.+ ...+.. .+.+|.+|++.|+.+.
T Consensus       123 -------s~~~l~~~r~l~G~~~~-~~~~~~-~~i~~~~~~~~rg~a~  161 (476)
T PLN00028        123 -------SATGFIAVRFFIGFSLA-TFVSCQ-YWMSTMFNGKIVGTAN  161 (476)
T ss_pred             -------CHHHHHHHHHHHHHHHH-hhHHHH-HHHHHhcChhheeHHH
Confidence                   02222233333333322 223333 5788999999999875

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.00  E-value=5.8e-10  Score=85.62  Aligned_cols=118  Identities=17%  Similarity=0.067  Sum_probs=84.1

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~   82 (177)
                      .+.+..+........|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.+...... 
T Consensus        12 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~-   89 (392)
T PRK10473         12 VLLYPAGIDMYLVGLPRIAADLNASEAQ-LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE-   89 (392)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC-
Confidence            3455566667777889988999998887 77788888888899999999999999999999988887777765544321 


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                                ......+...+.+.+.+ ...+..+.+..|.+|++.|++..
T Consensus        90 ----------~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~  129 (392)
T PRK10473         90 ----------TSSLFLAGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVL  129 (392)
T ss_pred             ----------cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHH
Confidence                      02222333333333222 22334458899999999998775

>PRK03545 putative arabinose transporter; Provisional

Probab=99.00  E-value=7.1e-10  Score=85.17  Aligned_cols=108  Identities=17%  Similarity=0.015  Sum_probs=77.8

Q ss_pred             HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175           13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV   92 (177)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (177)
                      .....|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+++..+.++..++.+......           
T Consensus        28 ~~~~~~~l~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------   95 (390)
T PRK03545         28 PVGLLSDIAQSFHMQTAQ-VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW-----------   95 (390)
T ss_pred             HHcchHHHHhHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            334467888899999888 78888888888889999999999999999999999888888776655431           


Q ss_pred             HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .....++.....+... ....+...++..|.+|+++|+++.
T Consensus        96 ~~~~l~~~r~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~  135 (390)
T PRK03545         96 NFTVLLISRIGIAFAH-AIFWSITASLAIRVAPAGKKAQAL  135 (390)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCChhhhhhHH
Confidence            1223333333333222 223344447889999999999876

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.99  E-value=1e-09  Score=82.15  Aligned_cols=116  Identities=21%  Similarity=0.205  Sum_probs=85.6

Q ss_pred             hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      ....+........|.+.++.|.+..+ ..+......+...++.++.|+++||+|||+.+..+.++..++.+......   
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~---   85 (352)
T cd06174          10 LSGLDRGLLSPALPLLAEDLGLSASQ-AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS---   85 (352)
T ss_pred             HHHHhhhhhHhhHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc---
Confidence            34445566677788888888988887 88888888999999999999999999999999998888888876655431   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                              ......+...+.+.+.+....... .+..|.+|+++|++..
T Consensus        86 --------~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~  125 (352)
T cd06174          86 --------SLWLLLVGRFLLGLGGGALYPAAA-ALIAEWFPPKERGRAL  125 (352)
T ss_pred             --------cHHHHHHHHHHHHcccccccHhHH-HHHHHhCCccchhhhh
Confidence                    122333334444444443333444 8999999999998876

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.99  E-value=1.1e-09  Score=83.03  Aligned_cols=117  Identities=16%  Similarity=0.038  Sum_probs=84.1

Q ss_pred             hhhhhchhHHHHhhHH-HHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPT-IVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~   82 (177)
                      +..+...+....+.|. +.+++|++..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.++......
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~   89 (366)
T TIGR00886        11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQ-LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ   89 (366)
T ss_pred             HHHHHHHHHhHHhhhHHHHHHhCCCHHH-hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445555667777885 55889999988 888888889999999999999999999999999998888888766554210


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                                .....++...+.+.+ +....+. ..+..|.+|+++|+...
T Consensus        90 ----------~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~r~~~~  128 (366)
T TIGR00886        90 ----------SYSVLLLLRLFIGIA-GGSFASC-MPWISFFFPKKIQGTAL  128 (366)
T ss_pred             ----------hHHHHHHHHHHHHHh-chhhHhH-HHHHHHhcCHhhhhHHH
Confidence                      122233333333333 3333333 47889999999998775

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.98  E-value=2e-09  Score=82.85  Aligned_cols=122  Identities=16%  Similarity=-0.005  Sum_probs=79.2

Q ss_pred             hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175            7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS   85 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~   85 (177)
                      ..+........|.+. +++|.+..+ ..+......+...++.++.|+++||+|||++++.+.++.+++.+..........
T Consensus        28 ~~~~~~~~~~l~~~i~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~  106 (399)
T PRK05122         28 YLTIGLPLAVLPGYVHDQLGFSAFL-AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAA  106 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHH-HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhc
Confidence            334444556667655 678988887 888888889999999999999999999999999988877766554433221110


Q ss_pred             CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..   .......++...+.+.+.+. ..+....+..|.+|++.|+++.
T Consensus       107 ~~---~~~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~  150 (399)
T PRK05122        107 WP---VLSLLLLLLGRLLLGIGESL-AGTGSILWGIGRVGALHTGRVI  150 (399)
T ss_pred             cc---hhHHHHHHHHHHHHHhhHHh-hcchHHHHHHhhcChhhhccch
Confidence            00   00111223333343333332 2333336778999999998775

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.98  E-value=5e-10  Score=85.86  Aligned_cols=110  Identities=13%  Similarity=-0.037  Sum_probs=78.9

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      .......|.+.+++|.+..+ ..+......++..++.+++|+++||+|||+++..+..+.++..++.....         
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~---------   89 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPA-AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS---------   89 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHH-HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC---------
Confidence            45556778888889998887 78888888999999999999999999999999999888888776655421         


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        ......+...+.+.+.+... +....+..|.+|++.|+...
T Consensus        90 --~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~  129 (382)
T PRK10091         90 --SYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAV  129 (382)
T ss_pred             --cHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHH
Confidence              12333333444333333222 23336788899988887544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.96  E-value=1.7e-09  Score=83.34  Aligned_cols=106  Identities=11%  Similarity=-0.043  Sum_probs=77.6

Q ss_pred             HhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 045175           15 YYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYG   94 (177)
Q Consensus        15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (177)
                      ...|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++.+++.++.....           ..
T Consensus        41 ~~l~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----------~~  108 (394)
T PRK10213         41 SLLTPMAQDLGISEGV-AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN-----------SF  108 (394)
T ss_pred             hhHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC-----------hH
Confidence            3467777889999887 77777778888899999999999999999999999999888776654421           12


Q ss_pred             HHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           95 WIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...++...+.+...+. ..+....+..|.+|++.|+.+.
T Consensus       109 ~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~  146 (394)
T PRK10213        109 SLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKAL  146 (394)
T ss_pred             HHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHH
Confidence            2333333343444333 3344448889999999998776

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.95  E-value=2.3e-10  Score=90.66  Aligned_cols=116  Identities=15%  Similarity=-0.012  Sum_probs=81.0

Q ss_pred             hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      ....-...+..-.|.+.+++|.+.++ ..|....+.++...+.+++|+++||+|||+.++.+.++..++.+.++...   
T Consensus        17 ~~~ld~tiv~~a~p~i~~~l~~s~~~-~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~---   92 (495)
T PRK14995         17 PVAIDATVLHVAAPTLSMTLGASGNE-LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP---   92 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC---
Confidence            33344455666689999999998887 88888888888899999999999999999999999998888887666531   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccc-ccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVY-REQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~  133 (177)
                              .....++...+.+.+.+ ...+.......+.+ |++.|+++.
T Consensus        93 --------~~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~  133 (495)
T PRK14995         93 --------TASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMAL  133 (495)
T ss_pred             --------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence                    13333444444443333 23333324455554 678888765

>PRK12382 putative transporter; Provisional

Probab=98.94  E-value=2.3e-09  Score=82.35  Aligned_cols=119  Identities=14%  Similarity=-0.036  Sum_probs=75.4

Q ss_pred             hhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175           10 INTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus        10 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      ........|.+. +++|.+..+ .........+...++.++.|+++||+|||+.++.+.+...++.+............ 
T Consensus        31 ~~~~~p~l~~~l~~~lg~s~~~-~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-  108 (392)
T PRK12382         31 VGLPLPVIPLFVHHDLGFGNTM-VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA-  108 (392)
T ss_pred             HHHHhhhhhHHHHHhcCCcHHH-HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch-
Confidence            334444555554 678999888 88888888999999999999999999999999988777665543322211111000 


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        .......++...+.+.+.+.. .+...++..|.+|+++|+++.
T Consensus       109 --~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~a~  150 (392)
T PRK12382        109 --PFKFALLVVGRLILGFGESQL-LTGALTWGLGLVGPKHSGKVM  150 (392)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCccccchhh
Confidence              011222333333333333322 233336778999999999876

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.94  E-value=1.6e-09  Score=82.59  Aligned_cols=111  Identities=15%  Similarity=-0.003  Sum_probs=80.7

Q ss_pred             hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175           10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS   89 (177)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
                      ........|.+.+++|.+..+ ..+......++..++.+++|+++||+|||+.+..+.++.+++.+......        
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--------   77 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGS-VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--------   77 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--------
Confidence            355567778888889998887 78888888899999999999999999999999998888888776655421        


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                         ......+...+.+.+.+ ...+...++..|.+|++.|++..
T Consensus        78 ---~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  117 (377)
T PRK11102         78 ---TIDQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMM  117 (377)
T ss_pred             ---cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHH
Confidence               12223333333333333 23333448899999999998775

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.94  E-value=1.1e-09  Score=83.42  Aligned_cols=108  Identities=19%  Similarity=0.096  Sum_probs=87.0

Q ss_pred             HHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175           12 TVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE   91 (177)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (177)
                      ...-.+|.+.+++|.+... +.+..+.+..+..+++++...+.||+.||++++....+.+++.++.+...          
T Consensus        31 v~~gLLp~iA~dl~vs~~~-aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp----------   99 (394)
T COG2814          31 VPVGLLPPIAADLGVSEGA-AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP----------   99 (394)
T ss_pred             HHHhchHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc----------
Confidence            3445578888999999998 88899999999999999999999999999999999999999998877753          


Q ss_pred             hHHHHH-HHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           92 VYGWIA-VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        92 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        ++.. ++.+.+.+...+..+. ...++..++.|+++|++++
T Consensus       100 --~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Ai  139 (394)
T COG2814         100 --SFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRAL  139 (394)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHH
Confidence              3344 4444444555554444 4449999999999999887

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.94  E-value=1.7e-09  Score=84.21  Aligned_cols=122  Identities=14%  Similarity=-0.016  Sum_probs=73.7

Q ss_pred             hchhHHHHhhHHHHHHcC---CCCchH--HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175            8 TGINTVMYYNPTIVQMAS---FQSNQL--ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g---~~~~~~--~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~   82 (177)
                      .....+.+..|.+.++++   .+..+.  .........++..+|++++|+++||+|||+.+..+.++.+++.+..+....
T Consensus        36 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~  115 (432)
T PRK10406         36 FDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPG  115 (432)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCC
Confidence            334445555676777764   333220  122334445666799999999999999999999999998888876654320


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ....+   .......++.+.+.+.+.+.. .+...+++.|.+|++.|+...
T Consensus       116 ~~~~~---~~~~~~l~~~R~l~G~g~g~~-~~~~~~~i~e~~p~~~rg~~~  162 (432)
T PRK10406        116 YETIG---TWAPALLLLARLFQGLSVGGE-YGTSATYMSEVAVEGRKGFYA  162 (432)
T ss_pred             chhHH---HHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHhCCCCcccHHH
Confidence            00000   001122333344444443433 344448999999999999754

>PRK10054 putative transporter; Provisional

Probab=98.93  E-value=2.3e-09  Score=82.64  Aligned_cols=116  Identities=11%  Similarity=0.008  Sum_probs=79.6

Q ss_pred             hhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175            5 QQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFIS   83 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~   83 (177)
                      ....+.+....+.|.++ +++|.+..+ ..+..+...++..++.++.|+++||+|||++++.+.+..+++.+......  
T Consensus        18 ~~~~g~~~~~~~l~~~l~~~~g~s~~~-~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~--   94 (395)
T PRK10054         18 LLTIGRGATLPFMTIYLSRQYSLSVDL-IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN--   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh--
Confidence            34455566677777777 668999888 77777777888899999999999999999999888877776665544421  


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                               .....++...+.+...+ ...+..+.+..|.+|++.|+++.
T Consensus        95 ---------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  134 (395)
T PRK10054         95 ---------NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIF  134 (395)
T ss_pred             ---------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHH
Confidence                     12222222333333222 22333447889999999888874

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.93  E-value=1.9e-09  Score=83.06  Aligned_cols=110  Identities=17%  Similarity=0.051  Sum_probs=78.9

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      +......|.+.+++|.+.++ ..+......++..++.++.|+++||+|||+.+..+.++..++.+......         
T Consensus        32 ~~~~~~~~~~~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------  101 (406)
T PRK11551         32 QSAGVAAPRMAQEFGLDVAQ-MGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW---------  101 (406)
T ss_pred             HHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---------
Confidence            34455567788889998887 88888888999999999999999999999999988877776665444321         


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        .....++...+.+.+.+.. .+...++..|.+|++.|+++.
T Consensus       102 --~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~  141 (406)
T PRK11551        102 --DFPSLLVARLLTGVGLGGA-LPNLIALTSEAVGPRLRGTAV  141 (406)
T ss_pred             --cHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHcCHHHHHHHH
Confidence              1223334344444433333 334448999999999998865

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.93  E-value=1.5e-09  Score=82.96  Aligned_cols=111  Identities=12%  Similarity=-0.075  Sum_probs=73.1

Q ss_pred             chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175            9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      +-.......|.+.+++|.+..+ ..+..+...++..++.+..|+++||+|||++++........+.+. ...        
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~-~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~-~~~--------   75 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEE-LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGR-LLD--------   75 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH-HHH--------
Confidence            3456667788888999999887 778888888999999999999999999998766544433332211 110        


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        .......++.+.+.+.+.+ .. ...+...+|.+|+++|++..
T Consensus        76 --~~~~~~l~~~R~l~G~g~~-~~-~~~~~~~~~~~~~~~r~~a~  116 (368)
T TIGR00903        76 --PFNYEWLLACQLLAALGQP-FL-LNAFAPAASQIREERRDLVI  116 (368)
T ss_pred             --hccHHHHHHHHHHHHhHhH-HH-HHHHHHHHHHcCHHHHHHHH
Confidence              0012233433444333333 22 22335668999999999887

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.93  E-value=2.4e-09  Score=84.75  Aligned_cols=119  Identities=10%  Similarity=-0.016  Sum_probs=73.3

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHH-----HHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALL-----LSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS   85 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~   85 (177)
                      ..+.+..|.+.++++.+.++...+     ...+..++..+|+++.|+++||+|||+++..+.++.+++.++.+.......
T Consensus        33 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~  112 (490)
T PRK10642         33 GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYAT  112 (490)
T ss_pred             HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            344455566666665433221111     134556778899999999999999999999999999998877766421000


Q ss_pred             CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      -+   .......++...+.+.+.+....+.. +++.|.+|++.|+...
T Consensus       113 ~g---~~a~~~l~~~R~l~G~g~g~~~~~~~-~~~~e~~p~~~Rg~~~  156 (490)
T PRK10642        113 IG---IWAPILLLLCKMAQGFSVGGEYTGAS-IFVAEYSPDRKRGFMG  156 (490)
T ss_pred             HH---HHHHHHHHHHHHHHHhHhHhhHHHHH-HHHHHhCCCCCCcHHH
Confidence            00   00001133334444444444434444 8999999999998764

>PRK10504 putative transporter; Provisional

Probab=98.93  E-value=1.2e-09  Score=85.86  Aligned_cols=116  Identities=13%  Similarity=-0.034  Sum_probs=81.8

Q ss_pred             hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      .+....+....+.|.+.+++|.+..+ ..+......++..++.+++|+++||+|||++++.+..+..++.+......   
T Consensus        21 ~~~~~~~~~~~~~p~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~---   96 (471)
T PRK10504         21 MQSLDTTIVNTALPSMAQSLGESPLH-MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG---   96 (471)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC---
Confidence            34444566777889999999998877 67777777888889999999999999999999988777776665443311   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                              .....++...+.+.+.+. ..+...++..|.+|++.|+++.
T Consensus        97 --------~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~  136 (471)
T PRK10504         97 --------TLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAM  136 (471)
T ss_pred             --------CHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHH
Confidence                    122333434444443333 3344457889999999887765

>PRK03699 putative transporter; Provisional

Probab=98.92  E-value=2.5e-09  Score=82.29  Aligned_cols=110  Identities=10%  Similarity=0.009  Sum_probs=78.0

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      .......|.+.+++|++..+ ..+......++..++.++.|++.||+|||++++.+.++.+++.++.....         
T Consensus        24 ~~~g~~~~~i~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~---------   93 (394)
T PRK03699         24 IVTGMVMGPIAEYFNLPVSS-MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH---------   93 (394)
T ss_pred             HHHhhhhHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc---------
Confidence            34555578888889999887 77777778888999999999999999999999888887777766554421         


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        .....++...+.+...+...... ..+..|.+|++.|+...
T Consensus        94 --~~~~~~~~~~l~G~~~g~~~~~~-~~~i~~~~~~~~r~~~~  133 (394)
T PRK03699         94 --SLALFSIAMFVLGVVSGITMSIG-TFLITHVYEGKQRGSRL  133 (394)
T ss_pred             --hHHHHHHHHHHHHHhhHhhccch-hHHhhhhcccchHHHHH
Confidence              12223333344444333333333 37889999999888764

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.91  E-value=1.5e-09  Score=84.24  Aligned_cols=106  Identities=9%  Similarity=-0.107  Sum_probs=74.3

Q ss_pred             HhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 045175           15 YYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYG   94 (177)
Q Consensus        15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (177)
                      .-.|.+.+++|.+... ..+...+..++..++.+++|+++||+|||++++.+..+.+++.++.....           ..
T Consensus        37 p~l~~i~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----------~~  104 (413)
T PRK15403         37 PGIINVVRDFNADVSL-APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-----------SM  104 (413)
T ss_pred             cCHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-----------CH
Confidence            3345566788988887 77788888899999999999999999999999998888777776555421           12


Q ss_pred             HHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           95 WIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...++...+.+.+.+ ...+..+++..|.+|++.|++..
T Consensus       105 ~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~  142 (413)
T PRK15403        105 TQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLM  142 (413)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHH
Confidence            233333344333332 23344457888999998876653

>PRK15075 citrate-proton symporter; Provisional

Probab=98.91  E-value=2.7e-09  Score=83.17  Aligned_cols=126  Identities=17%  Similarity=0.136  Sum_probs=78.5

Q ss_pred             hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHH-----HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLA-----VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLS   78 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   78 (177)
                      +.++.-........|.+.++++.++.+........     ..+...++.++.|+++||+|||+.++.+..+..++.++.+
T Consensus        25 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~  104 (434)
T PRK15075         25 FLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIA  104 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence            44455556677888988888888766523322211     1233357889999999999999999999998888876665


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           79 WAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ........   ........++.+.+.+.+.+....... .+.+|.+|++.|++..
T Consensus       105 ~~~~~~~~---~~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~~p~~~rg~~~  155 (434)
T PRK15075        105 FVPGYATI---GLAAPLLVLLGRLLQGFSAGVELGGVS-VYLAEIATPGRKGFYT  155 (434)
T ss_pred             hCCcHHHH---HHHHHHHHHHHHHHhhccccccHHHHH-HHHHhhCCcccchHHH
Confidence            43100000   000011223334444444443333344 8999999999999876

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.90  E-value=1.1e-09  Score=82.27  Aligned_cols=116  Identities=21%  Similarity=0.195  Sum_probs=82.2

Q ss_pred             hhhhchhHHHHhhH-HHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175            5 QQFTGINTVMYYNP-TIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFIS   83 (177)
Q Consensus         5 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~   83 (177)
                      ....+........| .+.+++|.+..+ ..+......++..++.++.|+++||+|||++++.+.++.+++.+...+.   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---   82 (352)
T PF07690_consen    7 LSGFGFSIISPALPLYLAEELGLSPSQ-IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---   82 (352)
T ss_dssp             HHHHHHHHHHHHHH-HHHCCSTTTSHC-HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---
Confidence            33444455666667 566788999888 8888888899999999999999999999999999988888884443321   


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        .+      .+..++...+.+.+.+. ..+....+..|.+|+++|++..
T Consensus        83 --~~------~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~  123 (352)
T PF07690_consen   83 --SN------FWLLLIARFLLGIGSGF-FSPASNALIADWFPPEERGRAF  123 (352)
T ss_dssp             --CC------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCTCCHHHHH
T ss_pred             --hh------HHHHhhhcccccccccc-ccccccccccccchhhhhhhcc
Confidence              11      23334444444444333 3444448999999999998876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.89  E-value=2.5e-09  Score=84.55  Aligned_cols=112  Identities=15%  Similarity=0.050  Sum_probs=79.3

Q ss_pred             chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175            9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      .........|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.++.....       
T Consensus        35 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------  106 (496)
T PRK03893         35 DFVLITLVLTEVQGEFGLTTVQ-AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP-------  106 (496)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh-------
Confidence            3345555677877889999887 77778888888999999999999999999999988888777776655421       


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                          ......+...+.+.+.+ +..+....+..|.+|++.|+.+.
T Consensus       107 ----~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~  146 (496)
T PRK03893        107 ----GYWTLFIARLVIGMGMA-GEYGSSATYVIESWPKHLRNKAS  146 (496)
T ss_pred             ----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHH
Confidence                12223333333333333 23333347899999999998765

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.89  E-value=6.2e-09  Score=81.12  Aligned_cols=118  Identities=14%  Similarity=0.016  Sum_probs=69.8

Q ss_pred             hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175            7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS   85 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~   85 (177)
                      ..+.+....|.|.++ +..|.+..+ ......+..++..++.++.|+++||+|||+.++...++.++..+......  ..
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~-~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~  332 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANV-ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--QN  332 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--Hc
Confidence            344566778889888 557888766 55566666666788888999999999999987765554333322111111  11


Q ss_pred             CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..     .....+..........+. ..+..+.+.+|.+|++.|+++.
T Consensus       333 ~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~  374 (432)
T PRK10406        333 VS-----SPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGV  374 (432)
T ss_pred             CC-----cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhh
Confidence            00     011111111111111111 1223447889999999999987

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.89  E-value=3.5e-09  Score=80.20  Aligned_cols=110  Identities=13%  Similarity=0.058  Sum_probs=76.9

Q ss_pred             hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175           10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS   89 (177)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
                      .+....+.|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+++..+.++.+++.+......        
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--------   89 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTA-VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD--------   89 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH--------
Confidence            345566788888999999888 88888889999999999999999999999999999888888876655532        


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                         ......+...+.+.+.+....... ....|.+| +.|+...
T Consensus        90 ---~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~  128 (377)
T TIGR00890        90 ---SLAALYLTYGLASAGVGIAYGIAL-NTAVKWFP-DKRGLAS  128 (377)
T ss_pred             ---HHHHHHHHHHHHhHHHHHHHHhHH-HHHHHHcC-cccHHHH
Confidence               122233333333333332222223 55677777 4577654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.88  E-value=6.1e-09  Score=81.63  Aligned_cols=110  Identities=12%  Similarity=0.051  Sum_probs=76.2

Q ss_pred             HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175           14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (177)
                      .+..|.+.++ |++..+ ..+......++..++.+++|+++||+|||++++.+.++.++..+........  ..     .
T Consensus        49 ~~~~p~l~~~-g~s~~~-~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--~~-----~  119 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGD-LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TS-----S  119 (452)
T ss_pred             HHhhHHHHHc-CCCHHH-HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--cc-----c
Confidence            4556776666 998887 8888888899999999999999999999999999888888777655543110  00     1


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ....++...+.+...+....+.. ....|.+|++.|+++.
T Consensus       120 ~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~  158 (452)
T PRK11273        120 IAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIV  158 (452)
T ss_pred             HHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHH
Confidence            22233333343444333333344 6778999999998766

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.88  E-value=5.1e-09  Score=80.69  Aligned_cols=105  Identities=10%  Similarity=0.112  Sum_probs=76.0

Q ss_pred             HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175           13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV   92 (177)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (177)
                      .....+.+.++.|.+... ..+......+...++.+++|+++||+|||++++.+..+..+..+.+....           
T Consensus        22 ~~~~~~~~~~~~~~s~~~-~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~-----------   89 (393)
T PRK11195         22 LLFAAIALLKELHYPDWS-QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI-----------   89 (393)
T ss_pred             HHHHHHHHHHHcCCcHHH-HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH-----------
Confidence            334445556777777766 77888888899999999999999999999999999988877665543321           


Q ss_pred             HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                       +.  ++...+ .+.......|...+++.|++|+++|+++.
T Consensus        90 -~~--~~~r~l-~G~~~a~~~pa~~a~i~~~~~~~~~~~a~  126 (393)
T PRK11195         90 -HP--LLAYGL-VGIGAAAYSPAKYGILTELLPGEKLVKAN  126 (393)
T ss_pred             -HH--HHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence             11  223333 33333444566568999999999999876

>TIGR00898 2A0119 cation transport protein

Probab=98.86  E-value=1.1e-09  Score=86.90  Aligned_cols=91  Identities=18%  Similarity=0.130  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (177)
                      ........+...++.++.+++.||+|||+.+..+.++.+++.++.....   ...      .........+........ 
T Consensus       358 ~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---~~~------~~~~~~~~~~~~~~~~~~-  427 (505)
T TIGR00898       358 YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---VDL------YFLRTALAVLGKFGITSA-  427 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---CCc------hHHHHHHHHHHHHHHHHH-
Confidence            3444556677889999999999999999999988887777765544321   110      122222222222222222 


Q ss_pred             ccccceeeccccccccccchh
Q 045175          113 GPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       113 ~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+..+.+.+|.+|++.|+++.
T Consensus       428 ~~~~~~~~~e~~p~~~r~~~~  448 (505)
T TIGR00898       428 FQMVYLYTAELYPTVVRNLGV  448 (505)
T ss_pred             HHHHHHHhcccccHHHHhhhH
Confidence            234448999999999999876

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.86  E-value=7.2e-09  Score=81.73  Aligned_cols=115  Identities=17%  Similarity=0.104  Sum_probs=77.5

Q ss_pred             hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-CCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-GRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      ..+.|....+.|.++ +++|+++.+ +........+...++.+++|+++||+ |||+.++.+.++..++.+++....   
T Consensus        22 ~fs~Yg~~~~L~~yL~~~lgls~~~-a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~---   97 (493)
T PRK15462         22 YFSFYGMRALLILYLTNQLKYDDNH-AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE---   97 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh---
Confidence            345677888889888 567999888 77777878888899999999999999 999999999888887765443210   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccc--cccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQ--YRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~  133 (177)
                       ..      .....+...+...+.+....... ++.+|.+|++  .|.++.
T Consensus        98 -~~------~~~~~l~l~li~iG~G~~~~~~~-alv~elfp~~~~~R~sgf  140 (493)
T PRK15462         98 -IH------PSFLYLSLAIIVCGYGLFKSNVS-CLLGELYEPTDPRRDGGF  140 (493)
T ss_pred             -cc------hhHHHHHHHHHHHhcccccccHH-HHHHHHCCCCCcccccee
Confidence             00      11112222222222232223334 7899999986  576554

>TIGR00897 2A0118 polyol permease family

Probab=98.86  E-value=4.6e-09  Score=81.10  Aligned_cols=114  Identities=6%  Similarity=-0.170  Sum_probs=75.8

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      .....+.+.+.+++|.+..+ .........++..++.++.|+++||+|||+.+..+..+.+++.++.....  ...+   
T Consensus        30 ~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--~~~~---  103 (402)
T TIGR00897        30 GLEQGWLSPFLKALGLSPQQ-SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFG--LGHA---  103 (402)
T ss_pred             hhHHHhHHHHHHHhCCCHHH-hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--ccCc---
Confidence            34455667777888999887 77888888999999999999999999999999988888777764432211  0000   


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        .....++...+.+.+.+.. .+....+..+.+|+++|+++.
T Consensus       104 --~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~  143 (402)
T TIGR00897       104 --NYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAV  143 (402)
T ss_pred             --cHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHH
Confidence              0222233333333332222 222225677889999999886

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=98.85  E-value=8.2e-09  Score=80.63  Aligned_cols=119  Identities=17%  Similarity=0.171  Sum_probs=71.7

Q ss_pred             hhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            6 QFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      +..+.+....|.|.+. +..|.+... .........+...++.++.|+++||+|||+.++.+.++..++.+......  .
T Consensus       262 ~~~~~~~~~~~~~~y~~~~~g~s~~~-~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~  338 (438)
T PRK09952        262 ELLTMYIVTAFALNYSTQNLGLPREL-FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--E  338 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--H
Confidence            3445566677888877 557877664 44455556677788899999999999999998877665544433222211  1


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..+     .....++...+.+...+.. .+..+++.+|.+|++.|+++.
T Consensus       339 ~~~-----~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~  381 (438)
T PRK09952        339 AQS-----IFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGA  381 (438)
T ss_pred             cCC-----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHH
Confidence            111     0111122222222222222 333458999999999998765

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.85  E-value=4.6e-09  Score=81.06  Aligned_cols=110  Identities=13%  Similarity=-0.052  Sum_probs=74.9

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      .......|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.....++.+......         
T Consensus        30 ~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------   99 (406)
T PRK15402         30 DMIQPGMLAVVEDFNAGAEW-VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ---------   99 (406)
T ss_pred             hhHhcchHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc---------
Confidence            33344456677888998877 77778888898999999999999999999999988887777766544321         


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        .....++...+.+...+ ...+..+.+..|.+|++.|....
T Consensus       100 --~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~  139 (406)
T PRK15402        100 --SIEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEADAIKIT  139 (406)
T ss_pred             --cHHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhHHHHHH
Confidence              12222333333233222 22344457888999998877643

>PRK15075 citrate-proton symporter; Provisional

Probab=98.84  E-value=9.1e-09  Score=80.25  Aligned_cols=119  Identities=15%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             hhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            6 QFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      +..+.+.+..|.|.++++ .|++.++ ..+......++..++.+++|+++||+|||+.++.+.....+.... .... ..
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~-~~~~-~~  326 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAAD-SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYP-ALSW-LV  326 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-HHHH-HH
Confidence            445567788889999855 6998777 777777788888999999999999999999887655443322211 1111 11


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..+   .  .........+.+...+ ...+..+.+..|.+|++.|+++.
T Consensus       327 ~~~---~--~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~  369 (434)
T PRK15075        327 AAP---S--FARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGF  369 (434)
T ss_pred             cCC---c--hHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchhe
Confidence            111   0  1111111111222222 22333347889999999999876

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.83  E-value=4.3e-09  Score=81.09  Aligned_cols=109  Identities=15%  Similarity=0.054  Sum_probs=80.2

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      .......|.+.+++|.+.++ ..+..+...++..++.++.|+++||+|||+++..+..+.+++.+..+...         
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~-~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~---------   95 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSV-AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP---------   95 (393)
T ss_pred             hccchhHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc---------
Confidence            34556678888999999988 88888888899999999999999999999999999999999987776532         


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        .....++...+.+.+.+....... .+..+.+| ++|+...
T Consensus        96 --~~~~ll~~r~l~Gig~~~~~~~~~-~~~~~~~~-~~~~~~~  134 (393)
T PRK09705         96 --QSALLLSSALLGGVGIGIIQAVMP-SVIKRRFQ-QRTPLVM  134 (393)
T ss_pred             --chHHHHHHHHHHHhHHHHHhhhhh-HHHHHHcc-ccchhHH
Confidence              122333334444444443333333 77888887 6677664

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.79  E-value=1.1e-08  Score=79.04  Aligned_cols=116  Identities=13%  Similarity=0.021  Sum_probs=80.2

Q ss_pred             hhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175            5 QQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFIS   83 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~   83 (177)
                      ....+.+....+.|.++ ++.|.+..+ .........+...+..+++|+++||+|||+.+..+.++.++..+......  
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~g~s~~~-~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--   97 (400)
T PRK11646         21 LVVLGFFVVFPLISIRFVDQLGWAAVM-VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--   97 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--
Confidence            34445566666666665 678988877 77777777788888899999999999999999999888888876654421  


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                               ..+...+...+.+...+ ...+...++..|.+|++.|+++.
T Consensus        98 ---------~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~  137 (400)
T PRK11646         98 ---------EPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFF  137 (400)
T ss_pred             ---------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHH
Confidence                     12223333333333322 23343347889999999999876

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.79  E-value=2.3e-08  Score=79.23  Aligned_cols=111  Identities=18%  Similarity=0.092  Sum_probs=76.7

Q ss_pred             hhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175            6 QFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAFIS   83 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~   83 (177)
                      .-.++|....+.+.++ +++|+++.+ +.+..........+..+++|+++|| +|||+.++.+.++..++.+.+....  
T Consensus        26 er~~~y~~~~~l~~yl~~~lg~~~~~-a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~--  102 (489)
T PRK10207         26 ERFGYYGVQGILAVFFVKQLGFSQEQ-AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL--  102 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence            3455677777777777 668998887 7777777777777888899999999 9999999999999998887665421  


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccc
Q 045175           84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQY  128 (177)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  128 (177)
                        .      ......+.+.+.+.+.+ ...+...+++.|.+|++.
T Consensus       103 --~------~~~ll~~~~~l~~ig~g-~~~~~~~~li~~~~p~~~  138 (489)
T PRK10207        103 --L------KPDLIFIALGTIAVGNG-LFKANPASLLSKCYPPKD  138 (489)
T ss_pred             --c------chhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCc
Confidence              0      01112223333333333 333444489999999875

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.79  E-value=1.8e-08  Score=77.56  Aligned_cols=115  Identities=22%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             hhhchhHHHHhhHHHHHHcCCCCchH----HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175            6 QFTGINTVMYYNPTIVQMASFQSNQL----ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF   81 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~   81 (177)
                      ...+......+.|.+.++.|.+..+.    ......+..+...++.++.|+++||+|||+.++.+.+...++.++.....
T Consensus        26 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  105 (408)
T PRK09874         26 TGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ  105 (408)
T ss_pred             HHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444556667888888888876541    25566677788899999999999999999999988877777665544321


Q ss_pred             HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                                 .....++...+.+.. + +..+....+..|.+|++.|+...
T Consensus       106 -----------~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~  144 (408)
T PRK09874        106 -----------NIWQFLILRALLGLL-G-GFVPNANALIATQVPRNKSGWAL  144 (408)
T ss_pred             -----------hHHHHHHHHHHHHHh-h-hhHHhHHHHHHHhcCHhhhhHHH
Confidence                       122233333333322 2 22333346778899999998764

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.78  E-value=1.2e-08  Score=80.25  Aligned_cols=115  Identities=11%  Similarity=0.083  Sum_probs=70.4

Q ss_pred             hchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175            8 TGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS   86 (177)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (177)
                      ...+....|.|.++ +.+|++..+ +........++..++.+++|+++||+|||+.++....+..+........   ...
T Consensus       272 ~~~~~~~~~~p~yl~~~~g~s~~~-a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~~~  347 (467)
T PRK09556        272 IVRIGIDNWSPVYAFQELGFSKED-AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ---HAT  347 (467)
T ss_pred             HHHHHHHHHHHHHHHHccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---hcC
Confidence            33456678899888 557998877 7777777888899999999999999999987665444333322111111   111


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +      .....+.....+... .+.....+....|.+|++.|+++.
T Consensus       348 ~------~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~  387 (467)
T PRK09556        348 S------EYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVAN  387 (467)
T ss_pred             c------HHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHH
Confidence            1      212222222222221 122212225666999999999887

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.78  E-value=4.5e-09  Score=81.43  Aligned_cols=109  Identities=21%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             HHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           12 TVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        12 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      ....+.|.+.++ .|.+... ..+......++..++.++.+++.||.++++.+..+.++..+..+.....     +    
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~-~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~----  310 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQ-IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-----P----  310 (417)
T ss_pred             hHHHhhHHHHHhccCCChhH-hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----c----
Confidence            445567888866 7888776 7777777888899999999999999877777777666655554433221     0    


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        ......+...+++.+.+. ..+..+++..|..|++.|+++.
T Consensus       311 --~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~  350 (417)
T PRK10489        311 --MWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRIN  350 (417)
T ss_pred             --hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHH
Confidence              122223333333332222 2334447889999999999876

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.78  E-value=6.4e-09  Score=79.67  Aligned_cols=112  Identities=15%  Similarity=-0.045  Sum_probs=78.8

Q ss_pred             chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175            9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      +......+.|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.+..+.++.++..+......       
T Consensus        21 ~~~~~~~~lp~~~~~~~~s~~~-~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~-------   92 (381)
T PRK03633         21 AIAVLNTLVPLWLAQEHLPTWQ-VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV-------   92 (381)
T ss_pred             hhhhHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            3455667788888889998877 88899999999999999999999999999999998888887776554421       


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                          .....++...+.+.+.+.. .+.......+..|++.|++..
T Consensus        93 ----~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~  132 (381)
T PRK03633         93 ----GFWSWLAWRFVAGIGCAMI-WVVVESALMCSGTSRNRGRLL  132 (381)
T ss_pred             ----cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHH
Confidence                1223333333333333322 222224556778888888765

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.77  E-value=1.8e-08  Score=78.72  Aligned_cols=110  Identities=15%  Similarity=0.062  Sum_probs=73.8

Q ss_pred             HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175           14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (177)
                      ....|.+. +.|++.++ ..+......++..++.++.|+++||+|||+.++.+.++.+++.+........  ..     .
T Consensus        47 ~~~~p~~~-~~g~s~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~  117 (438)
T TIGR00712        47 ALAMPYLV-EQGFSKGE-LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--TS-----S  117 (438)
T ss_pred             HhhhHHHH-HcCCCHhH-hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--cc-----h
Confidence            33456554 46998887 8888888899999999999999999999999988887777776554332100  00     0


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .....+...+.+...+....+.. ....|.+|+++|+++.
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~-~~i~~~~~~~~rg~~~  156 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCG-RTMVHWWSQSERGTIV  156 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHH-HHHHHhcCcccchhHH
Confidence            11222333333433333333344 6788999999999886

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.76  E-value=9.4e-09  Score=79.21  Aligned_cols=114  Identities=19%  Similarity=0.213  Sum_probs=76.0

Q ss_pred             hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175            7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS   86 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (177)
                      ....+....|.|.+.++.|.+..+ .........++..++.++.|+++||+|||+.+..+.+...++.+.....    . 
T Consensus       233 ~~~~~~~~~~~p~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~-  306 (406)
T PRK11551        233 LIVLYFLLNWLPSLLVGQGLSRSQ-AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA----P-  306 (406)
T ss_pred             HHHHHHHHHHHHHHHHhCCCChhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc----C-
Confidence            344556666788888888988877 7777777888899999999999999999998877655555444332221    0 


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +      .....+...+.+.... +..+..+++..|.+|++.|+++.
T Consensus       307 ~------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~  346 (406)
T PRK11551        307 S------FAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGV  346 (406)
T ss_pred             c------HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhh
Confidence            0      1122222222232222 23344458899999999999876

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.75  E-value=1.5e-08  Score=80.56  Aligned_cols=96  Identities=16%  Similarity=0.058  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ..++.....++..++.+++|+++||+|||+.+..+.++..++.++.+...   ...  ........++.+.+.+.+.+..
T Consensus        58 ~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~---~~~--~~~~~~~~~~~r~l~G~~~g~~  132 (502)
T TIGR00887        58 SAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP---GSS--PKSVMATLCFWRFWLGVGIGGD  132 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc---Ccc--cchHHHHHHHHHHHHHHHHhhh
Confidence            56778888899999999999999999999999988888887776544421   000  0001123444455555555544


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..... ++..|.+|++.|+++.
T Consensus       133 ~~~~~-~~~~e~~p~~~Rg~~~  153 (502)
T TIGR00887       133 YPLSA-IITSEFATKKWRGAMM  153 (502)
T ss_pred             hHHHH-HHHHHhcChhhHHHHH
Confidence            44445 9999999999999887

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09952 shikimate transporter; Provisional

Probab=98.74  E-value=1.7e-08  Score=78.85  Aligned_cols=91  Identities=12%  Similarity=-0.022  Sum_probs=58.9

Q ss_pred             HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccce
Q 045175           39 VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWT  118 (177)
Q Consensus        39 ~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (177)
                      ..++..+|+++.|+++||+|||++++.+.++.+++.++.+.........   .......++.+.+.+.+.+..+.... .
T Consensus        73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~-~  148 (438)
T PRK09952         73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIG---WWAPVLLVTLRAIQGFAVGGEWGGAA-L  148 (438)
T ss_pred             HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHH---HHHHHHHHHHHHHHHhhhcccHHHHH-H
Confidence            4455678899999999999999999999988888877665532100000   00011233334444444444434444 8


Q ss_pred             eeccccccccccchh
Q 045175          119 VNSEVYREQYRGICG  133 (177)
Q Consensus       119 ~~~e~~p~~~R~~~~  133 (177)
                      +..|.+|++.|+...
T Consensus       149 ~~~e~~p~~~rg~~~  163 (438)
T PRK09952        149 LAVESAPKNKKAFYS  163 (438)
T ss_pred             HHHHhCCCCCCcHHH
Confidence            999999999998664

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.74  E-value=3.1e-08  Score=75.43  Aligned_cols=118  Identities=17%  Similarity=0.062  Sum_probs=73.5

Q ss_pred             hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175            7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS   85 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~   85 (177)
                      ....+....+.|.+. ++.|.+..+ .........+...++.++.++++||+|||+.+.....+..+..+....... ..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~  309 (394)
T TIGR00883       232 TTTFYLITTYLPTYLTQTLGLSANS-ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL-DS  309 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence            334455667788888 567888776 777777788888999999999999999999876554444333211111110 11


Q ss_pred             CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+      ...........+...+.... ..+++..|.+|++.|+++.
T Consensus       310 ~~------~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~  350 (394)
T TIGR00883       310 GS------FTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGA  350 (394)
T ss_pred             Cc------hHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEe
Confidence            11      22222223333333333333 3448999999999998765

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.74  E-value=1.7e-08  Score=78.24  Aligned_cols=110  Identities=18%  Similarity=0.180  Sum_probs=70.6

Q ss_pred             HHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175           12 TVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE   91 (177)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (177)
                      .+..+.|.+.++.|.+... .........++..++.++.+++.||+|||+.+..+.++.++..+.....   ...     
T Consensus       249 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----  319 (426)
T PRK12307        249 PIFGLLPTYLAGEGFDTGV-VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI---PQD-----  319 (426)
T ss_pred             HHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---ccc-----
Confidence            3556778888778887776 6666677788889999999999999999998887776655544332211   111     


Q ss_pred             hHHHHHHHHHHHHhhh-hccccccccceeeccccccccccchh
Q 045175           92 VYGWIAVIGLALYITF-FAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        92 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        ... ......++.. ...+..+..+.+..|.+|++.|+++.
T Consensus       320 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  359 (426)
T PRK12307        320 --NYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGT  359 (426)
T ss_pred             --cHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhh
Confidence              111 1112222221 12222333336789999999999876

>PRK11043 putative transporter; Provisional

Probab=98.74  E-value=2.2e-08  Score=77.12  Aligned_cols=103  Identities=13%  Similarity=0.026  Sum_probs=69.4

Q ss_pred             hHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 045175           17 NPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWI   96 (177)
Q Consensus        17 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (177)
                      .|.+.+++|.+..+ ..+...+..++..++.+++|+++||+|||+.++.+..+..++.+......           ....
T Consensus        29 ~~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~   96 (401)
T PRK11043         29 FKAIQADLQTSASA-VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-----------SAAQ   96 (401)
T ss_pred             HHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-----------CHHH
Confidence            34445788998887 88888888999999999999999999999999988877776665544321           0222


Q ss_pred             HHHHHHHHhhhhccccccccceeeccccccccccch
Q 045175           97 AVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGIC  132 (177)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~  132 (177)
                      .++...+.+.+.+. ..+....+..|.+|++.|+..
T Consensus        97 l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~  131 (401)
T PRK11043         97 LLVLRFVQAVGVCS-AAVIWQALVIDRYPAQKANRV  131 (401)
T ss_pred             HHHHHHHHHhhhHH-HHHHHHHHHHHhcCcHHHHHH
Confidence            33333333322222 223333678899998876543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.73  E-value=2.7e-08  Score=76.50  Aligned_cols=108  Identities=12%  Similarity=0.039  Sum_probs=72.6

Q ss_pred             HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175           13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV   92 (177)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (177)
                      .....|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.+...++.+......           
T Consensus        27 ~~p~~~~i~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----------   94 (394)
T PRK11652         27 YVPAIADMARDLNVREGA-VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH-----------   94 (394)
T ss_pred             HhccHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----------
Confidence            334467777889999888 78888888899999999999999999999999988877777665543321           


Q ss_pred             HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .....++...+.+.+.+ ...+....+..|.+|.+.|+...
T Consensus        95 ~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  134 (394)
T PRK11652         95 SLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHAN  134 (394)
T ss_pred             cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHH
Confidence            02222333333332222 22333336677888877776553

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.72  E-value=1.5e-08  Score=78.98  Aligned_cols=108  Identities=19%  Similarity=0.094  Sum_probs=73.5

Q ss_pred             hhHHHHHHcCCC--------CchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175           16 YNPTIVQMASFQ--------SNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA   87 (177)
Q Consensus        16 ~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (177)
                      ..|.+..+.+.+        ..+ ..+......++..++.++.|+++||+|||++++.+.++..++.++.....   ...
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~~~  125 (481)
T TIGR00879        50 ALALPAFEFKFTSANSDSYSSSL-WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---FAL  125 (481)
T ss_pred             hhhcHHHHHhcCCcccCCCChhH-HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---ccc
Confidence            344445455554        566 77888889999999999999999999999999988888777765553321   000


Q ss_pred             CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                           .....++...+.+.+.+.. .+....+..|.+|++.|+...
T Consensus       126 -----~~~~~~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~  165 (481)
T TIGR00879       126 -----SVEMLIVGRVLLGIGVGIA-SALVPMYLSEIAPKALRGALT  165 (481)
T ss_pred             -----chHHHHHHHHHHHhhhhHH-HhHHHHHHHccCChhhhhhhh
Confidence                 0123344444444444433 334448999999999998775

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.71  E-value=3.7e-08  Score=77.78  Aligned_cols=114  Identities=15%  Similarity=0.120  Sum_probs=79.2

Q ss_pred             hhhchhHHHHhhHHHHHH---cCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHH
Q 045175            6 QFTGINTVMYYNPTIVQM---ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAF   81 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~   81 (177)
                      .-.+.+.+..+.|.++++   +|.+..+ +........++..++.+++|+++|| +|||+.++.+.++.+++.++.....
T Consensus        22 ~~~~~~~~~~~L~~yl~~~~~lg~s~~~-ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~  100 (475)
T TIGR00924        22 ERFSYYGMQGILAVYLVQQAGLGFSQEQ-AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI  100 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc
Confidence            345667788888888754   7888887 8888888889999999999999999 8999999999988888776555421


Q ss_pred             HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccc---ccch
Q 045175           82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQY---RGIC  132 (177)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---R~~~  132 (177)
                                 ......+...+.+.+.+. ..+...++.+|.+|++.   |+.+
T Consensus       101 -----------~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~  142 (475)
T TIGR00924       101 -----------YPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGG  142 (475)
T ss_pred             -----------cHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccce
Confidence                       011222223333333222 33444478889998754   6544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.71  E-value=3.3e-08  Score=76.62  Aligned_cols=119  Identities=17%  Similarity=0.094  Sum_probs=77.3

Q ss_pred             hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175            7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS   86 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (177)
                      ..+........|.+.++.+.+..+ ..+......+...++.++.|+++||+|||+++..+.++.+++.+......... .
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~  107 (417)
T PRK10489         30 IFGLGLLGVAVPVQIQMMTGSTLQ-VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP-E  107 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC-C
Confidence            334455566678887777777766 88888888999999999999999999999999887777666654443221111 1


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +     ......+...+.+...+....+.. ++..|..|++.|+++.
T Consensus       108 ~-----~~~~l~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~  148 (417)
T PRK10489        108 P-----SLLAIYLLGLWDGFFGSLGVTALL-AATPALVGRENLMQAG  148 (417)
T ss_pred             C-----cHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccCHHHHHHHH
Confidence            1     012222222332333232223333 7889999998887765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.70  E-value=3.6e-08  Score=74.64  Aligned_cols=109  Identities=12%  Similarity=0.031  Sum_probs=70.7

Q ss_pred             HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175           14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (177)
                      ..+.+.+.++.|.+..+ .........+...++.++.+++.||+|||+.+..+.++..++.+......   ..      .
T Consensus       225 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~------~  294 (377)
T TIGR00890       225 IGLYKPYGQSLGLSDGF-LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP---ML------N  294 (377)
T ss_pred             HHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc---cc------h
Confidence            34445566777877666 66777888888999999999999999999998887777766654433211   00      0


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...........+...+......+ .+..|.+|++.|++..
T Consensus       295 ~~~~~~~~~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~  333 (377)
T TIGR00890       295 DVLFLATVALVFFTWGGTISLFP-SLVSDIFGPANSAANY  333 (377)
T ss_pred             hHHHHHHHHHHHHHhccchhccH-HHHHHHhhhhhhhhHh
Confidence            11122222233333333223333 7889999999998876

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.68  E-value=1.3e-08  Score=80.45  Aligned_cols=110  Identities=15%  Similarity=0.125  Sum_probs=70.5

Q ss_pred             HHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175           13 VMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE   91 (177)
Q Consensus        13 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (177)
                      ...+.|.+. ++.|.+..+ .........++..++.++.|+++||+|||+.++.+..+..+..+.....    ...    
T Consensus       294 ~~~~lp~~l~~~~g~~~~~-~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~----  364 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHT-VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI----GGA----  364 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc----ccc----
Confidence            446778888 478888877 7778888888899999999999999999999877665554443322111    110    


Q ss_pred             hHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           92 VYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                        .........+.....+.+..+....+..|.+|++.|+++.
T Consensus       365 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  404 (496)
T PRK03893        365 --NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGL  404 (496)
T ss_pred             --HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhccc
Confidence              1111111122111222222333337888999999999886

>TIGR00901 2A0125 AmpG-related permease

Probab=98.68  E-value=5.4e-08  Score=73.80  Aligned_cols=123  Identities=10%  Similarity=0.014  Sum_probs=74.2

Q ss_pred             hchhHHHHhhHHHHHHcCCCCchHHHHHHHH-HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC-
Q 045175            8 TGINTVMYYNPTIVQMASFQSNQLALLLSLA-VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS-   85 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (177)
                      .+.+....+.|.+.++.|.+.++ ......+ ..+...++.++++++.||+|||+.+..+.++.++...+......... 
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~-~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~  301 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEE-IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHH  301 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            34455666778888778888776 4444443 34567899999999999999999988777776665543332211000 


Q ss_pred             CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+... ...........+.+...+....... ++..|.+|++.|++..
T Consensus       302 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~~g~~~  347 (356)
T TIGR00901       302 DGITF-PHLLMLFLTITLEAVTGGLGTVAFV-AFLSKLSNPKFGATQM  347 (356)
T ss_pred             ccccc-chHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCCccHHHH
Confidence            00000 0112222223333333343444444 9999999999999764

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.67  E-value=1.4e-08  Score=78.06  Aligned_cols=97  Identities=23%  Similarity=0.096  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ...++.+..++.++|+++.|++.||+|||+++....++++++.++++........    .....++...+.+++++.+.=
T Consensus        86 ~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~----~~~m~~L~~~R~~LGiGIGGD  161 (538)
T KOG0252|consen   86 LALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSP----LGVMMTLCFFRFLLGIGIGGD  161 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCC----cchhhHHHHHHHHhhccccCC
Confidence            7788888899999999999999999999999999999999998744442211111    111223333344445544444


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      + |..-++.+|....+.||.-.
T Consensus       162 Y-PlSAtI~SE~an~~~RGa~i  182 (538)
T KOG0252|consen  162 Y-PLSATIMSESANKKTRGAFI  182 (538)
T ss_pred             C-cchHHHhhhhhhhcccccee
Confidence            4 44448999999999999765

>PRK10133 L-fucose transporter; Provisional

Probab=98.67  E-value=5.3e-08  Score=76.18  Aligned_cols=112  Identities=14%  Similarity=-0.063  Sum_probs=78.9

Q ss_pred             hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175           10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS   89 (177)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
                      ......+.|.+.+++|.+..+ ..+......++..++.++.|+++||+|||++++.+..+..++.+++.....  .+   
T Consensus        42 ~~~~~~~~p~i~~~~~~s~~~-~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~--a~---  115 (438)
T PRK10133         42 NNLNDILLPQFQQAFTLTNFQ-AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IM---  115 (438)
T ss_pred             HHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--cC---
Confidence            355666788888889999887 888888899999999999999999999999999999988888765432110  00   


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccc
Q 045175           90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGI  131 (177)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~  131 (177)
                         .....++.+.+.+.+.+....... .+..|..|.+.|..
T Consensus       116 ---~~~~ll~~r~l~G~g~g~~~~~~~-~~v~~~~~~~~~~~  153 (438)
T PRK10133        116 ---NYTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHF  153 (438)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHhhHH-HHHHHhCChhhHHH
Confidence               122334444444444444333333 67778777777653

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.67  E-value=3.2e-08  Score=78.84  Aligned_cols=89  Identities=22%  Similarity=0.181  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (177)
                      .++.....++..++.+++|+++|++|||+.++.+.+...++.++.+.+.           ......+++.+.+.+.+...
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-----------~~~~l~~GR~l~G~g~G~~~  160 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-----------SWYQLIVGRILTGLGVGGAS  160 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHhccchhhhh
Confidence            6888889999999999999999999999999999999999998887753           24455666667676666666


Q ss_pred             ccccceeeccccccccccchh
Q 045175          113 GPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       113 ~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...+ .|.+|+.|++.|+...
T Consensus       161 ~~~p-iy~sEiap~~~RG~l~  180 (513)
T KOG0254|consen  161 VLAP-VYISEIAPAHIRGTLV  180 (513)
T ss_pred             hcch-hhHhhcCChhhhHHHH
Confidence            6677 9999999999999776

>TIGR00896 CynX cyanate transporter

Probab=98.65  E-value=3.7e-08  Score=74.69  Aligned_cols=110  Identities=18%  Similarity=0.093  Sum_probs=73.9

Q ss_pred             chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175            9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      +........|.+.+++|++..+ ..+......++..++.++.|+++||+|||+.+..+.++..++.+.. ..     +  
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-----~--   85 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSV-AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-----P--   85 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----c--
Confidence            3344566788888999999888 8888899999999999999999999999999988777665554332 11     1  


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                          .....++...+.+.+.+....... .+..|.+| +.|++..
T Consensus        86 ----~~~~l~~~~~~~g~g~~~~~~~~~-~~~~~~~~-~~~~~~~  124 (355)
T TIGR00896        86 ----GTALLFAGTALIGVGIAIINVLLP-SLIKRDFP-QRVGLMT  124 (355)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHhccch-HHHHHhCc-chhhHHH
Confidence                122233333333333333222333 56778786 4676554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00895 2A0115 benzoate transport

Probab=98.64  E-value=6.7e-08  Score=73.77  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175            7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS   86 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (177)
                      ..+.+....|.|.+.++.|.+.++ .........++..++.++.++++||+|||+......+. .+...+....   .. 
T Consensus       263 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~-  336 (398)
T TIGR00895       263 LVGVYFLTNWLPKLMVELGFSLSL-AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLG-AVFAVLVGST---LF-  336 (398)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHHHHHHHHH---hh-
Confidence            344556667788777888888777 77777888888999999999999999999554433333 3222222211   01 


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +      .....+...+.+...+.. .+..+++..|.+|++.|+++.
T Consensus       337 ~------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~  376 (398)
T TIGR00895       337 S------PTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGV  376 (398)
T ss_pred             C------HHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHH
Confidence            1      222233333444433333 344458999999999999765

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.63  E-value=4.9e-08  Score=76.41  Aligned_cols=108  Identities=16%  Similarity=0.093  Sum_probs=74.4

Q ss_pred             hHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 045175           17 NPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGW   95 (177)
Q Consensus        17 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (177)
                      .+.+.+ ++|++.++ ..+..++..+...++.+..|++.||+|.|+++.++..+..+..+..+.......+      ...
T Consensus        57 ~~~~~~~~~~ls~~q-~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~------s~~  129 (462)
T PRK15034         57 TVNLNKIGFNFTTDQ-LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT------PFG  129 (462)
T ss_pred             HHHhhhhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC------CHH
Confidence            444444 68999988 7778888888888999999999999999999998888887777655542110011      122


Q ss_pred             HHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           96 IAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..++...+.+.+ +..+.+.. ..+++.+|+++||++.
T Consensus       130 ~lli~r~l~Gig-g~~f~~~~-~~vs~wfp~~~rG~A~  165 (462)
T PRK15034        130 IFIVIALLCGFA-GANFASSM-GNISFFFPKAKQGSAL  165 (462)
T ss_pred             HHHHHHHHHHHH-HHhHHHHH-HHHHHHCCHhHhHHHH
Confidence            333334444433 33444434 7899999999999876

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.63  E-value=6.4e-08  Score=73.62  Aligned_cols=114  Identities=12%  Similarity=0.010  Sum_probs=68.9

Q ss_pred             hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhH-hhHHHHHHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALS-SLTGVIISLVLLSWAF   81 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~   81 (177)
                      +....+........|.+. +++|.+..+ ..+......+...+..++.|.++||+|||+.++. +.....++.++.....
T Consensus         7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~   85 (375)
T TIGR00899         7 FLTGIAGALQFPTLSLFLSEEVRARPAM-IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR   85 (375)
T ss_pred             HHHHHHHHHHhhHHHHHHHcccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence            334444455556666665 678998877 7777777788888999999999999999887654 4444444433333210


Q ss_pred             HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccccc
Q 045175           82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG  130 (177)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~  130 (177)
                                 .....++...+.+ .......+....+..|..|++.|+
T Consensus        86 -----------~~~~l~~~~~~~g-~~~~~~~p~~~~~~~~~~~~~~~~  122 (375)
T TIGR00899        86 -----------NYFLLLVLGVLLS-SFASTANPQLFALAREHADRTGRE  122 (375)
T ss_pred             -----------hHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHhhhcchh
Confidence                       1222222222222 222233444446778888877776

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.62  E-value=9.1e-08  Score=74.24  Aligned_cols=111  Identities=14%  Similarity=-0.058  Sum_probs=77.9

Q ss_pred             HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175           13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV   92 (177)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (177)
                      .....|.+.+++|.+..+ ..+..+...++..+++++.|++.||+|||+.++.+..+.+++.++......  .+      
T Consensus        22 ~~~l~~~~~~~~~~s~~~-~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--~~------   92 (410)
T TIGR00885        22 TNPMVPQFQQAFTLTAFQ-AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--IM------   92 (410)
T ss_pred             HHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--hc------
Confidence            346678888889999888 888899999999999999999999999999999999988888765433210  00      


Q ss_pred             HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .....++...+.+.+.+....+.. .+..+..|++.|++..
T Consensus        93 ~~~~~l~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~  132 (410)
T TIGR00885        93 NYTLFLVGLFILTAGLGFLETAAN-PYILVMGPESTATRRL  132 (410)
T ss_pred             cHHHHHHHHHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHH
Confidence            122233333443444443333334 6778888888777654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.61  E-value=7.9e-08  Score=71.98  Aligned_cols=117  Identities=25%  Similarity=0.258  Sum_probs=83.4

Q ss_pred             hhhhhchhHHHHhhHHHHHHc-CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCch-hhhHhhHHHHHHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIVQMA-SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKK-LALSSLTGVIISLVLLSWAF   81 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~   81 (177)
                      +....+......+.|.+.++. |.++.+ .........++..++.++.+++.||+|||+ .+..+..+..++.+......
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAE-AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            344455667777888888654 888777 778888889999999999999999999999 88888877777766554421


Q ss_pred             HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                                 ......+...+.+.+.+.. .+....+..|..|++.|++..
T Consensus       264 -----------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~  303 (352)
T cd06174         264 -----------SLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGTAS  303 (352)
T ss_pred             -----------cHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHH
Confidence                       0222333334444444433 444458999999999999776

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.58  E-value=9.1e-08  Score=75.18  Aligned_cols=107  Identities=13%  Similarity=0.111  Sum_probs=72.0

Q ss_pred             HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175           13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV   92 (177)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (177)
                      ...+.|.+.+++|.+.++ ..+......+...++.++.|+++||+|||+.++.+.++.++..++.+...           
T Consensus        38 ~~~~~~~i~~~~g~s~~~-~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------  105 (455)
T TIGR00892        38 VTVFFKELQQIFQATYSE-TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS-----------  105 (455)
T ss_pred             hhhhHHHHHHHhCcchhH-HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh-----------
Confidence            455678888889998887 77777777777889999999999999999999988887777766554421           


Q ss_pred             HHHHHHHHH-HHHhhhhccccccccceeeccccccccccchh
Q 045175           93 YGWIAVIGL-ALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        93 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ......+.. .+.+.+.+....+.. .+..+.+| +.|+++.
T Consensus       106 ~~~~l~~~~~~l~G~~~~~~~~~~~-~~~~~~~~-~~r~~a~  145 (455)
T TIGR00892       106 NVIELYLTAGFITGLGLAFNFQPSL-TMLGKYFY-RRRPLAN  145 (455)
T ss_pred             hHHHHHHHHHHHHHhcchhhhhHHH-HHHHHHHH-hhHHHHH
Confidence            011122222 222333332223333 67778886 6787775

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.57  E-value=4.5e-07  Score=69.12  Aligned_cols=126  Identities=18%  Similarity=0.242  Sum_probs=88.5

Q ss_pred             chhhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHH
Q 045175            2 QAFQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWA   80 (177)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~   80 (177)
                      .++..+.+....+.+.|.++ .++|.+..+ +........+.+.+..+.+|+++||+|.+++++....++.++..+....
T Consensus       226 lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~-Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~  304 (417)
T COG2223         226 LYFATFGGFVGFSAYLPMYLVTQFGLSPVT-AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLF  304 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence            35677888888999999999 678998887 7788888888899999999999999999999998888888887555443


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ......    ..................+.+-+... .+++.++|.+..+...
T Consensus       305 ~~~~~~----~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~~~~G~v~G  352 (417)
T COG2223         305 LTGFGH----GGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFPKETGAVTG  352 (417)
T ss_pred             cccccc----CcchHHHHHHHHHHHHHhccCcchhe-eechHHHHhhhhHHHH
Confidence            211111    11122223323333344445545455 8888999887766554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.57  E-value=2.6e-07  Score=79.99  Aligned_cols=107  Identities=13%  Similarity=0.096  Sum_probs=67.3

Q ss_pred             HHHHHHcCCCCch-HHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 045175           18 PTIVQMASFQSNQ-LALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWI   96 (177)
Q Consensus        18 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (177)
                      +.+...++.+.+. ...+..++..+...++.+++|+++||+|||++++.+.++.++..++........        ....
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~  105 (1146)
T PRK08633         34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG--------WFWL  105 (1146)
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc--------cHHH
Confidence            3334455554332 135566677788889999999999999999999888776655554433322100        1222


Q ss_pred             HHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           97 AVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .++...+.+.+.+ ...+..++++.|++|++.|+.+.
T Consensus       106 l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~  141 (1146)
T PRK08633        106 AFAVTFLLGAQSA-IYSPAKYGIIPELVGKENLSRAN  141 (1146)
T ss_pred             HHHHHHHHHHHHH-hhchHHHhhhHHhcCcccchhhh
Confidence            3333333333333 34445558999999999999876

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.56  E-value=1.7e-07  Score=71.77  Aligned_cols=108  Identities=14%  Similarity=0.024  Sum_probs=68.3

Q ss_pred             HHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175           14 MYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV   92 (177)
Q Consensus        14 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (177)
                      ..+.|.+. ++.|.+..+ .........++..++.++.+++.||+|||+.+..+.+...+..+.....    ..+     
T Consensus       258 ~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~-----  327 (405)
T TIGR00891       258 QDLLPTYLKADLGLSPHT-VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI----GAN-----  327 (405)
T ss_pred             hhhhHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh----CCc-----
Confidence            34556666 567888877 7777778888899999999999999999999887766543332211111    110     


Q ss_pred             HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                       .....+...+.+...... .+..+.+..|.+|++.|+++.
T Consensus       328 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  366 (405)
T TIGR00891       328 -VAVLGLGLFFQQMLVQGI-WGILPKHLGEYFPTDQRAAGL  366 (405)
T ss_pred             -hHHHHHHHHHHHHHHccc-hhhHHHHHhhhCCcchhHHHh
Confidence             112222222222222222 233337889999999999876

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.55  E-value=3.2e-07  Score=69.87  Aligned_cols=106  Identities=16%  Similarity=0.119  Sum_probs=77.6

Q ss_pred             hHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 045175           17 NPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWI   96 (177)
Q Consensus        17 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (177)
                      .+.+.+++|++++| ..++..+..+.+.+..++.|.+.||+|.|++...+.++..+-.+..+......         ++.
T Consensus        37 ~~~i~~~~~LS~~q-~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~---------~~~  106 (417)
T COG2223          37 GVFIKSDFGLSEGQ-KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP---------STW  106 (417)
T ss_pred             HhhhccccCCCHHH-HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC---------chH
Confidence            44555788999999 88899999999999999999999999999999999988888776666543211         112


Q ss_pred             HHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           97 AVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .++...++.+..+....... .+.++.||++++|.+.
T Consensus       107 ~ll~~gll~G~~GasFav~m-~~~s~~fP~~~qG~Al  142 (417)
T COG2223         107 QLLVIGLLLGLAGASFAVGM-PNASFFFPKEKQGLAL  142 (417)
T ss_pred             HHHHHHHHHhcccceehccc-ccccccCChhhhhHHH
Confidence            23333333333333333333 7999999999999887

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.55  E-value=3.7e-07  Score=69.75  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=85.1

Q ss_pred             hhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 045175           16 YNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGW   95 (177)
Q Consensus        16 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (177)
                      -.|.+.++.+++..+ ...+.+...+..-++-++.|.++||.+.|+.+-.++++.+++.+++++..           +..
T Consensus        51 a~p~l~e~~~lsk~~-lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~-----------s~~  118 (448)
T COG2271          51 AMPALIEDGGLSKTQ-LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP-----------SLF  118 (448)
T ss_pred             ccHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh-----------HHH
Confidence            367777788899988 88888889999999999999999999999999999999999998888742           233


Q ss_pred             HHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           96 IAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...++..+-+.+-+.++.|.. ..++..+|+++||+..
T Consensus       119 ~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~  155 (448)
T COG2271         119 LFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWW  155 (448)
T ss_pred             HHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceE
Confidence            333334444555566777777 8999999999999876

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.54  E-value=1.1e-07  Score=73.37  Aligned_cols=67  Identities=15%  Similarity=0.182  Sum_probs=54.4

Q ss_pred             hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHH
Q 045175            8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLV   75 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   75 (177)
                      .+.+....|.|.+.++.|.+..+ ......+..++..++.++.+++.||+|||+.+..+..+..++.+
T Consensus       219 ~~~~~~~~~lp~~l~~~g~s~~~-ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~  285 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGASAQY-SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFC  285 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhh-hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence            45566778889988778988877 77778888899999999999999999999988877666555543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.54  E-value=3e-07  Score=73.19  Aligned_cols=111  Identities=15%  Similarity=0.123  Sum_probs=70.6

Q ss_pred             hhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175            6 QFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAFIS   83 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~   83 (177)
                      .-.+.+....+.+.++ +++|++..+ +.+.............+++|+++|| +|||+.++.+.++..++.+++....  
T Consensus        33 ~~~~~y~~~~~l~~yl~~~lg~s~~~-a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~--  109 (500)
T PRK09584         33 ERFGYYGLQGIMAVYLVKQLGMSEAD-SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG--  109 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence            3445677777888887 778998877 6666655555445556789999999 5999999999888887765554321  


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccc
Q 045175           84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQY  128 (177)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  128 (177)
                        .      ......+...+.+.+.+.. .+...++..|.+|++.
T Consensus       110 --~------~~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~  145 (500)
T PRK09584        110 --H------DAGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDD  145 (500)
T ss_pred             --c------cHHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCc
Confidence              0      0112222223333333322 3343378999998653

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.53  E-value=1.6e-07  Score=55.50  Aligned_cols=65  Identities=18%  Similarity=0.248  Sum_probs=56.7

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLT   68 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~   68 (177)
                      ++..+++......|.|.+.++.|++..+ .+.+..+..+...++.+++|+++||++|++..+....
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~-iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSPSQ-IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            4566777888889999999999999998 8889999999999999999999999999888765443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.50  E-value=4.4e-07  Score=70.44  Aligned_cols=117  Identities=17%  Similarity=0.102  Sum_probs=69.0

Q ss_pred             hhhhhchhHHHHhhHHHHHHc--CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhh-hHhhHHHHHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIVQMA--SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA-LSSLTGVIISLVLLSWA   80 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~   80 (177)
                      ++...+.+....|.|.++++.  |.+..+ +........++..+|.+++|+++||++||+.. ....+...+.. +....
T Consensus       252 ~~~~~~~~~~~~~~p~~l~~~~~~~s~~~-~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~  329 (412)
T TIGR02332       252 FCLTNTLSAINIWTPQILQSFNQGSSNIM-IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA  329 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHH-hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh
Confidence            344556677888999999775  455555 66778888888999999999999999987753 33333333322 11111


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                          ...      .............+.. ...+..+....|.+|++.|+++.
T Consensus       330 ----~~~------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~  371 (412)
T TIGR02332       330 ----TDH------NLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAI  371 (412)
T ss_pred             ----cCC------HHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHH
Confidence                111      1111111111111111 11233446667889999999876

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.50  E-value=2e-07  Score=72.73  Aligned_cols=107  Identities=9%  Similarity=0.061  Sum_probs=82.1

Q ss_pred             HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175           14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (177)
                      .+-.|.+.++.|+++.+....+...+..+..++.++.|+++||+|-|+++..+.+..+++.++.++..           .
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-----------S  114 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-----------S  114 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence            34467777889999887466777888888999999999999999999999999999888887777642           1


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...+.+...+++.+-+..+  ..+.++...+|+++|++++
T Consensus       115 l~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~rat  152 (511)
T TIGR00806       115 VWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAA  152 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHH
Confidence            3334444455555544444  4448999999999999887

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.50  E-value=5.3e-07  Score=68.68  Aligned_cols=123  Identities=15%  Similarity=0.016  Sum_probs=68.8

Q ss_pred             hhchhHHHHhhHHHHHHcC--CCCchHHHHHHH----HHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHH
Q 045175            7 FTGINTVMYYNPTIVQMAS--FQSNQLALLLSL----AVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWA   80 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~----~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~   80 (177)
                      +...+...+..+.+.++..  .++.+.....+.    ...+...++.++.|+++||+|||++++.+.++..++.++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~   85 (394)
T TIGR00883         6 WFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC
Confidence            3444555666666665543  334331222222    1223335688999999999999999999888888777655442


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .......   .......++...+.+.+.+... +....+..|.+|++.|+...
T Consensus        86 ~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~  134 (394)
T TIGR00883        86 PSYATIG---IWAPILLLLARLIQGFSLGGEW-GGAALYLAEYAPPGKRGFYG  134 (394)
T ss_pred             CChhhhH---HHHHHHHHHHHHHHHhhccccc-cccHHHhhhcCCcccchHHH
Confidence            1100000   0000122333333333333333 33348999999999998765

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.49  E-value=1.4e-07  Score=74.18  Aligned_cols=100  Identities=10%  Similarity=-0.098  Sum_probs=69.1

Q ss_pred             HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 045175           23 MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLA  102 (177)
Q Consensus        23 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (177)
                      +++.+..+ .........++..++.+++|+++||+|||+.+..+.++.+++.++......         ......++...
T Consensus        70 ~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~  139 (465)
T TIGR00894        70 NFKWSGAL-QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG---------GGIALVVFCRV  139 (465)
T ss_pred             CCCCCHHH-hhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH---------cCchHHHHHHH
Confidence            45666666 667778888899999999999999999999999888877777655433210         00122333333


Q ss_pred             HHhhhhccccccccceeeccccccccccchh
Q 045175          103 LYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +.+.+.+ ...+....+.+|.+|++.|++..
T Consensus       140 ~~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~  169 (465)
T TIGR00894       140 IQGLAQG-SVSPATHKIIVKWAPPKERSRLL  169 (465)
T ss_pred             HHHHhcc-cchhhHHHHHHhcCCHHHHHHHH
Confidence            4343333 33444448999999999999876

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.49  E-value=7.6e-07  Score=67.54  Aligned_cols=115  Identities=14%  Similarity=0.141  Sum_probs=69.7

Q ss_pred             chhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175            9 GINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA   87 (177)
Q Consensus         9 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (177)
                      ..+....+.|.+. +.+|.+..+ .........+...++.+++++++||+|||+.+..+.....++..++....  ....
T Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~  316 (366)
T TIGR00886       240 SFLGVSSIFAMFFKDQFGLSKVT-AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL--VSPL  316 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC--CCcc
Confidence            3445566777777 456888777 77677777888899999999999999998887766655555443333211  1100


Q ss_pred             CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                           ................+.+.+. .+.+.+|..| +.|++..
T Consensus       317 -----~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~  355 (366)
T TIGR00886       317 -----SLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVS  355 (366)
T ss_pred             -----hHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHH
Confidence                 1222222223333333433333 4478888887 4666543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.48  E-value=7.4e-07  Score=70.24  Aligned_cols=117  Identities=16%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEec----ccCCchhhhHh-hHHHHHHHHHHHHHHHhc-
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLID----HFGRKKLALSS-LTGVIISLVLLSWAFISG-   84 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~~~~~-~~~~~~~~~~~~~~~~~~-   84 (177)
                      .....+.+.+.++.|.+... ...+..+..+...+..++.|+++|    |+|||+.++.. .+...++.+++....... 
T Consensus        21 ~l~~~~l~~yl~~lg~~~~~-~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~   99 (477)
T TIGR01301        21 ALQLSLLTPYVQELGIPHAW-ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH   99 (477)
T ss_pred             HHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence            44455566677889998877 888888888999999999999999    59999998764 444444443333221100 


Q ss_pred             ---C--CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccc
Q 045175           85 ---S--SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYR  129 (177)
Q Consensus        85 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R  129 (177)
                         .  +...........++...+.....+....+.. ++++|.+|++.|
T Consensus       100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~  148 (477)
T TIGR01301       100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDAR  148 (477)
T ss_pred             hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhH
Confidence               0  0000000011223333333444444555666 899999998865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.47  E-value=2.9e-07  Score=72.53  Aligned_cols=116  Identities=14%  Similarity=0.027  Sum_probs=75.2

Q ss_pred             chhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175            9 GINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA   87 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (177)
                      +.+...++.|.+.++ .|.+..+ .........++..++.++.|++.||+|||+.+..+..+.+++.......  .....
T Consensus       270 ~~~~~~~~~p~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~  346 (485)
T TIGR00711       270 GLYGSFYLLPLYLQQVLGYTALQ-AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT--FTPDT  346 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc--CCCCC
Confidence            345566778888854 6888877 7778888888899999999999999999999888777666655433311  11111


Q ss_pred             CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                           ..........+.+.+.+....+.. ....+..|++.|+++.
T Consensus       347 -----~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~  386 (485)
T TIGR00711       347 -----PFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGS  386 (485)
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHH
Confidence                 011222223333333333333444 5566778999998876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.47  E-value=1.4e-07  Score=74.55  Aligned_cols=49  Identities=16%  Similarity=0.052  Sum_probs=40.0

Q ss_pred             hHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc
Q 045175           11 NTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK   60 (177)
Q Consensus        11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr   60 (177)
                      +....+.|.++ ++.|++..+ +.....+..++..++.+++|+++||++||
T Consensus       269 ~~~~~~~p~~l~~~~g~s~~~-a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        269 LTMDNIIAEYFYDRFGLSLET-AGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHhHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            34455677777 556998877 77888888899999999999999999876

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.46  E-value=3.7e-07  Score=70.54  Aligned_cols=119  Identities=15%  Similarity=0.156  Sum_probs=76.2

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-----CCch-hhhHhhHHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-----GRKK-LALSSLTGVIISLVL   76 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~   76 (177)
                      ++.|-........-.|.++++.|++.++ ......+...  .+..+++|+++||+     |||| .++.+.++.+++...
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~-ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~   84 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTVEGLDIQT-IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA   84 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence            4556666677777889999999999988 6656554443  68899999999999     8876 566666666666544


Q ss_pred             HHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           77 LSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +...   ....     ..+.......+.+ .+.....+...++..|.+|+++|++..
T Consensus        85 l~~~---~~~~-----~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~  132 (402)
T PRK11902         85 MAFC---PPHA-----ALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGA  132 (402)
T ss_pred             HHhc---Cccc-----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHH
Confidence            3332   1110     1122222222322 233333444458999999999998765

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.46  E-value=2.6e-07  Score=72.47  Aligned_cols=54  Identities=13%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             hchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc--CCchh
Q 045175            8 TGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF--GRKKL   62 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~   62 (177)
                      ...+....|.|.++++ .|++..+ .........++..++.+++|+++||+  |||..
T Consensus       267 ~~~~~~~~~~P~~l~~~~g~s~~~-~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~  323 (452)
T PRK11273        267 LLRYGILDWSPTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  323 (452)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch
Confidence            3345677888999955 6888776 76677777888889999999999999  55543

>PTZ00207 hypothetical protein; Provisional

Probab=98.45  E-value=3.2e-07  Score=73.89  Aligned_cols=115  Identities=9%  Similarity=-0.034  Sum_probs=72.9

Q ss_pred             hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175           10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS   89 (177)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
                      .|..+.+.|.+.+++|++..+ ..++..+.... ..+.++.|+++||+|||++++++.++..++.++.+........+  
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~-l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~--  118 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRD-LSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEG--  118 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccC--
Confidence            456678888888999999887 55555443333 35666789999999999999999999999887776642111101  


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                         ..+.+.+...+.+.+.+....... ....+.|| +.||...
T Consensus       119 ---s~~~l~l~r~l~G~G~~~~~~~~~-~~i~~~Fp-~~RG~a~  157 (591)
T PTZ00207        119 ---SVVRLSVYNGLMTLGCMLFDLGAV-VTVLSVFP-SNRGAVV  157 (591)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCh-hhhHHHH
Confidence               122223333333333222222233 56788887 6788776

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.45  E-value=4.6e-07  Score=68.84  Aligned_cols=120  Identities=22%  Similarity=0.265  Sum_probs=69.0

Q ss_pred             hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhH-hhHHHHHHHHHHHHHHHhc
Q 045175            7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALS-SLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~   84 (177)
                      .........+.|.+. +..|.+..+ .........++..++.++.++++||+|||+..+. ......+..+.........
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (399)
T TIGR00893       228 NIGLGFFLTWFPTYLVQERGLSILE-AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT  306 (399)
T ss_pred             HhHHHHHHHHHHHHHHHHhcccHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            344456667778777 456877766 7777788888899999999999999999862211 1111111111111111111


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...    . .....+...... ....+..+..+.+..|.+|++.|+++.
T Consensus       307 ~~~----~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~  349 (399)
T TIGR00893       307 NYV----N-IPYAALALVALG-FFGLGAGAIGWALISDNAPGNIAGLTG  349 (399)
T ss_pred             ccc----h-hHHHHHHHHHHH-HhchhhhhHHHHHHHhhcChhHHHHHH
Confidence            100    0 111222222222 222234566668999999999999876

>TIGR00897 2A0118 polyol permease family

Probab=98.44  E-value=8.5e-07  Score=68.53  Aligned_cols=59  Identities=19%  Similarity=0.086  Sum_probs=48.0

Q ss_pred             hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhh
Q 045175            5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLAL   64 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~   64 (177)
                      .+..+.+....|.|.+.++.|.+..+ .........++..++.++.|+++||+|||+.+.
T Consensus       233 ~~~~~~~~~~~~~p~~~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFVAELGFSTSE-WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR  291 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            34455667778899998888988877 666667778889999999999999999988764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.40  E-value=1.1e-06  Score=68.87  Aligned_cols=72  Identities=17%  Similarity=0.150  Sum_probs=53.2

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL   76 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~   76 (177)
                      +++.+.++...+++.|++.++ .++... ......+..+...++.+++|+++||+|||++++++.++..++...
T Consensus       261 y~~tFG~fvg~s~~lp~~~~~-~~~~~~-~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~  332 (462)
T PRK15034        261 YLATFGSFIGFSAGFAMLAKT-QFPDVN-ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSAL  332 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HcChHH-HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            456677777788889998855 333333 333445556778899999999999999999999888877766543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.40  E-value=4.9e-07  Score=65.30  Aligned_cols=116  Identities=16%  Similarity=0.054  Sum_probs=79.3

Q ss_pred             chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175            9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      ..|....|.|.+-++.|+++++ ...+.....++..+ .++.|.+.|++|+|.+++++.+...++...+........+. 
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~-l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~-   93 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQ-LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS-   93 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHH-HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc-
Confidence            4678889999999999999998 88888888888776 48889999999999999999999888887665554333221 


Q ss_pred             cchhHHHHHHHHHHHHhhhhcccc-ccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGM-GPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~R~~~~  133 (177)
                          .+.+.+..... ..+.+.++ ...........||. .||++.
T Consensus        94 ----~~~~~~~~~~~-l~~~s~~~~~ta~lvt~~~NFP~-~RG~vv  133 (250)
T PF06813_consen   94 ----LPVWLMCLFLF-LGGNSSCWFNTASLVTCVRNFPR-SRGTVV  133 (250)
T ss_pred             ----cchHHHHHHHH-HHcccHHHhhhHHHHHHHHhCcc-ccCcee
Confidence                12222222222 22223222 22222445577885 799876

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.39  E-value=1.1e-06  Score=67.71  Aligned_cols=69  Identities=13%  Similarity=0.163  Sum_probs=55.1

Q ss_pred             hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS   73 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~   73 (177)
                      +..+.+......+.|.+. ++.|.+..+ .........++..++.++.|+++||+|||+.++.+.....+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882        12 FLYFFIMSAYFPFFPIWLHDVNGLSKTD-TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL   81 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            445555566667777777 567999888 888888999999999999999999999999998766555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.38  E-value=2.3e-07  Score=71.43  Aligned_cols=109  Identities=22%  Similarity=0.177  Sum_probs=66.8

Q ss_pred             hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175           10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS   89 (177)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
                      ......+.|.+.++.|.+.   .........++..++.++.+++.||+|||+.+..+.++.+++.+......        
T Consensus       232 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------  300 (399)
T PRK05122        232 FGTIATFITLYYAARGWDG---AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--------  300 (399)
T ss_pred             HHHHHHHHHHHHHHccccc---chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--------
Confidence            3445566677776666632   33445566777788999999999999999988877776666654433311        


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                         ......+...+.+.+.+....... ....|..|++.|+++.
T Consensus       301 ---~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~g~~~  340 (399)
T PRK05122        301 ---SPWMALIGAALTGFGFSLVFPALG-VEAVKRVPPQNRGAAL  340 (399)
T ss_pred             ---cHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhCCHHHHHHHH
Confidence               122223333333333332222222 5667889999998876

>TIGR00901 2A0125 AmpG-related permease

Probab=98.38  E-value=5.2e-07  Score=68.43  Aligned_cols=111  Identities=15%  Similarity=0.065  Sum_probs=65.6

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-----CCchhh-hHhhHHHHHHHHHHHHHHHhc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-----GRKKLA-LSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      ...+.-.|.+.++.|++.++ ..+.... .+...+ .+++|+++||+     ||||.+ +.+.+..+++.......   .
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~-~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~   78 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKT-IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---V   78 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHH-HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---C
Confidence            34455678888999999887 5555543 333333 88999999997     898875 45555555554333321   1


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...     ..........+.. .......+...++..|.+|++.|+.+.
T Consensus        79 ~~~-----~l~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~  121 (356)
T TIGR00901        79 PST-----DLPLLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGS  121 (356)
T ss_pred             cch-----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence            111     1111222222222 222223344448899999999999776

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.37  E-value=4e-07  Score=68.73  Aligned_cols=106  Identities=19%  Similarity=0.004  Sum_probs=72.3

Q ss_pred             HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175           14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (177)
                      +...|..-..+|.+.-+ ...++.....+..+++..+|.++|++|||+.+.......++...+-+..           +.
T Consensus        98 s~i~~~l~~~w~~s~~q-~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s-----------pn  165 (528)
T KOG0253|consen   98 SLILPALDEVWGPSEGQ-APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS-----------PN  165 (528)
T ss_pred             HHHHHHHHhhhchhhhh-hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC-----------CC
Confidence            33445555667766666 6677777888899999999999999999999888777766665433321           11


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .....++.+..+.+++.  .|..-++-.|..|...|...+
T Consensus       166 f~~L~~f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~  203 (528)
T KOG0253|consen  166 FASLCVFRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLT  203 (528)
T ss_pred             eehhhHHHHHHhccCCC--ccHhHHHHHHhccCcCCCcch
Confidence            23344445554444443  444337889999999998776

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.37  E-value=1.2e-06  Score=67.61  Aligned_cols=60  Identities=13%  Similarity=0.156  Sum_probs=43.4

Q ss_pred             HHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH
Q 045175           13 VMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS   73 (177)
Q Consensus        13 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~   73 (177)
                      ...+.|.+. ++.|.+..+ .........++..++.+++|+++||+|||+.+..+.+...+.
T Consensus       235 ~~~~~p~~l~~~~~~~~~~-~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~  295 (393)
T PRK15011        235 YIINMPLFIINELHLPEKL-AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF  295 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            445677777 557888766 555555666677889999999999999999877655544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.36  E-value=2.6e-07  Score=72.68  Aligned_cols=110  Identities=11%  Similarity=-0.076  Sum_probs=64.3

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc--CCchhhhHhh--HHHHHHHHHHHHHHHhcCC
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF--GRKKLALSSL--TGVIISLVLLSWAFISGSS   86 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~   86 (177)
                      +....+.|.+.++.|.+..+ ......+..++..++.+++++++||.  ++|+......  +..+++.+.....     +
T Consensus       258 ~~~~~~l~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~  331 (455)
T TIGR00892       258 FAPIIFLVPYAKDKGVDEYE-AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-----G  331 (455)
T ss_pred             cchHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----c
Confidence            34445667777778888877 77777778888899999999999973  3343333222  2222222211111     0


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                            ......+...+.+...+.. .+..+++..|.+|++.|+++.
T Consensus       332 ------~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~  371 (455)
T TIGR00892       332 ------DYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAV  371 (455)
T ss_pred             ------hHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHH
Confidence                  1222233334444433333 334447888999999888876

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.35  E-value=8.4e-07  Score=66.94  Aligned_cols=107  Identities=10%  Similarity=-0.065  Sum_probs=72.1

Q ss_pred             HhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175           15 YYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        15 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (177)
                      .+.|.+.++ .|.+..+ .........++..++.++.+++.||+|||+.+..+..+.+++........         . .
T Consensus       232 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~  300 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTH-YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP---------P-N  300 (365)
T ss_pred             HHhHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc---------h-h
Confidence            667888755 7888777 77777778888899999999999999999988877665555554333211         0 0


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .....+...+.+.+.+.. .+..+++..|..|++.|++..
T Consensus       301 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~  339 (365)
T TIGR00900       301 FPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVF  339 (365)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHH
Confidence            222233333334333333 344448899999999998775

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.35  E-value=2.7e-07  Score=75.38  Aligned_cols=122  Identities=13%  Similarity=0.029  Sum_probs=84.7

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC--C--
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS--S--   86 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~--~--   86 (177)
                      .....-.+++.++++++..+ ..++.+...++..++.++.+++.||.|||+.+.++.++.+++.++.+.......  .  
T Consensus        50 g~~~~~l~~iek~F~lss~~-~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~  128 (633)
T TIGR00805        50 GLVNSSLTTIERRFKLSTSS-SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS  128 (633)
T ss_pred             HHHHhhchhhhhhhCCCCCc-ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence            33444456777889999888 888888899999999999999999999999999999999999887765431110  0  


Q ss_pred             -------------------C-------------Ccc-h--hHHHHHHHHHHHHhhhhccccccccceeeccccccccccc
Q 045175           87 -------------------A-------------SSS-E--VYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGI  131 (177)
Q Consensus        87 -------------------~-------------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~  131 (177)
                                         .             ... .  ...+..+++.+++.+.......+...+++.|.+|++.|+.
T Consensus       129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~  208 (633)
T TIGR00805       129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL  208 (633)
T ss_pred             ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence                               0             000 0  0122333333444434333444555599999999999998


Q ss_pred             hh
Q 045175          132 CG  133 (177)
Q Consensus       132 ~~  133 (177)
                      ..
T Consensus       209 ~~  210 (633)
T TIGR00805       209 YI  210 (633)
T ss_pred             HH
Confidence            76

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.34  E-value=5.4e-07  Score=72.44  Aligned_cols=102  Identities=21%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             hHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 045175           17 NPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWI   96 (177)
Q Consensus        17 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (177)
                      .+.+.++.|-++.  ..|+.....+...++.++.|.++|.+|||..++.+.++..++.+..+...           ....
T Consensus        67 l~~I~~diG~~~~--~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-----------~~~~  133 (599)
T PF06609_consen   67 LPYINADIGGSDN--WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-----------NMNT  133 (599)
T ss_pred             HHHHHHhcCCCcc--chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-----------cHHH
Confidence            3555677776654  55667777888899999999999999999999999999888887765432           1233


Q ss_pred             HHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           97 AVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+....+.+.+.  +.....+..++|+.|.+.|..+.
T Consensus       134 ~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~  168 (599)
T PF06609_consen  134 FIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGL  168 (599)
T ss_pred             HHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHh
Confidence            444455544433  33334446789999999998776

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.33  E-value=1.3e-06  Score=69.39  Aligned_cols=115  Identities=15%  Similarity=0.070  Sum_probs=75.9

Q ss_pred             chhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175            9 GINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA   87 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (177)
                      +.+...++.|.+++. .|.+..+ +........++..++.++.|++.||+|||+.+..+.++..++.+.+...   ....
T Consensus       274 ~~~~~~~~~~~~lq~v~g~s~~~-ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~~~  349 (495)
T PRK14995        274 TLVGFELLMAQELQFVHGLSPLE-AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT---DFST  349 (495)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cCCC
Confidence            344556677877754 6888887 7778888888899999999999999999998887777666555433321   1111


Q ss_pred             CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                           ..........+.+.+.+....+.. ....+..|++.|+.+.
T Consensus       350 -----~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~  389 (495)
T PRK14995        350 -----QQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAG  389 (495)
T ss_pred             -----chHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHH
Confidence                 022223333444444443333344 6677889999998876

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.30  E-value=2.1e-06  Score=65.71  Aligned_cols=118  Identities=14%  Similarity=0.150  Sum_probs=76.7

Q ss_pred             hhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc--CCchhhhHhhHHHHHHHHHHHHHHH
Q 045175            6 QFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF--GRKKLALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~   82 (177)
                      .+..-+++.-|.|.++ +..|++... +.+..+.+-.++++|++++||++||+  |||..+-..+.+.....++.  .. 
T Consensus       264 vYivR~gi~dW~p~YL~e~k~~s~~~-a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~--~w-  339 (448)
T COG2271         264 VYVVRYGINDWGPLYLSEVKGFSLVK-ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVL--YW-  339 (448)
T ss_pred             HHHHHHHHhhhHHHHHHHhcCCCHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH--HH-
Confidence            3444578889999999 556899888 88999999999999999999999995  78877654443333332221  11 


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..+..      +..+.....+..+++-.++..+.-....|..|++.-|++.
T Consensus       340 ~~~~~------~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~  384 (448)
T COG2271         340 LAPNG------SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTAT  384 (448)
T ss_pred             cCCCc------cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchh
Confidence            11111      2222222222223333444444447889999999988887

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.29  E-value=2.5e-06  Score=66.73  Aligned_cols=54  Identities=13%  Similarity=0.166  Sum_probs=42.2

Q ss_pred             hhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCch
Q 045175            7 FTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKK   61 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~   61 (177)
                      ....+....|.|.++++ .|++..+ +.+...+..+...++.+++|+++||++|++
T Consensus       264 ~~~~~~~~~~~p~~l~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       264 YLLRYGVLDWSPTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HHHHHHHHHhHHHHHHHccCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            34446677888999865 5888776 777777788888999999999999996543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.29  E-value=1.8e-06  Score=66.12  Aligned_cols=114  Identities=6%  Similarity=-0.039  Sum_probs=60.6

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc---hhhhH-hhHHHHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK---KLALS-SLTGVIISLVLLS   78 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr---~~~~~-~~~~~~~~~~~~~   78 (177)
                      .++.....+....|.|+++++.|++..  ......+..+.+.++   .++++||..||   +.... ...+.++......
T Consensus       201 ~~~~~~~~~~~~~wlp~~L~~~g~s~~--~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~  275 (368)
T TIGR00903       201 LGFGVALFDNLAIWLEAALRPAGLEDI--AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALA  275 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            345566778888999999987787643  333344444444444   57788887654   33222 2222222221111


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           79 WAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .    ..+       .........+.+.. .....+..+++.+|.+|++.|+++.
T Consensus       276 ~----~~~-------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~rgt~~  318 (368)
T TIGR00903       276 F----ELN-------RLALFAFIGIAGLL-MLPAYAIIMDWIGKFCDKELHGKAA  318 (368)
T ss_pred             H----ccc-------cHHHHHHHHHHHHh-hhhhHHHHHHHHHHhcchhhcCccc
Confidence            1    000       11222222222222 2222233458999999999999987

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.27  E-value=2.7e-06  Score=64.90  Aligned_cols=69  Identities=20%  Similarity=0.169  Sum_probs=52.6

Q ss_pred             chhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHH
Q 045175            9 GINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLS   78 (177)
Q Consensus         9 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   78 (177)
                      ..+....+.|.+. ++.|.++.+ .........++..++.++.+++.||+|||+.+..+..+..++.+...
T Consensus       221 ~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  290 (385)
T TIGR00710       221 GFFAFFSGAPFVYIDIMGVSPSV-FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE  290 (385)
T ss_pred             HHHHHHHcChHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            3445556677777 467888777 77777778888899999999999999999988877666666554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.26  E-value=2e-06  Score=65.18  Aligned_cols=116  Identities=16%  Similarity=0.122  Sum_probs=64.3

Q ss_pred             chhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC-CchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175            9 GINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG-RKKLALSSLTGVIISLVLLSWAFISGSS   86 (177)
Q Consensus         9 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-rr~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (177)
                      .......+.|.+. +..|.+..+ .........++..++.++.+++.||.. ||+..+. ........+...... ....
T Consensus       231 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~  307 (379)
T TIGR00881       231 VRTGILDWSPLYLTQEKGFSKEK-ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA-VFFMALIIVSLLVYW-LNPA  307 (379)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHHHHh-cCcc
Confidence            3455666778877 556888777 777778888889999999999999864 3333222 111111111111111 1001


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .     ......+.....+. ...+..+..+.+..|.+|++.|+++.
T Consensus       308 ~-----~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~  348 (379)
T TIGR00881       308 A-----NPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAA  348 (379)
T ss_pred             h-----hHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHH
Confidence            0     01122222222222 22233333346789999999999876

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.26  E-value=6e-07  Score=58.31  Aligned_cols=83  Identities=19%  Similarity=0.107  Sum_probs=55.4

Q ss_pred             HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccce
Q 045175           39 VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWT  118 (177)
Q Consensus        39 ~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (177)
                      ..++..++.++.+++.||+|||+.+..+.....++.+......           ......+...+.+...+. ..+..+.
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~-~~~~~~~   74 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----------NITVLIIARFLQGFGAAF-ALVAGAA   74 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHHH-HHHhHHH
Confidence            4566788999999999999999999888777776665443321           122233333333333332 2344458


Q ss_pred             eeccccccccccchh
Q 045175          119 VNSEVYREQYRGICG  133 (177)
Q Consensus       119 ~~~e~~p~~~R~~~~  133 (177)
                      +..|.+|++.|++..
T Consensus        75 ~~~~~~~~~~~~~~~   89 (141)
T TIGR00880        75 LIADIYPPEERGVAL   89 (141)
T ss_pred             HHHHHCChhhhhHHH
Confidence            899999999998776

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.25  E-value=1.6e-06  Score=68.31  Aligned_cols=99  Identities=15%  Similarity=0.016  Sum_probs=73.4

Q ss_pred             cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 045175           24 ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLAL  103 (177)
Q Consensus        24 ~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (177)
                      ++.+.++ ..++......+.+++.+.+|+++||+|-|+++..+.++.++..++.......         ..+..++.+.+
T Consensus        68 ~~ws~~~-k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~---------~~~~~~~~R~l  137 (466)
T KOG2532|consen   68 YDWSSTE-KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI---------GFYLLLVLRFL  137 (466)
T ss_pred             ecCCHHH-HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh---------cchhhHHHHHH
Confidence            4556666 6667777888899999999999999999999999999988888776665421         12233444444


Q ss_pred             Hhhhhccccccccceeeccccccccccchh
Q 045175          104 YITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+...+..+.... .+.....|+++|++..
T Consensus       138 qGl~~g~~~pa~~-~i~~~W~P~~Ers~~~  166 (466)
T KOG2532|consen  138 QGLGQGVLFPAIG-SILAKWAPPNERSTFI  166 (466)
T ss_pred             hHHHHhHHHhhhh-ceeeeECCHHHHHHHH
Confidence            4445555545555 8999999999999876

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.25  E-value=6.6e-06  Score=64.04  Aligned_cols=116  Identities=17%  Similarity=0.037  Sum_probs=68.6

Q ss_pred             hHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchh-hhHhhHHHHHHHHHHHHHHHhc
Q 045175           11 NTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKL-ALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus        11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      .....|.+.++ +..|++... ...+..+..+...+..++.|+++||    +||||. ++.+....+++.+++..   .+
T Consensus        16 ~~~~~~l~~~~~~~~g~s~~~-~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~---~~   91 (437)
T TIGR00792        16 AIVSTYLLFFYTDVLGLSAAF-VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT---TP   91 (437)
T ss_pred             HHHHHHHHHHHHHccCCCHHH-HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh---CC
Confidence            34444555555 678999888 8888888889999999999999998    677554 55666655555433322   11


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccc-cccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~  133 (177)
                      ... . ........+...++....+....+.. ++..|+.+ +++|++..
T Consensus        92 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~R~~~~  138 (437)
T TIGR00792        92 DFS-A-TGKLVYAYITYILLGLFYSFVNIPYW-SLVPAITLDPRERESLS  138 (437)
T ss_pred             CCC-c-chHHHHHHHHHHHHHHHHHhhcccHh-hCcccccCCHHHHHHHH
Confidence            111 0 01112222233333444443333333 78888874 57787654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK12382 putative transporter; Provisional

Probab=98.25  E-value=2.8e-06  Score=65.27  Aligned_cols=110  Identities=21%  Similarity=0.201  Sum_probs=68.7

Q ss_pred             chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175            9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      +......+.|.+.++.|.+.   .........++..++.++.+++.||+|||+.+..+..+.++..+.....     ++ 
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~~-  301 (392)
T PRK12382        231 GFAVIGTFVSLYFASKGWAM---AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----PT-  301 (392)
T ss_pred             HHhHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----cc-
Confidence            34455566777776666643   3334455666678899999999999999999888777776665443321     11 


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                           .....+...+.+.+.+....... +...|.+|++.|++..
T Consensus       302 -----~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~  340 (392)
T PRK12382        302 -----AWVALAGAALTGAGCSLIFPALG-VEVVKRVPSQVRGTAL  340 (392)
T ss_pred             -----HHHHHHHHHHHHHHHHhHHHHHH-HHHHHhcCHHHHHHHH
Confidence                 22233333333333332222233 6778889999999876

>TIGR00889 2A0110 nucleoside transporter

Probab=98.25  E-value=1.5e-06  Score=67.70  Aligned_cols=112  Identities=10%  Similarity=0.031  Sum_probs=69.7

Q ss_pred             HHHhhHHHHHHcCCCC--------chHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175           13 VMYYNPTIVQMASFQS--------NQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus        13 ~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      ...+.|.+.++.|.+.        +. ......+..+...++.++.++++||+|||++++.+.++.+++.......    
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~-~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~----  301 (418)
T TIGR00889       227 TNIFGNGFLHEFGRNPEFADSFVVKN-ASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG----  301 (418)
T ss_pred             HHHhHHHHHHHhcccccccchhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----
Confidence            3345566666666443        22 4566666777888999999999999999999998888777765444331    


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...   ........+...+.+...+....... .++.|.+|++.|+++.
T Consensus       302 ~~~---~~~~~~l~l~~~l~g~~~~~~~~~~~-~~i~~~~p~~~~g~~~  346 (418)
T TIGR00889       302 DPE---YFGYALLFLSMIVYGCAFDFFNISGS-VFVEKEVPVHIRASAQ  346 (418)
T ss_pred             Ccc---hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHH
Confidence            000   00011222233333333333323333 7889999999999886

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.24  E-value=2.8e-06  Score=64.64  Aligned_cols=61  Identities=20%  Similarity=0.274  Sum_probs=44.0

Q ss_pred             HHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175           13 VMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL   74 (177)
Q Consensus        13 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~   74 (177)
                      ...+.|.+. ++.|.+..+ .............++.++.+++.||+|||+.+..+.+...++.
T Consensus       218 ~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~  279 (375)
T TIGR00899       218 YIINMPLLIIHELGLPDKL-AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFY  279 (375)
T ss_pred             HHhhhHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            344556666 667888776 5556555566677888999999999999998877666544443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.24  E-value=4.1e-06  Score=65.07  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=54.2

Q ss_pred             hhhhhchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS   73 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~   73 (177)
                      +....+......+.|.+.+ ++|++..+ .....+...+...++.++.|+++||+|||+.++++..+.+++
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~-~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~   89 (420)
T PRK09528         20 FFFFFIWSSWFSFFPIWLHDINGLSGTD-TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL   89 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            3444445566777777774 48999888 888889999999999999999999999999987765554433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.23  E-value=3.9e-06  Score=72.84  Aligned_cols=110  Identities=16%  Similarity=0.012  Sum_probs=74.3

Q ss_pred             hHHHHhhHHHH-HHcCCCCc-hHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175           11 NTVMYYNPTIV-QMASFQSN-QLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus        11 ~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      .....+.|.+. +.+|.+.. . ..++.....++.+++.++.++++||+++|+.+.++.++.+++.+++....       
T Consensus       249 ~~~~~~~~~~~~~~~g~s~~~~-~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------  320 (1146)
T PRK08633        249 QLAQANFPAYAKEVLGLDNTFQ-VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP-------  320 (1146)
T ss_pred             HHHHHhhHHHHHHHhCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh-------
Confidence            34445566666 56788877 5 77777878888899999999999999999888877776666655444321       


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                          .....++...+++.+.+....+. +++..+..|++.|+++.
T Consensus       321 ----~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~  360 (1146)
T PRK08633        321 ----SLASVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVL  360 (1146)
T ss_pred             ----hHHHHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhh
Confidence                12223333334443333333333 48889999999999875

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.22  E-value=3e-06  Score=65.05  Aligned_cols=112  Identities=10%  Similarity=-0.117  Sum_probs=79.0

Q ss_pred             hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175            8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA   87 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (177)
                      .+......+.|.+.++.|.+... .........+..+++.++.+++.||+|+|+.+..+.+...+..+......      
T Consensus       219 ~~~~~~~~~~~~~l~~~g~s~~~-~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~------  291 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQAAGISASA-TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE------  291 (382)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHhH-HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh------
Confidence            33455556777777888998887 66666678888889999999999999999999988888888876654421      


Q ss_pred             CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                           ..+...+...+.+..++....... .++.+. |++.|+++.
T Consensus       292 -----~~~~~~~~q~l~g~~~~~~~~~~~-~~i~~~-~~~~~~~~q  330 (382)
T TIGR00902       292 -----AFPLIFLLQILHCGTFAVCHLAAM-RYIAAQ-PGSEIAKLQ  330 (382)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHH-HHHHhC-CHhhHHHHH
Confidence                 123334444555555555444444 677777 888887554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.21  E-value=4.4e-06  Score=72.60  Aligned_cols=93  Identities=12%  Similarity=0.054  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ..+...+..+...++.+++|+++||+|||+++.....+.++.......... ..        +...++...+..+.....
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-~~--------s~~~l~~~~~l~gi~~a~  124 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-LN--------SVPLLFAALFLMGIHSAL  124 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-Hh--------hHHHHHHHHHHHHHHHHh
Confidence            455566677888899999999999999999864422222222221111111 00        223344444444444445


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..+...+++.+++|++.|+.++
T Consensus       125 ~~p~~~a~l~~~~~~~~~~~a~  146 (1140)
T PRK06814        125 FGPIKYSILPDHLNKDELLGAN  146 (1140)
T ss_pred             hchHHHHhhHhhcCccccchhh
Confidence            5666669999999999999876

>PRK10504 putative transporter; Provisional

Probab=98.21  E-value=3e-06  Score=66.69  Aligned_cols=114  Identities=11%  Similarity=0.152  Sum_probs=71.6

Q ss_pred             hhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175           10 INTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus        10 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      ......+.|++.+ ..|.+... ..+......++..++.++.+++.||+|||+.+..+..+.++..+++...   .... 
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~-  351 (471)
T PRK10504        277 SGMLPFMTPVFLQIGLGFSPFH-AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV---ALLG-  351 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc---cccc-
Confidence            3444566788876 47877766 6667777777778888999999999999999888777666665443321   1111 


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                          ......+.....+.+.+....+.. .+..+..|++.|+.+.
T Consensus       352 ----~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~  391 (471)
T PRK10504        352 ----WYYLLPFVLFLQGMVNSTRFSSMN-TLTLKDLPDNLASSGN  391 (471)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHhccchH
Confidence                011112222222233333333333 7777889999998875

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.20  E-value=6.4e-06  Score=64.23  Aligned_cols=114  Identities=16%  Similarity=0.051  Sum_probs=70.7

Q ss_pred             HhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEec----ccCCchhhh-HhhHHHHHHHHHHHHHHHhcCCCC
Q 045175           15 YYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLID----HFGRKKLAL-SSLTGVIISLVLLSWAFISGSSAS   88 (177)
Q Consensus        15 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   88 (177)
                      .|.+.++ +..|++... ...+..+..+...+..++.|.++|    |+|||+.++ ++.+..+++.+++..   ..+.+.
T Consensus        22 ~~~~~f~~~~~gl~~~~-~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~---~~p~~~   97 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPAL-AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFS---PPPAGL   97 (428)
T ss_pred             HHHHHHHHHHcCCCHHH-HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhc---cccchh
Confidence            3444444 677999877 777777788888999999999999    799777654 566666665543332   111010


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccceeecccccc-ccccchh
Q 045175           89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYRE-QYRGICG  133 (177)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~  133 (177)
                      +......+..+...++...++....+.. ++.+|+.+. ++|....
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~t~~~i~~~-al~~~lt~~~~~R~~l~  142 (428)
T PF13347_consen   98 SFTAKLVWLFVFYILFDIAYTFVQIPYN-ALIPELTPDPDERTRLS  142 (428)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhccCchh-hcCccccccHhhhhhHH
Confidence            0011122234444555555555544444 899999985 5777665

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.18  E-value=4.6e-06  Score=65.18  Aligned_cols=47  Identities=6%  Similarity=-0.007  Sum_probs=38.8

Q ss_pred             hhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc
Q 045175           10 INTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF   57 (177)
Q Consensus        10 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~   57 (177)
                      .+....|.|.++ ++.|++..+ +........++..++.++.|+++||+
T Consensus       259 ~~~~~~~~p~~l~~~~g~s~~~-a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        259 RAAINDWGNLYMSETLGVDLVT-ANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            345566788888 567888877 77777888888999999999999998

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.18  E-value=5.2e-06  Score=63.67  Aligned_cols=64  Identities=14%  Similarity=0.120  Sum_probs=49.6

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHH
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLV   75 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   75 (177)
                      .....+.|.+.++.|.+.+. .........+...++.++.+++.||+|||+.+..+.....++.+
T Consensus       217 ~~~~~~lp~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~  280 (381)
T PRK03633        217 GSLYGLMPLYLNHQGMSDAS-IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSI  280 (381)
T ss_pred             HHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            34455678888778888776 66666677788899999999999999999988777666665543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.18  E-value=1.1e-05  Score=61.86  Aligned_cols=62  Identities=11%  Similarity=0.233  Sum_probs=48.2

Q ss_pred             HHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175           14 MYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL   76 (177)
Q Consensus        14 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~   76 (177)
                      ..|.+.+. +..|.+..+ .........++..++.++.+++.||+|||+.+..+..+.++..+.
T Consensus       219 ~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~  281 (382)
T PRK10091        219 FSYIKPYMMFISGFSETS-MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLM  281 (382)
T ss_pred             HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHH
Confidence            34445455 557888877 777778888889999999999999999999988777766665543

>TIGR00896 CynX cyanate transporter

Probab=98.17  E-value=6.1e-06  Score=62.58  Aligned_cols=69  Identities=12%  Similarity=0.026  Sum_probs=51.8

Q ss_pred             hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC-CchhhhHhhHHHHHHHHHH
Q 045175            8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG-RKKLALSSLTGVIISLVLL   77 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-rr~~~~~~~~~~~~~~~~~   77 (177)
                      ...+....|.|.+.++.|.+..+ .........++..++.++.|++.||++ ||+.+..+..+.+++.+..
T Consensus       211 ~~~~~~~~~lp~~~~~~g~~~~~-~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  280 (355)
T TIGR00896       211 GLYYSLIGWLPAILISHGASAAT-AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL  280 (355)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence            34455667889888888888777 777778888899999999999999994 5666666666555554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03699 putative transporter; Provisional

Probab=98.17  E-value=3.3e-06  Score=65.10  Aligned_cols=65  Identities=12%  Similarity=0.063  Sum_probs=51.3

Q ss_pred             hchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH
Q 045175            8 TGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS   73 (177)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~   73 (177)
                      .+.+....|.|.+. +..|++..+ .........++..++.++.++++||++||+.+.....+..+.
T Consensus       219 ~~~~~~~~~~p~~l~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        219 LAQLTFISWVPEYAQKKFGMSLED-AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHH-hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence            34456678899998 557998877 777777778888999999999999999999887666554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.16  E-value=4.1e-06  Score=66.58  Aligned_cols=116  Identities=11%  Similarity=0.026  Sum_probs=68.0

Q ss_pred             hhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-----CCchh-hhHhhHHHHHHHHHHHH
Q 045175            6 QFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-----GRKKL-ALSSLTGVIISLVLLSW   79 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~   79 (177)
                      +-..........|.+.++.|.+.++ ......+ ... .++.+++++++||+     |||+. ++.+.+..+++....+.
T Consensus        24 ~gl~~~~~~~~l~~~l~~~g~~~~~-ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~  100 (491)
T PRK11010         24 SGLPLALTSGTLQAWMTVENIDLKT-IGFFSLV-GQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGF  100 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHH-HHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            3444455566678888888888776 4443222 222 36899999999999     99886 55666655555544333


Q ss_pred             HHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           80 AFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..   +..     ......+...+.+...+ ...+...++..|.+|+++|+.+.
T Consensus       101 ~~---~~~-----~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~  145 (491)
T PRK11010        101 LE---PGT-----QLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGA  145 (491)
T ss_pred             cC---Ccc-----hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHH
Confidence            21   111     01122222233333222 33444458999999999999765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.15  E-value=6e-06  Score=62.98  Aligned_cols=66  Identities=14%  Similarity=0.022  Sum_probs=49.5

Q ss_pred             hchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175            8 TGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL   74 (177)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~   74 (177)
                      .+.+....+.|.+. +..|.+..+ .........++..++.++.+++.||+|||+.+..+.....+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~  274 (377)
T PRK11102        208 AGMFSFLTAGPFVYIELNGVSPQN-FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMG  274 (377)
T ss_pred             HHHHHHHHcCHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            33444455566666 557888777 7777778888899999999999999999999887776544433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.11  E-value=7.7e-06  Score=62.71  Aligned_cols=117  Identities=20%  Similarity=0.172  Sum_probs=80.0

Q ss_pred             hhhhhchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~   82 (177)
                      +...-|++.+......+-. .+|++..+ ........++.+++|++++|++.||+|.|+++..+.++..+..+...... 
T Consensus       262 ~~~~DGv~til~~~~~fg~~~~gls~~~-lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~-  339 (438)
T COG2270         262 FFYIDGVNTILAMGGVFGAADLGLSSTE-LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE-  339 (438)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHcCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-
Confidence            3445567777777777774 78999888 88888889999999999999999999999998888777766654433321 


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                              .  .....++..+.+...+.. .+..=+|.+++.|+++-+...
T Consensus       340 --------~--~~~f~i~gll~g~s~G~~-qA~SRSy~~~lvp~~k~~~fF  379 (438)
T COG2270         340 --------G--ELDFWILGLLVGTSLGGA-QASSRSYLARLVPKGKEGRFF  379 (438)
T ss_pred             --------c--cHHHHHHHHHHHHhcchH-HHHHHHHHHHhCCCcccccee
Confidence                    1  111222223333333333 333338999999988765443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.09  E-value=1.5e-06  Score=68.62  Aligned_cols=95  Identities=14%  Similarity=-0.048  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ......+..++.+++.+++++++||+|+|+.+..+..+.+++.+....... ...+     .....++...+.+.+.+. 
T Consensus       268 ~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~i~~~l~g~~~~~-  340 (473)
T PRK10429        268 FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL-AAPH-----NALLIVIAGILLNIGTAL-  340 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-cCch-----hHHHHHHHHHHHHHHHHH-
Confidence            344555556778899999999999999999988777665555433322111 1111     122222222333333332 


Q ss_pred             cccccceeeccccc-----cccccchh
Q 045175          112 MGPVPWTVNSEVYR-----EQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p-----~~~R~~~~  133 (177)
                      ..+..+++.+|..+     +..|..+.
T Consensus       341 ~~~~~~am~ad~id~~e~~tG~R~~G~  367 (473)
T PRK10429        341 FWVLQVIMVADTVDYGEYKLGIRCESI  367 (473)
T ss_pred             HHHHHHHHHhhhhhhhhHhcCccchhH
Confidence            23445578888844     55565554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.08  E-value=2.4e-06  Score=64.23  Aligned_cols=115  Identities=22%  Similarity=0.240  Sum_probs=75.7

Q ss_pred             chhHHHHhhHHHH-HHcCCC-CchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175            9 GINTVMYYNPTIV-QMASFQ-SNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS   86 (177)
Q Consensus         9 ~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (177)
                      .......+.|.+. +..|.+ ..+ ......+..+...++.++.+++.||+|+|+..........+..+........   
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  296 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQ-AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS---  296 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH---
T ss_pred             HHHHhhcccchhhhhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            4455777888874 777888 455 6667777888888999999999999999888777666666555444332211   


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                           .......+...+.+.+.+.. .+....+..|..|++.|++..
T Consensus       297 -----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~  337 (352)
T PF07690_consen  297 -----SSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAF  337 (352)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHH
T ss_pred             -----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHH
Confidence                 01222333333444433333 344448999999999998765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.06  E-value=5.8e-06  Score=65.41  Aligned_cols=125  Identities=19%  Similarity=0.227  Sum_probs=78.3

Q ss_pred             hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc--hhhhHhhHHHHHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK--KLALSSLTGVIISLVLLSWA   80 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~   80 (177)
                      +....|.+.+......+. +.+|++..+ ......+..+.+.+|+++++++.||+|.|  ++++...++..+..+....-
T Consensus       291 ~l~~dg~~ti~~~~~i~a~~~lg~s~~~-l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G  369 (477)
T PF11700_consen  291 FLYSDGVNTIISFAGIYATEVLGMSTTQ-LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFG  369 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            444456677777777777 578999988 77888888999999999999999999998  77666665553333221110


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ......+.. +  .+...+...+.+...+ +..+..-++.+|+.|+...+...
T Consensus       370 ~~~~~~g~~-~--~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efF  418 (477)
T PF11700_consen  370 FWPSFFGLK-S--PWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFF  418 (477)
T ss_pred             hhhcccCcc-c--HHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHH
Confidence            000010100 1  2222222333333333 34455558999999998887554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.04  E-value=1.1e-05  Score=62.71  Aligned_cols=89  Identities=11%  Similarity=-0.071  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ......+..++..++.+++|++.||+|||+.+..+.++.++..++.....           ..+...+...+.+...+..
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-----------~~~~~~~~~~l~g~~~~~~  332 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-----------GPLEVSILKLLHAFEVPFL  332 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHHHHHH
Confidence            45566666777789999999999999999998887777666655444311           0222222222322222222


Q ss_pred             cccccceeeccccccccccch
Q 045175          112 MGPVPWTVNSEVYREQYRGIC  132 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~  132 (177)
                      .. ....+..|.+|++.|++.
T Consensus       333 ~~-~~~~~~~~~~~~~~~a~~  352 (420)
T PRK09528        333 LV-GVFKYITLNFDVRLSATI  352 (420)
T ss_pred             HH-HHHHHHHHHcCccceeee
Confidence            22 223678888999988864

>PRK03545 putative arabinose transporter; Provisional

Probab=98.04  E-value=1.7e-05  Score=60.95  Aligned_cols=52  Identities=27%  Similarity=0.305  Sum_probs=39.7

Q ss_pred             HHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhh
Q 045175           12 TVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLAL   64 (177)
Q Consensus        12 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~   64 (177)
                      ....+.+.+. +..|.+.++ .........++..++.++.++++||+|||...+
T Consensus       223 ~~~~~~~~~l~~~~g~s~~~-~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~  275 (390)
T PRK03545        223 TAYSYIEPFVQQVAGLSENF-ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI  275 (390)
T ss_pred             HHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence            3344555555 446888877 777777788889999999999999999886543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.00  E-value=5.4e-05  Score=59.93  Aligned_cols=116  Identities=14%  Similarity=0.060  Sum_probs=69.8

Q ss_pred             hHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEec----ccCCch-hhhHhhHHHHHHHHHHHHHHHhc
Q 045175           11 NTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLID----HFGRKK-LALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus        11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~-~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      .....|.+.++ +..|++... ...+..+..+...+..++.|+++|    |+|||+ .++.+.+..+++..++   +..+
T Consensus        23 ~~~~~~l~~yyt~v~Gls~~~-vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll---f~~p   98 (473)
T PRK10429         23 GIVYMYLMYYYTDVVGLSVGL-VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL---FSAH   98 (473)
T ss_pred             HHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH---HcCC
Confidence            44455666666 556999887 777788888888999999999999    569854 4555666555554322   2111


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccc-ccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVY-REQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~  133 (177)
                      ..+  ......+..+...++..+++....|.. ++..|+. +.++|....
T Consensus        99 ~~~--~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~lt~~~~eR~~l~  145 (473)
T PRK10429         99 LFE--GTAQYVFVCVTYILWGMTYTIMDIPFW-SLVPTLTLDKREREQLV  145 (473)
T ss_pred             CCC--ccHHHHHHHHHHHHHHHHHHHHcchHH-hhhHHhCCCHHHHHHHH
Confidence            111  111122233333444444444444444 8889988 467787644

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.99  E-value=9e-06  Score=65.01  Aligned_cols=115  Identities=20%  Similarity=0.203  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      .............+.....+...|++|||..+..+.+...++.+..+.......        .....+...+...+.+.+
T Consensus       352 ~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  423 (521)
T KOG0255|consen  352 IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG--------GWLHWILPLLGKFFIGSA  423 (521)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch--------hHHHHHHHHHHHHHHHHH
Confidence            334444555577888888899999999999999999998888877766432111        012233333333444445


Q ss_pred             cccccceeeccccccccccchh----------------------------------------eeeeeEEeecCCCCCHHH
Q 045175          112 MGPVPWTVNSEVYREQYRGICG----------------------------------------VVFVILFVPETQGLTFLE  151 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~----------------------------------------~~~~~~~~pet~~~~~~~  151 (177)
                      +... +.+.+|++|+..|+.+.                                        +++...++|||+++.+.+
T Consensus       424 ~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~  502 (521)
T KOG0255|consen  424 FNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG  502 (521)
T ss_pred             HHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence            5555 48999999999999887                                        334458899999998865


Q ss_pred             HHHH
Q 045175          152 VEHM  155 (177)
Q Consensus       152 ~~~~  155 (177)
                      ..++
T Consensus       503 t~~~  506 (521)
T KOG0255|consen  503 TLLD  506 (521)
T ss_pred             hHHH
Confidence            4443

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.97  E-value=2.3e-05  Score=60.41  Aligned_cols=62  Identities=6%  Similarity=-0.106  Sum_probs=38.4

Q ss_pred             hHHHHhhHHHH-HHcCCCCchHHHHHHHHH-HHHHHhhhhhheeEecccCCchhhh-HhhHHHHHHH
Q 045175           11 NTVMYYNPTIV-QMASFQSNQLALLLSLAV-AGTNAVGTIIGIYLIDHFGRKKLAL-SSLTGVIISL   74 (177)
Q Consensus        11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-~~~~~i~~~~~g~l~d~~grr~~~~-~~~~~~~~~~   74 (177)
                      .....+.|.+. +++|.+..+ ........ .....++.+.+++ +||+|||+.++ .+.+...+..
T Consensus        32 ~~~~p~~~~~l~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~   96 (393)
T PRK15011         32 ALQTPTLSIFLTDEVHARPAM-VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC   96 (393)
T ss_pred             HHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence            44455566655 678988887 55554443 3445566666667 99999998754 4444433433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=9.4e-06  Score=61.86  Aligned_cols=90  Identities=17%  Similarity=0.074  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ..++.....+.+++..++.|.+.||+|+|..++++.+.+....+++++..            .+.++...+..++.....
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~------------sy~~l~vAR~LQgvgsA~  175 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN------------SYPMLFVARSLQGVGSAF  175 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc------------hhHHHHHHHHHhhhhHHH
Confidence            67788888999999999999999999999999999999999988877742            444555555555544444


Q ss_pred             cccccceeecccccccc-ccchh
Q 045175          112 MGPVPWTVNSEVYREQY-RGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~-R~~~~  133 (177)
                      ......+++++.||++. |+.++
T Consensus       176 ~~tsglamlAd~f~~d~er~~vm  198 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVM  198 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHH
Confidence            44444489999999875 68776

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.95  E-value=2.9e-05  Score=62.18  Aligned_cols=95  Identities=16%  Similarity=0.121  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ...+.....+..++.++++|.++||++||++++.+.++..+..+.+.........+      .+..++..++ .+.....
T Consensus        47 valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~------~~~Ll~~~fl-~g~~~a~  119 (524)
T PF05977_consen   47 VALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLS------PWLLLILTFL-LGIGSAF  119 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCC------HHHHHHHHHH-HHHHHHH
Confidence            45556666777788999999999999999999998888776665555433222111      2233333333 3333444


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..|..++++.|+.|++.-..++
T Consensus       120 ~~PA~~A~ip~lV~~~~L~~A~  141 (524)
T PF05977_consen  120 FNPAWQAIIPELVPKEDLPAAN  141 (524)
T ss_pred             HHHHHHHHHHHhccHhhHHHHH
Confidence            4566669999999998765554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.94  E-value=2.1e-05  Score=60.45  Aligned_cols=67  Identities=15%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             HHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175           12 TVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW   79 (177)
Q Consensus        12 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   79 (177)
                      ....+.|.+. ++.|++..+ .........++.+++.++.+++.||+|||+.+..+.++..+..+....
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  288 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGE-YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL  288 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666 567888776 666777778888999999999999999999988887776666554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.93  E-value=4.2e-05  Score=59.72  Aligned_cols=110  Identities=17%  Similarity=0.217  Sum_probs=73.0

Q ss_pred             hhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            6 QFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      +..+......+.+++.+. .|.+ +. ......+..+...++.+++++++||+|+|+.+..+.++.+++.+.......  
T Consensus       237 ~~~~~~~~~~~~~y~~~~vl~~~-~~-~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~--  312 (428)
T PF13347_consen  237 QWLAFALMNTFLPYYFTYVLGNE-GL-ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP--  312 (428)
T ss_pred             HHhhhhhhhhHHHHHHHHHhcCc-hh-hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--
Confidence            344444455555666644 3444 33 556666778888999999999999999999999999988888766554321  


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccc
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQ  127 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  127 (177)
                             .......+...+.+.+.+. ....++++.+|+.+..
T Consensus       313 -------~~~~~~~i~~~l~gi~~~~-~~~~~~a~~ad~id~~  347 (428)
T PF13347_consen  313 -------GSPWLVLILFILAGIGYGA-FFVIPWAMLADVIDYD  347 (428)
T ss_pred             -------hhHHHHHHHHHHhHhhhcc-cccccccccccchhhH
Confidence                   1133444444454444443 3466679999998754

>PRK09669 putative symporter YagG; Provisional

Probab=97.92  E-value=8.8e-05  Score=58.17  Aligned_cols=114  Identities=15%  Similarity=0.048  Sum_probs=68.3

Q ss_pred             HHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchh-hhHhhHHHHHHHHHHHHHHHhcC
Q 045175           12 TVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKL-ALSSLTGVIISLVLLSWAFISGS   85 (177)
Q Consensus        12 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~~~   85 (177)
                      ....|.+.++ +..|++... ...+..+..+...+..++.|+++||    +|||+. ++.+.+..+++.++.   +..+.
T Consensus        27 ~~~~~l~~~~t~~~gls~~~-~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~---f~~p~  102 (444)
T PRK09669         27 TVMLFLAYFYTDVFGLSAAI-MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT---FYTPD  102 (444)
T ss_pred             HHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH---HhCCC
Confidence            3345555665 678999887 7888888888899999999999998    777555 445555555554322   22221


Q ss_pred             CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccc-cccccch
Q 045175           86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGIC  132 (177)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~  132 (177)
                       .+ ......+..+...++...++....|.. ++.+|+.+ .++|++.
T Consensus       103 -~~-~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~~t~~~~eR~~l  147 (444)
T PRK09669        103 -FG-ATGKIIYACVTYILLSLVYTAINVPYC-AMPGAITNDPRERHSL  147 (444)
T ss_pred             -CC-cchHHHHHHHHHHHHHHHHHhhcchHH-HhHHHhcCCHHHHHHH
Confidence             11 011122333333344444444333444 88889874 4667754

>PRK11043 putative transporter; Provisional

Probab=97.90  E-value=4.5e-05  Score=58.82  Aligned_cols=64  Identities=14%  Similarity=0.079  Sum_probs=46.6

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHH
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLV   75 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   75 (177)
                      +....+.|.+.++.|.+..+ .........++..+|.++.+++.||+|||+......+...++.+
T Consensus       220 ~~~~~~~p~~~~~~g~s~~~-~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~  283 (401)
T PRK11043        220 FAWLTGSPFILEQMGYSPAD-IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVI  283 (401)
T ss_pred             HHHHHHhHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            44556678888878888776 55555666677788999999999999999876655555444443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.90  E-value=2.6e-05  Score=59.91  Aligned_cols=56  Identities=11%  Similarity=0.062  Sum_probs=46.2

Q ss_pred             hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc
Q 045175            4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK   60 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr   60 (177)
                      +..+.+......+.|.+.++.|.+..+ ..+......+...++.++.|+++||+|||
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~-iG~~~~~~~l~~~l~~~~~g~l~dr~g~~   69 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKGQGYTPET-IGLLLGAGLVARFLGSLLIAPRVKDPSQL   69 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCCHHH-HHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence            344455566667778888889999888 88888888899999999999999999995

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.90  E-value=3.2e-05  Score=61.58  Aligned_cols=60  Identities=15%  Similarity=0.078  Sum_probs=43.7

Q ss_pred             HHhhHHHH-HHcCCCCchHHHHHH-HHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175           14 MYYNPTIV-QMASFQSNQLALLLS-LAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL   74 (177)
Q Consensus        14 ~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~   74 (177)
                      ..+.+.++ +..|++..+ ..... ....++.++|.+++|+++||+|||+.+..+.++..+..
T Consensus       242 ~~~~~~~l~~~~G~s~~~-~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        242 MSLTTTFLIRGVGFDAGE-VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34555555 668998887 55554 45567889999999999999999888776555545444

>TIGR00889 2A0110 nucleoside transporter

Probab=97.89  E-value=6.3e-05  Score=58.63  Aligned_cols=72  Identities=10%  Similarity=0.009  Sum_probs=53.2

Q ss_pred             hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVIISLVL   76 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~   76 (177)
                      +..+........+.+.++ ++.|++..+ ..++.....++..++.+++|.++||+|| |+.+..+.++..+....
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~-iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889        12 FLQWFIWGSWLVTLGSYMSKTLHFSGAE-IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            444555555555566666 668999888 8889999999999999999999999965 66766666655454433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.87  E-value=4.8e-05  Score=60.72  Aligned_cols=106  Identities=13%  Similarity=0.053  Sum_probs=75.2

Q ss_pred             HhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 045175           15 YYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYG   94 (177)
Q Consensus        15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (177)
                      .+.+.+.++++.+.++ ..|+..+...+..+..++.+.+.||+|.|.+.+.+.++..++.++..+..          ...
T Consensus        67 v~~~~~~~~f~~s~~~-~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~----------~i~  135 (509)
T KOG2504|consen   67 LLFEELMDYFGSSSSQ-IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT----------SLW  135 (509)
T ss_pred             hhHHHHHHHhCCCccH-HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh----------hHH
Confidence            4456667788888887 78888888888899999999999999999999999999999887776643          112


Q ss_pred             HHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           95 WIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...+....+.+.+++..+.|.. .++. .+.++.|+.++
T Consensus       136 ~l~lt~gvi~G~G~~~~~~pai-viv~-~YF~kkR~lA~  172 (509)
T KOG2504|consen  136 QLYLTFGVIGGLGLGLIYLPAV-VILG-TYFEKKRALAT  172 (509)
T ss_pred             HHHHHHHHHhhccchhhhcchh-hhhh-hHhHHHHHHHH
Confidence            2233333444444455555555 4555 45567777666

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.84  E-value=7.2e-05  Score=57.84  Aligned_cols=65  Identities=20%  Similarity=0.203  Sum_probs=47.0

Q ss_pred             HHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175           14 MYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW   79 (177)
Q Consensus        14 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   79 (177)
                      ..+.|.++ +..|.+..+ .........++..++.++.++++||+|||+.+..+.+...++.++...
T Consensus       235 ~~~~p~~~~~~~g~~~~~-~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        235 IALSPVILISGEQLSSYE-YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             HHHhHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            34467776 557887766 555555566677899999999999999999888777766655544443

>TIGR01272 gluP glucose/galactose transporter

Probab=97.82  E-value=3.4e-05  Score=57.76  Aligned_cols=64  Identities=11%  Similarity=0.067  Sum_probs=50.6

Q ss_pred             hhHHHHhhHHHHHH---cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175           10 INTVMYYNPTIVQM---ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL   74 (177)
Q Consensus        10 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~   74 (177)
                      -..+..|.+.+.++   .|++.++ ..........+.++|.++.+++.||+|+|+.+.++.++..++.
T Consensus       156 e~~~~~w~~~yl~~~~~~g~s~~~-a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~  222 (310)
T TIGR01272       156 EVSAGSFLVNFLSDPHALGLPEDQ-AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLS  222 (310)
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            34566778888853   4788777 7777888888999999999999999999988877766666554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10133 L-fucose transporter; Provisional

Probab=97.82  E-value=3.1e-05  Score=60.73  Aligned_cols=63  Identities=13%  Similarity=0.106  Sum_probs=48.5

Q ss_pred             hHHHHhhHHHH-H-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175           11 NTVMYYNPTIV-Q-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL   74 (177)
Q Consensus        11 ~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~   74 (177)
                      .....|.+.+. + ..|++..+ .........++..+|.++++++.||+|||+++..+.++..+..
T Consensus       275 ~~~~~~~~~~l~~~~~g~s~~~-ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        275 TACWSYLIRYAVEEIPGMTAGF-AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            33445666664 4 46888887 7778888888999999999999999999999877766655444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.82  E-value=0.00014  Score=55.87  Aligned_cols=74  Identities=23%  Similarity=0.385  Sum_probs=57.5

Q ss_pred             hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW   79 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   79 (177)
                      +..+.|.+....|.-.++ +..|++.+. ..+....++++..+|..++|+++|| +.|+.+.....+..+..+.+..
T Consensus       221 ~l~~~g~F~~ftYi~P~L~~v~g~s~~~-vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~  295 (394)
T COG2814         221 FLFMTGHFALYTYIRPFLESVAGFSVSA-VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF  295 (394)
T ss_pred             HHHHcchhhhHHhHHHHHHHccCCCHhH-HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH
Confidence            445666677667765555 667898888 8888888999999999999999999 8888888777777666655443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.78  E-value=6.7e-05  Score=58.76  Aligned_cols=109  Identities=20%  Similarity=0.108  Sum_probs=68.8

Q ss_pred             chhHHHHhhHHHH-HHcC----CCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175            9 GINTVMYYNPTIV-QMAS----FQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         9 ~~~~~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~   82 (177)
                      ++|++-.-+..|+ .+.+    +++++ +......+...--...+++||++|| +|+|+..+.+.++..++-++++... 
T Consensus        36 syYGmraiL~~Yl~~~~~~gLg~~~~~-A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~-  113 (498)
T COG3104          36 SYYGMRAILILYLYYQLGDGLGFDETH-ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS-  113 (498)
T ss_pred             hhhhhHHHHHHHHHHhccccCCcChHh-hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-
Confidence            4455444444444 5555    88888 6666655555556889999999999 7999999999999998887766531 


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccc
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQY  128 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  128 (177)
                        ..      ......+.+.+...+.+ ..-+..-.+..|++|++.
T Consensus       114 --~~------~~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~D  150 (498)
T COG3104         114 --VS------GPGGLYIGLALIIVGTG-LFKPNISSLLGELYPKDD  150 (498)
T ss_pred             --cc------cccHHHHHHHHHHhccc-cccccHHHHHHHhcCCCC
Confidence              00      01122333333333333 333433389999998753

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.77  E-value=8.5e-05  Score=56.06  Aligned_cols=57  Identities=23%  Similarity=0.176  Sum_probs=47.2

Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175           19 TIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL   76 (177)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~   76 (177)
                      .+++++|+++.+ ...+.....+...+...+.|.++||+|||+..+..+++.+++++.
T Consensus        59 ~LY~~yg~~~~q-Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~  115 (354)
T PF05631_consen   59 ALYESYGFSEHQ-IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT  115 (354)
T ss_pred             HHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            334678999888 666777778888999999999999999999999888888877653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.77  E-value=9.4e-05  Score=57.00  Aligned_cols=87  Identities=15%  Similarity=-0.057  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccccc
Q 045175           35 LSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGP  114 (177)
Q Consensus        35 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (177)
                      ...+..++..++.+..|+++||+|||+.+..+.....++.+......           ......+...+.+.+.+.. .+
T Consensus       263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~-~~  330 (408)
T PRK09874        263 IASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-----------TPLQLGILRFLLGAADGAL-LP  330 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHhhhHhh-HH
Confidence            33445566778888999999999999998877776655544332210           0222222233333333322 22


Q ss_pred             ccceeeccccccccccchh
Q 045175          115 VPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       115 ~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...++..+..|++.|++..
T Consensus       331 ~~~~~~~~~~~~~~~g~~~  349 (408)
T PRK09874        331 AVQTLLVYNSSNQIAGRIF  349 (408)
T ss_pred             HHHHHHHHhCCcccceeee
Confidence            2325667778888877764

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.77  E-value=6.5e-05  Score=57.74  Aligned_cols=59  Identities=17%  Similarity=0.115  Sum_probs=47.9

Q ss_pred             hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhh
Q 045175            4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA   63 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~   63 (177)
                      +..+.+......+.|.+.++.|++..+ .........+...++.+++++++||+|||...
T Consensus        14 ~~~~~~~~~~~p~l~~~l~~~g~s~~~-ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~   72 (382)
T TIGR00902        14 FGYFCAYGIFLPFFPAWLKGIGLGEEM-IGLLIGAALIARFAGGLFFAPLIKDANHIIIA   72 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            444455566677888999999999888 88888888888999999999999999986543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.75  E-value=7.9e-05  Score=57.80  Aligned_cols=71  Identities=18%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVIISL   74 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~   74 (177)
                      .+.++........|.|.++++.|++..+ ...+.++..+..+++.+++|+++||.++ |+.+.+..++.++..
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~q-IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~   82 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLESRGFSGTQ-IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL   82 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            4566777778888899999999999888 8888998999999999999999999864 555555444444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.75  E-value=6.5e-05  Score=57.70  Aligned_cols=65  Identities=12%  Similarity=0.047  Sum_probs=49.4

Q ss_pred             HHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHH
Q 045175           12 TVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLL   77 (177)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   77 (177)
                      ....+.|.+.++.|.+..+ .........+...++.++.+++.||+|+|+.+..+.+..++..+..
T Consensus       223 ~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~  287 (382)
T PRK11128        223 AYYGFSAIYWQAAGYSAST-IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLM  287 (382)
T ss_pred             hHHHHHHHHHHHCCCCHhH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            3455666777778888776 5556666677788888999999999999999888877777665444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.75  E-value=0.00012  Score=57.69  Aligned_cols=57  Identities=23%  Similarity=0.191  Sum_probs=45.4

Q ss_pred             hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCch
Q 045175            4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKK   61 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~   61 (177)
                      +....+.+....|.|.++ +..|.+..+ ......+..++..++.+++|+++||+++|+
T Consensus       271 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~  328 (465)
T TIGR00894       271 FGHFWLYTILPTYLPTFISWVLRVSGKE-NGLLSSLPYLFAWLCSIFAGYLADFLKSSK  328 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcChHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            445556677778999998 557888877 777888888889999999999999986553

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.71  E-value=8.4e-05  Score=64.82  Aligned_cols=121  Identities=16%  Similarity=-0.001  Sum_probs=72.7

Q ss_pred             hHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHh-cCCCC
Q 045175           11 NTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFIS-GSSAS   88 (177)
Q Consensus        11 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   88 (177)
                      .....+.|.+.+ .+|.+... ..++.....++..+|.++.++++|+.++++.+..+.++.+++.+.+...... .....
T Consensus       242 ~~~~~~~p~~~~~~~g~~~~~-~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (1140)
T PRK06814        242 AVVLSQLPLLAKETLGGDENV-ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPA  320 (1140)
T ss_pred             HHHHHHhHHHHHHHcCCchHH-HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccc
Confidence            455567788884 46888776 7777888889999999999999998887776655555555444333221000 00000


Q ss_pred             -c-------chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           89 -S-------SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        89 -~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                       .       .....+...+...+++.+.+....+.. ++..+..|++.||+..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~G~v~  372 (1140)
T PRK06814        321 QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF-AALQAWANPAHRARVI  372 (1140)
T ss_pred             cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH-HHHHhhCCcccceeee
Confidence             0       000122233333344444333333444 8999999999999876

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.70  E-value=3.2e-05  Score=60.24  Aligned_cols=46  Identities=15%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHH
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLL   77 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   77 (177)
                      ......+..++.+++.+++++++||+|||+.+..+.++.+++.+..
T Consensus       259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~  304 (437)
T TIGR00792       259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF  304 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            4455566678889999999999999999999888877766665443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.66  E-value=0.00011  Score=56.44  Aligned_cols=61  Identities=13%  Similarity=-0.042  Sum_probs=43.7

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHH-HHHHhhhhhheeEecccCCchhhhHhhHHHHH
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVA-GTNAVGTIIGIYLIDHFGRKKLALSSLTGVII   72 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~   72 (177)
                      .....+.+.+.++.|++.++ ......... ....++.+++|++.||+|+|+.+..+..+.++
T Consensus       225 ~~~~~~~~~~l~~~G~s~~~-ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       225 VSGFGLSKLYLVDAGWPLEW-IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS  286 (390)
T ss_pred             HHHHHHhhHHHHhcCCCHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33444566667778998887 555555444 45677889999999999999998876665533

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.60  E-value=4.4e-05  Score=60.93  Aligned_cols=70  Identities=24%  Similarity=0.290  Sum_probs=52.8

Q ss_pred             hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchh--hhHhhHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKL--ALSSLTGVIISL   74 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~--~~~~~~~~~~~~   74 (177)
                      .....+.+.-..+.|.+.++.|.++.+ +.....+.++...++.++.|+++|+...|+.  ...+.+..+++.
T Consensus       308 ~~~~~g~~~p~~~l~~~~~~~g~~~~~-aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~  379 (509)
T KOG2504|consen  308 LFAYLGFNVPFVYLPSYAKSLGLSSND-AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR  379 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChhh-hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence            344556677777888888889999998 7778888899999999999999999884443  344444444444

>PRK09848 glucuronide transporter; Provisional

Probab=97.59  E-value=0.00087  Score=52.63  Aligned_cols=60  Identities=15%  Similarity=0.113  Sum_probs=43.5

Q ss_pred             HHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc----CCchhh-hHhhHHHHHH
Q 045175           13 VMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF----GRKKLA-LSSLTGVIIS   73 (177)
Q Consensus        13 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----grr~~~-~~~~~~~~~~   73 (177)
                      ...|.+.++ +..|++..+ ...+..+..+...+..++.|+++||.    |||+.+ +++.+...+.
T Consensus        27 ~~~~l~~y~~~~~gl~~~~-~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~   92 (448)
T PRK09848         27 GALFLLSYYTDVAGVGAAA-AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF   92 (448)
T ss_pred             HHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence            334454555 556998887 88888888999999999999999996    777755 4444444433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.59  E-value=0.00036  Score=53.71  Aligned_cols=64  Identities=13%  Similarity=-0.013  Sum_probs=47.9

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHH--HHHHHHHHHhhhhhh-eeEecccCCchhhhHhh
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLL--SLAVAGTNAVGTIIG-IYLIDHFGRKKLALSSL   67 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~i~~~~~-g~l~d~~grr~~~~~~~   67 (177)
                      ++.|-........+.|.++++.|.+.++ ....  ..+..+...+.+++. ++..||+|||+.++...
T Consensus        10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~-iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718        10 YLSQGIPIGLAMDALPTLLREDGAPLTA-LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            3455556677778899999999999887 5554  345577777888888 56899999999875544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.56  E-value=0.00037  Score=55.44  Aligned_cols=96  Identities=18%  Similarity=-0.066  Sum_probs=63.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 045175           25 SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALY  104 (177)
Q Consensus        25 g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (177)
                      +...++ -....+++.++.+++.+.++.+.||++-++.+....+..++..++.....           +....++...+.
T Consensus        77 ~~~~~~-l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~-----------s~~~~ialr~ll  144 (495)
T KOG2533|consen   77 KLVGNQ-LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH-----------SFPGLIALRFLL  144 (495)
T ss_pred             chhhhh-hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHH
Confidence            344445 66788889999999999999999999966665555444444443222211           122334444555


Q ss_pred             hhhhccccccccceeeccccccccccchh
Q 045175          105 ITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +..-+.++.+.. .+++..|.+++|+.-+
T Consensus       145 Gl~es~~wP~~~-~~lg~wy~~~e~g~r~  172 (495)
T KOG2533|consen  145 GLFESGGWPGVV-AILGNWYGKSERGLRM  172 (495)
T ss_pred             HHHhcccchHHH-HHHHhhcChhhhhhhH
Confidence            555555555555 8999999999999776

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.55  E-value=0.0003  Score=56.47  Aligned_cols=106  Identities=18%  Similarity=0.124  Sum_probs=74.2

Q ss_pred             HhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175           15 YYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        15 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (177)
                      ..+|.+. +.+|.+... -+.+....+++.++|+++.+++.+|+++++.+..+.++.+++.+.++...           .
T Consensus       239 aLlPl~a~~~l~~~a~~-yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-----------~  306 (524)
T PF05977_consen  239 ALLPLFARDVLGGGASG-YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP-----------S  306 (524)
T ss_pred             HhhhHHHHHHhCCcHHH-HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch-----------H
Confidence            3467777 456877776 67777888999999999999999999998888888877777766555421           1


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+...+...+.+........... +...+..|.+.||+..
T Consensus       307 ~~~~~~~l~l~G~~~~~~~~~~~-t~~Q~~~P~~~~GRv~  345 (524)
T PF05977_consen  307 FWLALIALFLAGAAWIIANSSLN-TLVQLSVPDWVRGRVF  345 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHhHHH
Confidence            33333333444443333333333 7888999999999886

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.54  E-value=5.9e-05  Score=59.32  Aligned_cols=100  Identities=13%  Similarity=-0.009  Sum_probs=67.3

Q ss_pred             cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 045175           24 ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLA  102 (177)
Q Consensus        24 ~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (177)
                      .+.+.+. .+++.....++.+++.+..|+-..|.+. |+.++.++++++++.++.....+....      ..+++++.+.
T Consensus        66 ~~A~~~f-fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~------~~y~mL~~R~  138 (488)
T KOG2325|consen   66 PTATATF-FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG------VKYLMLVARI  138 (488)
T ss_pred             CCCCcch-hhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc------hHHHHHHHHH
Confidence            4555555 7788888899999999999999999986 778899999999998887554443332      1555565555


Q ss_pred             HHhhhhccccccccceeeccccccccccch
Q 045175          103 LYITFFAPGMGPVPWTVNSEVYREQYRGIC  132 (177)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~  132 (177)
                      +.+++.+ .....- .|+++..-.+.|.++
T Consensus       139 l~Gvg~~-n~a~lR-~Y~a~~s~~~dR~rA  166 (488)
T KOG2325|consen  139 LTGVGVG-NFAVLR-AYIADASTVEDRPRA  166 (488)
T ss_pred             HcCcCcc-cHHHHH-HHHHhccCccchHHH
Confidence            5444433 233344 677775444444444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.52  E-value=1.3e-05  Score=63.58  Aligned_cols=66  Identities=27%  Similarity=0.262  Sum_probs=51.1

Q ss_pred             hhhhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchhhhHhhHHH
Q 045175            4 FQQFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKLALSSLTGV   70 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~~~~~~~~~   70 (177)
                      +++....++..+|.|.+.++ .|+++.+ +..+++...++++++.+++|+++||    ..+|........+.
T Consensus       283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~-a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  283 FFLKLVNYGFSYWLPLYLKSNGGYSELQ-ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             HHHhhccccHHHHHHHHHHcCCCcChHH-hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44445568889999999977 4578877 8889999999999999999999999    55555554444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.52  E-value=0.00019  Score=55.28  Aligned_cols=60  Identities=12%  Similarity=-0.020  Sum_probs=41.2

Q ss_pred             hhHHHHHHc----CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175           16 YNPTIVQMA----SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL   76 (177)
Q Consensus        16 ~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~   76 (177)
                      +.|.+.++.    +.+... ......+..+...++.+..+++.||+|||+.+..+.++.++...+
T Consensus       237 ~~~~y~~~~~~~~~~~~~~-~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~  300 (396)
T TIGR00882       237 QFANFFTSFFATPQQGTRV-FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG  300 (396)
T ss_pred             HHHHHHHHhccccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            455555443    223333 455566666777888899999999999999988877766665543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.50  E-value=0.00034  Score=54.08  Aligned_cols=57  Identities=14%  Similarity=0.134  Sum_probs=39.9

Q ss_pred             HHHHHHcCCCCchHHHHHHHH-HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHH
Q 045175           18 PTIVQMASFQSNQLALLLSLA-VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLV   75 (177)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   75 (177)
                      +.+.++.|.+.++ ..+.... ..++..++.++++++.||+|||+.+..+..+..+..+
T Consensus       234 ~~l~~~~G~~~~~-~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l  291 (402)
T PRK11902        234 TFLIRGAGFSAGE-VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL  291 (402)
T ss_pred             HHHHHhcCCCHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3344667888776 5444433 3445789999999999999999987766665555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.49  E-value=0.00072  Score=52.27  Aligned_cols=53  Identities=17%  Similarity=0.045  Sum_probs=41.2

Q ss_pred             HHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhh
Q 045175           14 MYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSL   67 (177)
Q Consensus        14 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~   67 (177)
                      .+..|.+. +.+|.+..+ .........++..++.++.+++.||.++|+.+..+.
T Consensus       225 ~~~~~~~~~~~lg~s~~~-~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        225 RFLVLAWAPVALGITLNQ-PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHHHHHHHHcCCChhH-HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            33445555 446888877 777888888889999999999999999888776664

>PRK11462 putative transporter; Provisional

Probab=97.47  E-value=0.00098  Score=52.71  Aligned_cols=116  Identities=16%  Similarity=0.059  Sum_probs=71.5

Q ss_pred             hHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchhhh-HhhHHHHHHHHHHHHHHHhc
Q 045175           11 NTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKLAL-SSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus        11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~~~~~~~~~~~   84 (177)
                      .....|..+++ +..|++... +..+..+..+.-.+.-++.|.++||    +|||+.++ ++.+..+++.++   .+..+
T Consensus        26 ~~~~~~l~~fyt~~~Gl~~~~-~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l---lf~~p  101 (460)
T PRK11462         26 DNVMLYMMFFYTDIFGIPAGF-VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL---AYSTP  101 (460)
T ss_pred             HHHHHHHHHHHHHhhCCCHHH-HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH---HHhCC
Confidence            34445566666 667998876 7777777788888999999999996    68766654 555555555432   22222


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccc-cccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~  133 (177)
                       +.+ ......+..+...++...++..-.|.. ++.+|+.+ .++|++..
T Consensus       102 -~~s-~~~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~  148 (460)
T PRK11462        102 -DLS-MNGKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQ  148 (460)
T ss_pred             -CCC-cchHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHH
Confidence             111 111122334444455555555444444 89999988 56787665

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.44  E-value=0.00072  Score=40.47  Aligned_cols=68  Identities=18%  Similarity=0.094  Sum_probs=58.2

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW   79 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   79 (177)
                      +..+...|.+.++.+++.++ +.++.+...++.++|++...++.++.++|+.+..+.+...+..+.++.
T Consensus         9 FayTplLP~M~~~~~ls~~~-ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQ-AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            45666788888999999998 999999999999999999999999988888888888887777766655

Note that many members are hypothetical proteins.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.38  E-value=0.00064  Score=52.57  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=40.1

Q ss_pred             chhHHHHhh-HHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHH
Q 045175            9 GINTVMYYN-PTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTG   69 (177)
Q Consensus         9 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~   69 (177)
                      +.+....+. |.+.++.|++.+. .........++..++.++.+++.||.+|+ .++.+..+
T Consensus       231 ~~~~~~~~~~p~~~~~~g~s~~~-~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~  290 (394)
T PRK10213        231 GQFAFFTYIRPVYMNLAGFGVDG-LTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLV  290 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHH
Confidence            333444444 6666778988876 66667777788899999999999996544 43333333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.37  E-value=0.00034  Score=54.50  Aligned_cols=105  Identities=11%  Similarity=0.086  Sum_probs=62.3

Q ss_pred             HHHHhhHHHHHHc--CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175           12 TVMYYNPTIVQMA--SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS   89 (177)
Q Consensus        12 ~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
                      ....|.+.+.++.  +.+... +.........+..+|.++++++.||+++|+++.+..++..++.++.....        
T Consensus       250 ~~~s~l~~y~~~~~~~~~~~~-a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~--------  320 (410)
T TIGR00885       250 MCWTFIIQYAVRLIPGMTAGF-AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG--------  320 (410)
T ss_pred             HHHHHHHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence            3445566666544  333333 33344444567789999999999999999988777777666655444311        


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccceeecccccccccc
Q 045175           90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG  130 (177)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~  130 (177)
                          ...........+.+.+..+ |..++...+..+++.+.
T Consensus       321 ----~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~  356 (410)
T TIGR00885       321 ----GHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKY  356 (410)
T ss_pred             ----ChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhh
Confidence                1112222333333344344 44447888888877654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.00074  Score=52.70  Aligned_cols=119  Identities=13%  Similarity=0.112  Sum_probs=62.8

Q ss_pred             hhHHHHhhHHHHHH----cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC----CchhhhHhhHHHHHHHHHHHH-H
Q 045175           10 INTVMYYNPTIVQM----ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG----RKKLALSSLTGVIISLVLLSW-A   80 (177)
Q Consensus        10 ~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g----rr~~~~~~~~~~~~~~~~~~~-~   80 (177)
                      .....+|.|.+...    .|.+.+. ..+...+..+++.+|.+++|.++||+.    |........+........... .
T Consensus       260 ~Gs~sww~p~~~~~~~~~~~~~~~~-~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L  338 (493)
T KOG1330|consen  260 IGSLSWWAPAFIYYSYELIGFDHNA-TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFL  338 (493)
T ss_pred             ccccchhhhhHHHHHHHHhCCcccc-chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHH
Confidence            34556666766532    2555565 777888888999999999999999943    211122222222211111111 1


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .......   ....+..+++..+........+.+.. -+..|+.|++.|.++.
T Consensus       339 ~~~~~~~---~~s~~~~~il~~~g~~~~~~~~a~n~-~i~l~vV~p~~Rt~a~  387 (493)
T KOG1330|consen  339 FLFPAFT---SSSMIFGLILFLVGETISWFNWATNN-PIFLEVVPPSRRTTAY  387 (493)
T ss_pred             HHHHhhh---hHHHHHHHHHHHHHHHHHhccccccc-ceeeEecCcccccHHH
Confidence            1111111   11122222222222222233444445 7889999999999987

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.30  E-value=0.00029  Score=54.71  Aligned_cols=114  Identities=11%  Similarity=0.027  Sum_probs=76.2

Q ss_pred             hHHHHhhHHHHHHcC-CCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175           11 NTVMYYNPTIVQMAS-FQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS   89 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
                      .....|.+.+.++.| .+.+. ......+..+..++.-...+++..|+|.|++++.+.+..++=..+++...   + +  
T Consensus       224 ~~~~~f~~~yl~~~gg~~~~~-~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~---~-~--  296 (400)
T PF03825_consen  224 AAYYTFFSIYLQELGGYSGST-IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS---D-P--  296 (400)
T ss_pred             HHHHHHHHHHHHHcccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc---C-C--
Confidence            345566677778887 55554 55566677788899999999999999999999999888887776655431   0 0  


Q ss_pred             chhHHHHH-HHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           90 SEVYGWIA-VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                       ....... +....+-+..++....... .|+.+..|++.|+++.
T Consensus       297 -~~~~~~~~~l~q~lhG~tf~~~~~a~~-~yi~~~~p~~~~at~Q  339 (400)
T PF03825_consen  297 -WPFIVALQLLGQLLHGLTFGLFHAASV-RYIDRIAPPELRATAQ  339 (400)
T ss_pred             -cHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhCCccchHHHH
Confidence             0001111 1111234555555555555 8999999999998876

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.26  E-value=0.00033  Score=55.32  Aligned_cols=79  Identities=20%  Similarity=0.189  Sum_probs=52.6

Q ss_pred             HHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccccccccee
Q 045175           40 AGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTV  119 (177)
Q Consensus        40 ~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (177)
                      ++..++.++..|.++||+|||..+....+...+..+...+.             .++..+ ..-..+++... .....++
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------------~~~~~~-~~~l~g~~~~~-~s~~~a~  136 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------------GYWFFL-LLGLSGGFSAI-FSVGFAY  136 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------------HHHHhh-hcccccchhhh-hhhhhhh
Confidence            56678889999999999999999988887777666554442             122222 11112222222 2334489


Q ss_pred             eccccccccccchh
Q 045175          120 NSEVYREQYRGICG  133 (177)
Q Consensus       120 ~~e~~p~~~R~~~~  133 (177)
                      .++...++.|....
T Consensus       137 vadis~~~~R~~~~  150 (463)
T KOG2816|consen  137 VADISSEEERSSSI  150 (463)
T ss_pred             eeeccchhHHHHHH
Confidence            99999999998776

>PRK11462 putative transporter; Provisional

Probab=97.25  E-value=0.00032  Score=55.42  Aligned_cols=38  Identities=11%  Similarity=0.020  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHH
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGV   70 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~   70 (177)
                      ........+..+++.+++++++||+|+|+.+..+..+.
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            34455566777889999999999999998876544433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.18  E-value=0.0048  Score=48.69  Aligned_cols=118  Identities=17%  Similarity=0.106  Sum_probs=74.4

Q ss_pred             chhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchh-hhHhhHHHHHHHHHHHHHHH
Q 045175            9 GINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKL-ALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         9 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~   82 (177)
                      .......|+.+++ ...|++... +..+-.+.-+.-.+.-|+.|.++||    +|||+. ++++.+..++...   ..+.
T Consensus        27 ~~~~~~~yLl~fYTdv~Gis~~~-aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~---l~F~  102 (467)
T COG2211          27 AFGIVVLYLLFFYTDVFGLSAAL-AGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV---LLFI  102 (467)
T ss_pred             HHHHHHHHHHHHHhcccCCcHHH-HHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH---HHHc
Confidence            3455667777777 557888776 6667777777788999999999996    677555 4555555555543   2222


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccc-ccccchh
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYRE-QYRGICG  133 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~  133 (177)
                      .++.+  ......+..+...++...++..-.|.. ++.+|+.+. ++|.+..
T Consensus       103 ~p~~~--~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~  151 (467)
T COG2211         103 TPDFS--MTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLT  151 (467)
T ss_pred             CCCcc--cCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHH
Confidence            22211  111234445555555666665555555 899999774 6787765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.15  E-value=0.0015  Score=50.63  Aligned_cols=107  Identities=11%  Similarity=-0.031  Sum_probs=55.6

Q ss_pred             HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEe-cccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175           14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLI-DHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV   92 (177)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~-d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (177)
                      ..+.|.+.++.+.++.+ ..+......+....+....++.. ||++.|+.+..+.++.++..+......           
T Consensus       228 ~~~~p~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~-----------  295 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSA-VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS-----------  295 (400)
T ss_pred             HHhhhhhHHhhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-----------
Confidence            34667877665545544 44454554544444444444444 456656665666655555544333211           


Q ss_pred             HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ......+....++.+.... .+...++..|..|++.|++..
T Consensus       296 ~~~~~~~~~~l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~  335 (400)
T PRK11646        296 NLQQLFTLICLFYIGSIIA-EPARETLSASLADARARGSYM  335 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HccHHHHHHhcCCcccchhhh
Confidence            0112222222333322222 233337888999999999876

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.13  E-value=0.0012  Score=44.41  Aligned_cols=117  Identities=13%  Similarity=0.051  Sum_probs=74.0

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCC------CCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASF------QSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL   76 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~   76 (177)
                      ++..++++.......-++.++.+-      ++.. ...-..+......++.++.+.+.+++|.|+.++++.+...+....
T Consensus         5 f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~-G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~   83 (156)
T PF05978_consen    5 FMFLFTAFQTQSFIQESVIHSVHERNPSSISAGL-GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS   83 (156)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhcCcccccccc-cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            445556666665555555544432      3333 555666667777888899999999999999999888876655433


Q ss_pred             HHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           77 LSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...            ...+..+....+.+.+.+..|.+.. .++.+..+++.|++..
T Consensus        84 ~~~------------~~~~~l~~~s~l~G~~~a~lW~aqg-~ylt~~s~~~~~~~~~  127 (156)
T PF05978_consen   84 FFY------------PNSYTLYPASALLGFGAALLWTAQG-TYLTSYSTEETIGRNT  127 (156)
T ss_pred             HHh------------hhHHHHHHHHHHHhhhhHHhhHhhh-HHHHHcCCHHHHhhHH
Confidence            221            1133444444555666666666666 6777877777666544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK09848 glucuronide transporter; Provisional

Probab=97.10  E-value=0.00031  Score=55.12  Aligned_cols=106  Identities=13%  Similarity=0.027  Sum_probs=58.3

Q ss_pred             hHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175           11 NTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS   89 (177)
Q Consensus        11 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
                      .....+.|++.++ +|.++.. .........++.+++.++.+++.||+|+|+.+..+.++.+++.+....    ....  
T Consensus       245 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~----~~~~--  317 (448)
T PRK09848        245 FAVSASSLFYVRYVLNDTGLF-TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW----VSVW--  317 (448)
T ss_pred             HHHhhhheeeEeeecCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH----cCch--
Confidence            3334445555533 4544433 333333334566788999999999999999998888776666544332    1111  


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccceeeccccccc
Q 045175           90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQ  127 (177)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  127 (177)
                         ..+...+...+.+.+.+.. .+..+++.+|..|.+
T Consensus       318 ---~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~  351 (448)
T PRK09848        318 ---SLPVALVALAIASIGQGVT-MTVMWALEADTVEYG  351 (448)
T ss_pred             ---hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhh
Confidence               1222222233333333333 334457778877653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.00067  Score=53.34  Aligned_cols=92  Identities=25%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      +...........+++.+++..+.+|+|+|+.+.++.++.++..++..+..    .+     .....++..++.+.+ ...
T Consensus       274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~----~~-----~~~l~~~~~~i~~~g-~~~  343 (467)
T COG2211         274 AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP----AG-----SVVLIVVALIIAGVG-TGI  343 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc----Cc-----chHHHHHHHHHHHHH-hhc
Confidence            44455555565666799999999999999999999888887775544432    11     122233333333333 334


Q ss_pred             cccccceeeccccc-----cccccchh
Q 045175          112 MGPVPWTVNSEVYR-----EQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p-----~~~R~~~~  133 (177)
                      ..+.+|++.+|...     +..|..+.
T Consensus       344 ~~~l~wam~~d~vDyge~~TG~R~eGi  370 (467)
T COG2211         344 ANPLPWAMVADTVDYGEWKTGVRREGI  370 (467)
T ss_pred             cccccHHHhcchhhHHHHHhCCCchhh
Confidence            56788999998754     33455554

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.08  E-value=0.00039  Score=55.19  Aligned_cols=64  Identities=6%  Similarity=0.004  Sum_probs=51.9

Q ss_pred             hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhH
Q 045175            4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLT   68 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~   68 (177)
                      +...++...+...++.+.++.|++..+ ...++...-++.+++.+++|+++||+.+|+.++.+..
T Consensus        21 ~~~~~~~g~l~pll~vy~kQLGl~p~~-~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl   84 (618)
T KOG3762|consen   21 LFFGARFGSLFPLLAVYFKQLGLNPAV-VGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSL   84 (618)
T ss_pred             eeeeecccccchHHHHHHHHcCCCHHH-hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHH
Confidence            344556667778899999999999998 7778888888899999999999999987666555444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.97  E-value=0.0023  Score=49.23  Aligned_cols=102  Identities=13%  Similarity=0.014  Sum_probs=71.3

Q ss_pred             hhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 045175           16 YNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGW   95 (177)
Q Consensus        16 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (177)
                      ..|.+.+.++++..+ +..+......+..+.++..+++.+|+|+|+-++.+..++++++.++..+..        .....
T Consensus        35 Lip~l~~~f~ls~~~-a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~--------~~~y~  105 (422)
T COG0738          35 LIPHLKEVFDLTYFE-ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS--------SKSYG  105 (422)
T ss_pred             hHHHHHHHhCccHHH-HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh--------hhhHH
Confidence            457777778999888 888999999999999999999999999999999999999999876653321        11122


Q ss_pred             HHHHHHHHHhhhhccccccccceeeccccccc
Q 045175           96 IAVIGLALYITFFAPGMGPVPWTVNSEVYREQ  127 (177)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  127 (177)
                      ..++.....+.+.+.- ......++..+.|++
T Consensus       106 ~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~  136 (422)
T COG0738         106 FFLVALFILASGIGLL-ETAANPYVTLLGKPE  136 (422)
T ss_pred             HHHHHHHHHHhhhHHH-HhccchHHHHhCCch
Confidence            2233233333333322 223336888888774

>PRK09669 putative symporter YagG; Provisional

Probab=96.96  E-value=0.00071  Score=53.10  Aligned_cols=84  Identities=18%  Similarity=0.250  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      .........+..+++.+++++++||+|+|+.+..+.++.++..+....   ...+      ......+...+.+.+.+ .
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~i~g~~~~-~  335 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF---IPPS------NVWLIFALNILFNFIQN-L  335 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---hCcc------hHHHHHHHHHHHHHHHH-H
Confidence            334444555667788899999999999999988776655443322111   1111      12222333333333333 3


Q ss_pred             cccccceeeccccc
Q 045175          112 MGPVPWTVNSEVYR  125 (177)
Q Consensus       112 ~~~~~~~~~~e~~p  125 (177)
                      ..+..+++.+|..+
T Consensus       336 ~~~~~~am~ad~~d  349 (444)
T PRK09669        336 TTPLQWSMFSDVVD  349 (444)
T ss_pred             HHHHHHHHHHhhhh
Confidence            34566789988876

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.90  E-value=0.001  Score=54.00  Aligned_cols=92  Identities=12%  Similarity=-0.055  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhh-hHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA-LSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAP  110 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (177)
                      ..+.......+..+|.++.+.+..++||-|.. +.+.+++.++.   +.+.....++      ....+....+.+.+.+.
T Consensus       351 ~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~---Gama~~~~~n------~~~~i~~~~l~g~giG~  421 (599)
T PF06609_consen  351 IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFC---GAMAAVRPDN------KNAAIAFLVLAGFGIGG  421 (599)
T ss_pred             eehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHH---HHHHHccCCC------cchHHHHHHHHHHhHHH
Confidence            45667777788888999999999988875544 45555444333   2222222222      11122223333333333


Q ss_pred             ccccccceeeccccccccccchh
Q 045175          111 GMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       111 ~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ...+.. +...-..|++.-+++.
T Consensus       422 ~~~~~~-~~~ql~~p~~~ig~a~  443 (599)
T PF06609_consen  422 ILVPAI-VIAQLIVPDEDIGTAT  443 (599)
T ss_pred             HHHHHH-HeeEeeeCchHHHHHH
Confidence            333333 5555567777666554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.89  E-value=0.0063  Score=47.56  Aligned_cols=102  Identities=13%  Similarity=0.007  Sum_probs=63.4

Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhh
Q 045175           27 QSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYIT  106 (177)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (177)
                      +.+. +.|.+.++.++..+..+.+.|+.||+|-|...+.+.++.+++..+=.....-.-++  ..+ ....+.+..+.+.
T Consensus        77 s~~~-~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~--~f~-~~l~~~Gq~iaa~  152 (480)
T KOG2563|consen   77 SSSA-ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPP--LFR-RPLTHTGQSIAAA  152 (480)
T ss_pred             chHH-HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccc--cch-hhhhHHhHHHHHH
Confidence            4444 88999999999999999999999999999999999998888865433321110000  011 1123333333222


Q ss_pred             hhccccccccceeeccccccccccchh
Q 045175          107 FFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       107 ~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..... -..+--+..-+||+++|+++.
T Consensus       153 Aq~Fi-m~lPskiA~~WF~~~qra~A~  178 (480)
T KOG2563|consen  153 AQPFI-LGLPSKIAAVWFPPDQRAIAT  178 (480)
T ss_pred             hhhHh-hccccHHHHhhCCcchhhhhh
Confidence            22111 122213444569999999987

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.89  E-value=0.0021  Score=47.61  Aligned_cols=103  Identities=15%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             hhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH-HHHHHHHHHhcCCCCcchhH
Q 045175           16 YNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS-LVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        16 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   93 (177)
                      ..|.++ +.+|+++.. +..+.+.......+..++.|.++||+||+..++.+..+..+. =..+.+.+          ..
T Consensus       286 lg~~fF~~rfGlS~~~-a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~----------ls  354 (459)
T KOG4686|consen  286 LGPMFFQKRFGLSAVS-AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF----------LS  354 (459)
T ss_pred             hhHHHHHHhhCCChhh-ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh----------cc
Confidence            356666 668998877 666666677778899999999999999988766544333222 21111111          11


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ++..+..+   +...+. .....|..++.+.|++.-|++.
T Consensus       355 Py~~m~~l---GLsysl-lAcslWP~va~~vpE~qLGTay  390 (459)
T KOG4686|consen  355 PYTSMTFL---GLSYSL-LACSLWPCVASLVPEEQLGTAY  390 (459)
T ss_pred             HHHHHHHH---hhhHHH-HHHHHhhhhhhhCCHHHhcchH
Confidence            22222222   222221 1223566777788888888876

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.75  E-value=0.0048  Score=48.93  Aligned_cols=57  Identities=21%  Similarity=0.213  Sum_probs=49.0

Q ss_pred             hhhhhhchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc
Q 045175            3 AFQQFTGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK   60 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr   60 (177)
                      .++...+.+.+..|+|+|++ -+|++..+ .++.+++..+...+..+++|.++||+.+|
T Consensus       267 ~f~~~~~~~~l~~y~PtY~~~VL~f~v~~-~G~~salP~l~~~~~k~~~g~lsD~l~~~  324 (466)
T KOG2532|consen  267 AFGGNWGFYLLLTYLPTYLKEVLGFDVRE-TGFLSALPFLAMAIVKFVAGQLSDRLTFR  324 (466)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhCCChhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35566778899999999995 57999888 88999999999999999999999998663

>PRK10054 putative transporter; Provisional

Probab=96.67  E-value=0.0021  Score=49.75  Aligned_cols=90  Identities=8%  Similarity=-0.090  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (177)
                      ........+......+..+++.||.+||+.+..+..+..+..+......    +      ......+....++.+.. ..
T Consensus       247 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~g~~-~~  315 (395)
T PRK10054        247 AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----N------SLLLWGMSAAVFTVGEI-IY  315 (395)
T ss_pred             HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc----h------HHHHHHHHHHHHHHHHH-HH
Confidence            3344444444455567778999999999988877766666554443210    0      01122222233332222 22


Q ss_pred             ccccceeeccccccccccchh
Q 045175          113 GPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       113 ~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+..+....+..|++.|++..
T Consensus       316 ~p~~~~~~~~~~p~~~~~~~~  336 (395)
T PRK10054        316 APGEYMLIDHIAPPGMKASYF  336 (395)
T ss_pred             HhhHHHHHHHhCCcccceehH
Confidence            334446788888998887663

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.60  E-value=0.0077  Score=49.69  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             hhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHH-HHHhhhhhheeEecccCC--chhhhHhhHHHHHHHH
Q 045175            5 QQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAG-TNAVGTIIGIYLIDHFGR--KKLALSSLTGVIISLV   75 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~gr--r~~~~~~~~~~~~~~~   75 (177)
                      ......+....|.|.++ +.+|++..+ +..+.....+ +..+|.+++|+++||+++  |+.+..+.+...+..+
T Consensus       341 ~~~~~~~~~~~~lP~yl~~~~g~s~~~-ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~  414 (633)
T TIGR00805       341 IDSLAFNGYITFLPKYLENQYGISSAE-ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL  414 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHH-HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence            44556677888999999 568998887 6656555454 567999999999999984  4555555555554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.57  E-value=0.0073  Score=49.93  Aligned_cols=103  Identities=19%  Similarity=0.210  Sum_probs=63.0

Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 045175           21 VQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVI   99 (177)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (177)
                      ....|.++.. +..+...+.....+..+++|+++|+ +||++.++.+.++..++..+.+.... ....  ........++
T Consensus        15 ~~~lg~~~~~-A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~~--~~~~~~~~l~   90 (654)
T TIGR00926        15 LNFLGFSEST-STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSSG--HPLHDLLDLL   90 (654)
T ss_pred             HHHcCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-cccc--cchHHHHHHH
Confidence            3567888877 6666666666678889999999997 89999999888887777765544211 1100  0011112233


Q ss_pred             HHHHHhhhhccccccccceeecccccccc
Q 045175          100 GLALYITFFAPGMGPVPWTVNSEVYREQY  128 (177)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  128 (177)
                      ++.+..++.+..-.... +...|.++++.
T Consensus        91 gLaLia~G~GgiKp~vs-af~gdqf~~~~  118 (654)
T TIGR00926        91 GLALIALGTGGIKPCVS-AFGGDQFEERQ  118 (654)
T ss_pred             HHHHHHhhccccccCch-hhhHhhcCccc
Confidence            33333333333334444 88888887654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.52  E-value=0.011  Score=42.66  Aligned_cols=107  Identities=25%  Similarity=0.190  Sum_probs=59.7

Q ss_pred             HhhHHHHHHcCCCCc--hHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175           15 YYNPTIVQMASFQSN--QLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV   92 (177)
Q Consensus        15 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (177)
                      ...+.+..+.+.+..  . ..+......+...++.++.|.+.||+|||+.++.+........+......   . .     
T Consensus        23 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~-~-----   92 (338)
T COG0477          23 PALPLLLSTLSLSSGRLL-YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---N-V-----   92 (338)
T ss_pred             HHHHHHHHHcCCCchhHH-HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc---c-c-----
Confidence            344555555554442  3 56677777777788889999999999999777766654333322222211   0 0     


Q ss_pred             HHHHHHHHHHHHhhhhccccccccceeecccccc-ccccch
Q 045175           93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYRE-QYRGIC  132 (177)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~  132 (177)
                      .....++.....+...+ ...+...++..|.+|. +.|+..
T Consensus        93 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  132 (338)
T COG0477          93 GLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLA  132 (338)
T ss_pred             hHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHH
Confidence            02222222222222222 3334444889999987 445443

>TIGR00788 fbt folate/biopterin transporter

Probab=96.48  E-value=0.0065  Score=48.25  Aligned_cols=53  Identities=9%  Similarity=-0.121  Sum_probs=36.1

Q ss_pred             hhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC-----CchhhhHhhHHH
Q 045175           16 YNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG-----RKKLALSSLTGV   70 (177)
Q Consensus        16 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----rr~~~~~~~~~~   70 (177)
                      ..+.++ +++|++..+ .........+...+ .+++|+++||++     ||+.++.+.++.
T Consensus        47 ~~~~~l~~~lg~s~~~-i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        47 PLSPMLTDDLGLDGAR-YQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             hhhHHHHHhcCCCHHH-HHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHH
Confidence            344445 567999887 65666666776666 445999999996     566566655444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.43  E-value=0.0093  Score=45.44  Aligned_cols=73  Identities=16%  Similarity=0.057  Sum_probs=58.0

Q ss_pred             hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-CCchhhhHhhHHHHHHHHHH
Q 045175            4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-GRKKLALSSLTGVIISLVLL   77 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~   77 (177)
                      -.|....|....|.|.++.+.|+++.+ +........+++.+.++....+++|. .+|+..+.....+.+..+.+
T Consensus       218 GlqS~~~Y~~~~WLP~ili~~G~sa~~-aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~  291 (395)
T COG2807         218 GLQSLLYYIVIGWLPAILIDRGLSAAE-AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL  291 (395)
T ss_pred             HhhHHHHHHHHHHHHHHHHHcCCCHHH-hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            346667899999999999999999998 99899999999999999999999975 46666655555555554433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.36  E-value=0.011  Score=45.45  Aligned_cols=45  Identities=9%  Similarity=0.003  Sum_probs=31.3

Q ss_pred             HHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC
Q 045175           14 MYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR   59 (177)
Q Consensus        14 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr   59 (177)
                      ..+.+.+.++ .|.+..+ ..+......++..++.++.+++.||++|
T Consensus       227 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMT-VSILFILPIPAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             HHhChHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566644 7887766 5666666667777888888888888873

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.28  E-value=0.0077  Score=46.89  Aligned_cols=59  Identities=15%  Similarity=0.099  Sum_probs=42.4

Q ss_pred             hhchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHh
Q 045175            7 FTGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSS   66 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~   66 (177)
                      +........+.|.+++ ..|++..+ .+.+.++..+..++.+++.|.++||+|.||-+++.
T Consensus        20 Ff~~gi~~pF~~iWL~~~~GLs~~~-iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~   79 (412)
T PF01306_consen   20 FFIWGIFLPFFPIWLTQVAGLSGTE-IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF   79 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHccccCCCHHH-HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence            3334445555667775 47999998 88888888889999999999999999966665543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.23  E-value=0.018  Score=45.98  Aligned_cols=87  Identities=17%  Similarity=0.077  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHH-HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVII-SLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      .+..++..+...+..++.|.++|+-|+||.++......++ +..++..    ..++   .  .....++..+...+++..
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~----v~~~---~--~~~~~~l~iia~v~~~~~  143 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF----VSPG---Q--WWLALVLFIIANVGYEAS  143 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH----hCcc---h--HHHHHHHHHHHHHHHHHH
Confidence            4566677777888999999999999987777654444333 3322222    1111   1  223333333333344333


Q ss_pred             cccccceeeccccccccc
Q 045175          112 MGPVPWTVNSEVYREQYR  129 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R  129 (177)
                       .....+++.|+.+++.+
T Consensus       144 -~vfyna~LP~la~~~~~  160 (477)
T PF11700_consen  144 -NVFYNAYLPDLARPEPR  160 (477)
T ss_pred             -HHHHHHHhHhhcCCChh
Confidence             33344899999888777

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.08  E-value=0.034  Score=43.07  Aligned_cols=109  Identities=15%  Similarity=-0.040  Sum_probs=59.4

Q ss_pred             HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC-----CchhhhHhhHHHHHH-HHHHHHHHHhcCC---CCc-ch
Q 045175           22 QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG-----RKKLALSSLTGVIIS-LVLLSWAFISGSS---ASS-SE   91 (177)
Q Consensus        22 ~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----rr~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~-~~   91 (177)
                      .+++++... .......-.+. .+..+..|+.+|+.+     ||..+++.-.+.... ..+..........   +.+ +.
T Consensus         8 vEL~vpA~l-v~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    8 VELGVPAWL-VALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHhccHHHH-HHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            566776655 44444444443 467899999999999     888877654443333 2222222222222   110 11


Q ss_pred             hHH-HHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           92 VYG-WIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        92 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ... ....+...+++.+....-.+.. +..+|..|++.|++..
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~l-ALl~D~~~e~~R~~~v  127 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFL-ALLADLAPEERRPRVV  127 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHH-HHHHhcCCHhhhhhhH
Confidence            111 1122222333333333333444 8999999999999987

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=95.88  E-value=0.016  Score=44.19  Aligned_cols=106  Identities=14%  Similarity=-0.023  Sum_probs=73.4

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      .......+.+.+++|++.+. +..++++..++..+.+++..++..|+|.++.+..+.++..++.++=...          
T Consensus        29 tsvgPLL~~Ir~~~gls~s~-aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~----------   97 (395)
T COG2807          29 TSVGPLLDEIRQDLGLSFSV-AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG----------   97 (395)
T ss_pred             hhhhhhHHHHHHHhcccHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----------
Confidence            34445567777889999888 9999999999999999999999999999988877776655554322110          


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeecccccccccc
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG  130 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~  130 (177)
                        .....+....+.+.+...+-.-.+ ..+-+-||++.-.
T Consensus        98 --~~~~L~~gt~l~G~gIav~nVLLP-slIK~~Fpk~~~~  134 (395)
T COG2807          98 --GLPLLFLGTLLAGAGIAVINVLLP-SLIKRDFPKRVGL  134 (395)
T ss_pred             --cHHHHHHHHHHHHhhHHHHHHhhh-HHHHhhcccchhh
Confidence              023344444444444444434456 7888888887644

>TIGR00788 fbt folate/biopterin transporter

Probab=95.71  E-value=0.0012  Score=52.42  Aligned_cols=106  Identities=5%  Similarity=-0.202  Sum_probs=68.7

Q ss_pred             HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc--CCCCcchhHHHHHHHH
Q 045175           23 MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG--SSASSSEVYGWIAVIG  100 (177)
Q Consensus        23 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  100 (177)
                      ..|.+... .+.......++.+++..+.+++.+|++.|+++.++.++.+++.+.........  ....   .........
T Consensus       282 ~lG~s~~~-~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi---~~~~~~~~~  357 (468)
T TIGR00788       282 CLPGGPSF-SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGI---SDEVFVLGD  357 (468)
T ss_pred             cCCCCcch-hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCC---CCeeeeeeh
Confidence            45778777 77777778899999999999999999999999888887777664422111000  0000   001112222


Q ss_pred             HHHHhhhhccccccccceeeccccccccccchh
Q 045175          101 LALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..+.+...+....+.. .+..+..|++.+++..
T Consensus       358 ~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~  389 (468)
T TIGR00788       358 SIIAEVLAQLKFMPFL-VLLARLCPSGCESSVF  389 (468)
T ss_pred             hHHHHHHHHHHHccHH-HHHHHhCCCCceehHH
Confidence            3333444444555565 8999999999998776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.34  E-value=0.056  Score=41.85  Aligned_cols=69  Identities=14%  Similarity=0.053  Sum_probs=53.3

Q ss_pred             hhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175           10 INTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW   79 (177)
Q Consensus        10 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   79 (177)
                      -..+..|.+.+..+ .|.++.+ +....+...++.++|.+++.++..|+...|.+.....+..+.++....
T Consensus       252 Eva~gsfl~~y~~~~~g~~~~~-aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l  321 (422)
T COG0738         252 EVAIGSFLVSYLEELLGLNEQQ-AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL  321 (422)
T ss_pred             HHHHHHHHHHHHHhcCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778888855 6788887 778888889999999999999999999888887776666555544444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.85  E-value=0.16  Score=39.98  Aligned_cols=115  Identities=17%  Similarity=0.121  Sum_probs=73.9

Q ss_pred             hhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 045175           16 YNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGW   95 (177)
Q Consensus        16 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (177)
                      .+..|.++.|+++.. ....-....+.++.|.+...++.+|+|..+.=+++.....++..+....+....++. +.....
T Consensus       280 lmt~yl~~~G~s~~~-igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~-~~~s~~  357 (432)
T PF06963_consen  280 LMTAYLKSQGYSPSV-IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF-SSISAY  357 (432)
T ss_pred             HHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHH
Confidence            345666677999887 666777778888999999999999999888888888888877776665555444321 011111


Q ss_pred             HHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           96 IAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..+.+....-.+.- ++-....-+..|..|+++|+...
T Consensus       358 ~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~  394 (432)
T PF06963_consen  358 LLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVS  394 (432)
T ss_pred             HHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHH
Confidence            11211111111111 11222236788999999999876

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=94.84  E-value=0.12  Score=41.27  Aligned_cols=129  Identities=12%  Similarity=-0.044  Sum_probs=70.6

Q ss_pred             hhhhhchhHHHHhhHHHH-HH-cCCCCch-----H----HHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHH
Q 045175            4 FQQFTGINTVMYYNPTIV-QM-ASFQSNQ-----L----ALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVI   71 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~-~g~~~~~-----~----~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~   71 (177)
                      +.++.+.+....|...+. ++ ++-++..     .    ..+......+...+.+++..++.+|+|+ |+.+..+.++.+
T Consensus       268 ffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~  347 (477)
T TIGR01301       268 CLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILA  347 (477)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            344555666666666666 33 3332211     0    1233334444445666777888999985 677788877777


Q ss_pred             HHHHHHHHHHHhcCC--C--------CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           72 ISLVLLSWAFISGSS--A--------SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        72 ~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ++.....+.....++  .        .......+..++.....+..+. ....+||+++++..|++.|+.+.
T Consensus       348 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A-~~~siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       348 ICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA-ITYSIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH-HHHHHhHHHHHHHccccCCCCcc
Confidence            777655543321110  0        0000001334444444444444 33567889999999977776655

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=94.76  E-value=0.094  Score=41.25  Aligned_cols=101  Identities=14%  Similarity=0.164  Sum_probs=58.8

Q ss_pred             cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 045175           24 ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLA  102 (177)
Q Consensus        24 ~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (177)
                      .|.+... +++......+++++++.+.|.+.||.+. |..+++......++...+ ........       ..+.....+
T Consensus       296 sgY~~~~-aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l-~~~t~~~~-------~~viv~~t~  366 (480)
T KOG2563|consen  296 SGYEGVF-AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLML-LTCTLFLG-------DSVIVFTTC  366 (480)
T ss_pred             ccCCccc-cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhccCC-------ceEehhhhH
Confidence            3555444 7888888899999999999999999764 444555444444443111 11111111       111222223


Q ss_pred             HHhhhhccccccccceeeccc-cccccccchh
Q 045175          103 LYITFFAPGMGPVPWTVNSEV-YREQYRGICG  133 (177)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~e~-~p~~~R~~~~  133 (177)
                      ...+.+..+..|+..-+..|. +|..++....
T Consensus       367 ~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsG  398 (480)
T KOG2563|consen  367 GLLGFFGTGYLPIGFELGVETTYPVAEGTSSG  398 (480)
T ss_pred             HHHHHhhcCCCCcceeeeeeeccccCCcccce
Confidence            333444555666776788886 7777766554

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.45  E-value=0.15  Score=42.54  Aligned_cols=73  Identities=18%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             hhhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHH-HHHHHHhhhhhheeEecccC--CchhhhHhhHHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLA-VAGTNAVGTIIGIYLIDHFG--RKKLALSSLTGVIISLVL   76 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~-~~~~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~   76 (177)
                      .+.+...+.....|+|.|+ +++|.+.+. +..++.. ..-+..+|.+++|++..|+.  -|.+..+..+...+..+.
T Consensus       401 ~~~~~~~~~G~~tFlPKyLE~Qfg~sas~-An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  401 SVIESLAITGYITFLPKYLETQFGISASL-ANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             HHHHHHHHhhHHHhhHHHHHHHcCCCHHH-HHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence            4566777888999999999 778999888 6555544 44455789999999999864  455555544444444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=94.29  E-value=0.23  Score=38.86  Aligned_cols=90  Identities=18%  Similarity=-0.003  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHH-HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVI-ISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ....++..+...+-+++.|.++|+.|+||..+..+.... ++.+++...   .+ +    ...+..++++.+....+...
T Consensus        61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i---~~-~----s~~~~~l~~~il~~i~~~~s  132 (438)
T COG2270          61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI---PP-G----SYLLLLLLFLILASIGFEFS  132 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh---CC-C----chHHHHHHHHHHHHHhcchh
Confidence            345555666667888999999999997777654444333 333222221   11 1    11333344444444444433


Q ss_pred             cccccceeeccccccccccc
Q 045175          112 MGPVPWTVNSEVYREQYRGI  131 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~  131 (177)
                       .....+++.++.+++.-++
T Consensus       133 -~Vfyds~L~~~~~k~~~~r  151 (438)
T COG2270         133 -NVFYDSMLPRLTTKDNMGR  151 (438)
T ss_pred             -heehhhHhhhhcCccccCc
Confidence             3344488888887754333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=94.27  E-value=0.35  Score=37.72  Aligned_cols=53  Identities=15%  Similarity=0.130  Sum_probs=33.7

Q ss_pred             hchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEe-cccCCch
Q 045175            8 TGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLI-DHFGRKK   61 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~-d~~grr~   61 (177)
                      ...+....+.|.+.++ .|.+..+ ..+.......+..++..+.+.+. |+.++|.
T Consensus       232 ~~~~~~~~~~P~~l~~~~g~s~~~-~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        232 IPMMSWVAVSPVILIDAGGMTTSQ-FAWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             HHHHHHHHhChHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            3344555567888854 5888777 66666666667777777777655 4454443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=94.10  E-value=0.1  Score=41.86  Aligned_cols=97  Identities=8%  Similarity=-0.099  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHhhhh----hheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhc
Q 045175           34 LLSLAVAGTNAVGTI----IGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFA  109 (177)
Q Consensus        34 ~~~~~~~~~~~i~~~----~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (177)
                      +...+..+..++..+    +++++.+|++.++.+.++.++.+++.+.+........+..  ..+..+.+....+.+. ..
T Consensus       320 ~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~--~vs~~~~~~~~~l~~~-ge  396 (500)
T PRK09584        320 QYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAG--IVSVNWLIASYGLQSI-GE  396 (500)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccCHHHHHHHHHHHHH-HH
Confidence            344444433344444    4466677776667777888888888766555433221111  1112233333333333 33


Q ss_pred             cccccccceeeccccccccccchh
Q 045175          110 PGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       110 ~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ....|....+..+..|++.|+..+
T Consensus       397 ~~~~p~g~s~~~~~aP~~~rg~~~  420 (500)
T PRK09584        397 LMISGLGLAMVAQLVPQRLMGFIM  420 (500)
T ss_pred             HHHhHHHHHHHHHhCcHHHHHHHH
Confidence            344555558899999999999887

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=92.86  E-value=0.11  Score=41.60  Aligned_cols=98  Identities=9%  Similarity=-0.054  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchh-------hhHhhHHHHHHHHHHHHHHH-hcCCCCcchhHHHHHHHHHHHH
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKL-------ALSSLTGVIISLVLLSWAFI-SGSSASSSEVYGWIAVIGLALY  104 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  104 (177)
                      .+......+..++..++.+++.||++||+.       +.++.++.+++.+....... ....+.  ....++......+.
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~i~~~~l~  389 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQG--LTSPWFIVLVYLFQ  389 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--ccCHHHHHHHHHHH
Confidence            344444445566778888999999998873       56666666655543322111 111110  11123333333444


Q ss_pred             hhhhccccccccceeeccccccccccchh
Q 045175          105 ITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +.+.... .+....+..+..|++.++.++
T Consensus       390 g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~  417 (489)
T PRK10207        390 SLGELFI-SALGLAMIAALVPQHLMGFIL  417 (489)
T ss_pred             HHHHHHH-hHHHHHHHHHhChHHHHHHHH
Confidence            4443333 344447888899999999887

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=92.84  E-value=0.04  Score=44.27  Aligned_cols=102  Identities=12%  Similarity=0.001  Sum_probs=73.6

Q ss_pred             HHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 045175           19 TIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIA   97 (177)
Q Consensus        19 ~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (177)
                      .++ ++.|-.+.. -+.......++.++.-++.+++.+|+|+-+++..++.+..+=.+.++...           +.|..
T Consensus       395 fWHled~~~~~~L-fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-----------n~W~v  462 (618)
T KOG3762|consen  395 FWHLEDLGGIKTL-FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-----------NPWMV  462 (618)
T ss_pred             HHHHhhcCCccee-eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-----------Cchhe
Confidence            344 666644443 44555555666788888999999999999999988888877776666643           14444


Q ss_pred             HHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           98 VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +-.-.+-++..+..|..+. +|+....|++.|+++.
T Consensus       463 LPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q  497 (618)
T KOG3762|consen  463 LPIEILQGITHALIWAAII-SYASHVAPPGLRATAQ  497 (618)
T ss_pred             eeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHH
Confidence            4445566666677777777 8999999999998876

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.79  E-value=0.052  Score=42.74  Aligned_cols=116  Identities=14%  Similarity=0.121  Sum_probs=66.7

Q ss_pred             HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchhhhHhhH-HHHHHHHHHHHHHHh----c
Q 045175           14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKLALSSLT-GVIISLVLLSWAFIS----G   84 (177)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~~~~~~~-~~~~~~~~~~~~~~~----~   84 (177)
                      ..|.|.+.++.|++... ...+-...-+.+++.+++.|..+||    +||||.++.... ...+..+++......    .
T Consensus        52 lsy~tPyl~~lGvphk~-~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg  130 (498)
T KOG0637|consen   52 LSYLTPYLQSLGVPHKW-SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG  130 (498)
T ss_pred             hccccHHHHHcCCCccc-ccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence            34566677788998775 4444444556667889999999996    898888764443 334444443333322    1


Q ss_pred             CCCCc--chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccc
Q 045175           85 SSASS--SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGI  131 (177)
Q Consensus        85 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~  131 (177)
                      ++...  ...+....++...+.-+......+|.- ++..|+.....|.+
T Consensus       131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~  178 (498)
T KOG0637|consen  131 DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKT  178 (498)
T ss_pred             CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhh
Confidence            11111  012222334444455555555566777 88888876655544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=92.41  E-value=0.21  Score=39.08  Aligned_cols=90  Identities=14%  Similarity=0.052  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      -....++..+...+.-.+..++.+|+|.|+.++++..++.+=.+..+...           ......+.-.+-+..+...
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-----------~~~~i~~~klLH~~e~~l~  329 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-----------NPWVISLIKLLHALEFPLL  329 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------SHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-----------chHHHHHHHHHHHHHHHHH
Confidence            34556666677788888999999999999999999888888877666532           1444444455555555555


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..+.. -|+.+.+|++..++..
T Consensus       330 lva~f-kYI~~~fd~rlsAt~y  350 (412)
T PF01306_consen  330 LVAAF-KYITAHFDKRLSATLY  350 (412)
T ss_dssp             HHHHH-HHHHHHS-GGGHHHHH
T ss_pred             HHHHH-HHHHHhCCHhHHHHHH
Confidence            55555 7999999999877654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PTZ00207 hypothetical protein; Provisional

Probab=92.12  E-value=0.068  Score=43.78  Aligned_cols=114  Identities=10%  Similarity=0.035  Sum_probs=58.7

Q ss_pred             hhhhchhHHHHhhHHHHHHc-CCCCchH-HHHHHHHHHHHHHhhhhhheeEecccCCc--------hh-hhHhhHHHHHH
Q 045175            5 QQFTGINTVMYYNPTIVQMA-SFQSNQL-ALLLSLAVAGTNAVGTIIGIYLIDHFGRK--------KL-ALSSLTGVIIS   73 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~grr--------~~-~~~~~~~~~~~   73 (177)
                      +...+...+...+-.+.+.. |.+.+.. .....++..+.+.+|.+..|.+....-||        +. +.+..+ +.+.
T Consensus       364 cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~  442 (591)
T PTZ00207        364 CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIIT  442 (591)
T ss_pred             HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHH
Confidence            33334444455566677777 6623220 11256777888888988888877222221        12 222222 3333


Q ss_pred             HHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccch
Q 045175           74 LVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGIC  132 (177)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~  132 (177)
                      .+++....   +        ...+.+...+.+.+.+..+.... ..++|+|- +.-|+-
T Consensus       443 ~lll~~~~---p--------~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~  488 (591)
T PTZ00207        443 MLTLFLTL---P--------KAALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKH  488 (591)
T ss_pred             HHHHHHHC---C--------ccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHH
Confidence            33322221   1        01244445555566666666666 78888887 554433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.44  E-value=0.47  Score=37.76  Aligned_cols=89  Identities=8%  Similarity=-0.142  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      ......+.+....++.++.+.+.|++|.|..+..+........+.+...            ..+.......+.+.+.+.-
T Consensus        52 Gy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~------------N~y~~yfssallG~Gaall  119 (461)
T KOG3098|consen   52 GYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP------------NSYYLYFSSALLGFGAALL  119 (461)
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc------------chHHHHHHHHHhhhhHHhe
Confidence            4555777788889999999999999999999998888777666443332            1455566667777777776


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      |..-. .|++|..+.+.+.+..
T Consensus       120 w~GqG-~ylt~~st~~tie~Ni  140 (461)
T KOG3098|consen  120 WTGQG-GYLTSNSTRETIERNI  140 (461)
T ss_pred             ecccc-eehhhcCChhhHHHHH
Confidence            76667 8999998887666554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.26  E-value=0.027  Score=41.63  Aligned_cols=53  Identities=23%  Similarity=0.144  Sum_probs=35.5

Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175           21 VQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL   74 (177)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~   74 (177)
                      ++.+|+.+.+ ...+........++...+.|.++||.|||+..+..++..++++
T Consensus        64 YstYgFgkG~-IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC  116 (454)
T KOG4332|consen   64 YSTYGFGKGD-IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC  116 (454)
T ss_pred             ehhcCccCCc-cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence            3566776666 4444444445556777788999999999998766555555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=90.47  E-value=0.84  Score=35.62  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=61.5

Q ss_pred             cCCCCchHHHHHHHHHHHHHHhhhhhheeEec-ccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 045175           24 ASFQSNQLALLLSLAVAGTNAVGTIIGIYLID-HFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLA  102 (177)
Q Consensus        24 ~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (177)
                      +|++..+ ...++.....+.++|-...+++.. |.++++...+++.+..++..++...-...+        .........
T Consensus       239 fgmsv~e-TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~--------~~~~~~~~~  309 (403)
T PF03209_consen  239 FGMSVGE-TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS--------PWLFRPGVF  309 (403)
T ss_pred             cCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc--------chHHHHHHH
Confidence            5788888 888999999998999888887655 677777777777777777665544322111        222333333


Q ss_pred             HHhhhhccccccccceeeccccccccccchh
Q 045175          103 LYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +++.+.+....... +...++.+++..|..+
T Consensus       310 l~G~g~G~f~vgal-s~mM~lt~~~~aG~~m  339 (403)
T PF03209_consen  310 LLGLGNGLFTVGAL-SLMMDLTSAGRAGLFM  339 (403)
T ss_pred             HHHHhhhHHHHHHH-HHHHhCCCCcchhHHH
Confidence            43433333333233 5666666666555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=90.32  E-value=0.083  Score=42.89  Aligned_cols=73  Identities=16%  Similarity=0.273  Sum_probs=0.0

Q ss_pred             hhhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC--CchhhhHhhHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG--RKKLALSSLTGVIISLV   75 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~   75 (177)
                      ...+.....+...|.|.++ .+++.+.+........+.-.+..+|.+++|++..|+.  .|+......+...+..+
T Consensus       314 ~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~  389 (539)
T PF03137_consen  314 GVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVI  389 (539)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence            3455566778889999999 6789988873333334444466899999999999974  45555544444444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=88.51  E-value=0.93  Score=36.53  Aligned_cols=99  Identities=7%  Similarity=-0.033  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCC--chh-----hhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGR--KKL-----ALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALY  104 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~gr--r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (177)
                      +.+..++..+..++.+++.+++-.|.+|  |..     +-.+.++.+++.+.+........++.  ..+..+ ++...++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~--~~s~~w-l~~~~~~  386 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYG--HSSLPL-MVLGLAV  386 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CcCHHH-HHHHHHH
Confidence            4556666666556666666655455522  211     45666666666655544332222211  112333 3333333


Q ss_pred             hhhhccccccccceeeccccccccccchh
Q 045175          105 ITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ....-....|+..+.++++.|++.|+..+
T Consensus       387 ~t~gEl~~sPvgls~~~~laP~~~~g~~m  415 (493)
T PRK15462        387 MGFAELFIDPVAMSQITRIEIPGVTGVLT  415 (493)
T ss_pred             HHHHHHHHChHHHHHHHHhChHHHHHHHH
Confidence            34444566778779999999999999887

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=87.70  E-value=0.26  Score=38.59  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             HHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175           18 PTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW   79 (177)
Q Consensus        18 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   79 (177)
                      |++... .|++.++....+.-+..-..+...++...+.|.+|-|++++.+.+...+...++..
T Consensus        28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~   90 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF   90 (412)
T ss_pred             HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            444443 58888774444444444455667777888999999999998888877777665544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=87.61  E-value=1.1  Score=35.74  Aligned_cols=97  Identities=8%  Similarity=-0.077  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhhhhhhe----eEecc-cCCchhh--hHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhh
Q 045175           34 LLSLAVAGTNAVGTIIGI----YLIDH-FGRKKLA--LSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYIT  106 (177)
Q Consensus        34 ~~~~~~~~~~~i~~~~~g----~l~d~-~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (177)
                      +...+..+..++..++..    ++.+| .+.+...  .++.++.+++....+.......++.  ..+.++.+....+.+.
T Consensus       316 ~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~--~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       316 WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGG--LTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--ccCHHHHHHHHHHHHH
Confidence            444444444455555433    44444 2223333  5666666666655443322211110  1113333333444333


Q ss_pred             hhccccccccceeeccccccccccchh
Q 045175          107 FFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       107 ~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +- ....|..+.+..+..|++.|++..
T Consensus       394 ge-~~~~p~~~~~~~~~aP~~~~g~~~  419 (475)
T TIGR00924       394 GE-LMISPLGLSWWTKIAPQRLMGQML  419 (475)
T ss_pred             HH-HHHhHHHHHHHHHhCCHHHHHHHH
Confidence            33 344556668999999999999887

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=85.34  E-value=1.9  Score=34.11  Aligned_cols=60  Identities=18%  Similarity=0.047  Sum_probs=36.7

Q ss_pred             hHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC----Cchh-hhHhhHHHHHHHHHHH
Q 045175           17 NPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG----RKKL-ALSSLTGVIISLVLLS   78 (177)
Q Consensus        17 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g----rr~~-~~~~~~~~~~~~~~~~   78 (177)
                      .|.+.+++|++..+ .........+. -..-++.|.++|.+.    ||+. ++++.++..++.+.++
T Consensus        13 ~~~l~~~l~ls~~~-~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~   77 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQ-LQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLA   77 (433)
T ss_pred             HHHHHHHcCCCHHH-HHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHH
Confidence            34455778999877 55555544443 356789999999862    4444 4555555544444333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=82.48  E-value=0.4  Score=39.00  Aligned_cols=64  Identities=16%  Similarity=-0.006  Sum_probs=0.0

Q ss_pred             HhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175           15 YYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW   79 (177)
Q Consensus        15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   79 (177)
                      ....++-+.+++++.+ ..++.+...++.++..++..++.+|-.|-+.+-.+.++++++.++++.
T Consensus        24 ~~lttiErRF~l~S~~-~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   24 SSLTTIERRFGLSSSQ-SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence            3345666889999998 899999999999999999999999977777777888888888776654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-10

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 76/206 (36%), Gaps = 55/206 (26%)
Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
           +  FQQF GIN V+YY P + +     S              N   T++ I  +D FGRK
Sbjct: 284 LSIFQQFVGINVVLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 342
Query: 61  KLALSSLTGVIISLVLLSWAFIXXXXXXXXEVYGWIAVIGLALYITFFAPGMGPVPWTVN 120
            L +    G+ I +  L  AF         +  G +A++ +  Y+  FA   GPV W + 
Sbjct: 343 PLQIIGALGMAIGMFSLGTAF-------YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLL 395
Query: 121 SEVYREQYR-----------------------------------------------GICG 133
           SE++    R                                               G+  
Sbjct: 396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455
Query: 134 VVFVILFVPETQGLTFLEVEHMWKER 159
            +F+  FVPET+G T  E+E +W+  
Sbjct: 456 ALFMWKFVPETKGKTLEELEALWEPE 481

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.81
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.24
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.2
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.1
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.94
2xut_A	524	Proton/peptide symporter family protein; transport	98.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.87
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.62
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.48
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.24
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.12
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.12
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.4
2xut_A	524	Proton/peptide symporter family protein; transport	93.89

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.81  E-value=9.4e-21  Score=147.28  Aligned_cols=150  Identities=35%  Similarity=0.640  Sum_probs=117.1

Q ss_pred             hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175            3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI   82 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~   82 (177)
                      .++++.+.+.+.+|.|.+.+..+.+... .........+...++.++++++.||+|||+.++.+.....++.+.++....
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~  364 (491)
T 4gc0_A          286 IFQQFVGINVVLYYAPEVFKTLGASTDI-ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY  364 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSSCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHhcchHHHHhcCCCccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence            4677888999999999999888887776 777777888889999999999999999999999988888887766655443


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh-----------------------------
Q 045175           83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG-----------------------------  133 (177)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~-----------------------------  133 (177)
                      ....       ....++...++...++.++++..|.+.+|++|++.|+++.                             
T Consensus       365 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~  437 (491)
T 4gc0_A          365 TQAP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA  437 (491)
T ss_dssp             TTCC-------HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred             cccc-------hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2221       3334444455556666777888889999999999999886                             


Q ss_pred             ------------------eeeeeEEeecCCCCCHHHHHHHHhhhc
Q 045175          134 ------------------VVFVILFVPETQGLTFLEVEHMWKERA  160 (177)
Q Consensus       134 ------------------~~~~~~~~pet~~~~~~~~~~~~~~~~  160 (177)
                                        .++.++++||||||++||+|+.++++.
T Consensus       438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence                              333457899999999999998887654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.24  E-value=4e-12  Score=95.49  Aligned_cols=113  Identities=10%  Similarity=-0.005  Sum_probs=83.2

Q ss_pred             hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175            8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA   87 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (177)
                      .+........|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.+......      
T Consensus        14 ~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------   86 (375)
T 2gfp_A           14 MAQTIYIPAIADMARDLNVREGA-VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS------   86 (375)
T ss_dssp             HHHHHHHHHHHHHHTTSSSTTHH-HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHhhhhHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc------
Confidence            34455556667777888999888 88888889999999999999999999999999999998888887665532      


Q ss_pred             CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                           .....++...+.+.+.+ ...+...++..|.+|+++|++..
T Consensus        87 -----~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  126 (375)
T 2gfp_A           87 -----SLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHAN  126 (375)
T ss_dssp             -----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHH
T ss_pred             -----cHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHH
Confidence                 12233333333333333 33444448999999999999776

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.20  E-value=7.7e-13  Score=102.66  Aligned_cols=100  Identities=18%  Similarity=0.033  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc-------chhHHHHHHHHHHHHh
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS-------SEVYGWIAVIGLALYI  105 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  105 (177)
                      .++.+...++.++|++++|+++||+|||+.++.+.++..++.++.+...........       ........++.+.+.+
T Consensus        58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G  137 (491)
T 4gc0_A           58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG  137 (491)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence            456666788889999999999999999999999999998888776642211000000       0111333444445545


Q ss_pred             hhhccccccccceeeccccccccccchh
Q 045175          106 TFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       106 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+.+......+ ++++|..|++.|+...
T Consensus       138 ~g~G~~~~~~~-~~i~E~~p~~~rg~~~  164 (491)
T 4gc0_A          138 IGVGLASMLSP-MYIAELAPAHIRGKLV  164 (491)
T ss_dssp             HHHHHHHHHHH-HHHHTTSCGGGHHHHH
T ss_pred             HHHHHHHHHHH-HHHHhhCCHHhhhhhH
Confidence            44444444444 9999999999999765

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.10  E-value=7.1e-11  Score=90.21  Aligned_cols=113  Identities=14%  Similarity=-0.075  Sum_probs=84.6

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      .......|.+.+++|.+..+ ..+......++..++.+++|+++||+|||+.++.+.++.+++.++......        
T Consensus        43 ~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------  113 (438)
T 3o7q_A           43 NLNDILLPQFQQAFTLTNFQ-AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--------  113 (438)
T ss_dssp             HHHHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HhHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--------
Confidence            45566678888999999988 888889999999999999999999999999999999998888876632211        


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .......++...+.+.+.+...... .++..|.+|++.|+...
T Consensus       114 ~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~  155 (438)
T 3o7q_A          114 IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRL  155 (438)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHH
T ss_pred             cccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHH
Confidence            0113334444445454444443344 48999999999999865

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.94  E-value=1.5e-10  Score=88.70  Aligned_cols=113  Identities=13%  Similarity=0.045  Sum_probs=80.9

Q ss_pred             hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175           11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS   90 (177)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (177)
                      .....+.|.+.+++ .+..+ ..+......++..++.+++|+++||+|||++++.+.++.+++.++.........+    
T Consensus        45 ~~~~~~~~~~~~~~-~s~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~----  118 (451)
T 1pw4_A           45 KNFALAMPYLVEQG-FSRGD-LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS----  118 (451)
T ss_dssp             TSHHHHHHHTTSST-TCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS----
T ss_pred             HHHHHHHHHHHHHh-ccHhH-HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc----
Confidence            33455677777777 88887 8888888999999999999999999999999999999888888766551110000    


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                         ....++...+.+.+.+... +...+++.|.+|++.|+...
T Consensus       119 ---~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~  157 (451)
T 1pw4_A          119 ---IAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIV  157 (451)
T ss_dssp             ---SSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHH
Confidence               1223344444444444333 34448999999999999876

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.88  E-value=2.6e-09  Score=83.51  Aligned_cols=113  Identities=10%  Similarity=-0.041  Sum_probs=80.1

Q ss_pred             hhchhHHHHhhHHHH-HHcC------CCCchHHHHHHHHHHHHHHhhhhhheeEeccc-CCchhhhHhhHHHHHHHHHHH
Q 045175            7 FTGINTVMYYNPTIV-QMAS------FQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-GRKKLALSSLTGVIISLVLLS   78 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~   78 (177)
                      ..+.+....+.+.++ +++|      .+..+ ..+......++..++.+++|+++||+ |||+.++.+.++.+++.++..
T Consensus        25 ~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~  103 (524)
T 2xut_A           25 RFSFYGMRNILTPFLMTALLLSIPEELRGAV-AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA  103 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT-HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            344455666677766 5678      88888 88888888999999999999999999 999999988888877776554


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccc
Q 045175           79 WAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGI  131 (177)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~  131 (177)
                      ...    .      .....++...+.+.+.+.. .+...++..|.+|++.|+.
T Consensus       104 ~~~----~------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~  145 (524)
T 2xut_A          104 IFE----H------SVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSL  145 (524)
T ss_dssp             HTS----S------CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTH
T ss_pred             Hhc----c------cHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHH
Confidence            421    0      1233344444444444433 3444489999999999863

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.87  E-value=1e-09  Score=85.11  Aligned_cols=111  Identities=13%  Similarity=0.029  Sum_probs=79.0

Q ss_pred             hhchhHHHHhhHHHH-HH-----cCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHH
Q 045175            7 FTGINTVMYYNPTIV-QM-----ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSW   79 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~-----~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~   79 (177)
                      ..+.+....+.+.+. +.     +|.+..+ ..+......++..++.+++|+++|| +|||++++.+.++..++.++...
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~  104 (491)
T 4aps_A           26 RFSYYGMRAILLYYMWFLISTGDLHITRAT-AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL  104 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCCSCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhccchhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666 44     8998888 8888888999999999999999999 89999999998888887765543


Q ss_pred             HHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccccc
Q 045175           80 AFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG  130 (177)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~  130 (177)
                      .     ++      ....++...+.+.+.+.. .+...++..|.+|++.|+
T Consensus       105 ~-----~~------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~  143 (491)
T 4aps_A          105 P-----FG------ASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRR  143 (491)
T ss_dssp             C-----CS------TTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTH
T ss_pred             h-----hh------HHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCccccc
Confidence            1     11      223344444444444433 344448999999998843

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.62  E-value=3.5e-08  Score=75.21  Aligned_cols=112  Identities=14%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             hhchhHHHHhhHHH-HHHc-CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175            7 FTGINTVMYYNPTI-VQMA-SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG   84 (177)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~   84 (177)
                      .........|.|.+ .++. |.+..+ .........++..++.++.++++||+|||+.+..+.++..++.++.....   
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~---  346 (438)
T 3o7q_A          271 VGAQTACWSYLIRYAVEEIPGMTAGF-AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG---  346 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHHhhhccCCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC---
Confidence            33445666788888 7665 888887 77888888899999999999999999999999888877776665443311   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                               .....+...+.+.+.+.. .+..+.+..|.+|++ |+.+.
T Consensus       347 ---------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~  384 (438)
T 3o7q_A          347 ---------GHVGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGS  384 (438)
T ss_dssp             ---------HHHHHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHH
T ss_pred             ---------CcHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchh
Confidence                     112222233334343333 345558888999977 66554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.48  E-value=3.3e-08  Score=75.60  Aligned_cols=118  Identities=9%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             hhhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc--CCchhhhHhhHHHH-HHHHHHHHH
Q 045175            5 QQFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF--GRKKLALSSLTGVI-ISLVLLSWA   80 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~   80 (177)
                      ....+.+....+.|.+.++ .|.+..+ .........++..++.++.+++.||+  |||+.+..+..+.. ++.+++.. 
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  340 (451)
T 1pw4_A          263 FVYLLRYGILDWSPTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-  340 (451)
T ss_dssp             HHHHHHHHHHHHHHHHBTTBSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-
Confidence            3444556677888888866 7888877 77788888899999999999999999  99998877666554 33322111 


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                         ....     ......+...+.+.+.+. ..+..+.+..|.+|++.|+++.
T Consensus       341 ---~~~~-----~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~  384 (451)
T 1pw4_A          341 ---NPAG-----NPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAA  384 (451)
T ss_dssp             ---CCTT-----CHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHH
T ss_pred             ---hccc-----CHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHH
Confidence               1110     122233333333333332 3334448999999999999876

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.24  E-value=6.1e-08  Score=75.13  Aligned_cols=117  Identities=12%  Similarity=-0.053  Sum_probs=64.8

Q ss_pred             HHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhh-----HhhHHHHHHHHHHHHHHHhcCC
Q 045175           13 VMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLAL-----SSLTGVIISLVLLSWAFISGSS   86 (177)
Q Consensus        13 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~   86 (177)
                      ...+.|.+.++ .+.+..+ .........+...++.++.+++.||+|||+...     .+..+.+++.+...........
T Consensus       302 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4aps_A          302 GSVVLATFAAERVDSSWFP-VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT  380 (491)
T ss_dssp             GGTHHHHHHHHSCCCSSSC-SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred             ccHHHHHHHHHHhccCccC-HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33445556644 4555333 445566667777888999999999999987655     5555555554443332221111


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      +.  ........+...+.+.+.+. ..+..+.+..|.+|++.|+++.
T Consensus       381 ~~--~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~  424 (491)
T 4aps_A          381 SG--KVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMM  424 (491)
T ss_dssp             CT--TCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSST
T ss_pred             CC--CccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHH
Confidence            10  00122233333333333332 2344458999999999999887

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.12  E-value=4.8e-07  Score=68.98  Aligned_cols=89  Identities=12%  Similarity=0.006  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175           33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (177)
                      .....+..++..++.++.++++||+|||+.+..+..+.++..+....     ..+      .....+...+.+.... ..
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~l~~~~~~-~~  329 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----ATS------ALEVVILKTLHMFEVP-FL  329 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----CCS------HHHHHHHTTHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----hcc------HHHHHHHHHHHHHHHH-HH
Confidence            44555566677889999999999999999988777666655433321     111      1222222222222222 12


Q ss_pred             ccccceeeccccccccccchh
Q 045175          113 GPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       113 ~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+..+.+.+|.+|++.|+++.
T Consensus       330 ~~~~~~~~~~~~p~~~~g~~~  350 (417)
T 2cfq_A          330 LVGCFKYITSQFEVRFSATIY  350 (417)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHH
Confidence            223358999999999998754

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.12  E-value=1e-06  Score=67.23  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=51.4

Q ss_pred             hchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHH
Q 045175            8 TGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVII   72 (177)
Q Consensus         8 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~   72 (177)
                      .+......+.|.+.+ ++|.+..+ .........++..++.+++|+++||+|||++++.+..+..+
T Consensus        21 ~~~~~~~~~~~~~l~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A           21 FIMGAYFPFFPIWLHDINHISKSD-TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHTTTHHHHHHTTTCCCTTT-SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            344444567788774 47998887 77888888999999999999999999999998877766543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.40  E-value=3.3e-06  Score=63.10  Aligned_cols=116  Identities=14%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             hhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHH-HHHHHHHHHHHHHh
Q 045175            6 QFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTG-VIISLVLLSWAFIS   83 (177)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~   83 (177)
                      ...+......+.|.+.++ .|.+..+ .........++..++.++.+++.||+|||.  ..+... ...+......... 
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~-  286 (375)
T 2gfp_A          211 GLAGIAAFEACSGVLMGAVLGLSSMT-VSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF-  286 (375)
T ss_dssp             HHHHHHHHHHHCSCSSHHHHHHHHHH-HHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh-
Confidence            334455566667777644 6777766 677777788888999999999999988732  222222 1111111011000 


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .      ........+...+.+.+.+.. .+..+.+..|.+| +.|+++.
T Consensus       287 ~------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~  328 (375)
T 2gfp_A          287 G------VMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAG  328 (375)
T ss_dssp             H------HHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHH
T ss_pred             c------cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHH
Confidence            0      001222223333434333333 3444588999999 7888776

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=93.89  E-value=0.0089  Score=46.43  Aligned_cols=21  Identities=5%  Similarity=-0.050  Sum_probs=17.2

Q ss_pred             ccccceeeccccccccccchh
Q 045175          113 GPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       113 ~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      .+..+.+..|..|++.|+++.
T Consensus       423 ~~~~~~~~~~~~p~~~~g~~~  443 (524)
T 2xut_A          423 SATGLEFAYSQAPKAMKGTIM  443 (524)
T ss_dssp             HHHHTTTHHHHCCTTCCTTTH
T ss_pred             HHHHHHHHHHhCcHHHHhHHH
Confidence            444558999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.18
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.8
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.36
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.17

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.7e-13  Score=100.88  Aligned_cols=110  Identities=13%  Similarity=0.035  Sum_probs=78.9

Q ss_pred             HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175           14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY   93 (177)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (177)
                      ....|.+ ++.|++..+ ..++.+...++..++.+++|+++||+|||++++.+.++.+++.++.+........       
T Consensus        45 ~~~~p~~-~~~g~s~~~-~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------  115 (447)
T d1pw4a_          45 ALAMPYL-VEQGFSRGD-LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS-------  115 (447)
T ss_dssp             HHHHHHT-TSSTTCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS-------
T ss_pred             HHHHHHH-HHhCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh-------
Confidence            3334543 567999998 8888899999999999999999999999999999999888887766653321111       


Q ss_pred             HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ....++...+.+.+.+....+.. .+..|.+|++.|+...
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~~~~~r~~~~  154 (447)
T d1pw4a_         116 IAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIV  154 (447)
T ss_dssp             SSHHHHHHHHHHHHHHHTHHHHH-HHHHTTCTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHhhcccccc
Confidence            11233334444444343334444 8999999999999876

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=2.1e-10  Score=84.02  Aligned_cols=74  Identities=14%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             hhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175            5 QQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW   79 (177)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   79 (177)
                      ....+......+.|.++ ++.|.+..+ ..++.++..++..++.++.|+++||+|||+.++.+..+..++......
T Consensus        18 ~~~~~~~~~~~~l~~~l~~~~g~s~~~-~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~   92 (417)
T d1pv7a_          18 FYFFIMGAYFPFFPIWLHDINHISKSD-TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI   92 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            33444455556677766 567999988 888889999999999999999999999999999888777776655544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.6e-07  Score=69.60  Aligned_cols=119  Identities=9%  Similarity=0.056  Sum_probs=73.2

Q ss_pred             hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175            7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS   85 (177)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~   85 (177)
                      ....+....+.|.+. +..+.+..+ .........+...++.++.|++.||++||+..........+..+...... ...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  339 (447)
T d1pw4a_         262 YLLRYGILDWSPTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-MNP  339 (447)
T ss_dssp             HHHHHHHHHHHHHHBTTBSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT-SCC
T ss_pred             hhhhhcchhhhhhhcccccccccch-hhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH-hcc
Confidence            334456666777777 445777777 77788888888999999999999999988765544443333332222111 111


Q ss_pred             CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175           86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      ..     ......+.....+... .+..+..+.+..|.+|++.|+++.
T Consensus       340 ~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~  381 (447)
T d1pw4a_         340 AG-----NPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAA  381 (447)
T ss_dssp             TT-----CHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             cc-----cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHH
Confidence            11     1223333333333222 233444558899999999998776

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=5.9e-08  Score=70.57  Aligned_cols=90  Identities=13%  Similarity=-0.003  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175           32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (177)
                      .........++..++..+.+++.||+|||+.+..+.++.+++.+.....     +      ......+...+.+.+.+..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~l~g~~~~~~  329 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----T------SALEVVILKTLHMFEVPFL  329 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-----C------CHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-----c------ccchhhHHHHHHHHHHHHH
Confidence            3445556667778899999999999999999988888777776554431     1      1333344344444444433


Q ss_pred             cccccceeeccccccccccchh
Q 045175          112 MGPVPWTVNSEVYREQYRGICG  133 (177)
Q Consensus       112 ~~~~~~~~~~e~~p~~~R~~~~  133 (177)
                      . +..+.+..|.+|++.|++..
T Consensus       330 ~-~~~~~~~~~~~~~~~~~~~~  350 (417)
T d1pv7a_         330 L-VGCFKYITSQFEVRFSATIY  350 (417)
T ss_dssp             H-HHHHHHHHHHSCGGGHHHHH
T ss_pred             H-HHHHHHHHHHCCHhHHHHHH
Confidence            3 34448999999999998765