Citrus Sinensis ID: 045186

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
Protein Sequence
MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGSDHLWLLYLSRQRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCFTSYNLNEFHHDFVGSDMAVAEARGSVCWDDYDEKPQPKRFRPLE
Secondary Structure (PSIPRED)
cccccEEEccccccEEccccccccccccEEEcccccccEEccccccccccccEEEEEcccccccccccccccccccEEEccccccccccccccccccccEEEEcccccccccHHHHccccccccccccccccccccEEEcccccccccccEEEEcccccccccccccccccEEEcccccccccccccccccHHHHHHcccccccEEEEEccccccccccccccccEEEEEcccccccccccEEEEEEEEEEccccccccEEEEccEEEEEEEEEcccccEEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccccccccHHHHHcccEEEccccccHcccccccccHHHccEEEcccccHHHHccHHcccHHHHEEEEcccccEEcccccHHccHcccEEEccccccHccccccccccccHHHHHHHHHcccccccccccHHHHHHcccEEEcccccHHcccccccccccEEEcccccHHcccccHHcHHHHHHHHHHccccccEEEcccccccHHHcccccccEEEEEcccccccccccccEEEEEEEEcccccccccccEEEEEEEEEEcccccEEEcccccccccccccccEEEEEEEcccccccccccccccccEEEEEEEEEccccccccccEEEEEcEEEEEEEccccccccccccEEcccccccccccccccccHHHHHHcccccccccccccccccHccccc
Coil and Loop (DISEMBL)
MECLREllldgtdikelPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRnlklsgcsklkkFPQIVASMEDLLELYldgtsitevpssIELLHGLellnlnncknLWTTIIYIMAFARSfqfdgkefisCSFDVVFSVSISgllnlkelelEDCKrlqslpqippnlwlvrangCSSLVTLSGalnlrkseytavsnpshklsivvpgseipkwfmyqnegssitvtrpsyfynmnKVVGYAICCVfhvpkhsigiKIWRSYATYQLecsmdgsgtisyIDFREIFGHCGSDHLWLLYLSrqrcydtnwhfesnhfrlSFIDFRekfgmagsdpvlkvkrfsfhpvymheveefdqttkqwtcftsynlnefhhdfvgsDMAVAEARgsvcwddydekpqpkrfrple
Flexible Loop (DISEMBL)
MECLREllldgtdikelPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEytavsnpshklsIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGSDHLWLLYLSRQRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCFTSYNLNEFHHDFVGSDMAVAEARGSVcwddydekpqpkrfrple
Low Complexity Region (SEG)
MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIellhglellnlnncknlWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGSDHLWLLYLSRQRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCFTSYNLNEFHHDFVGSDMAVAEARGSVCWDDYDEKPQPKRFRPLE
Disordered region (IsUnstruct)
***LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGSDHLWLLYLSRQRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCFTSYNLNEFHHDFVGSDMAVAEARGSVCWDDY*************
Disordered Region (DISOPRED)
MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGSDHLWLLYLSRQRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHE**********************************************************
Disordered Region (DISEMBL)
MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGSDHLWLLYLSRQRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCFTSYNLNEFHHDFVGSDMAVAEARGSVCWDDYDEKPQPKRFRPLE
Disordered Region (DISPRO)
*ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGSDHLWLLYLSRQRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEV*******KQWTCFTSYNLNEFHHDFVGSD*AV**A**SVCWDD***KPQPK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGSDHLWLLYLSRQRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCFTSYNLNEFHHDFVGSDMAVAEARGSVCWDDYDEKPQPKRFRPLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	411	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.581	0.208	0.282	6e-17
Q9FL92	1372	Probable WRKY transcripti	no	no	0.321	0.096	0.362	2e-11
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.255	0.055	0.424	3e-10
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.394	0.124	0.306	5e-10
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.260	0.066	0.359	1e-07
P0CB16	1201	Putative disease resistan	no	no	0.430	0.147	0.301	4e-07
O82500	1095	Putative disease resistan	no	no	0.613	0.230	0.237	6e-07
A6H6A4	596	Leucine-rich repeat and I	yes	no	0.245	0.169	0.365	6e-06
P49606	2493	Adenylate cyclase OS=Usti	N/A	no	0.233	0.038	0.343	2e-05
Q9FH83	1288	Probable WRKY transcripti	no	no	0.330	0.105	0.314	4e-05

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 89.0 bits (219), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 136/301 (45%), Gaps = 62/301 (20%)

Query: 6    ELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKK 64
            ++ + G+ I+ELP SI +  + + +L L   KNL++LP +I  LK L +L +SGCSKL+ 
Sbjct: 716  QIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLES 775

Query: 65   FPQIVASMEDLLELYLDGTSITEVPSSI--------------------------ELLHGL 98
             P+ +  +++L       T I   PSSI                          E LH L
Sbjct: 776  LPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSL 835

Query: 99   ELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158
            E LNL+ C  +   +   +    S +    +    +F+ + S SI+ L  L+ L+L+DC+
Sbjct: 836  EYLNLSYCNLIDGGLPEEIGSLSSLK--KLDLSRNNFEHLPS-SIAQLGALQSLDLKDCQ 892

Query: 159  RLQSLPQIPPNL---------------WLVRANGCSSLVTLSGALN------LRKSEYTA 197
            RL  LP++PP L               +LV        V L  A N         + +  
Sbjct: 893  RLTQLPELPPELNELHVDCHMALKFIHYLVTKRKKLHRVKLDDAHNDTMYNLFAYTMFQN 952

Query: 198  VSNPSHKLS-------IVVPGS----EIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAI 246
            +S+  H +S        V  G     +IP WF +Q   SS++V  P  +Y  +K +G+A+
Sbjct: 953  ISSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAV 1012

Query: 247  C 247
            C
Sbjct: 1013 C 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 39/171 (22%)

Query: 30  LSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVP 89
           + L+GC  L S P A   L  LR + LSGC+++K FP+I  ++E    L L GT I E+P
Sbjct: 620 VDLQGCTRLQSFP-ATGQLLHLRVVNLSGCTEIKSFPEIPPNIE---TLNLQGTGIIELP 675

Query: 90  SSIELLHGLELLN-------LNNCKNLWTT----IIYIMAFARSFQFDGKEFISCSFDVV 138
            SI   +  ELLN       L+   NL  +    +  +M  + S+Q  GK  +SC     
Sbjct: 676 LSIVKPNYRELLNLLAEIPGLSGVSNLEQSDLKPLTSLMKISTSYQNPGK--LSC----- 728

Query: 139 FSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRA---NGCSSLVTLSG 186
                        LEL DC RL+SLP +  NL L++A   +GCS L T+ G
Sbjct: 729 -------------LELNDCSRLRSLPNM-VNLELLKALDLSGCSELETIQG 765

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 1/106 (0%)

Query: 4    LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
            ++EL + GT I+E+P SI+ L  L +L L+  ++L +LP +I  LK L  L LSGC  L+
Sbjct: 1351 VKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLE 1410

Query: 64   KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGL-ELLNLNNCKN 108
            +FP     M+ L  L L  T I E+PSSI  L  L ELL +++ +N
Sbjct: 1411 RFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDELLFVDSRRN 1456

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 93/209 (44%), Gaps = 47/209 (22%)

Query: 17   LPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLL 76
            LP +I  L  LV+L +K C  L  LP  ++ L  L  L LSGCS L+ FP I     +++
Sbjct: 812  LPSTIGNLHRLVRLEMKECTGLEVLPTDVN-LSSLETLDLSGCSSLRSFPLIST---NIV 867

Query: 77   ELYLDGTSITEVPSSIELLH-----------------------GLELLNLNNCKNL---- 109
             LYL+ T+I E+PS+I  LH                        LE L+L+ C +L    
Sbjct: 868  WLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSSLRSFP 927

Query: 110  -------W-----TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC 157
                   W     T I  I   +++      +  +C   V    +I  L  L   E+++C
Sbjct: 928  LISESIKWLYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKEC 987

Query: 158  KRLQSLPQIPPN---LWLVRANGCSSLVT 183
              L+ LP I  N   L ++  +GCSSL T
Sbjct: 988  TGLEVLP-IDVNLSSLMILDLSGCSSLRT 1015

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 7/114 (6%)

Query: 12  TDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVAS 71
           T++  +  +  ++  LV L++K C NL  LP  +S L+ L+ L LSGCS+L+K   I+  
Sbjct: 735 TNLATVTSNNHVMGKLVCLNMKYCSNLRGLPDMVS-LESLKVLYLSGCSELEK---IMGF 790

Query: 72  MEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQF 125
             +L +LY+ GT+I E+P   +L + LE LN + CK+L +  +      R F F
Sbjct: 791 PRNLKKLYVGGTAIRELP---QLPNSLEFLNAHGCKHLKSINLDFEQLPRHFIF 841

Arabidopsis thaliana (taxid: 3702)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 22/199 (11%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           LR L +  T + EL  +I  +  L +L L+ C  +  LP +I  L  L    +SGC KLK
Sbjct: 681 LRILDMSKTSLPELADTIADVVNLNKLLLRNCSLIEELP-SIEKLTHLEVFDVSGCIKLK 739

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWT----------TI 113
                   M  L E+ L  T+++E+P  I  L  L+ L +  C  L T           I
Sbjct: 740 NINGSFGEMSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLPNLEKLTNLEI 799

Query: 114 IYIMAFARSFQFDGK-EFISCSFDVVFSVS--------ISGLLNLKELELEDCKRLQSLP 164
             +         +G  E +SC   V  S +        IS L NLKEL L +C +L++LP
Sbjct: 800 FDVSGCTELETIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALP 859

Query: 165 QIPP--NLWLVRANGCSSL 181
            +    +L +   +GC++L
Sbjct: 860 NLEKLTHLVIFDVSGCTNL 878

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 51/303 (16%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           LR + L+ +   E+  ++   + L +L L  C++L+ LP +I +L+ L  L++S C KL+
Sbjct: 633 LRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLE 692

Query: 64  KFPQIV--ASME------------------DLLELYLDGTSITEVPSSIELLHGLELLNL 103
             P  +   S+E                  ++  L L GT+ITEVP S++    ++ + +
Sbjct: 693 IIPTNINLPSLEVLHFRYCTRLQTFPEISTNIRLLNLIGTAITEVPPSVKYWSKIDEICM 752

Query: 104 NNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS 162
              K      + Y++   +    + KE  +    + +      L  L+ +++  C  + S
Sbjct: 753 ERAKVKRLVHVPYVL--EKLCLRENKELETIPRYLKY------LPRLQMIDISYCINIIS 804

Query: 163 LPQIPPNLWLVRANGCSSLVTLSG---------------ALNLRKSEYTAVSNPSHK--- 204
           LP++P ++  + A  C SL  L G                L  R  E    S   H+   
Sbjct: 805 LPKLPGSVSALTAVNCESLQILHGHFRNKSIHLNFINCLKLGQRAQEKIHRSVYIHQSSY 864

Query: 205 LSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIG--IKIW 262
           ++ V+PG  +P +F Y++ GSSI +   S   +++K   + +C V    K   G  IK +
Sbjct: 865 IADVLPGEHVPAYFSYRSTGSSIMIH--SNKVDLSKFNRFKVCLVLGAGKRFEGCDIKFY 922

Query: 263 RSY 265
           + +
Sbjct: 923 KQF 925

Arabidopsis thaliana (taxid: 3702)

>sp|A6H6A4|LRIQ4_MOUSE Leucine-rich repeat and IQ domain-containing protein 4 OS=Mus musculus GN=Lrriq4 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 3/104 (2%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSG-- 58
           ++ L  L LD   +++LP SI LLS L  L L G  +LLS P  I SL  L  L +    
Sbjct: 361 LKNLEILALDDNKVRQLPPSISLLSNLKILGLTG-NDLLSFPEEIFSLISLEKLYIGQDQ 419

Query: 59  CSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLN 102
            SKL   P+ +  + +L ELY++   + ++P+S+ L+  LE+L+
Sbjct: 420 GSKLSSLPENIKRLMNLKELYIENNRLEQLPASLGLMPNLEVLD 463

Mus musculus (taxid: 10090)

>sp|P49606|CYAA_USTMA Adenylate cyclase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UAC1 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 2    ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
            E L  L +    I EL  VS++L+  L+ L ++  + L  LP   SS+  LRNL +S  +
Sbjct: 1156 ETLTHLDVSNNRIVELAHVSLDLIPELMSLKVQNNR-LFDLPSYFSSISTLRNLNISN-N 1213

Query: 61   KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLE 99
            + ++FP+++  +  L++L +   SITE+P+ I  L  LE
Sbjct: 1214 RFEEFPKVICDVPSLVDLDVSFNSITELPAEIANLINLE 1252

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 23/159 (14%)

Query: 30  LSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVP 89
           + L+GC  L + P A   L+ LR + LSGC K+K   +I  ++E   +L+L GT I  +P
Sbjct: 627 IDLQGCTRLQNFPAAGRLLR-LRVVNLSGCIKIKSVLEIPPNIE---KLHLQGTGILALP 682

Query: 90  SSIELLHGLELLN-LNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLN 148
            S    +  EL+N L     L   +  + +   S                 + S   L  
Sbjct: 683 VSTVKPNHRELVNFLTEIPGLSEELERLTSLLES-----------------NSSCQDLGK 725

Query: 149 LKELELEDCKRLQSLPQIPP-NLWLVRANGCSSLVTLSG 186
           L  LEL+DC  LQSLP +   +L ++  +GCSSL ++ G
Sbjct: 726 LICLELKDCSCLQSLPNMANLDLNVLDLSGCSSLNSIQG 764

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
359496026	1250	PREDICTED: TMV resistance protein N-like	0.922	0.303	0.318	6e-42
296090591	771	unnamed protein product [Vitis vinifera]	0.922	0.491	0.318	7e-42
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.909	0.310	0.298	4e-41
224146780	540	predicted protein [Populus trichocarpa]	0.900	0.685	0.300	4e-40
359486075	1291	PREDICTED: TMV resistance protein N-like	0.708	0.225	0.356	4e-38
147770134	1414	hypothetical protein VITISV_040107 [Viti	0.708	0.205	0.356	4e-38
359495285	1557	PREDICTED: TMV resistance protein N-like	0.768	0.202	0.319	5e-38
224116210	1017	tir-nbs-lrr resistance protein [Populus	0.739	0.298	0.319	2e-34
296081002	599	unnamed protein product [Vitis vinifera]	0.807	0.554	0.299	3e-34
359493273	1233	PREDICTED: TMV resistance protein N-like	0.885	0.295	0.280	4e-34

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 220/464 (47%), Gaps = 85/464 (18%)

Query: 1    MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
            ME LREL LDGT IKELP+S+E L+GLV L+L+ C+ L++LP +I +LK L  L LSGCS
Sbjct: 743  MEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRNCERLITLPSSICNLKSLSTLTLSGCS 802

Query: 61   KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK----NLWTTIIYI 116
            +L+K P+ + ++E L+EL  DG+++ + PSSI LL  L++L+   C     + W +  + 
Sbjct: 803  QLEKLPENLGNLECLVELVADGSAVIQPPSSIVLLRNLKVLSFQGCNGSPSSRWNSRFWS 862

Query: 117  MAFARSFQ--------------------------------------FDGKEFISCSFD-- 136
            M   R                                             E+++   +  
Sbjct: 863  MLCLRRISDSTGFRLPSLSGLCSLKQLNLSDCNIKEGALPNDLGGYLSSLEYLNLKGNDF 922

Query: 137  VVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSG---------- 186
            V     IS L NLK L L  CKRLQ LP +PPN+  + A  C+SL TLSG          
Sbjct: 923  VTLPTGISKLCNLKALYLGCCKRLQELPMLPPNINRINAQNCTSLETLSGLSAPCWLAFT 982

Query: 187  ---ALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVG 243
                 N  +  Y A  +   K +  +PG+ IP+WF  Q  G SI V  PS++YN N  +G
Sbjct: 983  NSFRQNWGQETYLAEVSRIPKFNTYLPGNGIPEWFRNQCMGDSIMVQLPSHWYNDN-FLG 1041

Query: 244  YAICCVFHVPKHSIGIKIWRSYATYQLECS-MDGSGTISYIDFREIFGHCG------SDH 296
            +A+C VF + + +   +  R     +LE S +D S    ++D     GH        SDH
Sbjct: 1042 FAMCIVFALKEPN---QCSRGAMLCELESSDLDPSNLGCFLDHIVWEGHSDGDGFVESDH 1098

Query: 297  LWLLYLSR--QRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEV 354
            LWL Y      +  D +W  + +H + SF+       +AG     +VK   F  VYM ++
Sbjct: 1099 LWLGYHPNFPIKKDDMDWPNKLSHIKASFV-------IAGIPH--EVKWCGFRLVYMEDL 1149

Query: 355  EEFDQTTKQWTCFTSYNLNEFHHDFVGSDMAVAEARGSVCWDDY 398
               D  +K     T Y+        V  D+  +  + ++  D+Y
Sbjct: 1150 N--DDNSK----ITKYSPLPKKSSVVLQDLDESATKDTIIHDEY 1187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090591|emb|CBI40960.3| unnamed protein product [Vitis vinifera]

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 220/464 (47%), Gaps = 85/464 (18%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
           ME LREL LDGT IKELP+S+E L+GLV L+L+ C+ L++LP +I +LK L  L LSGCS
Sbjct: 249 MEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRNCERLITLPSSICNLKSLSTLTLSGCS 308

Query: 61  KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK----NLWTTIIYI 116
           +L+K P+ + ++E L+EL  DG+++ + PSSI LL  L++L+   C     + W +  + 
Sbjct: 309 QLEKLPENLGNLECLVELVADGSAVIQPPSSIVLLRNLKVLSFQGCNGSPSSRWNSRFWS 368

Query: 117 MAFARSFQ--------------------------------------FDGKEFISCSFD-- 136
           M   R                                             E+++   +  
Sbjct: 369 MLCLRRISDSTGFRLPSLSGLCSLKQLNLSDCNIKEGALPNDLGGYLSSLEYLNLKGNDF 428

Query: 137 VVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSG---------- 186
           V     IS L NLK L L  CKRLQ LP +PPN+  + A  C+SL TLSG          
Sbjct: 429 VTLPTGISKLCNLKALYLGCCKRLQELPMLPPNINRINAQNCTSLETLSGLSAPCWLAFT 488

Query: 187 ---ALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVG 243
                N  +  Y A  +   K +  +PG+ IP+WF  Q  G SI V  PS++YN N  +G
Sbjct: 489 NSFRQNWGQETYLAEVSRIPKFNTYLPGNGIPEWFRNQCMGDSIMVQLPSHWYNDN-FLG 547

Query: 244 YAICCVFHVPKHSIGIKIWRSYATYQLECS-MDGSGTISYIDFREIFGHCG------SDH 296
           +A+C VF + + +   +  R     +LE S +D S    ++D     GH        SDH
Sbjct: 548 FAMCIVFALKEPN---QCSRGAMLCELESSDLDPSNLGCFLDHIVWEGHSDGDGFVESDH 604

Query: 297 LWLLYLSR--QRCYDTNWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEV 354
           LWL Y      +  D +W  + +H + SF+       +AG     +VK   F  VYM ++
Sbjct: 605 LWLGYHPNFPIKKDDMDWPNKLSHIKASFV-------IAGIPH--EVKWCGFRLVYMEDL 655

Query: 355 EEFDQTTKQWTCFTSYNLNEFHHDFVGSDMAVAEARGSVCWDDY 398
              D  +K     T Y+        V  D+  +  + ++  D+Y
Sbjct: 656 N--DDNSK----ITKYSPLPKKSSVVLQDLDESATKDTIIHDEY 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 150/502 (29%), Positives = 220/502 (43%), Gaps = 128/502 (25%)

Query: 2    ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
            +CLR+L LD T I+ELP SI+ L GL+ LSLK CK L  LP +I+ LK L+ L LSGCS+
Sbjct: 737  KCLRKLCLDQTSIEELPPSIQYLVGLISLSLKDCKKLSCLPSSINGLKSLKTLHLSGCSE 796

Query: 62   LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK-------NLWTTII 114
            L+  P+    +E L EL + GT+I E P SI  L  L++L+ + C        N+W  ++
Sbjct: 797  LENLPENFGQLECLNELDVSGTAIREPPVSIFSLKNLKILSFHGCAESSRSTTNIWQRLM 856

Query: 115  Y--------------------------------------------IMAFARSFQFDGKEF 130
            +                                             ++  R       +F
Sbjct: 857  FPLMPGKRANSTSLVLPSLSGLSSLTRLGLSNCNLGEGAVPNDIGYLSSLRQLNLSRNKF 916

Query: 131  ISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNL 190
            +S         SI  L  L+ L +EDCK LQSLP++P NL   R NGC+SL  +  +  L
Sbjct: 917  VS------LPTSIDQLSGLQFLRMEDCKMLQSLPELPSNLEEFRVNGCTSLEKMQFSRKL 970

Query: 191  --------------RKSE---------------YTAVSNPSHKLSIVVPGSEIPKWFMYQ 221
                          R SE               +    N     S+++PGSEIP WF +Q
Sbjct: 971  CQLNYLRYLFINCWRLSESDCWNNMFPTLLRKCFQGPPNLIESFSVIIPGSEIPTWFSHQ 1030

Query: 222  NEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTIS 281
            +EGSS++V  P + +  ++ +GYA+C     P       ++RS     ++C  +G G  S
Sbjct: 1031 SEGSSVSVQTPPHSHENDEWLGYAVCASLGYP--DFPPNVFRS----PMQCFFNGDGNES 1084

Query: 282  ---YIDFR--EIFGHCGSDHLWLLYL-SRQRCYDTNWHFESNHFRLSFIDFREKFGMAGS 335
               Y+  +  EI     SDHLW LY  SR + +D        H R  F D   +      
Sbjct: 1085 ESIYVRLKPCEIL----SDHLWFLYFPSRFKRFD-------RHVRFRFEDNCSQ------ 1127

Query: 336  DPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCFTSYNLNEFHHD-------FVGSDMAVAE 388
                KV +     VY  +VEE ++ T  +   T   ++E   +        +G    V E
Sbjct: 1128 ---TKVIKCGVRLVYQQDVEELNRMTNLYENSTFEGVDECFQESGGALVKRLGHTNDVGE 1184

Query: 389  ARGSVCWDDYDEKPQPKRFRPL 410
            A GSV     DE+P  K+ + +
Sbjct: 1185 ASGSV---SSDEQPPTKKLKQI 1203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146780|ref|XP_002336335.1| predicted protein [Populus trichocarpa] gi|222834747|gb|EEE73210.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 154/512 (30%), Positives = 218/512 (42%), Gaps = 142/512 (27%)

Query: 2   ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
           +CLR+L LD T I+ELP SI+ L GL+ LSLK CK L  LP +I+ LK L+ L LSGCS+
Sbjct: 64  KCLRKLCLDQTSIEELPPSIQYLVGLISLSLKDCKKLSCLPSSINGLKSLKTLHLSGCSE 123

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK-------NLWTTII 114
           L+  P+    +E L EL + GT+I E P SI  L  L++L+ + C        N+W  ++
Sbjct: 124 LENLPENFGQLECLNELDVSGTAIREPPVSIFSLKNLKILSFHGCAESSRSTTNIWQRLM 183

Query: 115 Y--------------------------------------------IMAFARSFQFDGKEF 130
           +                                             ++  R       +F
Sbjct: 184 FPLMPGKRANSTSLVLPSLSGLSSLTRLGLSNCNLGEGAVPNDIGYLSSLRQLNLSRNKF 243

Query: 131 ISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALN- 189
           +S         SI  L  LK L +EDCK LQSLPQ+PPNL L+R NGC+SL  +  + N 
Sbjct: 244 VS------LPTSIDQLSGLKFLYMEDCKMLQSLPQLPPNLELLRVNGCTSLEKMQFSSNP 297

Query: 190 -------------LRKSEYTAVSNPSHKL---------------SIVVPGSEIPKWFMYQ 221
                         R SE    +N  H L               S+ +PGSEIP WF +Q
Sbjct: 298 YKFNCLSFCFINCWRLSESDCWNNMFHTLLRKCFQGPPNLIEVFSVFIPGSEIPTWFSHQ 357

Query: 222 NEGSSITVTRPSYFYNMNKVVGYAICCVFH---VPKHSIGIKIWRSYATYQLECSMDG-- 276
           +EGSS++V  P +    ++ +GYA+C            +    W S     + C  +G  
Sbjct: 358 SEGSSVSVQTPPHSLENDECLGYAVCASLEYDGCASSELLTDYWVSGVP--ISCFFNGVN 415

Query: 277 -SGTISY----IDFREIFGHCGSDHLWLLYL-SRQRCYDTNWHFESNHFRLSFIDFREKF 330
               +SY    I+ +    +  SDHLW L+  SR + +D        H  L F  +R   
Sbjct: 416 YGSVMSYFHRGIEMQWKRDNIPSDHLWYLFFPSRFKIFD-------RHVSLRFETYR--- 465

Query: 331 GMAGSDPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCFTSYNLNEFHHDFVGSDMA----- 385
                 P +KV +    PVY  +VE            T   ++E   +  GS M      
Sbjct: 466 ------PQIKVIKCGVRPVYHQDVEN----------STFEGVDECFQESGGSTMRGGGAL 509

Query: 386 ---------VAEARGSVCWDDYDEKPQPKRFR 408
                    V EA GSV     DE+P  K+ +
Sbjct: 510 VKRLCYTNDVGEASGSV---SSDEQPPTKKLK 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 137/384 (35%), Positives = 182/384 (47%), Gaps = 93/384 (24%)

Query: 1    MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
            ME L+EL LD T ++ELP SIE L+GLV L LK CK L SLP +I  L  L+ L LSGCS
Sbjct: 812  MESLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCS 871

Query: 61   KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
            +LKK P  + S++ LL+L  +G+ I EVPSSI LL  L++L+L  CK   +    +    
Sbjct: 872  ELKKLPDDMGSLQCLLKLKANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSL 931

Query: 121  RSFQFDGKEFISCS--------------------------------FD------VVFSVS 142
            R+   DG    S +                                 D      +    S
Sbjct: 932  RASPTDGLRLSSLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTS 991

Query: 143  ISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTL---SGALNLRK------- 192
            +S L +L+ L +E CK LQSLP++P ++  + AN C+SL T    S A  LRK       
Sbjct: 992  LSRLPHLRRLIVEHCKNLQSLPELPSSIKELLANDCTSLETFSYPSSAYPLRKFGDFNFE 1051

Query: 193  -----------------------------------SEYTAVSNPSHKLSIVVPGSEIPKW 217
                                               SE++A    S +   VVPGS IP+W
Sbjct: 1052 FSNCFRLVGNEQSDTVEAILQEIRLVASIQKSMAPSEHSARYGES-RYDAVVPGSRIPEW 1110

Query: 218  FMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGS 277
            F +Q+EG SITV  P   YN N  +G A C VFH PK S+G KI RS A +    S++ S
Sbjct: 1111 FTHQSEGDSITVELPPGCYNTNS-IGLAACAVFH-PKFSMG-KIGRS-AYF----SVNES 1162

Query: 278  GTISYIDFREIFGHCGSDHLWLLY 301
            G  S +D         +DH+W  Y
Sbjct: 1163 GGFS-LDNTTSMHFSKADHIWFGY 1185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 137/384 (35%), Positives = 182/384 (47%), Gaps = 93/384 (24%)

Query: 1    MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
            ME L+EL LD T ++ELP SIE L+GLV L LK CK L SLP +I  L  L+ L LSGCS
Sbjct: 785  MESLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCS 844

Query: 61   KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
            +LKK P  + S++ LL+L  +G+ I EVPSSI LL  L++L+L  CK   +    +    
Sbjct: 845  ELKKLPDDMGSLQCLLKLKANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSL 904

Query: 121  RSFQFDGKEFISCS--------------------------------FD------VVFSVS 142
            R+   DG    S +                                 D      +    S
Sbjct: 905  RASPTDGLRLSSLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTS 964

Query: 143  ISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTL---SGALNLRK------- 192
            +S L +L+ L +E CK LQSLP++P ++  + AN C+SL T    S A  LRK       
Sbjct: 965  LSRLPHLRRLIVEHCKNLQSLPELPSSIKELLANDCTSLETFSYPSSAYPLRKFGDFNFE 1024

Query: 193  -----------------------------------SEYTAVSNPSHKLSIVVPGSEIPKW 217
                                               SE++A    S +   VVPGS IP+W
Sbjct: 1025 FSNCFRLVGNEQSDTVEAILQEIRLVASIQKSMAPSEHSARYGES-RYDAVVPGSRIPEW 1083

Query: 218  FMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGS 277
            F +Q+EG SITV  P   YN N  +G A C VFH PK S+G KI RS A +    S++ S
Sbjct: 1084 FTHQSEGDSITVELPPGCYNTNS-IGLAACAVFH-PKFSMG-KIGRS-AYF----SVNES 1135

Query: 278  GTISYIDFREIFGHCGSDHLWLLY 301
            G  S +D         +DH+W  Y
Sbjct: 1136 GGFS-LDNTTSMHFSKADHIWFGY 1158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495285|ref|XP_002276740.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 139/435 (31%), Positives = 199/435 (45%), Gaps = 119/435 (27%)

Query: 1    MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
            ME L EL L  T I+ELP SI  L+GLV L LK CKNL SLP +I  LK L NL LSGCS
Sbjct: 936  MENLLELYLASTAIEELPSSIGHLTGLVLLDLKWCKNLKSLPTSICKLKSLENLSLSGCS 995

Query: 61   KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWT--------- 111
            +L+ FP++  +M++L EL LDGT I  +PSSIE L GL LLNL  CKNL +         
Sbjct: 996  QLESFPEVTENMDNLKELLLDGTPIEVLPSSIERLKGLVLLNLRKCKNLLSLSNGISNGI 1055

Query: 112  ------------------------------TIIYIMAFARSFQFDGKEFISCSFDVVFSV 141
                                            I  +   +        F+S         
Sbjct: 1056 GLRLPSSFSSFRSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRNNFLS------IPA 1109

Query: 142  SISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLV-------TLSGA------- 187
             IS L NLK+L L  C+ L  +P++PP++  + A+ C+SL+       TL G        
Sbjct: 1110 GISELTNLKDLRLAQCQSLTGIPELPPSVRDIDAHNCTSLLPGSSSVSTLQGLQFLFYNC 1169

Query: 188  -----------------------LNLRKSEYTAVSNP--------SHKLSIVVPGSEIPK 216
                                   ++   S+ +  ++P        +   SIV PG+ IP+
Sbjct: 1170 SKPVEDQSSDDKRTELQIFPHIYVSSTASDSSVTTSPVMMQKLLENIAFSIVFPGTGIPE 1229

Query: 217  WFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVF-HVPKHSIGIKIWRSYATYQLECSMD 275
            W  +QN GSSI +  P+ +Y+ +  +G+A+C V  H+P+  I              C ++
Sbjct: 1230 WIWHQNVGSSIKIQLPTNWYS-DDFLGFALCSVLEHLPERII--------------CHLN 1274

Query: 276  GSGTISYIDFREIFGH--------CGSDHLWLLY--LSRQRCYDTNWHFESNHFRLSFID 325
             S   +Y D ++ FGH         GS+H+WL Y   S+ R +  N   E NH  +SF +
Sbjct: 1275 -SDVFNYGDLKD-FGHDFHWTGNIVGSEHVWLGYQPCSQLRLFQFNDPNEWNHIEISF-E 1331

Query: 326  FREKFGMAGSDPVLK 340
               +F  + S+ V K
Sbjct: 1332 AAHRFNSSASNVVKK 1346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116210|ref|XP_002331988.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832112|gb|EEE70589.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 176/388 (45%), Gaps = 84/388 (21%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
           M CL  L LDGT I EL  SI  L GL  LS+  CKNL S+P +I  LK L+ L LS CS
Sbjct: 479 MNCLMVLRLDGTGIAELSSSIRHLIGLGLLSMTNCKNLESIPSSIGCLKSLKKLDLSCCS 538

Query: 61  KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
            LK  P+ +  +E L E  + GTSI ++P+S+ LL  L++L+L+ CK     I+ + + +
Sbjct: 539 ALKNIPENLGKVESLEEFDVSGTSIRQLPASVFLLKNLKVLSLDGCKR----IVVLPSLS 594

Query: 121 RSFQFDGKEFISCSFD------------------------VVFSVSISGLLNLKELELED 156
           R    +     +C+                          V    +I+ L  L+ L LED
Sbjct: 595 RLCSLEVLGLRACNLREGELPEDIGYLSSLRSLDLSQNNFVSLPKAINQLSELEMLVLED 654

Query: 157 CKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNL---RKSEY------------------ 195
           C  L SLP++P  +  V  NGC SL T+   + L   ++SE+                  
Sbjct: 655 CTMLASLPEVPSKVQTVNLNGCRSLKTIPDPIKLSSSKRSEFLCLNCWELYNHNGQESMG 714

Query: 196 --------TAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAIC 247
                      SNP     I VPG+EIP WF ++++GSSI+V  PS        +G+  C
Sbjct: 715 LTMLERYLQGFSNPRPGFGIAVPGNEIPGWFNHRSKGSSISVQVPS------GRMGFFAC 768

Query: 248 CVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISY-----IDFREIFGHCGSDHLWLLYL 302
             F+    S             L C    +G  +Y     I+F    GH  SDH+WL YL
Sbjct: 769 VAFNANDES-----------PSLFCHFKANGRENYPSPMCINFE---GHLFSDHIWLFYL 814

Query: 303 SRQRCYD-TNWHFES-NHFRLSFIDFRE 328
           S     +   W  ES ++  LSF  + +
Sbjct: 815 SFDYLKELQEWQHESFSNIELSFHSYEQ 842

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081002|emb|CBI18506.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 196/447 (43%), Gaps = 115/447 (25%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
           ME L++LLLDGT +K+L  SIE L+GLV L+L+ CKNL +LP +I +LK L  L +SGCS
Sbjct: 203 MEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGCS 262

Query: 61  KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
           KL++ P+ + S++ L++L  DGT + + PSSI LL  LE+LN                  
Sbjct: 263 KLQQLPENLGSLQCLVKLQADGTLVRQPPSSIVLLRNLEILN------------------ 304

Query: 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSS 180
                    F S          IS L  L+ L L  CK L  +P++P ++  V A  CSS
Sbjct: 305 --------NFFS------LPAGISKLSKLRFLSLNHCKSLLQIPELPSSIIEVNAQYCSS 350

Query: 181 L--------------------VTLSGALNLRK----SEYTAVSNPSHKL--------SIV 208
           L                     TL    NL      S   A+ +P  ++        SI 
Sbjct: 351 LNTILTPSSVCNNQPVCRWLVFTLPNCFNLDAENPCSNDMAIISPRMQINFLPDFGFSIF 410

Query: 209 VPGSEIPKWFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATY 268
           +PGSEIP W   QN GS +T+  P +++  N  +G+A+CCVF          I  +  + 
Sbjct: 411 LPGSEIPDWISNQNLGSEVTIELPPHWFESN-FLGFAVCCVFAFE------DIAPNGCSS 463

Query: 269 QLECSMDGSGTISYIDFREIFGHC--------------GSDHLWLLYLSRQRCYDTNWHF 314
           QL C +    +     FR I GH                S H+WL Y  R R        
Sbjct: 464 QLLCQLQSDES----HFRGI-GHILHSIDCEGNSEDRLKSHHMWLAYKPRGR-------- 510

Query: 315 ESNHFRLSFID-------FREKFGMAGSDPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCF 367
                R+S+ D        +  FG     P   V++   H +Y  + EE + T    +  
Sbjct: 511 ----LRISYGDCPNRWRHAKASFGFISCCPSNMVRKCGIHLIYAQDHEERNSTMIHHSSS 566

Query: 368 TSYNLNEFHHDFVGSDMAVAEARGSVC 394
            +++      D   +D +V  +   +C
Sbjct: 567 GNFS------DLKSADSSVGASGSGLC 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 211/499 (42%), Gaps = 135/499 (27%)

Query: 1    MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
            ME L++LLLDGT +K+L  SIE L+GLV L+L+ CKNL +LP +I +LK L  L +SGCS
Sbjct: 726  MEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGCS 785

Query: 61   KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNL----WTTIIYI 116
            KL++ P+ + S++ L++L  DGT + + PSSI LL  LE+L+   CK L    W+++   
Sbjct: 786  KLQQLPENLGSLQCLVKLQADGTLVRQPPSSIVLLRNLEILSFGGCKGLASNSWSSLFSF 845

Query: 117  MAFAR--------------------------------SFQFD-----GKEFISCSFDVVF 139
                R                                +  FD       E ++ S +  F
Sbjct: 846  WLLPRKSSDTIGLQLPSLSGLCSLRELDISDCNLMEGAVPFDICNLSSLETLNLSRNNFF 905

Query: 140  SV--SISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTL------------- 184
            S+   IS L  L+ L L  CK L  +P++P ++  V A  CSSL T+             
Sbjct: 906  SLPAGISKLSKLRFLSLNHCKSLLQIPELPSSIIEVNAQYCSSLNTILTPSSVCNNQPVC 965

Query: 185  -------------------SGALNLRKSEYTAVSN---------PSHKLSIVVPGSEIPK 216
                               S  + +       V+N         P    SI +PGSEIP 
Sbjct: 966  RWLVFTLPNCFNLDAENPCSNDMAIISPRMQIVTNMLQKLQNFLPDFGFSIFLPGSEIPD 1025

Query: 217  WFMYQNEGSSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDG 276
            W   QN GS +T+  P +++  N  +G+A+CCVF          I  +  + QL C +  
Sbjct: 1026 WISNQNLGSEVTIELPPHWFESN-FLGFAVCCVFAFE------DIAPNGCSSQLLCQLQS 1078

Query: 277  SGTISYIDFREIFGHC--------------GSDHLWLLYLSRQRCYDTNWHFESNHFRLS 322
              +     FR I GH                S H+WL Y  R R             R+S
Sbjct: 1079 DES----HFRGI-GHILHSIDCEGNSEDRLKSHHMWLAYKPRGR------------LRIS 1121

Query: 323  FID-------FREKFGMAGSDPVLKVKRFSFHPVYMHEVEEFDQTTKQWTCFTSYNLNEF 375
            + D        +  FG     P   V++   H +Y  + EE + T    +   +++    
Sbjct: 1122 YGDCPNRWRHAKASFGFISCCPSNMVRKCGIHLIYAQDHEERNSTMIHHSSSGNFS---- 1177

Query: 376  HHDFVGSDMAVAEARGSVC 394
              D   +D +V  +   +C
Sbjct: 1178 --DLKSADSSVGASGSGLC 1194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.428	0.139	0.394	7.8e-30
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.440	0.151	0.368	1e-24
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.209	0.071	0.511	1.5e-21
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.632	0.211	0.318	3.1e-20
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.209	0.073	0.511	9e-20
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.209	0.070	0.476	2e-19
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.204	0.069	0.441	6.9e-19
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.214	0.072	0.443	1.7e-17
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.532	0.179	0.307	1.4e-16
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.214	0.075	0.488	1.6e-16

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.8e-30, Sum P(2) = 7.8e-30
 Identities = 73/185 (39%), Positives = 101/185 (54%)

Query:     4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
             L EL LDGT IKELP +I  L  L+ L LK CKNLLSLP +I +LK ++ + LSGCS L+
Sbjct:   754 LEELYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKAIQEIILSGCSSLE 813

Query:    64 KFPQIVASMEDLLELYLDGTSITEVPSSIXXXXXXXXXXXXXXXXX---WTTIIYIMAFA 120
              FP++  +++ L  L LDGT+I ++P  +                    W   IY ++  
Sbjct:   814 SFPEVNQNLKHLKTLLLDGTAIKKIPDILHHLSPDQGLTSSQSNCHLCEWPRGIYGLSSV 873

Query:   121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSS 180
             R       EF       +   SI  L +L  L+L+ CK L S+P +PPNL  + A+GC S
Sbjct:   874 RRLSLSSNEFR------ILPRSIGYLYHLNWLDLKHCKNLVSVPMLPPNLQWLDAHGCIS 927

Query:   181 LVTLS 185
             L T+S
Sbjct:   928 LETIS 932

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
 Identities = 69/187 (36%), Positives = 102/187 (54%)

Query:     2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
             ECL  L L GT IK +P SIE L  L+ L LK C+ L+SLP  + +L+ L+ L LSGCSK
Sbjct:   771 ECLEALYLQGTAIKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELILSGCSK 830

Query:    62 LKKFPQIVASMEDLLELYLDGTSITEVPSSIXXXXXXXXXXXXXXXXXWTTIIYIMAFAR 121
             LK FP++  +M+ +  L LDGT+I ++P  +                   +  Y+ +   
Sbjct:   831 LKFFPELKETMKSIKILLLDGTAIKQMPILLQCIQSQGHSVANKTLPNSLSDYYLPSSLL 890

Query:   122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSL 181
             S    G +  S         +IS L +LK L+L++CK+L+S+  +PPNL  + A+GC SL
Sbjct:   891 SLCLSGNDIES------LHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKCLDAHGCDSL 944

Query:   182 VTLSGAL 188
               +   L
Sbjct:   945 EEVGSPL 951

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
 Identities = 44/86 (51%), Positives = 54/86 (62%)

Query:     4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
             L  L LDGT IKELP  I  L  LV L++KGCK L  LP ++  LK L  L LSGCSKL 
Sbjct:   752 LEALYLDGTAIKELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLN 811

Query:    64 KFPQIVASMEDLLELYLDGTSITEVP 89
             +FP+   +M  L  L LD T+I ++P
Sbjct:   812 EFPETWGNMSRLEILLLDETAIKDMP 837

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 93/292 (31%), Positives = 140/292 (47%)

Query:     2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
             E L  L L+GT+I  LP +I  L  L+ L+LK CKNL +LP  +  LK L+ LKLS CSK
Sbjct:   748 EHLESLYLNGTEINGLPPAIGNLHRLIFLNLKDCKNLATLPDCLGELKSLQELKLSRCSK 807

Query:    62 LKKFPQIVASMEDLLELYLDGTSITEVPSSIXXXXXXXXXXXXXXXXXWTTIIYIMAFAR 121
             LK FP + A ME LL L LDGTSI E+P SI                   T+ + M    
Sbjct:   808 LKIFPDVTAKMESLLVLLLDGTSIAELPCSIFHLSSLRRLCLSRNDNI-RTLRFDMG--H 864

Query:   122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSL--PQ-IPPNLWLVRAN-- 176
              F     E   C    + S+ I    NL+ L    C  L+++  PQ +P     + +   
Sbjct:   865 MFHLKWLELKYCKN--LTSLPILPP-NLQCLNAHGCTSLRTVASPQTLPTPTEQIHSTFI 921

Query:   177 --GCSSL--VTLSGALNL--RKSEYTAVSNPS----HK--LSIVVPGSEIPKWFMYQNEG 224
                C  L  V+ +  ++   +KS+  +    S    +K  +    PG EIP WF +Q  G
Sbjct:   922 FTNCHELEQVSKNAIISYVQKKSKLMSADRYSPDFVYKSLIGTCFPGCEIPAWFNHQALG 981

Query:   225 SSITVTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSY-ATYQLECSMD 275
             S + +  P   +N ++++G A+C V       +  K +R   ++ Q++C+ +
Sbjct:   982 SVLILELPQA-WNSSRIIGIALCVV-------VSFKEYRDQNSSLQVQCTCE 1025

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 9.0e-20, Sum P(3) = 9.0e-20
 Identities = 45/88 (51%), Positives = 58/88 (65%)

Query:     2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
             E L+ L LDGT I +LP ++  L  LV L++K CK L ++P  +S LK L+ L LSGCSK
Sbjct:   726 ENLKALYLDGTSISQLPDNVGNLKRLVLLNMKDCKVLETIPTCVSELKTLQKLVLSGCSK 785

Query:    62 LKKFPQIVASMEDLLELYLDGTSITEVP 89
             LK+FP+I  S   L  L LDGTSI  +P
Sbjct:   786 LKEFPEINKS--SLKILLLDGTSIKTMP 811

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
 Identities = 41/86 (47%), Positives = 53/86 (61%)

Query:     4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
             L  L LDGT IKELP++  +L  LV L++KGC  L   P  +  LK L+ L LS C KL+
Sbjct:   722 LETLYLDGTSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLDDLKALKELILSDCWKLQ 781

Query:    64 KFPQIVASMEDLLELYLDGTSITEVP 89
              FP I   ++ L  L LD T+ITE+P
Sbjct:   782 NFPAICERIKVLEILRLDTTTITEIP 807

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 6.9e-19, Sum P(3) = 6.9e-19
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query:     4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
             +  L LDGT I +LP+++E L  LV L++K CK L  +P  +  LK L+ L LS C  LK
Sbjct:   752 IETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLK 811

Query:    64 KFPQIVASMEDLLELYLDGTSITEVP 89
              FP+I  S  ++L   LDGT+I  +P
Sbjct:   812 IFPEIDISFLNIL--LLDGTAIEVMP 835

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
 Identities = 39/88 (44%), Positives = 51/88 (57%)

Query:     2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
             E +  L L+GT I+ +   IE L  L+ L+LK C+ L  LP  +  LK L+ L LSGCS 
Sbjct:   724 ESIESLHLEGTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLYKLKSLQELVLSGCSA 783

Query:    62 LKKFPQIVASMEDLLELYLDGTSITEVP 89
             L+  P I   ME L  L +DGTSI + P
Sbjct:   784 LESLPPIKEKMECLEILLMDGTSIKQTP 811

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 70/228 (30%), Positives = 101/228 (44%)

Query:     2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
             E +  LLLDGT IK LP SI+    L  L+LK CK L  L   +  LKCL+ L LSGCS+
Sbjct:   734 ENVEVLLLDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCSQ 793

Query:    62 LKKFPQIVASMEDLLELYLDGTSITEVPSSIXXXXXXXXXXXXXXXXXWTTIIYIMAFAR 121
             L+ FP+I   ME L  L +D TSITE+P  +                   ++ ++     
Sbjct:   794 LEVFPEIKEDMESLEILLMDDTSITEMPKMMHLSNIKTFSLCGTSSHVSVSMFFMPPTLG 853

Query:   122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL----W--LVRA 175
               +        CS       +I GL +L+ L L     +++LP+    L    W  L   
Sbjct:   854 CSRLTDLYLSRCSL-YKLPDNIGGLSSLQSLCLSG-NNIENLPESFNQLNNLKWFDLKFC 911

Query:   176 NGCSSLVTLSGALN-LRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQN 222
                 SL  L   L  L   E  ++   ++ L+ +  G  I   F++ N
Sbjct:   912 KMLKSLPVLPQNLQYLDAHECESLETLANPLTPLTVGERIHSMFIFSN 959

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
 Identities = 43/88 (48%), Positives = 54/88 (61%)

Query:     2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
             E L EL LDGT IK LP +   L+ LV L+++GC  L SLP  +   K L+ L LSGCSK
Sbjct:   791 ENLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQKALQELVLSGCSK 850

Query:    62 LKKFPQIVASMEDLLELYLDGTSITEVP 89
             L+  P  V  M+ L  L LDGT I ++P
Sbjct:   851 LESVPTDVKDMKHLRLLLLDGTRIRKIP 878

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	411
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-17
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-17
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 42/221 (19%)

Query: 16  ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDL 75
           ELP SI+ L  L  L ++ C NL +LP  I+ L+ L +L LSGCS+L+ FP I  ++ DL
Sbjct: 793 ELPSSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDL 851

Query: 76  LELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSF 135
               L  T I EVP  IE    L  L++N C NL                          
Sbjct: 852 ---NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL-------------------------- 882

Query: 136 DVVFSVSISGLLNLKELELEDCKRLQ--SLPQIPPNLWLVRANGCSSL-----VTLSGAL 188
               S++IS L +L+ ++  DC  L   S    P  + +   N  S L     +      
Sbjct: 883 -QRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCF 941

Query: 189 NLRKSEYTAV-SNPSHKLSIVVPGSEIPKWFMYQNEGSSIT 228
           NL   +  A+    S    +++ G E+P +F ++  G+S+T
Sbjct: 942 NL---DQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLT 979

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 83.0 bits (205), Expect = 6e-17
 Identities = 68/195 (34%), Positives = 94/195 (48%), Gaps = 28/195 (14%)

Query: 4   LRELLL-DGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L  L L D + + ELP SI+ L+ L  L +  C+NL  LP  I +LK L  L LSGCS+L
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL 717

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK----NLW------TT 112
           K FP I  ++     L LD T+I E PS+   L    L  L  C+     LW      T 
Sbjct: 718 KSFPDISTNIS---WLDLDETAIEEFPSN---LRLENLDELILCEMKSEKLWERVQPLTP 771

Query: 113 IIYIM--AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQ--IPP 168
           ++ ++  +  R F  D          V    SI  L  L+ LE+E+C  L++LP      
Sbjct: 772 LMTMLSPSLTRLFLSDIPSL------VELPSSIQNLHKLEHLEIENCINLETLPTGINLE 825

Query: 169 NLWLVRANGCSSLVT 183
           +L  +  +GCS L T
Sbjct: 826 SLESLDLSGCSRLRT 840

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 4   LRELLLDGTDIKELPVSIELL-SGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L  L LD  +I ++P  I LL S L +L L     + SLP  + +L  L+NL LS    L
Sbjct: 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDL-SDNKIESLPSPLRNLPNLKNLDLSFN-DL 175

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARS 122
              P++++++ +L  L L G  I+++P  IELL  LE L+L+N  N    ++  ++  ++
Sbjct: 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN--NSIIELLSSLSNLKN 233

Query: 123 FQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPP 168
                   +S +       SI  L NL+ L+L    ++ S+  +  
Sbjct: 234 LSGLE---LSNNKLEDLPESIGNLSNLETLDL-SNNQISSISSLGS 275

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 19/132 (14%)

Query: 6   ELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKF 65
           +L L  T I+E+P  IE  S L  L + GC NL  + + IS LK L  +  S C      
Sbjct: 850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC------ 903

Query: 66  PQIVASMEDLLELYLDGTSITEVPSSIELLHGL----ELLNLNNCKNL-WTTIIYIMAFA 120
                    L E   +G+  +EV  + + +H        +N  NC NL    ++   +  
Sbjct: 904 -------GALTEASWNGSP-SEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIF 955

Query: 121 RSFQFDGKEFIS 132
           +     G+E  S
Sbjct: 956 KQLILSGEEVPS 967

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 3   CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
            L  L L G  I +LP  IELLS L +L L    +++ L  ++S+LK L  L+LS  +KL
Sbjct: 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELS-NNKL 244

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105
           +  P+ + ++ +L  L L    I+ + SS+  L  L  L+L+ 
Sbjct: 245 EDLPESIGNLSNLETLDLSNNQISSI-SSLGSLTNLRELDLSG 286

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 53/172 (30%)

Query: 2   ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
           E L +L + G+ +++L   +  L+GL  + L+G KNL  +P  +S    L  LKLS CS 
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS- 668

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFAR 121
                                 S+ E+PSSI+ L+ LE L+++ C+NL      I     
Sbjct: 669 ----------------------SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI----- 701

Query: 122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL-WL 172
                                   L +L  L L  C RL+S P I  N+ WL
Sbjct: 702 -----------------------NLKSLYRLNLSGCSRLKSFPDISTNISWL 730

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	411
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.68
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.35
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.32
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.3
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.28
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.21
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.2
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.2
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.19
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
PRK15386	426	type III secretion protein GogB; Provisional	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
PLN03150	623	hypothetical protein; Provisional	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.77
PLN03150	623	hypothetical protein; Provisional	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.72
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.53
PRK15386	426	type III secretion protein GogB; Provisional	98.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.19
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.12
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.56
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.45
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.16
KOG4341	483	consensus F-box protein containing LRR [General fu	97.14
KOG4341	483	consensus F-box protein containing LRR [General fu	97.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.01
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.93
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.3
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.16
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.89
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.87
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.68
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.72
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.57
smart00370	26	LRR Leucine-rich repeats, outliers.	89.57
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.43
smart00370	26	LRR Leucine-rich repeats, outliers.	89.43
KOG4308	478	consensus LRR-containing protein [Function unknown	88.34
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.42

>PLN03210 Resistant to P

Probab=100.00  E-value=3.8e-32  Score=303.56  Aligned_cols=325  Identities=26%  Similarity=0.325  Sum_probs=214.3

Q ss_pred             CceeEEEEeCC-CCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccC---------
Q 045186            2 ECLRELLLDGT-DIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVAS---------   71 (411)
Q Consensus         2 ~~L~~L~L~~~-~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~---------   71 (411)
                      ++|+.|+|++| .+..+|.+++++++|+.|++++|+.++.+|..+ ++++|+.|++++|+.++.+|....+         
T Consensus       657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n  735 (1153)
T PLN03210        657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET  735 (1153)
T ss_pred             CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence            56777777775 455777777777777777777777777777655 6777777777777665555432110         


Q ss_pred             -----------------------------------------CCCCcEEEccCCC-CCccChhhhccCCCCEEecCCCCCC
Q 045186           72 -----------------------------------------MEDLLELYLDGTS-ITEVPSSIELLHGLELLNLNNCKNL  109 (411)
Q Consensus        72 -----------------------------------------l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~  109 (411)
                                                               .++|+.|+|++|. +.++|.+++++++|+.|++++|..+
T Consensus       736 ~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L  815 (1153)
T PLN03210        736 AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL  815 (1153)
T ss_pred             ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence                                                     1234455555543 3357777778888888888877532


Q ss_pred             hh--HH--------------------HhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCCC
Q 045186          110 WT--TI--------------------IYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIP  167 (411)
Q Consensus       110 ~~--~~--------------------l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~  167 (411)
                      ..  ..                    ....++|+.|+|++|.++.      +|.++..+++|+.|+|++|++++.+|...
T Consensus       816 ~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~------iP~si~~l~~L~~L~L~~C~~L~~l~~~~  889 (1153)
T PLN03210        816 ETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE------VPWWIEKFSNLSFLDMNGCNNLQRVSLNI  889 (1153)
T ss_pred             CeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCcc------ChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence            11  10                    0112456667777777777      99999999999999999999999988754


Q ss_pred             ---CCCceEEecCCCCCCcccCCc-------------------------Ccc----hhhhcccCCCCCceEEEccCCCCC
Q 045186          168 ---PNLWLVRANGCSSLVTLSGAL-------------------------NLR----KSEYTAVSNPSHKLSIVVPGSEIP  215 (411)
Q Consensus       168 ---~~L~~L~~~~c~~L~~l~~~~-------------------------nl~----~~~~~~~~~~~~~~~~~~pg~~iP  215 (411)
                         ++|+.+++.+|.+|+.++...                         |+.    ...++   .......+.+||.++|
T Consensus       890 ~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~---~~~~~~~~~l~g~evp  966 (1153)
T PLN03210        890 SKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQ---QQSIFKQLILSGEEVP  966 (1153)
T ss_pred             ccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhc---ccccceEEECCCccCc
Confidence               577888999999998765421                         110    00000   0112235789999999


Q ss_pred             cccccCCCCceEE-EEcCCCCCCCCceeeEEeEEEEecCCCCccccccccCceeeeEEEEeeCCCeeeeeeeeeecccCC
Q 045186          216 KWFMYQNEGSSIT-VTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGS  294 (411)
Q Consensus       216 ~Wf~~~~~~~sl~-~~lp~~~~~~~~~~g~~~c~v~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~s  294 (411)
                      +||.|++.|++++ |.+|+.|. ...|.||++|+|+++.+....    ....++.+.|++.+..+..+.       ....
T Consensus       967 ~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~~~----~~~~~~~~~c~~~~~~~~~~~-------~~~~ 1034 (1153)
T PLN03210        967 SYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSESFFII----SVSFDIQVCCRFIDRLGNHFD-------SPYQ 1034 (1153)
T ss_pred             hhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCccccC----CCceeEEEEEEEECCCCCccc-------cCCC
Confidence            9999999999998 99999998 788999999999986653211    123456778888776544331       1234


Q ss_pred             CeEEEEEEecccc-------c---cc--CCCCCcceEEEEEEeccccccccCCCCCcEEEEeeeEEEecCCcc
Q 045186          295 DHLWLLYLSRQRC-------Y---DT--NWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEVE  355 (411)
Q Consensus       295 dhl~l~~~~~~~~-------~---~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Vk~cGv~liy~~~~~  355 (411)
                      +|+|+.|.....+       .   +.  .....++|+++.|.+..      . ...++||+||||++|+.+..
T Consensus      1035 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~------~-~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210       1035 PHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTN------K-NSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred             ceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEec------C-CCCeEEEeeeEEEeccCCCc
Confidence            5555554442111       0   10  11234778888887651      1 12369999999999976644

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=1.5e-17  Score=184.66  Aligned_cols=174  Identities=22%  Similarity=0.254  Sum_probs=126.6

Q ss_pred             CceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            2 ECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         2 ~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      ++|++|+|++|.+. .+|..++++++|++|+|++|...+.+|..+.++++|++|+|++|...+.+|..++++++|+.|+|
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            46666777766665 56667777888888888877666677777777888888888887766777777778888888888


Q ss_pred             cCCCCC-ccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186           81 DGTSIT-EVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC  157 (411)
Q Consensus        81 ~~~~i~-~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c  157 (411)
                      ++|.+. .+|..++++++|+.|++++|.  +..+..++.+++|+.|++++|.+.+     .+|..+..+++|+.|++++|
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-----PIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec-----cCchhHhhccCcCEEECcCC
Confidence            888777 677778888888888888776  3445567777888888888877764     36777777788888888877


Q ss_pred             ccccccCCC---CCCCceEEecCCCC
Q 045186          158 KRLQSLPQI---PPNLWLVRANGCSS  180 (411)
Q Consensus       158 ~~l~~lp~l---~~~L~~L~~~~c~~  180 (411)
                      .....+|..   .++|+.|++.+|.-
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCcc
Confidence            655555542   25677777766543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.71  E-value=4.6e-17  Score=180.73  Aligned_cols=180  Identities=21%  Similarity=0.224  Sum_probs=154.1

Q ss_pred             CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      +++|++|+|++|.+. .+|.+++++++|++|+|++|...+.+|..+.++++|++|+|++|...+.+|..++++++|++|+
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            478999999999987 7888899999999999999887778999999999999999999887788999999999999999


Q ss_pred             ccCCCCC-ccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186           80 LDGTSIT-EVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED  156 (411)
Q Consensus        80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~  156 (411)
                      +++|.+. .+|..++.+++|+.|++++|.  ...+..+..+++|+.|++++|.+.+     .+|..+..+++|+.|++++
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-----EIPELVIQLQNLEILHLFS  317 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc-----CCChhHcCCCCCcEEECCC
Confidence            9999988 789999999999999999987  3455668889999999999998875     3778888999999999999


Q ss_pred             cccccccCCC---CCCCceEEecCCCCCCccc
Q 045186          157 CKRLQSLPQI---PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       157 c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~  185 (411)
                      |.....+|..   .++|+.|++.+|.-...++
T Consensus       318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence            8766666543   2678888888775443443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=3.7e-19  Score=151.70  Aligned_cols=167  Identities=24%  Similarity=0.348  Sum_probs=148.0

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      |.+++.|.|+.|.++.+|+.|+.+.+|++|++.+ +.++++|.+++.+++|+.|+++- +.+..+|.++|.++.|+.|||
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence            4577889999999999999999999999999998 68999999999999999999987 788999999999999999999


Q ss_pred             cCCCCC--ccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186           81 DGTSIT--EVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC  157 (411)
Q Consensus        81 ~~~~i~--~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c  157 (411)
                      .+|.+.  .+|..+..++.|+-|.+++|. ...+..++.+++|+.|.+..|.+.+      +|..++.++.|+.|.+++|
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~------lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS------LPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh------CcHHHHHHHHHHHHhcccc
Confidence            999987  799999999999999999998 5566779999999999999999999      9999999999999999996


Q ss_pred             ccccccCCCCCCCceEEecCCC
Q 045186          158 KRLQSLPQIPPNLWLVRANGCS  179 (411)
Q Consensus       158 ~~l~~lp~l~~~L~~L~~~~c~  179 (411)
                      + ++-+   |+.|-.|++-+-+
T Consensus       184 r-l~vl---ppel~~l~l~~~k  201 (264)
T KOG0617|consen  184 R-LTVL---PPELANLDLVGNK  201 (264)
T ss_pred             e-eeec---ChhhhhhhhhhhH
Confidence            5 4444   4455555554443

>PLN03210 Resistant to P

Probab=99.68  E-value=3.8e-16  Score=175.32  Aligned_cols=178  Identities=29%  Similarity=0.464  Sum_probs=130.6

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      .+|++|+|.++.+..+|..+..+++|+.|+|++|..++.+|. +..+++|++|+|++|..+..+|..++++++|+.|+++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            467777777777777777777888888888888777777775 7778888888888888888888888888888888888


Q ss_pred             CC-CCCccChhhhccCCCCEEecCCCCCChh--H----------------------------------------------
Q 045186           82 GT-SITEVPSSIELLHGLELLNLNNCKNLWT--T----------------------------------------------  112 (411)
Q Consensus        82 ~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~--~----------------------------------------------  112 (411)
                      +| .++.+|..+ ++++|+.|++++|..+..  .                                              
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence            76 566777665 677777777777752210  0                                              


Q ss_pred             ----HHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCC--CCCCceEEecCCCCCCcccC
Q 045186          113 ----IIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI--PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       113 ----~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~~L~~l~~  186 (411)
                          ....+++|+.|+|++|....     .+|.+++++++|+.|+|++|+.++.+|..  +++|+.|++++|..|+.++.
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~-----~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLV-----ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCcc-----ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence                00112356666666653222     37888888899999999999888888864  47888999999988887764

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=2.4e-16  Score=157.14  Aligned_cols=177  Identities=25%  Similarity=0.342  Sum_probs=134.7

Q ss_pred             CCceeEEEEeCCCC--CcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            1 MECLRELLLDGTDI--KELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~~~l--~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      |+.|++|.+++++-  ..+|.++..+.+|..+||+. +.+..+|..+.++.+|+.|+||+ +.++.+....+.+.+|++|
T Consensus       196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtL  273 (1255)
T KOG0444|consen  196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETL  273 (1255)
T ss_pred             chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhh
Confidence            34566777777543  36788888888888888886 57888888888888999999988 5677777677777888888


Q ss_pred             EccCCCCCccChhhhccCCCCEEecCCCC---CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186           79 YLDGTSITEVPSSIELLHGLELLNLNNCK---NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE  155 (411)
Q Consensus        79 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~  155 (411)
                      +|+.|.++.+|+.+.++++|+.|.+.+|+   ...++.|+.+..|+.+..++|.+.-      +|.++..|.+|+.|.|+
T Consensus       274 NlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl------VPEglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  274 NLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL------VPEGLCRCVKLQKLKLD  347 (1255)
T ss_pred             ccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc------CchhhhhhHHHHHhccc
Confidence            88888888888888888888888888777   3345557888888888888888777      88888888888888887


Q ss_pred             CcccccccCC---CCCCCceEEecCCCCCCcccC
Q 045186          156 DCKRLQSLPQ---IPPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       156 ~c~~l~~lp~---l~~~L~~L~~~~c~~L~~l~~  186 (411)
                      +| .+..+|+   +.+.|+.|++...++|..=|.
T Consensus       348 ~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  348 HN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             cc-ceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            64 4555665   346777888887777765444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=9.8e-16  Score=130.85  Aligned_cols=139  Identities=25%  Similarity=0.330  Sum_probs=125.5

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCC-cccchhccCCCCCcEEE
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL-KKFPQIVASMEDLLELY   79 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~   79 (411)
                      +.+|+.|++.+|+|+++|.+++.+++|+.|++.- +.+..+|..++.++.|+.|||+.|+.- ..+|..+--|..|+.|+
T Consensus        55 l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            4689999999999999999999999999999997 578889999999999999999997643 47888888899999999


Q ss_pred             ccCCCCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccchhhhcC
Q 045186           80 LDGTSITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGL  146 (411)
Q Consensus        80 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l  146 (411)
                      |+.|.++-+|..++++++|+.|.+.+|.-+ .+..++.++.|++|.+.||.++-      +|..++++
T Consensus       134 l~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v------lppel~~l  195 (264)
T KOG0617|consen  134 LGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV------LPPELANL  195 (264)
T ss_pred             hcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee------cChhhhhh
Confidence            999999999999999999999999999843 45569999999999999999999      99777654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.49  E-value=2e-15  Score=150.71  Aligned_cols=156  Identities=26%  Similarity=0.389  Sum_probs=144.8

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      |.||+.++|+.|++..+|..+-++++|+.|+|++ +.++.+...++...+|++|++|. +.++.+|..+.+++.|+.|.+
T Consensus       221 l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYA  298 (1255)
T ss_pred             hhhhhhccccccCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHh
Confidence            4689999999999999999999999999999999 57888877777889999999999 679999999999999999999


Q ss_pred             cCCCCC--ccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186           81 DGTSIT--EVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC  157 (411)
Q Consensus        81 ~~~~i~--~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c  157 (411)
                      .+|.++  .+|+.||++.+|+.+..++|. .+.+..++.+..|+.|.|+.|.+.+      +|..|.-|+.|+.||+..|
T Consensus       299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT------LPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT------LPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             ccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee------chhhhhhcCCcceeeccCC
Confidence            999877  999999999999999999998 6778889999999999999999999      9999999999999999999


Q ss_pred             ccccccC
Q 045186          158 KRLQSLP  164 (411)
Q Consensus       158 ~~l~~lp  164 (411)
                      +++.--|
T Consensus       373 pnLVMPP  379 (1255)
T KOG0444|consen  373 PNLVMPP  379 (1255)
T ss_pred             cCccCCC
Confidence            9887544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.41  E-value=4.8e-14  Score=140.09  Aligned_cols=171  Identities=24%  Similarity=0.255  Sum_probs=106.2

Q ss_pred             eeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            4 LRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      |+.|.|..|.|..+.+. |-.|.++++|+|..| .+..+ ..++.+|++|+.|+||.|..-.--++...-.++|++|+|+
T Consensus       247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs  325 (873)
T KOG4194|consen  247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS  325 (873)
T ss_pred             hhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence            33344444444433322 445556666666653 33332 3445677777777777744333334555556778888888


Q ss_pred             CCCCCccCh-hhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186           82 GTSITEVPS-SIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus        82 ~~~i~~lp~-~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      .|.|+.+++ ++..|..|+.|+|+.|.  .+....+..+++|++|||+.|.+..|-.++..+  +..+++|+.|++.+| 
T Consensus       326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~--f~gl~~LrkL~l~gN-  402 (873)
T KOG4194|consen  326 SNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA--FNGLPSLRKLRLTGN-  402 (873)
T ss_pred             ccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh--hccchhhhheeecCc-
Confidence            888887765 46667777788887776  333444778888888888888877743333332  556888888888875 


Q ss_pred             cccccCCC----CCCCceEEecCC
Q 045186          159 RLQSLPQI----PPNLWLVRANGC  178 (411)
Q Consensus       159 ~l~~lp~l----~~~L~~L~~~~c  178 (411)
                      ++++||.-    .++|++|++.+.
T Consensus       403 qlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  403 QLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             eeeecchhhhccCcccceecCCCC
Confidence            47777652    266777777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=1.4e-12  Score=138.86  Aligned_cols=119  Identities=18%  Similarity=0.308  Sum_probs=84.1

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++|+.|+|++|.|+.+|..+.  ++|+.|++++| .+..+|..+.  .+|+.|+|++|. +..+|..+.  .+|+.|+++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLF  270 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECc
Confidence            468899999999999987654  58999999985 5778887553  478899998854 667887664  578888998


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCCh-hHHHhhccccceeecCCCCccc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNLW-TTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      +|.++.+|..+.  ++|+.|++++|.-.. +..+  .++|+.|++++|.++.
T Consensus       271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA  318 (754)
T ss_pred             CCccCccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc
Confidence            888888887654  578888888886211 1101  1245555555555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.35  E-value=1.5e-14  Score=138.10  Aligned_cols=147  Identities=27%  Similarity=0.338  Sum_probs=88.8

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      .|+.|+.+.|.++++|++++.+..|..|+..+ +.+.++|..+.++.+|..|++.+ ++++.+|+..-+|+.|++||...
T Consensus       115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~  192 (565)
T KOG0472|consen  115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNS  192 (565)
T ss_pred             hhhhhhccccceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccch
Confidence            45667777777777777777777777777665 45666666666666666666666 34444544444455555555555


Q ss_pred             CCCCccChhhhccCCCCEEecCCCCCCh------------------------hHHHhhccccceeecCCCCccccccccc
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCKNLW------------------------TTIIYIMAFARSFQFDGKEFISCSFDVV  138 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~------------------------~~~l~~l~~L~~L~Ls~n~~~~~~~~~~  138 (411)
                      |-++.+|..++.+.+|..|++..|+...                        ......+++|..|||..|++..      
T Consensus       193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke------  266 (565)
T KOG0472|consen  193 NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE------  266 (565)
T ss_pred             hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc------
Confidence            5555555555555555555555444222                        2224466666666776666666      


Q ss_pred             cchhhhcCCCCCEecccCc
Q 045186          139 FSVSISGLLNLKELELEDC  157 (411)
Q Consensus       139 lp~~l~~l~~L~~L~L~~c  157 (411)
                      +|..+..+.+|.+||+++|
T Consensus       267 ~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  267 VPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             CchHHHHhhhhhhhcccCC
Confidence            6666666666667776664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.32  E-value=1.2e-14  Score=138.78  Aligned_cols=179  Identities=20%  Similarity=0.292  Sum_probs=138.7

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +++.|+.+.|.+.++|..++.+.+|+.|+.+. +.+..+|+.++.+..|+.|+..+ +.+..+|+.++++.+|..|++.+
T Consensus        92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~  169 (565)
T KOG0472|consen   92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG  169 (565)
T ss_pred             HHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc
Confidence            56778999999999999999999999999999 57888999999999999999988 67899999999999999999999


Q ss_pred             CCCCccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccc------c----------ccccccchhhh-
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFIS------C----------SFDVVFSVSIS-  144 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~------~----------~~~~~lp~~l~-  144 (411)
                      |.++++|+..-+++.|++||...|. ...+..++.+.+|+-|+|..|.+..      |          .....+|+.+. 
T Consensus       170 n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~  249 (565)
T KOG0472|consen  170 NKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLK  249 (565)
T ss_pred             cchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhc
Confidence            9999999988889999999988876 4445556666666666666665443      1          01111554443 


Q ss_pred             cCCCCCEecccCcccccccCC---CCCCCceEEecCCCCCCccc
Q 045186          145 GLLNLKELELEDCKRLQSLPQ---IPPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       145 ~l~~L~~L~L~~c~~l~~lp~---l~~~L~~L~~~~c~~L~~l~  185 (411)
                      ++++|..||+.+| +++++|.   +-.+|..|++++. .+..+|
T Consensus       250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN-~is~Lp  291 (565)
T KOG0472|consen  250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN-DISSLP  291 (565)
T ss_pred             ccccceeeecccc-ccccCchHHHHhhhhhhhcccCC-ccccCC
Confidence            6778888888875 4677765   2367788888764 234443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.30  E-value=1.3e-11  Score=131.21  Aligned_cols=152  Identities=22%  Similarity=0.318  Sum_probs=83.6

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +|+.|++.+|+|+.+|..   +++|++|+|++| .++.+|..   .++|+.|+|++| .+..+|...   .+|+.|++++
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~  291 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN-PLTHLPALP---SGLCKLWIFG  291 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccCC-chhhhhhch---hhcCEEECcC
Confidence            577888888888877752   467888888874 66667642   346666666664 344454421   3344445555


Q ss_pred             CCCCccChhhhccCCCCEEecCCCCCCh-hH-------------HHh----hccccceeecCCCCccccccccccchhhh
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCKNLW-TT-------------IIY----IMAFARSFQFDGKEFISCSFDVVFSVSIS  144 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~~-------------~l~----~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~  144 (411)
                      |.++.+|..   +++|+.|++++|.... +.             .+.    ...+|+.|+|++|+++.      +|..  
T Consensus       292 N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~------LP~l--  360 (788)
T PRK15387        292 NQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS------LPTL--  360 (788)
T ss_pred             Ccccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC------CCCC--
Confidence            544444431   2344444444443100 00             011    11367778888877777      6642  


Q ss_pred             cCCCCCEecccCcccccccCCCCCCCceEEecCC
Q 045186          145 GLLNLKELELEDCKRLQSLPQIPPNLWLVRANGC  178 (411)
Q Consensus       145 ~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c  178 (411)
                       ..+|+.|++++| .+..+|.++.+|+.|+++++
T Consensus       361 -p~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N  392 (788)
T PRK15387        361 -PSELYKLWAYNN-RLTSLPALPSGLKELIVSGN  392 (788)
T ss_pred             -Ccccceehhhcc-ccccCcccccccceEEecCC
Confidence             234555566553 34555555555666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.28  E-value=9.5e-12  Score=132.57  Aligned_cols=155  Identities=21%  Similarity=0.316  Sum_probs=114.8

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +...|+++++.++.+|..+.  ++|+.|+|++| .+..+|..+.  .+|++|++++| .+..+|..+.  .+|+.|+|++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence            56789999999998887664  57999999985 6778887654  58999999985 5778887653  4799999999


Q ss_pred             CCCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ  161 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~  161 (411)
                      |.+..+|..+.  .+|+.|++++|... .+..+  .++|+.|+|++|+++.      +|..+.  ++|+.|++++|. +.
T Consensus       251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~------LP~~lp--~sL~~L~Ls~N~-Lt  317 (754)
T PRK15370        251 NRITELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT------LPAHLP--SGITHLNVQSNS-LT  317 (754)
T ss_pred             CccCcCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc------Ccccch--hhHHHHHhcCCc-cc
Confidence            99999998764  58999999988622 12112  3589999999999988      775443  456777777653 44


Q ss_pred             ccCC-CCCCCceEEecCC
Q 045186          162 SLPQ-IPPNLWLVRANGC  178 (411)
Q Consensus       162 ~lp~-l~~~L~~L~~~~c  178 (411)
                      .+|. ++++|+.|++.+|
T Consensus       318 ~LP~~l~~sL~~L~Ls~N  335 (754)
T PRK15370        318 ALPETLPPGLKTLEAGEN  335 (754)
T ss_pred             cCCccccccceeccccCC
Confidence            5553 4566666666665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.21  E-value=5.5e-11  Score=126.38  Aligned_cols=156  Identities=23%  Similarity=0.274  Sum_probs=120.1

Q ss_pred             eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186            4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT   83 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (411)
                      -..|+|++++|+.+|..+.  ++|+.|++.+ +.++.+|.   .+++|++|+|++| .++.+|..   .++|+.|++++|
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPD-NNLTSLPA---LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccC-CcCCCCCC---CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence            4579999999999998775  4899999998 57888886   3689999999995 77888864   468999999999


Q ss_pred             CCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccccc
Q 045186           84 SITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSL  163 (411)
Q Consensus        84 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~l  163 (411)
                      .++.+|..   +.+|+.|++++|....-  -..+++|+.|+|++|++..      +|...   .+|+.|++++| .++.+
T Consensus       273 ~L~~Lp~l---p~~L~~L~Ls~N~Lt~L--P~~p~~L~~LdLS~N~L~~------Lp~lp---~~L~~L~Ls~N-~L~~L  337 (788)
T PRK15387        273 PLTHLPAL---PSGLCKLWIFGNQLTSL--PVLPPGLQELSVSDNQLAS------LPALP---SELCKLWAYNN-QLTSL  337 (788)
T ss_pred             chhhhhhc---hhhcCEEECcCCccccc--cccccccceeECCCCcccc------CCCCc---ccccccccccC-ccccc
Confidence            99988863   36788999999973211  1235789999999999998      87532   35667777764 46677


Q ss_pred             CCCCCCCceEEecCCCCCCccc
Q 045186          164 PQIPPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       164 p~l~~~L~~L~~~~c~~L~~l~  185 (411)
                      |.+|.+|+.|+++++ .|+.+|
T Consensus       338 P~lp~~Lq~LdLS~N-~Ls~LP  358 (788)
T PRK15387        338 PTLPSGLQELSVSDN-QLASLP  358 (788)
T ss_pred             cccccccceEecCCC-ccCCCC
Confidence            777777888887764 455554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.20  E-value=2.1e-12  Score=134.60  Aligned_cols=169  Identities=26%  Similarity=0.392  Sum_probs=105.6

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcc-----------------------cccccCCCCCccEEEeeC
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLS-----------------------LPIAISSLKCLRNLKLSG   58 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~-----------------------lp~~i~~l~~L~~L~Ls~   58 (411)
                      .+|++++++.+.++.+|.+++.+.+|+.|+..+| .+..                       +|.....+++|++|+|..
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            3688888888888888888888888888888874 3333                       455555577788888776


Q ss_pred             CCCCcccchh--------------------------------------------------ccCCCCCcEEEccCCCCCcc
Q 045186           59 CSKLKKFPQI--------------------------------------------------VASMEDLLELYLDGTSITEV   88 (411)
Q Consensus        59 c~~l~~lp~~--------------------------------------------------l~~l~~L~~L~L~~~~i~~l   88 (411)
                      | .+..+|+.                                                  +.++++|+.|+|++|.+..+
T Consensus       320 N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  320 N-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             c-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            3 34433321                                                  12334555555555555555


Q ss_pred             Chh-hhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc--cC
Q 045186           89 PSS-IELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS--LP  164 (411)
Q Consensus        89 p~~-i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~--lp  164 (411)
                      |++ +.+++.|+.|+|+||+ ...+..+..+..|++|...+|++..      +| .+.+++.|+.+||+.|. |+.  +|
T Consensus       399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~------fP-e~~~l~qL~~lDlS~N~-L~~~~l~  470 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS------FP-ELAQLPQLKVLDLSCNN-LSEVTLP  470 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee------ch-hhhhcCcceEEecccch-hhhhhhh
Confidence            543 4455555555555555 2223445555555555555555555      66 56677778888887643 433  23


Q ss_pred             C-CC-CCCceEEecCCCC
Q 045186          165 Q-IP-PNLWLVRANGCSS  180 (411)
Q Consensus       165 ~-l~-~~L~~L~~~~c~~  180 (411)
                      . +| ++|++|+++|.+.
T Consensus       471 ~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  471 EALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhCCCcccceeeccCCcc
Confidence            2 46 7888888888764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.20  E-value=3.2e-11  Score=116.75  Aligned_cols=177  Identities=18%  Similarity=0.143  Sum_probs=105.6

Q ss_pred             CceeEEEEeCCCCC-----cccccccCCCCccEEEEecCCCC------cccccccCCCCCccEEEeeCCCCCcccchhcc
Q 045186            2 ECLRELLLDGTDIK-----ELPVSIELLSGLVQLSLKGCKNL------LSLPIAISSLKCLRNLKLSGCSKLKKFPQIVA   70 (411)
Q Consensus         2 ~~L~~L~L~~~~l~-----~lp~si~~l~~L~~L~L~~c~~l------~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~   70 (411)
                      ++|++|+++++.++     .++..+...++|+.|+++++...      ..++..+..+++|+.|++++|......+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            45778888887773     34555666777888887775332      12334455677888888887665544444444


Q ss_pred             CCCC---CcEEEccCCCCCc-----cChhhhcc-CCCCEEecCCCCCCh------hHHHhhccccceeecCCCCcccccc
Q 045186           71 SMED---LLELYLDGTSITE-----VPSSIELL-HGLELLNLNNCKNLW------TTIIYIMAFARSFQFDGKEFISCSF  135 (411)
Q Consensus        71 ~l~~---L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~~~~~~------~~~l~~l~~L~~L~Ls~n~~~~~~~  135 (411)
                      .+..   |+.|++++|.+..     +...+..+ ++|+.|++++|....      ...+..+++|++|++++|.+.. ..
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~  181 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD-AG  181 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch-HH
Confidence            4443   7888888777662     23345555 777888888776331      1225556677788887777663 11


Q ss_pred             ccccchhhhcCCCCCEecccCcccc----cccC---CCCCCCceEEecCCC
Q 045186          136 DVVFSVSISGLLNLKELELEDCKRL----QSLP---QIPPNLWLVRANGCS  179 (411)
Q Consensus       136 ~~~lp~~l~~l~~L~~L~L~~c~~l----~~lp---~l~~~L~~L~~~~c~  179 (411)
                      ...++..+..+++|+.|++++|..-    ..++   .-.++|++|++++|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            1123444555667777887776421    1111   112567777777663

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.20  E-value=1.1e-11  Score=123.64  Aligned_cols=147  Identities=18%  Similarity=0.209  Sum_probs=121.0

Q ss_pred             eeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCccc-chhccCCCCCcEEEcc
Q 045186            4 LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKF-PQIVASMEDLLELYLD   81 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~   81 (411)
                      -+.|++++|.+..+.. .|.++++|+.++|.. +.++.+|.......+|+.|+|.+| .+.++ .+.+.-++.|+.|||+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence            4679999999997754 488999999999998 588999986666677999999995 45444 3567778899999999


Q ss_pred             CCCCCccCh-hhhccCCCCEEecCCCCCC--hhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecccCc
Q 045186           82 GTSITEVPS-SIELLHGLELLNLNNCKNL--WTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELEDC  157 (411)
Q Consensus        82 ~~~i~~lp~-~i~~l~~L~~L~L~~~~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~~c  157 (411)
                      .|.|+++|. ++.+-.+++.|+|++|...  ....+..+.+|..|.|+.|.+++      +|. .+..|++|+.|+|..|
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt------Lp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT------LPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc------cCHHHhhhcchhhhhhcccc
Confidence            999998875 4666689999999999843  34458889999999999999999      984 5667999999999886


Q ss_pred             c
Q 045186          158 K  158 (411)
Q Consensus       158 ~  158 (411)
                      .
T Consensus       232 ~  232 (873)
T KOG4194|consen  232 R  232 (873)
T ss_pred             c
Confidence            4

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.19  E-value=2e-12  Score=134.68  Aligned_cols=111  Identities=24%  Similarity=0.360  Sum_probs=93.5

Q ss_pred             cCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhcccccee
Q 045186           45 ISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF  123 (411)
Q Consensus        45 i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L  123 (411)
                      +.++++|+.|+|++ +.+..+|. .+.++..|++|+|+||.++.+|..+..+..|++|...+|.......+..++.|+.+
T Consensus       379 l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l  457 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL  457 (1081)
T ss_pred             hccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence            55679999999999 67899995 56789999999999999999999999999999999999986555579999999999


Q ss_pred             ecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186          124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ  161 (411)
Q Consensus       124 ~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~  161 (411)
                      |++.|+++.-.    +|.... -++|++||+++|..+.
T Consensus       458 DlS~N~L~~~~----l~~~~p-~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  458 DLSCNNLSEVT----LPEALP-SPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             ecccchhhhhh----hhhhCC-CcccceeeccCCcccc
Confidence            99999988721    332221 2899999999998643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.17  E-value=3.1e-11  Score=116.84  Aligned_cols=137  Identities=20%  Similarity=0.108  Sum_probs=60.3

Q ss_pred             ccCCCCccEEEEecCCCC----cccccccCCCCCccEEEeeCCCCC------cccchhccCCCCCcEEEccCCCCC-ccC
Q 045186           21 IELLSGLVQLSLKGCKNL----LSLPIAISSLKCLRNLKLSGCSKL------KKFPQIVASMEDLLELYLDGTSIT-EVP   89 (411)
Q Consensus        21 i~~l~~L~~L~L~~c~~l----~~lp~~i~~l~~L~~L~Ls~c~~l------~~lp~~l~~l~~L~~L~L~~~~i~-~lp   89 (411)
                      +..+.+|+.|++++|...    ..++..+...++|++|+++++...      ..++..+..+++|+.|++++|.+. ..+
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            344444555555554321    123333444455555555553322      122233444555555555555554 233


Q ss_pred             hhhhccCC---CCEEecCCCCCCh------hHHHhhc-cccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186           90 SSIELLHG---LELLNLNNCKNLW------TTIIYIM-AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus        90 ~~i~~l~~---L~~L~L~~~~~~~------~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      ..+..+..   |+.|++++|....      ...+..+ ++|+.|++++|.++. .....++..+..+.+|+.|++++|.
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG-ASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc-hHHHHHHHHHHhCCCcCEEECcCCC
Confidence            33333333   5555555554221      0113333 555555555555542 0011133334444555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=5.9e-11  Score=118.82  Aligned_cols=168  Identities=29%  Similarity=0.457  Sum_probs=126.6

Q ss_pred             CceeEEEEeCCCCCcccccccCCC-CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLS-GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      ++++.|++.++.++++++....++ +|+.|++++ +.+..+|..+..+++|+.|++++ +.+..+|...+.+++|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheec
Confidence            357788888888888888777774 888888887 56777776678888888888888 467777776667788888888


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKR  159 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~  159 (411)
                      ++|.+..+|..+..+..|+.|.+++|. ......+..+.++..|.+.+|.+..      ++..++.+++|+.|++++|. 
T Consensus       194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------~~~~~~~l~~l~~L~~s~n~-  266 (394)
T COG4886         194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------LPESIGNLSNLETLDLSNNQ-  266 (394)
T ss_pred             cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee------ccchhccccccceecccccc-
Confidence            888888888877777778888888884 4445557778888888888888777      77778888888888888754 


Q ss_pred             ccccCCCC--CCCceEEecCC
Q 045186          160 LQSLPQIP--PNLWLVRANGC  178 (411)
Q Consensus       160 l~~lp~l~--~~L~~L~~~~c  178 (411)
                      +..++.+.  .+++.|++.+.
T Consensus       267 i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         267 ISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccccccccCccCEEeccCc
Confidence            55555433  45666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=2.2e-10  Score=100.99  Aligned_cols=136  Identities=21%  Similarity=0.261  Sum_probs=44.5

Q ss_pred             eCCCCCcccccccCCCCccEEEEecCCCCcccccccC-CCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCcc
Q 045186           10 DGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAIS-SLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEV   88 (411)
Q Consensus        10 ~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l   88 (411)
                      ..+.|.++|. +.+..++++|+|++| .+..+. .++ .+.+|+.|+|++ +.++.++ .+..++.|++|++++|.|+.+
T Consensus         5 t~~~i~~~~~-~~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen    5 TANMIEQIAQ-YNNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS---S-
T ss_pred             cccccccccc-ccccccccccccccc-cccccc-chhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCCCCCcc
Confidence            3344555555 566667888888884 555553 354 477888888888 4566664 466788888888888888887


Q ss_pred             Chhh-hccCCCCEEecCCCCCCh---hHHHhhccccceeecCCCCccccccccccc----hhhhcCCCCCEecccC
Q 045186           89 PSSI-ELLHGLELLNLNNCKNLW---TTIIYIMAFARSFQFDGKEFISCSFDVVFS----VSISGLLNLKELELED  156 (411)
Q Consensus        89 p~~i-~~l~~L~~L~L~~~~~~~---~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp----~~l~~l~~L~~L~L~~  156 (411)
                      ...+ ..+++|+.|++++|....   -..+..+++|+.|+|.+|.+..      -+    ..+..+++|+.||-..
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~------~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE------KKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG------STTHHHHHHHH-TT-SEETTEE
T ss_pred             ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc------hhhHHHHHHHHcChhheeCCEE
Confidence            6655 357888888888776211   1236667777777777777665      33    2345666677666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.7e-10  Score=101.58  Aligned_cols=120  Identities=24%  Similarity=0.370  Sum_probs=52.1

Q ss_pred             ceeEEEEeCCCCCccccccc-CCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhc-cCCCCCcEEEc
Q 045186            3 CLRELLLDGTDIKELPVSIE-LLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIV-ASMEDLLELYL   80 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~L   80 (411)
                      ++++|+|++|.|+.+.. ++ .+.+|+.|+|++| .+..++ .+..++.|++|++++ +.++.+++.+ ..+++|++|++
T Consensus        20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ----------------S---TT-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccc-hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEEC
Confidence            57899999999998754 65 5899999999994 788886 477899999999999 5677786655 46899999999


Q ss_pred             cCCCCCccC--hhhhccCCCCEEecCCCCCC-----hhHHHhhccccceeecC
Q 045186           81 DGTSITEVP--SSIELLHGLELLNLNNCKNL-----WTTIIYIMAFARSFQFD  126 (411)
Q Consensus        81 ~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~-----~~~~l~~l~~L~~L~Ls  126 (411)
                      ++|.|.++-  ..+..+++|+.|++.+|.-.     ....+..+|+|+.||-.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            999998543  45778999999999999822     22348999999999743

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=1.1e-11  Score=123.28  Aligned_cols=145  Identities=24%  Similarity=0.324  Sum_probs=94.0

Q ss_pred             eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186            4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT   83 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (411)
                      |+.|.|..|.|..+|..+.++..|++|||+. +.+..+|..++.|+ |+.|.+++ ++++.+|+.++.+..|..|+.+.|
T Consensus       100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n  176 (722)
T KOG0532|consen  100 LESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN  176 (722)
T ss_pred             HHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhh
Confidence            3444555566666666666777777777766 45666666665443 66666666 566777777766666777777777


Q ss_pred             CCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186           84 SITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus        84 ~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      .+..+|+.++.+.+|+.|++..|... .+..+. .-.|..||++.|++..      ||.++.+++.|++|-|.+|+
T Consensus       177 ei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~------iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  177 EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY------LPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee------cchhhhhhhhheeeeeccCC
Confidence            77777777777777777776666521 222233 3346677777777777      77777777777777777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.03  E-value=8.7e-11  Score=117.60  Aligned_cols=153  Identities=33%  Similarity=0.411  Sum_probs=136.1

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +|+.|++++|.+..+|..++++++|+.|++++ +.+..+|...+.+++|+.|++++ +.+..+|..++.+..|++|.+++
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcC
Confidence            89999999999999987799999999999999 57888988777899999999999 67899998877778899999999


Q ss_pred             CCCCccChhhhccCCCCEEecCCCCCCh-hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCKNLW-TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ  161 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~  161 (411)
                      |.+...+..+.++.++..|.+.+|.... ...++.+++|+.|++++|.++.      ++. ++.+.+|+.|+++++....
T Consensus       219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~------i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         219 NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS------ISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             CcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc------ccc-ccccCccCEEeccCccccc
Confidence            9888888899999999999988887554 5779999999999999999999      886 8999999999999977554


Q ss_pred             ccC
Q 045186          162 SLP  164 (411)
Q Consensus       162 ~lp  164 (411)
                      .+|
T Consensus       292 ~~~  294 (394)
T COG4886         292 ALP  294 (394)
T ss_pred             cch
Confidence            443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.99  E-value=2e-11  Score=121.50  Aligned_cols=161  Identities=20%  Similarity=0.284  Sum_probs=135.9

Q ss_pred             EEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCC
Q 045186            6 ELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSI   85 (411)
Q Consensus         6 ~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i   85 (411)
                      ..+|+.|.+.++|..+..+..|+.|.|.. +.+..+|..++++..|.+|+|+. +.+..+|..+..++ |+.|.+++|++
T Consensus        79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   79 FADLSRNRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhhccccccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecCcc
Confidence            46788888899998888888999999988 57888999999999999999999 67889999888876 89999999999


Q ss_pred             CccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccC
Q 045186           86 TEVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP  164 (411)
Q Consensus        86 ~~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp  164 (411)
                      +.+|..|+.+..|..|+.+.|. ...+..++.+.+|+.|.+..|++..      +|..+..| .|..||+++ +++..||
T Consensus       156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~------lp~El~~L-pLi~lDfSc-Nkis~iP  227 (722)
T KOG0532|consen  156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED------LPEELCSL-PLIRLDFSC-NKISYLP  227 (722)
T ss_pred             ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh------CCHHHhCC-ceeeeeccc-Cceeecc
Confidence            9999999999999999999998 3445569999999999999999999      99988855 599999986 5577777


Q ss_pred             CCC---CCCceEEecC
Q 045186          165 QIP---PNLWLVRANG  177 (411)
Q Consensus       165 ~l~---~~L~~L~~~~  177 (411)
                      --.   ..|++|-+.+
T Consensus       228 v~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLEN  243 (722)
T ss_pred             hhhhhhhhheeeeecc
Confidence            533   4455555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=9.6e-11  Score=108.57  Aligned_cols=125  Identities=22%  Similarity=0.245  Sum_probs=61.9

Q ss_pred             eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186            4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT   83 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (411)
                      |+.|+|++|.|+.+..++.-+++++.|+++.| .+..+.. +..|.+|..||||+ +.+.++-..-..+-++++|.|++|
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhhh
Confidence            45555666655555555555555666666553 3333322 44555555555555 334444333334445555555555


Q ss_pred             CCCccChhhhccCCCCEEecCCCCCChh---HHHhhccccceeecCCCCccc
Q 045186           84 SITEVPSSIELLHGLELLNLNNCKNLWT---TIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        84 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~---~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      .|..+ +.++++-+|..||+++|+....   ..+++++.|+.|.|.+|.+..
T Consensus       363 ~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  363 KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            55544 2344555555555555542211   114455555555555554444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.95  E-value=8.3e-11  Score=112.55  Aligned_cols=104  Identities=28%  Similarity=0.386  Sum_probs=77.9

Q ss_pred             ceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcc-cccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186            3 CLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLS-LPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY   79 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~   79 (411)
                      .-..|.|..|+|+.||+. |+.+++|+.|||++| .++. -|..+..+.+|..|-+.++++++.+|. .++++..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            456789999999999865 999999999999995 5554 488899999999999999899999985 456676777776


Q ss_pred             ccCCCCCccC-hhhhccCCCCEEecCCCC
Q 045186           80 LDGTSITEVP-SSIELLHGLELLNLNNCK  107 (411)
Q Consensus        80 L~~~~i~~lp-~~i~~l~~L~~L~L~~~~  107 (411)
                      +.-|++..++ ..+..+++|..|.+.+|.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~  175 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNK  175 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchh
Confidence            6666666333 235555555555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=8e-10  Score=119.79  Aligned_cols=105  Identities=30%  Similarity=0.400  Sum_probs=79.1

Q ss_pred             CceeEEEEeCCC--CCccccc-ccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            2 ECLRELLLDGTD--IKELPVS-IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~--l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      ++|+.|-+.+|.  +..++.. |..++.|++|||++|..+..+|+.|+.|-+|++|++++ +.+..+|..+++++.|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhhee
Confidence            457777777775  5566554 66788888888888888888888888888888888888 5677888888888888888


Q ss_pred             EccCCCCC-ccChhhhccCCCCEEecCCCC
Q 045186           79 YLDGTSIT-EVPSSIELLHGLELLNLNNCK  107 (411)
Q Consensus        79 ~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~  107 (411)
                      ++..+... .+|..+..+.+|++|.+..-.
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            88887655 334444458888888776543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.89  E-value=5.3e-09  Score=103.03  Aligned_cols=60  Identities=25%  Similarity=0.459  Sum_probs=28.6

Q ss_pred             CCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC-CCCccC
Q 045186           24 LSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT-SITEVP   89 (411)
Q Consensus        24 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~lp   89 (411)
                      +.+++.|++++| .++.+|.   -..+|+.|.+++|..+..+|..+  ..+|+.|++++| .+..+|
T Consensus        51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence            445555555554 4444441   11245555555555555555433  234555555554 444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=7.5e-10  Score=102.74  Aligned_cols=125  Identities=19%  Similarity=0.197  Sum_probs=64.3

Q ss_pred             CCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecC
Q 045186           25 SGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLN  104 (411)
Q Consensus        25 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~  104 (411)
                      +.|+.|||++ +.+..+..++.-++.++.|++|.| .+..+.. +..+.+|+.|||++|.++++-.+-.++-+++.|.|+
T Consensus       284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccc-cchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            3455555555 344444444444555555555553 2322222 444555555555555555444444445555555555


Q ss_pred             CCCCChhHHHhhccccceeecCCCCccccccccccc--hhhhcCCCCCEecccCcc
Q 045186          105 NCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS--VSISGLLNLKELELEDCK  158 (411)
Q Consensus       105 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp--~~l~~l~~L~~L~L~~c~  158 (411)
                      +|....-+.++.+-+|..||+++|++..      +.  ..|++++.|+.|.|.+|+
T Consensus       361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~------ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNKIETLSGLRKLYSLVNLDLSSNQIEE------LDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhHhhhhhhHhhhhheeccccccchhh------HHHhcccccccHHHHHhhcCCC
Confidence            5554444445555566666666665555      33  245555666666555554

>PLN03150 hypothetical protein; Provisional

Probab=98.82  E-value=8.5e-09  Score=109.03  Aligned_cols=106  Identities=26%  Similarity=0.280  Sum_probs=75.1

Q ss_pred             CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCC-ccChhhhccCCCCEEecC
Q 045186           26 GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSIT-EVPSSIELLHGLELLNLN  104 (411)
Q Consensus        26 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~  104 (411)
                      .++.|+|++|...+.+|..+..+++|+.|+|++|...+.+|..++.+++|+.|+|++|.++ .+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3667777776665677777777788888888876666677777777888888888888777 677777788888888887


Q ss_pred             CCC--CChhHHHhh-ccccceeecCCCCcc
Q 045186          105 NCK--NLWTTIIYI-MAFARSFQFDGKEFI  131 (411)
Q Consensus       105 ~~~--~~~~~~l~~-l~~L~~L~Ls~n~~~  131 (411)
                      +|.  +..+..++. +.++..+++.+|...
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccc
Confidence            776  233333433 345667777777543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.77  E-value=5.3e-09  Score=113.45  Aligned_cols=150  Identities=27%  Similarity=0.323  Sum_probs=115.1

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCC-Ccccccc-cCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKN-LLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~-l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      ..+.+.+-++.+..++.+.. .++|+.|-+..+.. +..++.. +..++.|+.|||++|..+..+|..++++-+|+.|++
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             heeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            35677788888877776544 34899999998653 5666554 667999999999999999999999999999999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED  156 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~  156 (411)
                      ++|.|+.+|.++++++.|.+|++..+..  ..+..+..+++|++|.+.......   ....-..+.++.+|+.|....
T Consensus       603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhhHHhhhcccchhhheeec
Confidence            9999999999999999999999998873  234557779999999987764222   111223445566666655544

>PLN03150 hypothetical protein; Provisional

Probab=98.73  E-value=3.2e-08  Score=104.67  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=47.0

Q ss_pred             CcEEEccCCCCC-ccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCE
Q 045186           75 LLELYLDGTSIT-EVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKE  151 (411)
Q Consensus        75 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~  151 (411)
                      ++.|+|++|.+. .+|..++.+++|+.|+|++|.  +..+..++.+++|+.|+|++|++.+     .+|..++.+++|+.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-----~iP~~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-----SIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-----CCchHHhcCCCCCE
Confidence            445555555555 555555555555555555554  2333445555555666666555553     25555556666666


Q ss_pred             ecccCcccccccCC
Q 045186          152 LELEDCKRLQSLPQ  165 (411)
Q Consensus       152 L~L~~c~~l~~lp~  165 (411)
                      |+|++|.....+|.
T Consensus       495 L~Ls~N~l~g~iP~  508 (623)
T PLN03150        495 LNLNGNSLSGRVPA  508 (623)
T ss_pred             EECcCCcccccCCh
Confidence            66665554444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=6.8e-10  Score=102.89  Aligned_cols=174  Identities=23%  Similarity=0.242  Sum_probs=128.9

Q ss_pred             ceeEEEEeCCCCC--cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc--hhccCCCCCcEE
Q 045186            3 CLRELLLDGTDIK--ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP--QIVASMEDLLEL   78 (411)
Q Consensus         3 ~L~~L~L~~~~l~--~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L   78 (411)
                      .|++|+|+...|+  .+..-+..+.+|+.|.|.+...-..+-..|.+-.+|+.|+|++|+.+++..  -.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4788999998887  566668889999999999865444555667788899999999999887654  356789999999


Q ss_pred             EccCCCCC--ccChhhhcc-CCCCEEecCCCCC-Ch----hHHHhhccccceeecCCCCccccccccccchhhhcCCCCC
Q 045186           79 YLDGTSIT--EVPSSIELL-HGLELLNLNNCKN-LW----TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLK  150 (411)
Q Consensus        79 ~L~~~~i~--~lp~~i~~l-~~L~~L~L~~~~~-~~----~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~  150 (411)
                      +|+.|.+.  .+...+.+. ++|+.|+|+|+.. +.    ......+++|..|||++|.....    ..-..+.+++.|+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~----~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN----DCFQEFFKFNYLQ  341 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc----hHHHHHHhcchhe
Confidence            99999765  333334443 6899999999972 22    22367889999999999865440    1334577899999


Q ss_pred             EecccCcccccc--cCC--CCCCCceEEecCCCC
Q 045186          151 ELELEDCKRLQS--LPQ--IPPNLWLVRANGCSS  180 (411)
Q Consensus       151 ~L~L~~c~~l~~--lp~--l~~~L~~L~~~~c~~  180 (411)
                      +|.++.|-.+..  +-+  -.|+|.+|++.+|-+
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            999999975421  001  137788899888854

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.72  E-value=9e-10  Score=105.58  Aligned_cols=171  Identities=19%  Similarity=0.214  Sum_probs=119.0

Q ss_pred             CCceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            1 MECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      +++|++|+|+.|+|+.| |.+|..+++|..|-+.+++.++.+|+. +.+|.+|+.|.+.-|..--...+.+..|++|..|
T Consensus        90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL  169 (498)
T KOG4237|consen   90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL  169 (498)
T ss_pred             hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence            46899999999999977 677999999999999998899999864 5678888888777743333333556677777777


Q ss_pred             EccCCCCCccCh-hhhccCCCCEEecCCCCCChh----------------------------------------------
Q 045186           79 YLDGTSITEVPS-SIELLHGLELLNLNNCKNLWT----------------------------------------------  111 (411)
Q Consensus        79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~----------------------------------------------  111 (411)
                      .+..|.+..++. ++..+.+++.+.+..|...-.                                              
T Consensus       170 slyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e  249 (498)
T KOG4237|consen  170 SLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE  249 (498)
T ss_pred             cccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH
Confidence            777777776665 566666666666554441110                                              


Q ss_pred             ------------------HHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccCcccccccCCC----CC
Q 045186          112 ------------------TIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCKRLQSLPQI----PP  168 (411)
Q Consensus       112 ------------------~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l----~~  168 (411)
                                        ..|+.+++|++|+|++|.++.      |- .++..+..++.|.|..|+ +..+..-    -.
T Consensus       250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~------i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls  322 (498)
T KOG4237|consen  250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR------IEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLS  322 (498)
T ss_pred             hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch------hhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccc
Confidence                              227788888888888888877      64 567777788888887754 3333221    14


Q ss_pred             CCceEEecCC
Q 045186          169 NLWLVRANGC  178 (411)
Q Consensus       169 ~L~~L~~~~c  178 (411)
                      .|+.|++++.
T Consensus       323 ~L~tL~L~~N  332 (498)
T KOG4237|consen  323 GLKTLSLYDN  332 (498)
T ss_pred             cceeeeecCC
Confidence            4555666553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3.4e-09  Score=102.87  Aligned_cols=149  Identities=21%  Similarity=0.316  Sum_probs=104.5

Q ss_pred             CceeEEEEeCCCCCcccc--cccCCCCccEEEEecCCCCcc---cccccCCCCCccEEEeeCCCCCcccch--hccCCCC
Q 045186            2 ECLRELLLDGTDIKELPV--SIELLSGLVQLSLKGCKNLLS---LPIAISSLKCLRNLKLSGCSKLKKFPQ--IVASMED   74 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~--si~~l~~L~~L~L~~c~~l~~---lp~~i~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~   74 (411)
                      ++|+++.|.++.+...+.  -...|++++.|||+.| .+..   +-..+..|++|+.|+|+.| .+..+-+  .-..+.+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSH  198 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhh
Confidence            567888888887765552  4677889999999884 3332   2233457889999999884 3332221  1224678


Q ss_pred             CcEEEccCCCCC--ccChhhhccCCCCEEecCCCCCCh--hHHHhhccccceeecCCCCccccccccccc--hhhhcCCC
Q 045186           75 LLELYLDGTSIT--EVPSSIELLHGLELLNLNNCKNLW--TTIIYIMAFARSFQFDGKEFISCSFDVVFS--VSISGLLN  148 (411)
Q Consensus        75 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~--~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp--~~l~~l~~  148 (411)
                      |+.|.|++|+++  ++-.....+++|+.|+|..|....  ......+..|+.|+|++|++..      .+  .-++.++.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~------~~~~~~~~~l~~  272 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID------FDQGYKVGTLPG  272 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc------cccccccccccc
Confidence            888999999888  454455667889999998885222  2225667788899999998887      66  45678888


Q ss_pred             CCEecccCcc
Q 045186          149 LKELELEDCK  158 (411)
Q Consensus       149 L~~L~L~~c~  158 (411)
                      |..|+++.|.
T Consensus       273 L~~Lnls~tg  282 (505)
T KOG3207|consen  273 LNQLNLSSTG  282 (505)
T ss_pred             hhhhhccccC
Confidence            8888888754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=2.1e-08  Score=97.44  Aligned_cols=159  Identities=18%  Similarity=0.193  Sum_probs=108.4

Q ss_pred             CCceeEEEEeCCCCCc---ccccccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCC-cccchhccCCCCC
Q 045186            1 MECLRELLLDGTDIKE---LPVSIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKL-KKFPQIVASMEDL   75 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~---lp~si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L   75 (411)
                      +++++.|+|++|-+..   +-.-...|++|+.|+|+.|....-..+. -..+++|+.|.|++|... ..+...+..+++|
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            5789999999986653   3344678999999999996533222111 125778999999998754 2333445567889


Q ss_pred             cEEEccCCC-CCccChhhhccCCCCEEecCCCCCChhH---HHhhccccceeecCCCCccccccccccchh-----hhcC
Q 045186           76 LELYLDGTS-ITEVPSSIELLHGLELLNLNNCKNLWTT---IIYIMAFARSFQFDGKEFISCSFDVVFSVS-----ISGL  146 (411)
Q Consensus        76 ~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~~---~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-----l~~l  146 (411)
                      +.|+|.+|. +..--.+..-+..|+.|+|++|......   ..+.++.|+.|+++.+.+.+.    .+|+.     ...+
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si----~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI----AEPDVESLDKTHTF  300 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh----cCCCccchhhhccc
Confidence            999999883 3322223445678899999998855443   378888999999988887761    12332     3567


Q ss_pred             CCCCEecccCcccccccC
Q 045186          147 LNLKELELEDCKRLQSLP  164 (411)
Q Consensus       147 ~~L~~L~L~~c~~l~~lp  164 (411)
                      ++|+.|++..|+ +.+++
T Consensus       301 ~kL~~L~i~~N~-I~~w~  317 (505)
T KOG3207|consen  301 PKLEYLNISENN-IRDWR  317 (505)
T ss_pred             ccceeeecccCc-ccccc
Confidence            899999998865 43333

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.51  E-value=3.3e-07  Score=90.53  Aligned_cols=151  Identities=24%  Similarity=0.420  Sum_probs=96.6

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++++.|++++|.|+.+|.   -..+|+.|.+++|..+..+|..+  ..+|+.|++++|..+..+|..      |+.|++.
T Consensus        52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~  120 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIK  120 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeC
Confidence            578999999999999883   23479999999999999998755  368999999999888888854      6777777


Q ss_pred             CCC---CCccChhhhccCCCCEEecCCCCCChhHHH--hhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186           82 GTS---ITEVPSSIELLHGLELLNLNNCKNLWTTII--YIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED  156 (411)
Q Consensus        82 ~~~---i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l--~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~  156 (411)
                      ++.   +..+|.      +|+.|.+.++.......+  .-.++|++|++++|....      +|..+.  .+|+.|.++.
T Consensus       121 ~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~------LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        121 GSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII------LPEKLP--ESLQSITLHI  186 (426)
T ss_pred             CCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCccc------Cccccc--ccCcEEEecc
Confidence            665   345664      455666654331111111  112567777777666554      443332  4666666655


Q ss_pred             cc--ccc-ccCCCCCCCceEEecCC
Q 045186          157 CK--RLQ-SLPQIPPNLWLVRANGC  178 (411)
Q Consensus       157 c~--~l~-~lp~l~~~L~~L~~~~c  178 (411)
                      +.  .+. ..+.+|+++ .|++.+|
T Consensus       187 n~~~sLeI~~~sLP~nl-~L~f~n~  210 (426)
T PRK15386        187 EQKTTWNISFEGFPDGL-DIDLQNS  210 (426)
T ss_pred             cccccccCccccccccc-Eechhhh
Confidence            32  111 122345555 6666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.39  E-value=1.7e-07  Score=88.87  Aligned_cols=174  Identities=17%  Similarity=0.146  Sum_probs=124.6

Q ss_pred             CceeEEEEeCCCCC-----cccccccCCCCccEEEEecCCCCc----cccc-------ccCCCCCccEEEeeCCCCCccc
Q 045186            2 ECLRELLLDGTDIK-----ELPVSIELLSGLVQLSLKGCKNLL----SLPI-------AISSLKCLRNLKLSGCSKLKKF   65 (411)
Q Consensus         2 ~~L~~L~L~~~~l~-----~lp~si~~l~~L~~L~L~~c~~l~----~lp~-------~i~~l~~L~~L~Ls~c~~l~~l   65 (411)
                      ..+++|+|+||.+-     .+-..+.+.++|+.-++++ -..+    .+|.       .+...++|++|+||+|-.-...
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            46889999999875     3445577888999999886 2222    2333       3446779999999997544444


Q ss_pred             c----hhccCCCCCcEEEccCCCCCccC--------------hhhhccCCCCEEecCCCCCCh------hHHHhhccccc
Q 045186           66 P----QIVASMEDLLELYLDGTSITEVP--------------SSIELLHGLELLNLNNCKNLW------TTIIYIMAFAR  121 (411)
Q Consensus        66 p----~~l~~l~~L~~L~L~~~~i~~lp--------------~~i~~l~~L~~L~L~~~~~~~------~~~l~~l~~L~  121 (411)
                      +    +-+.++..|++|+|.+|++...-              .-++.-+.|+++....|.-..      ...+...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            3    34567899999999999886322              123455789999998887221      23378889999


Q ss_pred             eeecCCCCccccccccccchhhhcCCCCCEecccCccccc--------ccCCCCCCCceEEecCC
Q 045186          122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ--------SLPQIPPNLWLVRANGC  178 (411)
Q Consensus       122 ~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~--------~lp~l~~~L~~L~~~~c  178 (411)
                      .+.+..|.+..- .+..+-..+.++++|+.|||.+|..-.        .+|.+| .|++|++.+|
T Consensus       189 evr~~qN~I~~e-G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dc  251 (382)
T KOG1909|consen  189 EVRLSQNGIRPE-GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDC  251 (382)
T ss_pred             eEEEecccccCc-hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeeccccc
Confidence            999999987652 223455678899999999999987432        234444 7899999888

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=3.4e-07  Score=66.19  Aligned_cols=58  Identities=38%  Similarity=0.453  Sum_probs=42.2

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCC
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCS   60 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~   60 (411)
                      |+|++|++++|.|+.+|. .|.++++|++|+|++| .+..+| ..+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            577888888888887774 4777888888888864 455554 456777888888887753

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.31  E-value=1.1e-07  Score=95.98  Aligned_cols=125  Identities=25%  Similarity=0.298  Sum_probs=59.1

Q ss_pred             eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186            4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT   83 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (411)
                      ++.+++..+.|..+-..+..+++|+.|++.+ +.+..+...+..+++|++|+|++ +.++.+. .+..+..|+.|++.+|
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGN  150 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheeccC
Confidence            3344444444444222244455555555555 34444433344455555555555 3344442 2334444555555555


Q ss_pred             CCCccChhhhccCCCCEEecCCCCCChhHH--HhhccccceeecCCCCccc
Q 045186           84 SITEVPSSIELLHGLELLNLNNCKNLWTTI--IYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        84 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--l~~l~~L~~L~Ls~n~~~~  132 (411)
                      .|+.+. .+..+++|+.+++++|....-..  +..+.+|+.+.+.+|.+..
T Consensus       151 ~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  151 LISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence            555443 23335555555555555333222  3555555555555554443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.1e-07  Score=88.49  Aligned_cols=148  Identities=21%  Similarity=0.275  Sum_probs=112.2

Q ss_pred             CceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCccc--ccccCCCCCccEEEeeCCCCCcccc----hhccCCCC
Q 045186            2 ECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSKLKKFP----QIVASMED   74 (411)
Q Consensus         2 ~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~l--p~~i~~l~~L~~L~Ls~c~~l~~lp----~~l~~l~~   74 (411)
                      .+|+.|.|.|+.+. .+-..|+.-.+|+.|||+.|+.+++.  .--+.+++.|..|+|++|-..+..-    ..+  -++
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~  287 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI--SET  287 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh--chh
Confidence            57889999999887 55566888899999999999988753  2235688999999999996554322    122  257


Q ss_pred             CcEEEccCCCC----CccChhhhccCCCCEEecCCCCCChhHH---HhhccccceeecCCCCccccccccccchh---hh
Q 045186           75 LLELYLDGTSI----TEVPSSIELLHGLELLNLNNCKNLWTTI---IYIMAFARSFQFDGKEFISCSFDVVFSVS---IS  144 (411)
Q Consensus        75 L~~L~L~~~~i----~~lp~~i~~l~~L~~L~L~~~~~~~~~~---l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~---l~  144 (411)
                      |+.|+|+|+.-    ..+..-..++++|..|||++|..+.++.   +..++.|++|.++.|...       +|..   +.
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-------~p~~~~~l~  360 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-------IPETLLELN  360 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-------ChHHeeeec
Confidence            88999999832    2444445688999999999999766644   778999999999998542       3432   46


Q ss_pred             cCCCCCEecccCcc
Q 045186          145 GLLNLKELELEDCK  158 (411)
Q Consensus       145 ~l~~L~~L~L~~c~  158 (411)
                      ..+.|.+|++-+|-
T Consensus       361 s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  361 SKPSLVYLDVFGCV  374 (419)
T ss_pred             cCcceEEEEecccc
Confidence            67899999999885

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.19  E-value=2.3e-07  Score=93.64  Aligned_cols=126  Identities=23%  Similarity=0.276  Sum_probs=68.7

Q ss_pred             CCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEec
Q 045186           24 LSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNL  103 (411)
Q Consensus        24 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L  103 (411)
                      +..++.++++.+ .+..+-..+..+++|+.|++.+ +.+..+...+..+++|+.|++++|.|+.+. .+..++.|+.|++
T Consensus        71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchh-hhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence            444555555552 3333223345566666666666 345555444555666666666666666554 3455555666666


Q ss_pred             CCCCCChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCcc
Q 045186          104 NNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCK  158 (411)
Q Consensus       104 ~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c~  158 (411)
                      .+|.......+..+++|+.+++++|.+..      +... +..+.+|+.+.+.+|.
T Consensus       148 ~~N~i~~~~~~~~l~~L~~l~l~~n~i~~------ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  148 SGNLISDISGLESLKSLKLLDLSYNRIVD------IENDELSELISLEELDLGGNS  197 (414)
T ss_pred             ccCcchhccCCccchhhhcccCCcchhhh------hhhhhhhhccchHHHhccCCc
Confidence            66654444445556666666666666655      4432 3555666666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.12  E-value=9.6e-08  Score=98.04  Aligned_cols=107  Identities=23%  Similarity=0.167  Sum_probs=69.4

Q ss_pred             cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecCCCCCChhHHHhhccccc
Q 045186           43 IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLNNCKNLWTTIIYIMAFAR  121 (411)
Q Consensus        43 ~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~  121 (411)
                      .++.-++.|+.|||++ +++.+.. .+..++.|++|||+.|.++.+|.. ...+. |+.|.+++|.-..-..+.++.+|+
T Consensus       181 ~SLqll~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~  257 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSH-NKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLY  257 (1096)
T ss_pred             HHHHHHHHhhhhccch-hhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhh
Confidence            3344456777777777 3455443 566777778888888777766642 22333 777777777655555577777888


Q ss_pred             eeecCCCCccccccccccc--hhhhcCCCCCEecccCcc
Q 045186          122 SFQFDGKEFISCSFDVVFS--VSISGLLNLKELELEDCK  158 (411)
Q Consensus       122 ~L~Ls~n~~~~~~~~~~lp--~~l~~l~~L~~L~L~~c~  158 (411)
                      .||+++|-+.+      ..  ..+..|..|+.|.|.+|+
T Consensus       258 ~LDlsyNll~~------hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  258 GLDLSYNLLSE------HSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ccchhHhhhhc------chhhhHHHHHHHHHHHhhcCCc
Confidence            88888775554      22  134556677777777765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.08  E-value=1.1e-07  Score=97.63  Aligned_cols=125  Identities=21%  Similarity=0.209  Sum_probs=100.9

Q ss_pred             eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186            4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT   83 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (411)
                      |...+.+.|.++.+..++.-++.|+.|||+.| .+.... .+..|+.|++|||+. +.+..+|..-..--.|+.|.+++|
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN  242 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNN  242 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeeccc
Confidence            55667788888888889999999999999995 455554 678899999999999 678888753222234999999999


Q ss_pred             CCCccChhhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccc
Q 045186           84 SITEVPSSIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        84 ~i~~lp~~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      .++.+- .|.+|++|+.||++.|-..   .-..++.+..|+.|.|.||.+-.
T Consensus       243 ~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  243 ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            999775 7899999999999998622   23448889999999999998754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.08  E-value=3.1e-06  Score=80.52  Aligned_cols=87  Identities=16%  Similarity=0.150  Sum_probs=41.0

Q ss_pred             CCCCCcEEEccCCCCCccCh-----hhhccCCCCEEecCCCCCChh------HHHhhccccceeecCCCCcccccccccc
Q 045186           71 SMEDLLELYLDGTSITEVPS-----SIELLHGLELLNLNNCKNLWT------TIIYIMAFARSFQFDGKEFISCSFDVVF  139 (411)
Q Consensus        71 ~l~~L~~L~L~~~~i~~lp~-----~i~~l~~L~~L~L~~~~~~~~------~~l~~l~~L~~L~Ls~n~~~~~~~~~~l  139 (411)
                      +-+.|+++....|.+..-+.     .+...+.|+.+.+..|.....      ..+..+++|+.|||..|-|+. .....+
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-egs~~L  233 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-EGSVAL  233 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-HHHHHH
Confidence            34455555555555543322     234445555555555542221      125555566666666655543 111112


Q ss_pred             chhhhcCCCCCEecccCcc
Q 045186          140 SVSISGLLNLKELELEDCK  158 (411)
Q Consensus       140 p~~l~~l~~L~~L~L~~c~  158 (411)
                      ...+..+++|+.|++++|.
T Consensus       234 akaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             HHHhcccchheeecccccc
Confidence            2334445555666665554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.07  E-value=4e-06  Score=60.56  Aligned_cols=57  Identities=28%  Similarity=0.406  Sum_probs=26.4

Q ss_pred             CccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCC
Q 045186           26 GLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTS   84 (411)
Q Consensus        26 ~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~   84 (411)
                      +|++|++++| .+..+|. .+..+++|++|++++| .+..+| ..+.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555553 4444442 3444555555555542 233333 234445555555555443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=1.2e-05  Score=53.91  Aligned_cols=40  Identities=28%  Similarity=0.405  Sum_probs=30.0

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLP   42 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp   42 (411)
                      ++|++|++++|+|+++|+.+++|++|+.|++++| .+.+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            5788888888888888877888888888888885 566554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=6.1e-06  Score=87.77  Aligned_cols=81  Identities=27%  Similarity=0.370  Sum_probs=37.9

Q ss_pred             CCCccEEEeeCCCCC-cccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCCh---hHHHhhcccccee
Q 045186           48 LKCLRNLKLSGCSKL-KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLW---TTIIYIMAFARSF  123 (411)
Q Consensus        48 l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~---~~~l~~l~~L~~L  123 (411)
                      ||+|+.|.++|-... ..+-....++++|..||+++|+|+.+ .+|++|++|+.|.+.+-.-..   -..+-.|++|+.|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            455555555552111 12222334455555555555555555 455555555555554433111   1124455555555


Q ss_pred             ecCCCC
Q 045186          124 QFDGKE  129 (411)
Q Consensus       124 ~Ls~n~  129 (411)
                      |+|...
T Consensus       226 DIS~~~  231 (699)
T KOG3665|consen  226 DISRDK  231 (699)
T ss_pred             eccccc
Confidence            555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=2.8e-05  Score=52.15  Aligned_cols=38  Identities=24%  Similarity=0.470  Sum_probs=19.0

Q ss_pred             CccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCcc
Q 045186           50 CLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEV   88 (411)
Q Consensus        50 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l   88 (411)
                      +|++|++++| .++.+|..+++|++|+.|++++|.|+++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            4555555552 3445555455555555555555555544

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=1.8e-05  Score=84.19  Aligned_cols=148  Identities=20%  Similarity=0.302  Sum_probs=91.0

Q ss_pred             CceeEEEEeCCCC-C-cccccccC-CCCccEEEEecCCCCc--ccccccCCCCCccEEEeeCCCCCcccchhccCCCCCc
Q 045186            2 ECLRELLLDGTDI-K-ELPVSIEL-LSGLVQLSLKGCKNLL--SLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLL   76 (411)
Q Consensus         2 ~~L~~L~L~~~~l-~-~lp~si~~-l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~   76 (411)
                      .+|++|+++|... . .-|..++. ||+|+.|.+++ ..+.  ++-.-..++++|..||+|+ ..+..+ .+++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHH
Confidence            3678888887532 2 23333443 68888888877 2221  2223345778888888888 456666 6788888888


Q ss_pred             EEEccCCCCCccC--hhhhccCCCCEEecCCCCCChhH-H-------HhhccccceeecCCCCccccccccccchhhhcC
Q 045186           77 ELYLDGTSITEVP--SSIELLHGLELLNLNNCKNLWTT-I-------IYIMAFARSFQFDGKEFISCSFDVVFSVSISGL  146 (411)
Q Consensus        77 ~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~-~-------l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l  146 (411)
                      .|.+.+=.+..-.  ..+.+|++|+.||+|.-...... .       -..+|.|+.||.|++.+...    .+...+..-
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~----~le~ll~sH  274 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE----ILEELLNSH  274 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH----HHHHHHHhC
Confidence            8888776666322  35677888888888876632221 1       33478888888888766550    112223344


Q ss_pred             CCCCEecccC
Q 045186          147 LNLKELELED  156 (411)
Q Consensus       147 ~~L~~L~L~~  156 (411)
                      ++|+.+.+-+
T Consensus       275 ~~L~~i~~~~  284 (699)
T KOG3665|consen  275 PNLQQIAALD  284 (699)
T ss_pred             ccHhhhhhhh
Confidence            5555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.71  E-value=3.8e-05  Score=70.99  Aligned_cols=176  Identities=19%  Similarity=0.176  Sum_probs=116.8

Q ss_pred             CCceeEEEEeCCCCC-----cccccccCCCCccEEEEecCCCCc----ccc-------cccCCCCCccEEEeeCCCCCcc
Q 045186            1 MECLRELLLDGTDIK-----ELPVSIELLSGLVQLSLKGCKNLL----SLP-------IAISSLKCLRNLKLSGCSKLKK   64 (411)
Q Consensus         1 l~~L~~L~L~~~~l~-----~lp~si~~l~~L~~L~L~~c~~l~----~lp-------~~i~~l~~L~~L~Ls~c~~l~~   64 (411)
                      |..+..++|+||.|.     .+...|.+-.+|++.+++. -..+    .+|       ..+-+++.|+..+||+|..-..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            346788999999875     2444577788899888886 3332    122       2355789999999999776666


Q ss_pred             cch----hccCCCCCcEEEccCCCCCccCh-----h---------hhccCCCCEEecCCCCCC------hhHHHhhcccc
Q 045186           65 FPQ----IVASMEDLLELYLDGTSITEVPS-----S---------IELLHGLELLNLNNCKNL------WTTIIYIMAFA  120 (411)
Q Consensus        65 lp~----~l~~l~~L~~L~L~~~~i~~lp~-----~---------i~~l~~L~~L~L~~~~~~------~~~~l~~l~~L  120 (411)
                      +|+    .+..-+.|++|.|.+|++..+.-     .         +..-+.|++.....|.-.      ....+..-..|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            665    45567889999999998763321     1         223467888888877621      11225556789


Q ss_pred             ceeecCCCCccccccccccchhhhcCCCCCEecccCccccc--------ccCCCCCCCceEEecCC
Q 045186          121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ--------SLPQIPPNLWLVRANGC  178 (411)
Q Consensus       121 ~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~--------~lp~l~~~L~~L~~~~c  178 (411)
                      +.+.+..|.+..-.....+-..+..+.+|+.|||++|....        .+|.++ .|++|.+.+|
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDC  252 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDC  252 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccch
Confidence            99999999775410001112345678999999999986432        134443 3788888777

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.56  E-value=6.8e-06  Score=68.49  Aligned_cols=105  Identities=23%  Similarity=0.277  Sum_probs=60.0

Q ss_pred             CccEEEEecCCCCccccc---ccCCCCCccEEEeeCCCCCcccchhcc-CCCCCcEEEccCCCCCccChhhhccCCCCEE
Q 045186           26 GLVQLSLKGCKNLLSLPI---AISSLKCLRNLKLSGCSKLKKFPQIVA-SMEDLLELYLDGTSITEVPSSIELLHGLELL  101 (411)
Q Consensus        26 ~L~~L~L~~c~~l~~lp~---~i~~l~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L  101 (411)
                      .+..++|+.|. +..+++   .+.....|+..+|++ +.++++|+.+. ..+.++.|+|.+|.|.++|..+..++.|+.|
T Consensus        28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccch-hhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            34455666652 222222   233344555556666 45566665543 2335666666666666666666666677777


Q ss_pred             ecCCCC-CChhHHHhhccccceeecCCCCccc
Q 045186          102 NLNNCK-NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus       102 ~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      +++.|. +..+..+-.+.+|-.|+..+|....
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence            776666 3333344446677777777776666

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.46  E-value=1.6e-05  Score=66.24  Aligned_cols=102  Identities=20%  Similarity=0.264  Sum_probs=84.3

Q ss_pred             eeEEEEeCCCCCccccc---ccCCCCccEEEEecCCCCcccccccCC-CCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            4 LRELLLDGTDIKELPVS---IELLSGLVQLSLKGCKNLLSLPIAISS-LKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~s---i~~l~~L~~L~L~~c~~l~~lp~~i~~-l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      +..++|+.|.|-.+++.   +.....|+..+|++ +.+.++|..+.. .+.++.|+|++ +.+..+|+.+..|+.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence            45678888887766655   44556677779998 578888877654 45899999998 67899999999999999999


Q ss_pred             ccCCCCCccChhhhccCCCCEEecCCCC
Q 045186           80 LDGTSITEVPSSIELLHGLELLNLNNCK  107 (411)
Q Consensus        80 L~~~~i~~lp~~i~~l~~L~~L~L~~~~  107 (411)
                      ++.|.+...|.-|..|.+|..|+..+|.
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCc
Confidence            9999999999988889999999988887

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.00012  Score=68.69  Aligned_cols=77  Identities=31%  Similarity=0.370  Sum_probs=37.3

Q ss_pred             ceeEEEEeCCCCC---cccccccCCCCccEEEEecCCCC---cccccccCCCCCccEEEeeCCCCC--cccchhccCCCC
Q 045186            3 CLRELLLDGTDIK---ELPVSIELLSGLVQLSLKGCKNL---LSLPIAISSLKCLRNLKLSGCSKL--KKFPQIVASMED   74 (411)
Q Consensus         3 ~L~~L~L~~~~l~---~lp~si~~l~~L~~L~L~~c~~l---~~lp~~i~~l~~L~~L~Ls~c~~l--~~lp~~l~~l~~   74 (411)
                      .++.|+|.+|.|+   ++-.-+.+++.|++|||+.|..-   .++|   ..+.+|++|.|.| +.+  +.....+..++.
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG-TGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC-CCCChhhhhhhhhcchh
Confidence            3455666666555   23333556666666666653221   1222   1344666666655 222  122233444555


Q ss_pred             CcEEEccCC
Q 045186           75 LLELYLDGT   83 (411)
Q Consensus        75 L~~L~L~~~   83 (411)
                      ++.|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.32  E-value=0.00026  Score=62.87  Aligned_cols=101  Identities=17%  Similarity=0.196  Sum_probs=64.6

Q ss_pred             CCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhc-cCCCCEEecCCCCCChh---HHHhhccccceee
Q 045186           49 KCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIEL-LHGLELLNLNNCKNLWT---TIIYIMAFARSFQ  124 (411)
Q Consensus        49 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~-l~~L~~L~L~~~~~~~~---~~l~~l~~L~~L~  124 (411)
                      .+...+||++| .+..++ .+..++.|.+|.|..|.|+.+-..+.. +++|..|.+.+|....-   ..+..++.|++|.
T Consensus        42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45667777774 344433 244567777777777777766665554 36677777777763222   1256677888888


Q ss_pred             cCCCCccccccccccch----hhhcCCCCCEecccCc
Q 045186          125 FDGKEFISCSFDVVFSV----SISGLLNLKELELEDC  157 (411)
Q Consensus       125 Ls~n~~~~~~~~~~lp~----~l~~l~~L~~L~L~~c  157 (411)
                      +-+|.++.      -..    -+..+++|+.||.++-
T Consensus       120 ll~Npv~~------k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEH------KKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhc------ccCceeEEEEecCcceEeehhhh
Confidence            88887766      331    3566788888888753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.00021  Score=65.80  Aligned_cols=80  Identities=19%  Similarity=0.124  Sum_probs=34.3

Q ss_pred             CCCCcEEEccCC--CCC-ccChhhhccCCCCEEecCCCCCChhHH---HhhccccceeecCCCCccccccccccc----h
Q 045186           72 MEDLLELYLDGT--SIT-EVPSSIELLHGLELLNLNNCKNLWTTI---IYIMAFARSFQFDGKEFISCSFDVVFS----V  141 (411)
Q Consensus        72 l~~L~~L~L~~~--~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~---l~~l~~L~~L~Ls~n~~~~~~~~~~lp----~  141 (411)
                      |++|+.|.++.|  ++. .++.....+++|++|++++|+......   +..+.+|..|++.+|..+.      +-    .
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~------l~dyre~  137 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN------LDDYREK  137 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc------cccHHHH
Confidence            344444444444  333 333333334444444444444221111   3344445555555554433      21    1


Q ss_pred             hhhcCCCCCEecccCc
Q 045186          142 SISGLLNLKELELEDC  157 (411)
Q Consensus       142 ~l~~l~~L~~L~L~~c  157 (411)
                      .+.-+++|+.|+-...
T Consensus       138 vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  138 VFLLLPSLKYLDGCDV  153 (260)
T ss_pred             HHHHhhhhcccccccc
Confidence            2334566666655543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.14  E-value=2.2e-05  Score=76.48  Aligned_cols=179  Identities=21%  Similarity=0.241  Sum_probs=105.6

Q ss_pred             eeEEEEeCCCC---CcccccccCCCCccEEEEecCCCCccc--ccccCCCCCccEEEeeCCCCCcccc--hhccCCCCCc
Q 045186            4 LRELLLDGTDI---KELPVSIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSKLKKFP--QIVASMEDLL   76 (411)
Q Consensus         4 L~~L~L~~~~l---~~lp~si~~l~~L~~L~L~~c~~l~~l--p~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~   76 (411)
                      |+.|.+.|+.=   ..+-....+++++++|++.+|..+++-  -..-..+++|++|+|..|..++...  .....+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            67777777632   233333567788888888888776642  1112356788888888887776432  2234577888


Q ss_pred             EEEccCCC-CC--ccChhhhccCCCCEEecCCCCCChhHHHhh----ccccceeecCCCCccccccccccchhhhcCCCC
Q 045186           77 ELYLDGTS-IT--EVPSSIELLHGLELLNLNNCKNLWTTIIYI----MAFARSFQFDGKEFISCSFDVVFSVSISGLLNL  149 (411)
Q Consensus        77 ~L~L~~~~-i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~----l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L  149 (411)
                      +|+++.+. |+  .+..-...+++|+.+.+.||.......+..    ..-+..+++..|+..++   ..+-..-..+..|
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD---~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD---EDLWLIACGCHAL  296 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc---hHHHHHhhhhhHh
Confidence            88888773 33  333344556667777777887665554332    33455555555543331   0011112446778


Q ss_pred             CEecccCcccccccC-----CCCCCCceEEecCCCCCCccc
Q 045186          150 KELELEDCKRLQSLP-----QIPPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       150 ~~L~L~~c~~l~~lp-----~l~~~L~~L~~~~c~~L~~l~  185 (411)
                      +.|+.++|..+.+.+     .-.++|+.|.+.+|+.+....
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~  337 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG  337 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence            888888887765432     223677777777777644443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.05  E-value=8.5e-05  Score=72.45  Aligned_cols=177  Identities=20%  Similarity=0.251  Sum_probs=98.2

Q ss_pred             CceeEEEEeCC-CCCcc--cccccCCCCccEEEEecCCCCcc--cccccCCCCCccEEEeeCCCCC--------------
Q 045186            2 ECLRELLLDGT-DIKEL--PVSIELLSGLVQLSLKGCKNLLS--LPIAISSLKCLRNLKLSGCSKL--------------   62 (411)
Q Consensus         2 ~~L~~L~L~~~-~l~~l--p~si~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~Ls~c~~l--------------   62 (411)
                      ++|+.|+|..| .|+..  -.-...+++|++|+++.|..+..  +-.-..+++.|+.+.+.||..+              
T Consensus       190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~  269 (483)
T KOG4341|consen  190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE  269 (483)
T ss_pred             chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChH
Confidence            56777888774 45422  22245678888888888876653  1112234445555555555433              


Q ss_pred             ------------cccc--hhccCCCCCcEEEccCCC-CCc--cChhhhccCCCCEEecCCCCCChhHH----Hhhccccc
Q 045186           63 ------------KKFP--QIVASMEDLLELYLDGTS-ITE--VPSSIELLHGLELLNLNNCKNLWTTI----IYIMAFAR  121 (411)
Q Consensus        63 ------------~~lp--~~l~~l~~L~~L~L~~~~-i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~----l~~l~~L~  121 (411)
                                  +...  ..-..+..|+.|+.+++. ++.  +.+-..+..+|+.|-+++|+......    -.+.+.|+
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le  349 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE  349 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence                        2111  111224556666666543 221  12223456778888888887544433    23456788


Q ss_pred             eeecCCCCccccccccccchhhhcCCCCCEecccCccccccc-----CC---CCCCCceEEecCCCCC
Q 045186          122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSL-----PQ---IPPNLWLVRANGCSSL  181 (411)
Q Consensus       122 ~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~l-----p~---l~~~L~~L~~~~c~~L  181 (411)
                      .+++.++....   ++.+-.--.+++.|+.|.|++|..+++.     ..   -...+..+.+++|+.+
T Consensus       350 ~l~~e~~~~~~---d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  350 RLDLEECGLIT---DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             hhcccccceeh---hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence            88777765443   1112222356788888888888776654     11   1245666777777544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.01  E-value=0.001  Score=59.23  Aligned_cols=119  Identities=22%  Similarity=0.298  Sum_probs=80.8

Q ss_pred             EEEEeCCCCCccccccc-CCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccC-CCCCcEEEccCC
Q 045186            6 ELLLDGTDIKELPVSIE-LLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVAS-MEDLLELYLDGT   83 (411)
Q Consensus         6 ~L~L~~~~l~~lp~si~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~-l~~L~~L~L~~~   83 (411)
                      .++|.+..+..+-. ++ -+.+...+||++| .+..++. +..++.|.+|.|++ +.+..+-+.++. +++|+.|.|.+|
T Consensus        23 e~~LR~lkip~ien-lg~~~d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   23 ELDLRGLKIPVIEN-LGATLDQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ccccccccccchhh-ccccccccceeccccc-chhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCc
Confidence            45555554432222 12 2356778889884 5565543 66788999999988 556666655554 567999999999


Q ss_pred             CCCccCh--hhhccCCCCEEecCCCCCChhH-----HHhhccccceeecCCC
Q 045186           84 SITEVPS--SIELLHGLELLNLNNCKNLWTT-----IIYIMAFARSFQFDGK  128 (411)
Q Consensus        84 ~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~-----~l~~l~~L~~L~Ls~n  128 (411)
                      +|.++-.  .+..++.|+.|.+-+|......     .+..+++|+.||..+-
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8885532  4667889999998888733222     2788899999998764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.93  E-value=0.00022  Score=72.76  Aligned_cols=161  Identities=26%  Similarity=0.338  Sum_probs=93.0

Q ss_pred             cCCCCccEEEEecCCCCcc--cccccCCCCCccEEEeeCC-CCCcccc----hhccCCCCCcEEEccCCC-CCcc-Chhh
Q 045186           22 ELLSGLVQLSLKGCKNLLS--LPIAISSLKCLRNLKLSGC-SKLKKFP----QIVASMEDLLELYLDGTS-ITEV-PSSI   92 (411)
Q Consensus        22 ~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~Ls~c-~~l~~lp----~~l~~l~~L~~L~L~~~~-i~~l-p~~i   92 (411)
                      ..++.|+.|.+.+|..+..  +-.....++.|+.|++++| ......+    .....+.+|+.|+++++. +++. -..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            3467788888888777765  3344557788888888873 3332222    223345778888888876 5522 1222


Q ss_pred             -hccCCCCEEecCCCCCChhHH----HhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc---ccccccC
Q 045186           93 -ELLHGLELLNLNNCKNLWTTI----IYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC---KRLQSLP  164 (411)
Q Consensus        93 -~~l~~L~~L~L~~~~~~~~~~----l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c---~~l~~lp  164 (411)
                       ..+++|+.|.+.+|..+.+..    ...+++|++|+|+++...++   ..+.....++++|+.|.+..+   ..++.+.
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d---~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~  341 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD---SGLEALLKNCPNLRELKLLSLNGCPSLTDLS  341 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH---HHHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence             237788888877777544332    55677788888887755431   113333444666555554433   3333321


Q ss_pred             -----CCC-CCCceEEecCCCCCCccc
Q 045186          165 -----QIP-PNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       165 -----~l~-~~L~~L~~~~c~~L~~l~  185 (411)
                           ... ..+..+.+.+|+.++.+.
T Consensus       342 l~~~~~~~~d~~~~~~~~~~~~l~~~~  368 (482)
T KOG1947|consen  342 LSGLLTLTSDDLAELILRSCPKLTDLS  368 (482)
T ss_pred             HHHhhccCchhHhHHHHhcCCCcchhh
Confidence                 122 255666666666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.64  E-value=0.00067  Score=69.16  Aligned_cols=126  Identities=25%  Similarity=0.342  Sum_probs=84.8

Q ss_pred             CceeEEEEeCC-CCCc--ccccccCCCCccEEEEecC-CCCcccc----cccCCCCCccEEEeeCCCCCcccc-hhc-cC
Q 045186            2 ECLRELLLDGT-DIKE--LPVSIELLSGLVQLSLKGC-KNLLSLP----IAISSLKCLRNLKLSGCSKLKKFP-QIV-AS   71 (411)
Q Consensus         2 ~~L~~L~L~~~-~l~~--lp~si~~l~~L~~L~L~~c-~~l~~lp----~~i~~l~~L~~L~Ls~c~~l~~lp-~~l-~~   71 (411)
                      ++|+.|.+.++ .+..  +-.....++.|+.|++++| ......+    .....+.+|+.|++++|..+...- ..+ ..
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            56777888776 4544  4455778899999999983 3333222    223456899999999987554321 222 23


Q ss_pred             CCCCcEEEccCCC-CC--ccChhhhccCCCCEEecCCCCCChhHH----HhhccccceeecCC
Q 045186           72 MEDLLELYLDGTS-IT--EVPSSIELLHGLELLNLNNCKNLWTTI----IYIMAFARSFQFDG  127 (411)
Q Consensus        72 l~~L~~L~L~~~~-i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~----l~~l~~L~~L~Ls~  127 (411)
                      +++|+.|.+.++. ++  .+-.....+++|+.|++++|.......    ..++++|+.|.+..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            7899999988876 66  454556678999999999998764432    45577777765444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.00015  Score=67.33  Aligned_cols=96  Identities=21%  Similarity=0.322  Sum_probs=51.9

Q ss_pred             CCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccCh--hhhccCCCCEEe
Q 045186           25 SGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPS--SIELLHGLELLN  102 (411)
Q Consensus        25 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~  102 (411)
                      .+.+.||+.+| .+..+. .+.+|+.|+.|.||- +++..+.. +..+++|++|+|..|.|..+-.  -+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCC-CccHHH-HHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            34445555554 333332 233556666666665 34444422 4455666666666666654432  355666777777


Q ss_pred             cCCCC-------CChhHHHhhccccceee
Q 045186          103 LNNCK-------NLWTTIIYIMAFARSFQ  124 (411)
Q Consensus       103 L~~~~-------~~~~~~l~~l~~L~~L~  124 (411)
                      |..|.       +.....+..|++|++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            76665       11123377778888776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.00094  Score=62.77  Aligned_cols=84  Identities=19%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             CCCCccEEEeeCCCCCc---ccchhccCCCCCcEEEccCCCCCccChhh-hccCCCCEEecCCCCCC---hhHHHhhccc
Q 045186           47 SLKCLRNLKLSGCSKLK---KFPQIVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNL---WTTIIYIMAF  119 (411)
Q Consensus        47 ~l~~L~~L~Ls~c~~l~---~lp~~l~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~---~~~~l~~l~~  119 (411)
                      ..+.++.|||.+| .+.   .+..++.+|+.|++|+|+.|.+...-.+. .-+.+|++|-|.|..-.   ..+.+..++.
T Consensus        69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            3566788888884 333   44455677888888888888765222222 24467777777766522   2344677778


Q ss_pred             cceeecCCCCcc
Q 045186          120 ARSFQFDGKEFI  131 (411)
Q Consensus       120 L~~L~Ls~n~~~  131 (411)
                      ++.|.++.|++.
T Consensus       148 vtelHmS~N~~r  159 (418)
T KOG2982|consen  148 VTELHMSDNSLR  159 (418)
T ss_pred             hhhhhhccchhh
Confidence            888888877443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.30  E-value=0.0029  Score=58.41  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             CCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCCh----hHHHhhccccceeecCCCCccccccccccchhhhcCC
Q 045186           72 MEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLW----TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLL  147 (411)
Q Consensus        72 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~----~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~  147 (411)
                      ...|+.|.+.+..++.+. .+-.|++|+.|.++.|....    ......+++|++|++++|.+..   ...++ .+..+.
T Consensus        42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~---lstl~-pl~~l~  116 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD---LSTLR-PLKELE  116 (260)
T ss_pred             ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc---ccccc-hhhhhc
Confidence            445555555555444221 23367889999999884211    1225556999999999998764   11122 467788


Q ss_pred             CCCEecccCcccccc------cCCCCCCCceEEecCCC
Q 045186          148 NLKELELEDCKRLQS------LPQIPPNLWLVRANGCS  179 (411)
Q Consensus       148 ~L~~L~L~~c~~l~~------lp~l~~~L~~L~~~~c~  179 (411)
                      +|..|++.+|.-.+-      +-.+.++|++|+-..+.
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            888999988874441      11234566666655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.00078  Score=62.74  Aligned_cols=77  Identities=17%  Similarity=0.128  Sum_probs=38.3

Q ss_pred             CcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccc--hhhhcCCCCCEe
Q 045186           75 LLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS--VSISGLLNLKEL  152 (411)
Q Consensus        75 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp--~~l~~l~~L~~L  152 (411)
                      .+.|+..||++.++. .+.+++.|+.|.|+-|+...-..+..++.|++|+|..|.|.+      +.  ..+.++++|+.|
T Consensus        21 vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s------ldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES------LDELEYLKNLPSLRTL   93 (388)
T ss_pred             hhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc------HHHHHHHhcCchhhhH
Confidence            344444444444331 233444455555554444434445555566666666665555      43  234555666666


Q ss_pred             cccCcc
Q 045186          153 ELEDCK  158 (411)
Q Consensus       153 ~L~~c~  158 (411)
                      -|..|+
T Consensus        94 WL~ENP   99 (388)
T KOG2123|consen   94 WLDENP   99 (388)
T ss_pred             hhccCC
Confidence            665554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.89  E-value=0.0032  Score=35.39  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=13.2

Q ss_pred             ceeEEEEeCCCCCcccccccC
Q 045186            3 CLRELLLDGTDIKELPVSIEL   23 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~   23 (411)
                      +|++|+|++|.|+.+|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            466666666666666665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.87  E-value=0.014  Score=54.38  Aligned_cols=155  Identities=17%  Similarity=0.124  Sum_probs=102.7

Q ss_pred             CceeEEEEeCC--C-CC-ccc-------ccccCCCCccEEEEecCCCCccccc----ccCCCCCccEEEeeCCCCCcccc
Q 045186            2 ECLRELLLDGT--D-IK-ELP-------VSIELLSGLVQLSLKGCKNLLSLPI----AISSLKCLRNLKLSGCSKLKKFP   66 (411)
Q Consensus         2 ~~L~~L~L~~~--~-l~-~lp-------~si~~l~~L~~L~L~~c~~l~~lp~----~i~~l~~L~~L~Ls~c~~l~~lp   66 (411)
                      ++|+..+++.-  + .+ +++       +.+..|++|+..+|+.|..-...|.    -|..-+.|++|.+++| .++.+.
T Consensus        58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~a  136 (388)
T COG5238          58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIA  136 (388)
T ss_pred             cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccc
Confidence            35666666652  2 12 333       3467889999999999765444443    3556788999999985 444332


Q ss_pred             h--------------hccCCCCCcEEEccCCCCCccChh-----hhccCCCCEEecCCCCCChhH-------HHhhcccc
Q 045186           67 Q--------------IVASMEDLLELYLDGTSITEVPSS-----IELLHGLELLNLNNCKNLWTT-------IIYIMAFA  120 (411)
Q Consensus        67 ~--------------~l~~l~~L~~L~L~~~~i~~lp~~-----i~~l~~L~~L~L~~~~~~~~~-------~l~~l~~L  120 (411)
                      .              ...+-+.|+..+...|.+...|..     +..=.+|+.+.+..|......       .+..+.+|
T Consensus       137 G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L  216 (388)
T COG5238         137 GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL  216 (388)
T ss_pred             hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence            1              123457899999999988866643     222368999999888743331       15678999


Q ss_pred             ceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186          121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus       121 ~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      +.|+|..|-|+. .....+...+...+.|+.|.+.+|-
T Consensus       217 evLDlqDNtft~-~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         217 EVLDLQDNTFTL-EGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             eeeeccccchhh-hhHHHHHHHhcccchhhhccccchh
Confidence            999999998876 1111122334556778999999985

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.77  E-value=0.014  Score=32.65  Aligned_cols=21  Identities=19%  Similarity=0.283  Sum_probs=15.7

Q ss_pred             ccceeecCCCCccccccccccchhhhc
Q 045186          119 FARSFQFDGKEFISCSFDVVFSVSISG  145 (411)
Q Consensus       119 ~L~~L~Ls~n~~~~~~~~~~lp~~l~~  145 (411)
                      +|++|+|++|+++.      +|.++++
T Consensus         1 ~L~~Ldls~n~l~~------ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS------IPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESE------EGTTTTT
T ss_pred             CccEEECCCCcCEe------CChhhcC
Confidence            47788888888887      8876544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.68  E-value=0.11  Score=42.71  Aligned_cols=79  Identities=10%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             ccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCCCCCccChh-hhccCC
Q 045186           21 IELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGTSITEVPSS-IELLHG   97 (411)
Q Consensus        21 i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~   97 (411)
                      |.++++|+.+.+..  .+..++. .+..+.+|+.+.+.+ + +..++. .+.++++|+.+.+.. .+..++.. +..+++
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            55556666666653  3444433 244455666666655 2 444443 334444566666643 33333322 333455


Q ss_pred             CCEEecC
Q 045186           98 LELLNLN  104 (411)
Q Consensus        98 L~~L~L~  104 (411)
                      |+.+.+.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            5555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.40  E-value=0.14  Score=42.06  Aligned_cols=97  Identities=22%  Similarity=0.306  Sum_probs=55.7

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L   78 (411)
                      ++|+.+.+.. .++.++. +|.++++|+.+.+.+  .+..++. .+..+++|+.+.+.+  .+..++. .+..+++|+.+
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--ccccccccccccccccccc
Confidence            4788888875 5777754 488888999999987  3666654 355677899999965  4555554 45668999999


Q ss_pred             EccCCCCCccChh-hhccCCCCEEecCC
Q 045186           79 YLDGTSITEVPSS-IELLHGLELLNLNN  105 (411)
Q Consensus        79 ~L~~~~i~~lp~~-i~~l~~L~~L~L~~  105 (411)
                      .+..+ +..++.. +.++ +|+.+.+.+
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            99765 6655543 4444 777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.78  E-value=0.037  Score=28.93  Aligned_cols=17  Identities=35%  Similarity=0.513  Sum_probs=7.6

Q ss_pred             CceeEEEEeCCCCCccc
Q 045186            2 ECLRELLLDGTDIKELP   18 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp   18 (411)
                      ++|+.|+|++|.|+++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35666666666665554

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.68  E-value=0.025  Score=50.55  Aligned_cols=81  Identities=20%  Similarity=0.193  Sum_probs=54.2

Q ss_pred             CCCcEEEccCCCCC-ccChhhhccCCCCEEecCCCCCChhHHHh----hccccceeecCCCC-ccccccccccchhhhcC
Q 045186           73 EDLLELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNLWTTIIY----IMAFARSFQFDGKE-FISCSFDVVFSVSISGL  146 (411)
Q Consensus        73 ~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~l~----~l~~L~~L~Ls~n~-~~~~~~~~~lp~~l~~l  146 (411)
                      ..++.++.+++.|. +--..+..+++++.|.+.+|+...+..+.    ..++|+.|+|++|. |++    . =-.++..+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~----~-GL~~L~~l  175 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD----G-GLACLLKL  175 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech----h-HHHHHHHh
Confidence            34677888888776 44456777788888888888866654433    34678888888774 333    1 12356777


Q ss_pred             CCCCEecccCcc
Q 045186          147 LNLKELELEDCK  158 (411)
Q Consensus       147 ~~L~~L~L~~c~  158 (411)
                      ++|+.|.|.+-+
T Consensus       176 knLr~L~l~~l~  187 (221)
T KOG3864|consen  176 KNLRRLHLYDLP  187 (221)
T ss_pred             hhhHHHHhcCch
Confidence            788887777643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.76  E-value=0.077  Score=27.69  Aligned_cols=16  Identities=31%  Similarity=0.526  Sum_probs=5.9

Q ss_pred             CCcEEEccCCCCCccC
Q 045186           74 DLLELYLDGTSITEVP   89 (411)
Q Consensus        74 ~L~~L~L~~~~i~~lp   89 (411)
                      +|+.|+|++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3455555555544443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.72  E-value=0.085  Score=47.20  Aligned_cols=79  Identities=13%  Similarity=0.122  Sum_probs=45.2

Q ss_pred             CccEEEeeCCCCCcccchhccCCCCCcEEEccCCCC-C-ccChhhh-ccCCCCEEecCCCCCChhHH---Hhhcccccee
Q 045186           50 CLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSI-T-EVPSSIE-LLHGLELLNLNNCKNLWTTI---IYIMAFARSF  123 (411)
Q Consensus        50 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i-~-~lp~~i~-~l~~L~~L~L~~~~~~~~~~---l~~l~~L~~L  123 (411)
                      .++.++-+++.....--+.+.+++.|+.|.+.+|.- . .--..++ -.++|+.|+|++|..+++..   +..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            455666666443333334455566666666665532 1 1111122 23678888888888776654   6677777777


Q ss_pred             ecCCC
Q 045186          124 QFDGK  128 (411)
Q Consensus       124 ~Ls~n  128 (411)
                      .|.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            76653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.57  E-value=0.21  Score=28.94  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=14.8

Q ss_pred             CCceeEEEEeCCCCCccccc
Q 045186            1 MECLRELLLDGTDIKELPVS   20 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~s   20 (411)
                      |++|++|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46777888888877777764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.57  E-value=0.21  Score=28.94  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=14.8

Q ss_pred             CCceeEEEEeCCCCCccccc
Q 045186            1 MECLRELLLDGTDIKELPVS   20 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~s   20 (411)
                      |++|++|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46777888888877777764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.43  E-value=0.34  Score=28.01  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=16.2

Q ss_pred             CCCCcEEEccCCCCCccChhh
Q 045186           72 MEDLLELYLDGTSITEVPSSI   92 (411)
Q Consensus        72 l~~L~~L~L~~~~i~~lp~~i   92 (411)
                      +++|+.|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888887654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.43  E-value=0.34  Score=28.01  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=16.2

Q ss_pred             CCCCcEEEccCCCCCccChhh
Q 045186           72 MEDLLELYLDGTSITEVPSSI   92 (411)
Q Consensus        72 l~~L~~L~L~~~~i~~lp~~i   92 (411)
                      +++|+.|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888887654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.34  E-value=0.013  Score=59.98  Aligned_cols=156  Identities=22%  Similarity=0.219  Sum_probs=92.5

Q ss_pred             eeEEEEeCCCCCc-----ccccccCCCCccEEEEecCCCCcc----cccccCCC-CCccEEEeeCCCCCc----ccchhc
Q 045186            4 LRELLLDGTDIKE-----LPVSIELLSGLVQLSLKGCKNLLS----LPIAISSL-KCLRNLKLSGCSKLK----KFPQIV   69 (411)
Q Consensus         4 L~~L~L~~~~l~~-----lp~si~~l~~L~~L~L~~c~~l~~----lp~~i~~l-~~L~~L~Ls~c~~l~----~lp~~l   69 (411)
                      +..|.|.+|.+..     +-..+.....|..|++++|+....    +-..+... ..|++|.+..|....    .+.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5566777776652     334466778888888888643311    11112222 467777777765432    344566


Q ss_pred             cCCCCCcEEEccCCCCC-----ccChhhh----ccCCCCEEecCCCCCChhH------HHhhccc-cceeecCCCCcccc
Q 045186           70 ASMEDLLELYLDGTSIT-----EVPSSIE----LLHGLELLNLNNCKNLWTT------IIYIMAF-ARSFQFDGKEFISC  133 (411)
Q Consensus        70 ~~l~~L~~L~L~~~~i~-----~lp~~i~----~l~~L~~L~L~~~~~~~~~------~l~~l~~-L~~L~Ls~n~~~~~  133 (411)
                      .....|+.++++.|.+.     .++..+.    ...++++|+++.|......      .+...++ +..|++..|.+.. 
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d-  247 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD-  247 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch-
Confidence            66777888888888663     2233333    3667888888888744332      2555555 6668888876654 


Q ss_pred             ccccccchhhhcC-CCCCEecccCcccc
Q 045186          134 SFDVVFSVSISGL-LNLKELELEDCKRL  160 (411)
Q Consensus       134 ~~~~~lp~~l~~l-~~L~~L~L~~c~~l  160 (411)
                      .....+...+..+ ..++.++++.|...
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~  275 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSIT  275 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence            1122233445555 66778888877643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.48  E-value=0.012  Score=53.62  Aligned_cols=85  Identities=18%  Similarity=0.160  Sum_probs=50.1

Q ss_pred             ccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCE
Q 045186           21 IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLEL  100 (411)
Q Consensus        21 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~  100 (411)
                      +......+.||++.+ .+..+-..+..++.|..|+++. +.+..+|+..+.+..+..+++..|..+..|.+.+.++.++.
T Consensus        38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            455556666666663 4444444455556666666665 44556666666666666666666666666666666666665


Q ss_pred             EecCCCC
Q 045186          101 LNLNNCK  107 (411)
Q Consensus       101 L~L~~~~  107 (411)
                      +++.++.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            5555544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.42  E-value=0.091  Score=48.12  Aligned_cols=84  Identities=17%  Similarity=0.096  Sum_probs=44.8

Q ss_pred             CCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecC
Q 045186           47 SLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFD  126 (411)
Q Consensus        47 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls  126 (411)
                      .....+.||++. +.+..+-..+.-++.|..|+++.|.|..+|..++.                      +..+..+++.
T Consensus        40 ~~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q----------------------~~e~~~~~~~   96 (326)
T KOG0473|consen   40 SFKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQ----------------------QRETVNAASH   96 (326)
T ss_pred             ccceeeeehhhh-hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHH----------------------HHHHHHHHhh
Confidence            344455555555 22333333333344445555555555555544444                      4444555555


Q ss_pred             CCCccccccccccchhhhcCCCCCEecccCccc
Q 045186          127 GKEFISCSFDVVFSVSISGLLNLKELELEDCKR  159 (411)
Q Consensus       127 ~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~  159 (411)
                      .|+.+.      .|.+.+.+++++.+++.++..
T Consensus        97 ~n~~~~------~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   97 KNNHSQ------QPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccchhh------CCccccccCCcchhhhccCcc
Confidence            566666      777777777777777766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	411
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		3e-05

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 16/171 (9%)
Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L+   +D   + ELP + +  +GL  L+L     L +LP +I+SL  LR L +  C +L 
Sbjct: 106 LQHXTIDAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 64  KFPQIVASME---------DLLELYLDGTSITEVPSSIXXXXXXXXXX-XXXXXXXWTTI 113
           + P+ +AS +         +L  L L+ T I  +P+SI                      
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 114 IYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
           I+ +         G     C+    +     G   LK L L+DC  L +LP
Sbjct: 225 IHHLPKLEELDLRG-----CTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	411
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 1e-25
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 41/196 (20%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
           +  L+ + +D   + ELP +++  +GL  L+L     L +LP +I+SL  LR L +  C 
Sbjct: 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACP 161

Query: 61  KLKKFP---------QIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWT 111
           +L + P              + +L  L L+ T I  +P+SI  L  L+ L + N      
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL--- 218

Query: 112 TIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIP---P 168
                                         +I  L  L+EL+L  C  L++ P I     
Sbjct: 219 -------------------------SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 169 NLWLVRANGCSSLVTL 184
            L  +    CS+L+TL
Sbjct: 254 PLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 1e-24
 Identities = 43/171 (25%), Positives = 62/171 (36%), Gaps = 29/171 (16%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
           +  L+ L L+ T I+ LP SI  L  L  L ++    L +L  AI  L  L  L L GC+
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCT 240

Query: 61  KLKKFPQIVASMEDLLELYL-DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAF 119
            L+ +P I      L  L L D +++  +P  I  L  LE L+L  C NL          
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL---------- 290

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
                                  I+ L     + +    + Q     P   
Sbjct: 291 -----------------SRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.1 bits (245), Expect = 4e-23
 Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 37/170 (21%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLP---------IAISSLKCLRNL 54
           L  L L    ++ LP SI  L+ L +LS++ C  L  LP              L  L++L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 55  KLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTII 114
           +L   + ++  P  +A++++L  L +  + ++ +  +I  L  LE L+L  C  L     
Sbjct: 189 RLE-WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN--- 244

Query: 115 YIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                                   +     G   LK L L+DC  L +LP
Sbjct: 245 ------------------------YPPIFGGRAPLKRLILKDCSNLLTLP 270

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 2e-20
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 12/169 (7%)

Query: 4   LRELLLDGTDIKELPVSIELLS--GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
            +     G  +K     +E  +  G V L L+    L   P     L  L+++ +     
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-G 115

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTI---IYIMA 118
           L + P  +     L  L L    +  +P+SI  L+ L  L++  C  L T +   +    
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL-TELPEPLASTD 174

Query: 119 FARSFQFDG--KEF-ISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
            +   Q     +   +  +       SI+ L NLK L++ +   L +L 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALG 222

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 7e-18
 Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 33/185 (17%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLP--IAISSLKCLRNLKLSGCSK 61
            +       +           +   Q+  +  + L +    +  ++      L+L     
Sbjct: 35  WQRHYNADRNRWHSAWRQANSNNP-QIETRTGRALKATADLLEDATQPGRVALELRSV-P 92

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFAR 121
           L +FP     +  L  + +D   + E+P +++   GLE L L     L            
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-L------------ 139

Query: 122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQ-IPPNLWLVRANGCSS 180
                               SI+ L  L+EL +  C  L  LP+ +          G  +
Sbjct: 140 ---------------RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 181 LVTLS 185
           L +L 
Sbjct: 185 LQSLR 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 9e-12
 Identities = 20/162 (12%), Positives = 39/162 (24%), Gaps = 50/162 (30%)

Query: 24  LSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI--------------- 68
            SG   L  +G   L      +S  +   N   +      +                   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 69  ------VASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARS 122
                  A+    + L L    + + P     L  L+ + ++           +M     
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG--------LME---- 118

Query: 123 FQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                              ++     L+ L L     L++LP
Sbjct: 119 ----------------LPDTMQQFAGLETLTLARNP-LRALP 143

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 30/180 (16%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSL-------------KC 50
           L+E L   +++ E+PV  E +    +      +   + P                   + 
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ 72

Query: 51  LRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLW 110
              L+L+    L   P+       L  L     S+TE+P   + L  L + N N      
Sbjct: 73  AHELELNNL-GLSSLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL----- 123

Query: 111 TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
             +  +            +             +     LK +++++   L+ LP +PP+L
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLP-------ELQNSSFLKIIDVDNNS-LKKLPDLPPSL 175

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 40/169 (23%)

Query: 2   ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
             L  L +    +++LP  ++  S L  + +     L  LP        L  +      +
Sbjct: 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLP---DLPPSLEFIAAGNN-Q 184

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFAR 121
           L++ P++  ++  L  +Y D  S+ ++P   +L   LE +   N  N+   +        
Sbjct: 185 LEELPEL-QNLPFLTAIYADNNSLKKLP---DLPLSLESIVAGN--NILEEL-------- 230

Query: 122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
                                +  L  L  +  ++   L++LP +PP+L
Sbjct: 231 -------------------PELQNLPFLTTIYADNN-LLKTLPDLPPSL 259

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 20/176 (11%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  +      ++ELP  ++ L  L  +       L  LP        L ++       L+
Sbjct: 175 LEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLP---DLPLSLESIVAGNN-ILE 228

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLN---------NCKNLWTTII 114
           + P++  ++  L  +Y D   +  +P     L  L + +           +   L  +  
Sbjct: 229 ELPEL-QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287

Query: 115 YIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
                +         +++ S             +L+EL + + K L  LP +PP L
Sbjct: 288 IFSGLSEL--PPNLYYLNAS-SNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRL 339

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 54/183 (29%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS--- 60
             EL L+   +  LP   EL   L  L    C +L  LP    SLK L     +  +   
Sbjct: 73  AHELELNNLGLSSLP---ELPPHLESLVA-SCNSLTELPELPQSLKSLLVDNNNLKALSD 128

Query: 61  -------------KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK 107
                        +L+K P++  +   L  + +D  S+ ++P        LE +   N  
Sbjct: 129 LPPLLEYLGVSNNQLEKLPEL-QNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGN-- 182

Query: 108 NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIP 167
           N    +                             +  L  L  +  ++   L+ LP +P
Sbjct: 183 NQLEELP---------------------------ELQNLPFLTAIYADNNS-LKKLPDLP 214

Query: 168 PNL 170
            +L
Sbjct: 215 LSL 217

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 27/170 (15%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
            + L  L +       L    EL   L  L+    + + SL         L  L +S   
Sbjct: 276 PQSLTFLDVSENIFSGLS---ELPPNLYYLNASSNE-IRSLC---DLPPSLEELNVSNN- 327

Query: 61  KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
           KL + P   A    L  L      + EVP   +    L+ L++    N       I    
Sbjct: 328 KLIELP---ALPPRLERLIASFNHLAEVPELPQ---NLKQLHVEY--NPLREFPDIPESV 379

Query: 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
              + +             +       NLK+L +E    L+  P IP ++
Sbjct: 380 EDLRMNSH----------LAEVPELPQNLKQLHVETN-PLREFPDIPESV 418

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 55/203 (27%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
           +  L  +  D   +K LP   +L   L  L+++    L  LP    SL  L   +    S
Sbjct: 236 LPFLTTIYADNNLLKTLP---DLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENIF-S 290

Query: 61  KLKKFP--------------QIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNC 106
            L + P               +      L EL +    + E+P+       LE L  +  
Sbjct: 291 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASF- 346

Query: 107 KNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI 166
            N    +                                  NLK+L +E    L+  P I
Sbjct: 347 -NHLAEV-----------------------------PELPQNLKQLHVEYN-PLREFPDI 375

Query: 167 PPNL-WLVRANGCSSLVTLSGAL 188
           P ++  L   +  + +  L   L
Sbjct: 376 PESVEDLRMNSHLAEVPELPQNL 398

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L++L ++   ++E P   E +       L+   +L  +P    +LK L    +     L+
Sbjct: 359 LKQLHVEYNPLREFPDIPESVE-----DLRMNSHLAEVPELPQNLKQLH---VETN-PLR 409

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNCK 107
           +FP I  S+E   +L ++   + +    + E    LE     +  
Sbjct: 410 EFPDIPESVE---DLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 12/103 (11%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  L+     + E+P   EL   L QL ++    L   P    S++      L   S L 
Sbjct: 339 LERLIASFNHLAEVP---ELPQNLKQLHVEYNP-LREFPDIPESVE-----DLRMNSHLA 389

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNC 106
           + P++  +   L +L+++   + E P   E +  L + +    
Sbjct: 390 EVPELPQN---LKQLHVETNPLREFPDIPESVEDLRMNSERVV 429

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 70  ASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKE 129
            S   L E     +++TE+P   E +           +  W                   
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE--WERNA------------PPG 53

Query: 130 FISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
                   V  +         ELEL +   L SLP++PP+L
Sbjct: 54  NGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPELPPHL 93

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 23/194 (11%), Positives = 61/194 (31%), Gaps = 15/194 (7%)

Query: 1   MECLRELLLDGTDIKELPVSIEL--LSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSG 58
              ++   +   +++E P S  L  +  L  L      N +    A  +   L +LKL  
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH--NKVRHLEAFGTNVKLTDLKLDY 604

Query: 59  CSKLKKFP-QIVASMEDLLELYLDGTSITEVPSSIEL--LHGLELLNLNNCKNLWTTIIY 115
             ++++ P    A  + +  L      +  +P+      ++ +  ++ +   N   +   
Sbjct: 605 N-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY--NKIGSEGR 661

Query: 116 -IMAFARSFQFDGKEFI---SCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLW 171
            I      ++      +           +   +    +  + L +   + S+P+      
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPK 720

Query: 172 LVRANGCSSLVTLS 185
                    L T+ 
Sbjct: 721 DGNYKNTYLLTTID 734

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 26/196 (13%), Positives = 59/196 (30%), Gaps = 48/196 (24%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSG-- 58
           ++            +   +S   L  L  + L  C N+  LP  +  L  L++L ++   
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 59  -------CSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIEL--LHGLELLNLNNCKNL 109
                   +   +      +   +   Y+   ++ E P+S  L  +  L LL+  +  N 
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH--NK 584

Query: 110 WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPN 169
              +                            +    + L +L+L+  +    + +IP +
Sbjct: 585 VRHLE---------------------------AFGTNVKLTDLKLDYNQ----IEEIPED 613

Query: 170 LWLVRANGCSSLVTLS 185
                      +  L 
Sbjct: 614 FC----AFTDQVEGLG 625

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 16/145 (11%)

Query: 4   LRELLLDGTDIKELPVSIEL--LSGLVQLSLKGCKNLLSLPIAISSLKCLR------NLK 55
           L  + L    +  L        L  L  + +       S P    +   L+         
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRD 788

Query: 56  LSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLW----T 111
             G   L+++P  + +   L++L +    I +V    +L   L +L++ +  N+     +
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE--KLTPQLYILDIADNPNISIDVTS 846

Query: 112 TIIYIMAFARSFQFDGKEFI-SCSF 135
              YI A      +D  + I  C  
Sbjct: 847 VCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 9e-09
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 25/190 (13%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS--K 61
           L+ L                      +S +  K+ + +      L   + L LS      
Sbjct: 349 LKVLSFGTHSETVSGRLFGDEELTPDMSEE-RKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407

Query: 62  LKKFPQIVA----SMEDLLELYLDGTS--ITEVPSSIELLHGLELLNLNNCKNLWTTIIY 115
           + + P++      S   L +  +   +  IT +  +I+ L  L+++   N          
Sbjct: 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-------- 459

Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRA 175
                 +  ++              +S S L +L ++EL +C  +     +P  L+    
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ---LPDFLY---- 512

Query: 176 NGCSSLVTLS 185
                L +L+
Sbjct: 513 -DLPELQSLN 521

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 31/181 (17%)

Query: 6   ELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKF 65
           ++      I  +  +I+ L+ L  +            IA+       +       + +  
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVD----WEDANSDYAKQYENE 483

Query: 66  PQIVASMEDLLELYL-DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQ 124
               ++++DL ++ L +  ++T++P  +  L  L+ LN+    N   +   + A      
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC--NRGISAAQLKADWTRL- 540

Query: 125 FDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTL 184
                          +        ++   +        L + P +  L        L  L
Sbjct: 541 ---------------ADDEDTGPKIQIFYMGYNN----LEEFPASASL---QKMVKLGLL 578

Query: 185 S 185
            
Sbjct: 579 D 579

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 20/188 (10%), Positives = 56/188 (29%), Gaps = 25/188 (13%)

Query: 4   LRELLLDGTDIKELPVSIELLSG------LVQLSLKGCKNLLSLPI-AISSLKCLRNLKL 56
           +  +      I     +I              ++L     +   P    ++   +  + L
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIIL 704

Query: 57  SGCS-------KLKKFPQIVASMEDLLELYLDGTSITEVPSSIEL--LHGLELLNLNNCK 107
           S           LK       +   L  + L    +T +        L  L  ++++   
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY-- 762

Query: 108 NLWTTI---IYIMAFARSFQFDGKEFISC-SFDVVFSVSISGLLNLKELELEDCKRLQSL 163
           N +++        +  ++F    +           +   I+   +L +L++     ++ +
Sbjct: 763 NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKV 821

Query: 164 P-QIPPNL 170
             ++ P L
Sbjct: 822 DEKLTPQL 829

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 27/207 (13%), Positives = 56/207 (27%), Gaps = 54/207 (26%)

Query: 4   LRELLLDGTDIKELPVSIEL--LSGLVQLSLKGCKNLLSLPIAISS------LKCLRNLK 55
           +  L      +K +P       +  +  +       + S    IS             + 
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVT 679

Query: 56  LSGCSKLKKFP-QIVASMEDLLELYLDGTSITEVPS--------SIELLHGLELLNLNNC 106
           LS   +++KFP ++ A+   +  + L    +T +P         + +  + L  ++L   
Sbjct: 680 LSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF- 737

Query: 107 KNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI 166
            N  T++                              + L  L  +++       S P  
Sbjct: 738 -NKLTSLSD------------------------DFRATTLPYLSNMDVSYN-CFSSFPTQ 771

Query: 167 PPNLWLVRANGCSSLVTLSGALNLRKS 193
           P N         S L            
Sbjct: 772 PLN--------SSQLKAFGIRHQRDAE 790

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 19/179 (10%), Positives = 44/179 (24%), Gaps = 18/179 (10%)

Query: 9   LDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKC--LRNLKLSGCSKLKKFP 66
               +    P  I       Q          +            L    ++   + K   
Sbjct: 117 EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

Query: 67  QIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFD 126
           +         ++     +IT V  ++  L  L    + N        I       + ++ 
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEY- 234

Query: 127 GKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLS 185
                         +    L +L ++E+ +C  L     +P  L          +  ++
Sbjct: 235 ------AQQYKTEDLKWDNLKDLTDVEVYNCPNLTK---LPTFLK-----ALPEMQLIN 279

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 24/189 (12%), Positives = 62/189 (32%), Gaps = 35/189 (18%)

Query: 1   MECLRELLLDGTDIKELPV--SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSG 58
            E ++ + +   ++K  PV  S++ +  L  L       L     A  S   L +L L+ 
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAY 362

Query: 59  CSKLKKFP-QIVASMEDLLELYLDGTSITEVPSSIEL--LHGLELLNLNNCKNLWTTIIY 115
             ++ + P       E +  L      +  +P+  +   +  +  ++ +   N       
Sbjct: 363 N-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY--N------- 412

Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRA 175
                   +      +          +    +N+  + L + +    + + P  L+    
Sbjct: 413 --------EIGS---VDGKNFDPLDPTPFKGINVSSINLSNNQ----ISKFPKELF---- 453

Query: 176 NGCSSLVTL 184
           +  S L ++
Sbjct: 454 STGSPLSSI 462

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 47/201 (23%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCK-------------------NLLSLPIA 44
             ++     +I  +  ++  L+ L Q  +                          +  + 
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 45  ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLN 104
             +LK L ++++  C  L K P  + ++ ++  + +            +      L +  
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ--ALADAP 302

Query: 105 NCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVV-FSVSISGLLNLKELELEDCKRLQSL 163
             + +   IIYI                 +        S+  +  L  LE    +    L
Sbjct: 303 VGEKI--QIIYIG--------------YNNLKTFPVETSLQKMKKLGMLECLYNQ----L 342

Query: 164 PQIPPNLWLVRANGCSSLVTL 184
               P            L +L
Sbjct: 343 EGKLPAFG-----SEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 25/178 (14%), Positives = 60/178 (33%), Gaps = 34/178 (19%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCK-------NLLSLPIAISSLKCLRNLK 55
           +  + L    I + P  +    S L  ++L G         +L        +   L ++ 
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 56  LSGCSKLKKFPQ--IVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTI 113
           L    KL K        ++  L+ + L   S ++ P+       L+   + N ++     
Sbjct: 495 LRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA---- 549

Query: 114 IYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP-QIPPNL 170
                  +  +   +          +   I+   +L +L++     ++ +  +I PN+
Sbjct: 550 -------QGNRTLRE----------WPEGITLCPSLTQLQIGSN-DIRKVNEKITPNI 589

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 39/192 (20%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPIA--ISSLKCLRNLKLSG-- 58
           L  L L    I E+P +       +  LS    K L  +P      S+  +  +  S   
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 59  -----CSKLKKFPQIVASMEDLLELYLDGTSITEVP-SSIELLHGLELLNLNNCKNLWTT 112
                               ++  + L    I++ P         L  +NL         
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN------ 467

Query: 113 IIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWL 172
                             I  +     + +      L  ++L   K L     +  +   
Sbjct: 468 -----------MLTE---IPKNSLKDENENFKNTYLLTSIDLRFNK-LTK---LSDDF-- 507

Query: 173 VRANGCSSLVTL 184
            RA     LV +
Sbjct: 508 -RATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 4   LRELLLDGTDIKELPVSIEL--LSGLVQLSLKGCKNLLSLPIAISSLKCLR------NLK 55
           L  + L    + +L        L  LV + L    +    P    +   L+         
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRD 548

Query: 56  LSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTI 113
             G   L+++P+ +     L +L +    I +V   I     + +L++ +  N+   +
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDL 604

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 37/192 (19%), Positives = 56/192 (29%), Gaps = 35/192 (18%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKC------------- 50
           L+EL +    +  LP     L  L   + +    L SLP   S LK              
Sbjct: 183 LQELSVSDNQLASLPTLPSELYKLWAYNNR----LTSLPALPSGLKELIVSGNRLTSLPV 238

Query: 51  ----LRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNC 106
               L+ L +SG  +L   P        LL L +    +T +P S+  L     +NL   
Sbjct: 239 LPSELKELMVSGN-RLTSLP---MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294

Query: 107 KNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISG---------LLNLKELELEDC 157
             L    +  +    S        I        +   +          L+  +E E    
Sbjct: 295 P-LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 158 KRLQSLPQIPPN 169
            R     Q    
Sbjct: 354 DRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 43/167 (25%), Positives = 62/167 (37%), Gaps = 26/167 (15%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L +L + G  +  LP    L  GL +LS+   + L SLP   S L     L      +L 
Sbjct: 123 LCKLWIFGNQLTSLP---VLPPGLQELSVSDNQ-LASLPALPSELC---KLWAYNN-QLT 174

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
             P        L EL +    +  +P+    L+ L   N     N  T++  + +  +  
Sbjct: 175 SLP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYN-----NRLTSLPALPSGLKEL 226

Query: 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
              G    S        V  S    LKEL +    RL SLP +P  L
Sbjct: 227 IVSGNRLTS------LPVLPS---ELKELMVSGN-RLTSLPMLPSGL 263

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 25/167 (14%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
              L +  + +  LP  +   + +  L +    NL SLP        LR L++SG  +L 
Sbjct: 42  NAVLNVGESGLTTLPDCL--PAHITTLVIPDN-NLTSLPALPPE---LRTLEVSGN-QLT 94

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
             P +   + +L       T +  +PS       L  L +    N  T++  +    +  
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFG--NQLTSLPVLPPGLQEL 146

Query: 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
                +  S           +    L +L   +  +L SLP +P  L
Sbjct: 147 SVSDNQLASLP---------ALPSELCKLWAYNN-QLTSLPMLPSGL 183

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 37/167 (22%), Positives = 53/167 (31%), Gaps = 46/167 (27%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           LR L + G  +  LPV    L  L   S     +L +LP  +  L    N       +L 
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT-HLPALPSGLCKLWIFGN-------QLT 134

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
             P        L EL +    +  +P+    L  L   N N   +L              
Sbjct: 135 SLP---VLPPGLQELSVSDNQLASLPALPSELCKLWAYN-NQLTSL-------------- 176

Query: 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
                            +  S    L+EL + D  +L SLP +P  L
Sbjct: 177 ----------------PMLPS---GLQELSVSDN-QLASLPTLPSEL 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 23  LLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82
           L +G   L++ G   L +LP  +     +  L +   + L   P   A   +L  L + G
Sbjct: 38  LNNGNAVLNV-GESGLTTLPDCL--PAHITTLVIPDNN-LTSLP---ALPPELRTLEVSG 90

Query: 83  TSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS 142
             +T +P     L  L + +        T +  + +        G +  S          
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPL-----THLPALPSGLCKLWIFGNQLTSLP-------- 137

Query: 143 ISGLLNLKELELEDCKRLQSLPQIPPNL 170
                 L+EL + D  +L SLP +P  L
Sbjct: 138 -VLPPGLQELSVSDN-QLASLPALPSEL 163

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 29/182 (15%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L +L+    +I  L +S    + L  L+    K L +L +  + L  L  L      KL 
Sbjct: 66  LTKLICTSNNITTLDLSQ--NTNLTYLACDSNK-LTNLDV--TPLTKLTYLNCDTN-KLT 119

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
           K    V+    L  L     ++TE+   +     L  L+ +  K +    +         
Sbjct: 120 KLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDV--------T 167

Query: 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVT 183
                  + CSF+ +  + +S    L  L  +    +  L            N    L  
Sbjct: 168 PQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN-ITKLD----------LNQNIQLTF 216

Query: 184 LS 185
           L 
Sbjct: 217 LD 218

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 19/161 (11%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  L  D  +I +L ++      L  L     K L  + +  + L  L     S    L 
Sbjct: 193 LNRLNCDTNNITKLDLN--QNIQLTFLDCSSNK-LTEIDV--TPLTQLTYFDCSVN-PLT 246

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
           +    V+++  L  L+   T + E+  +      L       C+ +    + +       
Sbjct: 247 ELD--VSTLSKLTTLHCIQTDLLEIDLTH--NTQLIYFQAEGCRKI--KELDV------T 294

Query: 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                  + C    +  + +S    L  L L + + L  L 
Sbjct: 295 HNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD 334

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 27/129 (20%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIA------------------- 44
           L  L    TD+ E+ ++    + L+    +GC+ +  L +                    
Sbjct: 256 LTTLHCIQTDLLEIDLTH--NTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313

Query: 45  ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLN 104
           +S    L  L L+   +L +    V+    L  L      I +  S  ++     L N  
Sbjct: 314 LSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPA---LNNNF 367

Query: 105 NCKNLWTTI 113
             +    T+
Sbjct: 368 EAEGQTITM 376

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 35/163 (21%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           + +L++ G  +  +   IE L+ L  L+L G  N ++    +S+L  L NL +    K+ 
Sbjct: 46  ITKLVVAGEKVASIQ-GIEYLTNLEYLNLNG--NQITDISPLSNLVKLTNLYIGTN-KIT 101

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
               +  ++ +L ELYL+  +I+++   +  L  +  LNL    N   + +         
Sbjct: 102 DISAL-QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA--NHNLSDL--------- 148

Query: 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI 166
                              +S +  L  L + + K ++ +  I
Sbjct: 149 -----------------SPLSNMTGLNYLTVTESK-VKDVTPI 173

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 19/104 (18%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  L L+   I+++   +  L+ L   +     N ++    ++++  L +LK+    K+ 
Sbjct: 179 LYSLSLNYNQIEDIS-PLASLTSLHYFTAY--VNQITDITPVANMTRLNSLKIGNN-KIT 234

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK 107
               + A++  L  L +    I+++  +++ L  L++LN+ + +
Sbjct: 235 DLSPL-ANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ 276

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 19/104 (18%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  L +    I ++  +++ L+ L  L++    N +S    +++L  L +L L+      
Sbjct: 245 LTWLEIGTNQISDIN-AVKDLTKLKMLNVGS--NQISDISVLNNLSQLNSLFLNNNQLGN 301

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK 107
           +  +++  + +L  L+L    IT++   +  L  ++  +  N  
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L+ L +    I ++   +  LS L  L L   +        I  L  L  L LS    + 
Sbjct: 267 LKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HIT 324

Query: 64  KFPQIVASMEDLLELYLDGTSITE 87
               + AS+  +         I +
Sbjct: 325 DIRPL-ASLSKMDSADFANQVIKK 347

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 4   LRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L  L + G D+    +  +  L+ L  L +    +  S+   I++L  + ++ LS    +
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK 107
                +  ++ +L  L +    + +    IE    L  L   +  
Sbjct: 150 TDIMPL-KTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           +++L ++          I  LS L +L + G          +S L  L  L +S  +   
Sbjct: 68  IKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK 107
                + ++  +  + L           ++ L  L+ LN+    
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 18/164 (10%), Positives = 47/164 (28%), Gaps = 55/164 (33%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  + L   ++ +L   IE    +  L++             ++   +  L       L+
Sbjct: 46  LTYITLANINVTDLT-GIEYAHNIKDLTINNIH--------ATNYNPISGLS-----NLE 91

Query: 64  KFPQIVASMEDLLELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARS 122
                         L + G  +T +   ++  L  L LL++++  +       +      
Sbjct: 92  -------------RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH---DDSILTK---- 131

Query: 123 FQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI 166
                               I+ L  +  ++L     +  +  +
Sbjct: 132 --------------------INTLPKVNSIDLSYNGAITDIMPL 155

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 36/161 (22%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L EL L    I  +   +  L+ L  L L    N L     IS+LK L  L L     + 
Sbjct: 267 LTELKLGANQISNIS-PLAGLTALTNLELNE--NQLEDISPISNLKNLTYLTLYFN-NIS 322

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
               + +S+  L  L+     +++V  S+  L  +  L+  +  N  + +          
Sbjct: 323 DISPV-SSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGH--NQISDLT--------- 369

Query: 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                              ++ L  + +L L D     + P
Sbjct: 370 ------------------PLANLTRITQLGLNDQA-WTNAP 391

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 15/163 (9%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           +  L  D   IK +   +E L+ L Q++     N L+    + +L  L ++ ++   ++ 
Sbjct: 48  VTTLQADRLGIKSID-GVEYLNNLTQINFSN--NQLTDITPLKNLTKLVDILMNNN-QIA 103

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
               + A++ +L  L L    IT++   ++ L  L  L L++       I  I A +   
Sbjct: 104 DITPL-ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-----ISDISALS--- 153

Query: 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI 166
                + +S    V     ++ L  L+ L++   K +  +  +
Sbjct: 154 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVL 195

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 34/194 (17%), Positives = 79/194 (40%), Gaps = 21/194 (10%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L ++      + ++   ++ L+ LV + +    N ++    +++L  L  L L    ++ 
Sbjct: 70  LTQINFSNNQLTDIT-PLKNLTKLVDILMNN--NQIADITPLANLTNLTGLTLFNN-QIT 125

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
               +  ++ +L  L L   +I+++  ++  L  L+ L+  N       +  +   A   
Sbjct: 126 DIDPL-KNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ------VTDLKPLA--- 174

Query: 124 QFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCKRLQSLPQIP--PNLWLVRANGC-- 178
                E +  S + V  +S ++ L NL+ L   + + +  +  +    NL  +  NG   
Sbjct: 175 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQL 233

Query: 179 SSLVTLSGALNLRK 192
             + TL+   NL  
Sbjct: 234 KDIGTLASLTNLTD 247

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 18/165 (10%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  L+     I ++   + +L+ L +LSL G  N L     ++SL  L +L L+   ++ 
Sbjct: 201 LESLIATNNQISDIT-PLGILTNLDELSLNG--NQLKDIGTLASLTNLTDLDLANN-QIS 256

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA--R 121
               + + +  L EL L    I+ + S +  L  L  L LN   N    I  I       
Sbjct: 257 NLAPL-SGLTKLTELKLGANQISNI-SPLAGLTALTNLELNE--NQLEDISPISNLKNLT 312

Query: 122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI 166
                       S        +S L  L+ L   + K +  +  +
Sbjct: 313 YLTLYFNNISDIS-------PVSSLTKLQRLFFYNNK-VSDVSSL 349

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 38/195 (19%), Positives = 77/195 (39%), Gaps = 23/195 (11%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  L L    I ++   ++ L+ L +L L    N +S   A+S L  L+ L     +++ 
Sbjct: 114 LTGLTLFNNQITDID-PLKNLTNLNRLELSS--NTISDISALSGLTSLQQLSFG--NQVT 168

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA--R 121
               + A++  L  L +    +++  S +  L  LE L   N  N  + I  +       
Sbjct: 169 DLKPL-ANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATN--NQISDITPLGILTNLD 224

Query: 122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIP--PNLWLVRANGC- 178
               +G +            +++ L NL +L+L + + + +L  +     L  ++     
Sbjct: 225 ELSLNGNQLKDIG-------TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQ 276

Query: 179 -SSLVTLSGALNLRK 192
            S++  L+G   L  
Sbjct: 277 ISNISPLAGLTALTN 291

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 27/196 (13%)

Query: 6   ELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKF 65
             +   T I ++  +   L+  ++  L   K  ++  ++ + L  +  L+      +K  
Sbjct: 6   ATITQDTPINQIF-TDTALAEKMKTVLG--KTNVTDTVSQTDLDQVTTLQADRL-GIKSI 61

Query: 66  PQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQF 125
             +   + +L ++      +T++   ++ L  L  + +NN  N    I  +         
Sbjct: 62  DGV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN--NQIADITPL------ANL 111

Query: 126 DGKEFISCSFDVVFSVS-ISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTL 184
                ++   + +  +  +  L NL  LEL     +  +  +         +G +SL  L
Sbjct: 112 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT-ISDISAL---------SGLTSLQQL 161

Query: 185 SGALNLRKSEYTAVSN 200
           S     + ++   ++N
Sbjct: 162 S--FGNQVTDLKPLAN 175

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  L L   +I ++   +  L+ L +L      N +S   ++++L  +  L      ++ 
Sbjct: 311 LTYLTLYFNNISDIS-PVSSLTKLQRLFFYN--NKVSDVSSLANLTNINWLSAGHN-QIS 366

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNL-NNCKNLWTTIIYI 116
               + A++  + +L L+  + T  P  +     + + N   N          I
Sbjct: 367 DLTPL-ANLTRITQLGLNDQAWTNAP--VNYKANVSIPNTVKNVTGALIAPATI 417

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 44/190 (23%), Positives = 66/190 (34%), Gaps = 22/190 (11%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSK 61
           L+EL L  T + ELP  +  LS L +L L    N       I+ S+   L +L + G +K
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSA--NKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 62  LKK-FPQIVASMEDLLELYLDGTSITEVPSSIELLHG---LELLNLNNCK--NLWTTIIY 115
             +     + ++E+L EL L    I         L     L+ LNL+  +  +L T    
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRA 175
                                  F      L  LK L L        L      L+    
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPF----QNLHLLKVLNLSHSL----LDISSEQLF---- 445

Query: 176 NGCSSLVTLS 185
           +G  +L  L+
Sbjct: 446 DGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 18/189 (9%)

Query: 4   LRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
           L+ L    T I  +  + +     L  L L    ++ S+ +      + L+ L       
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNN-A 164

Query: 62  LKKF-PQIVASMEDL--LELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMA 118
           +     + ++S++    L L L+G  I  +          + LN    +NL   I   + 
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL-LVIFKGLK 223

Query: 119 FARSFQFDGKEFISCSFDVVFSVSISGL--LNLKELELEDCKRLQSLPQIPPNLWLVRAN 176
            +         F     + +      GL  ++++ + L+          I  N +    +
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY----FFNISSNTF----H 275

Query: 177 GCSSLVTLS 185
             S L  L 
Sbjct: 276 CFSGLQELD 284

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 57/190 (30%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAIS--SLKCLRNLKLSGCSK 61
              L L+G DI  +       +    L+  G +NLL +   +   +++ L          
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD- 239

Query: 62  LKKFPQIV---------------------------ASMEDLLELYLDGTSITEVPSSIEL 94
            +     V                                L EL L  T ++E+PS +  
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG 299

Query: 95  LHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELEL 154
           L  L+ L L+  K                           F+ +  +S S   +L  L +
Sbjct: 300 LSTLKKLVLSANK---------------------------FENLCQISASNFPSLTHLSI 332

Query: 155 EDCKRLQSLP 164
           +   +   L 
Sbjct: 333 KGNTKRLELG 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 37/192 (19%), Positives = 55/192 (28%), Gaps = 41/192 (21%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQL---SLKGCKNLLSLPI-AISSLKCLRNLKL 56
           +E LREL L   DI+        L  L  L   +L   +  LSL   A      L  L L
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDL 407

Query: 57  SGCSKLKKFPQIVA--SMEDLLELYLDGTSITEVP-SSIELLHGLELLNLNNCKNLWTTI 113
           +   +LK         ++  L  L L  + +        + L  L+ LNL         I
Sbjct: 408 AFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 114 IYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLV 173
               +                           L  L+ L L  C     L  I  + +  
Sbjct: 467 QKTNSL------------------------QTLGRLEILVLSFCD----LSSIDQHAF-- 496

Query: 174 RANGCSSLVTLS 185
                  +  + 
Sbjct: 497 --TSLKMMNHVD 506

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 5e-09
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 57/200 (28%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
             EL L+  ++  LP ++     +  L +     L+SLP   +SL     L      +L 
Sbjct: 61  FSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLPELPASL---EYLDACDN-RLS 113

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
             P        L  L +D   +T +P    L   LE +N +N +        +       
Sbjct: 114 TLP---ELPASLKHLDVDNNQLTMLPELPAL---LEYINADNNQ--------LTMLPELP 159

Query: 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL-WL-VRAN----- 176
                                   +L+ L + +  +L  LP++P +L  L V  N     
Sbjct: 160 T-----------------------SLEVLSVRNN-QLTFLPELPESLEALDVSTNLLESL 195

Query: 177 -----GCSSLVTLSGALNLR 191
                              R
Sbjct: 196 PAVPVRNHHSEETEIFFRCR 215

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 8e-09
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  +  D   +  LP   EL + L  LS++  + L  LP      + L  L +S    L+
Sbjct: 142 LEYINADNNQLTMLP---ELPTSLEVLSVRNNQ-LTFLP---ELPESLEALDVSTN-LLE 193

Query: 64  KFPQIVASMEDLLE----LYLDGTSITEVPSSIELLHGLELLNLNN 105
             P +        E           IT +P +I  L     + L +
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 10/112 (8%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRN----LKLSGC 59
           L  L +    +  LP   EL   L  L +     L SLP                +    
Sbjct: 162 LEVLSVRNNQLTFLP---ELPESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCREN 217

Query: 60  SKLKKFPQIVASMEDLLELYLDGTSITEVP-SSIELLHGLELLNLNNCKNLW 110
            ++   P+ + S++    + L+   ++     S+         +        
Sbjct: 218 -RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 6/84 (7%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGL----VQLSLKGCKNLLSLPIAISSLKCLRNLKL 56
            E L  L +    ++ LP             +    +  + +  +P  I SL     + L
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIIL 237

Query: 57  SGCSKLKKFPQIVASMEDLLELYL 80
                L    +   S +     Y 
Sbjct: 238 EDN-PLSSRIRESLSQQTAQPDYH 260

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 23/173 (13%), Positives = 51/173 (29%), Gaps = 18/173 (10%)

Query: 4   LRELLLDGTDIKELPVS--IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
           ++ L L   +I  +  +        L  L+L+    +  +         L+ L LS   K
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK-GQVVFAKLKTLDLSSN-K 202

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFAR 121
           L        S   +  + L    +  +  ++     LE  +L    N +        F++
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG--NGFHCGTLRDFFSK 260

Query: 122 SFQF-----------DGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSL 163
           + +             G+    C+   +         +L     +    L+  
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 4   LRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           ++EL L G  + ++    +   + L  L+L    N+L   + + SL  LR L L+    +
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSS--NVLYETLDLESLSTLRTLDLNNN-YV 92

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105
           ++          +  L+    +I+ V  S     G + + L N
Sbjct: 93  QELLV----GPSIETLHAANNNISRVSCSR--GQGKKNIYLAN 129

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-----------PIAISSLKCLR 52
           + E+  +G   K   V+   L   +    +   N+  L              ++    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 53  NLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105
            L LS    L +   +  S+  L  L L+   + E+         +E L+  N
Sbjct: 62  LLNLSSN-VLYETLDL-ESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 15/184 (8%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGC--SK 61
            + L +    +K+ P     L  L  L+L    N  S+     +L  L  L LS    S 
Sbjct: 309 WQSLSIIRCQLKQFP--TLDLPFLKSLTLTM--NKGSISFKKVALPSLSYLDLSRNALSF 364

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFAR 121
                        L  L L       + ++   L  L+ L+  +  +    +    AF  
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH--STLKRVTEFSAFLS 422

Query: 122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSL 181
             +    +    +  + F     GL +L  L++       +      N++       ++L
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN---TLSNVF----ANTTNL 475

Query: 182 VTLS 185
             L 
Sbjct: 476 TFLD 479

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 32/194 (16%), Positives = 60/194 (30%), Gaps = 20/194 (10%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCK-NLLSLPIAISSLKCLRNLKLSGC-- 59
           L  L+   T +  L    I  L  L +L++     +   LP   S+L  L ++ LS    
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 60  SKLKK--FPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIM 117
             +       +  + +  L L +    I  +        G++L  L    N  ++ I   
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA--FQGIKLHELTLRGNFNSSNIMKT 223

Query: 118 AFA-----RSFQFDGKEFISCSFDVVFSVSI-SGLLNLKELELEDCKRLQSLPQIPPNLW 171
                      +    EF       +F  SI  GL ++   E                  
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF-RLTYTNDFSDDIVKF- 281

Query: 172 LVRANGCSSLVTLS 185
               +  +++  +S
Sbjct: 282 ----HCLANVSAMS 291

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 4   LRELLLDGTDIKELPVSIEL--LSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
           L+ L    + +K +        L  L+ L +      +        L  L  LK++G S 
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 62  LKKFPQ-IVASMEDLLELYLDGTSITEVP-SSIELLHGLELLNLNN 105
                  + A+  +L  L L    + ++     + LH L+LLN+++
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 4   LRELLLDGTDIKELPVS--IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
           ++ L L   +I  +  +        L  L+L+    +  +         L+ L LS   K
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK-GQVVFAKLKTLDLSSN-K 202

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTI 113
           L        S   +  + L    +  +  ++     LE  +L    N +   
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG--NGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 18/155 (11%), Positives = 39/155 (25%), Gaps = 6/155 (3%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
            + L  L L    I ++   + + + L  L L     L  +     S   +  + L    
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN- 224

Query: 61  KLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
           KL    + +   ++L    L G                 +  +   + +           
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-QTVKKLTGQNEEEC 283

Query: 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE 155
                       C  + + +     L+ L      
Sbjct: 284 TVPTLGHYGAYCC--EDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           ++EL L G  + ++    +   + L  L+L    N+L   + + SL  LR L L+    +
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSS--NVLYETLDLESLSTLRTLDLNNN-YV 92

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK 107
           ++          +  L+    +I+ V  S     G + + L N K
Sbjct: 93  QELLV----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK 131

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  L L    + E    +E LS L  L L    N +     +     +  L  +    + 
Sbjct: 60  LELLNLSSNVLYETL-DLESLSTLRTLDLNN--NYVQ---ELLVGPSIETLHAANN-NIS 112

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNN 105
           +     +  +    +YL    IT +          ++ L+L  
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-----------PIAISSLKCLR 52
           + E+  +G   K   V+   L   +    +   N+  L              ++    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 53  NLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105
            L LS    L +   +  S+  L  L L+   + E+         +E L+  N
Sbjct: 62  LLNLSSN-VLYETLDL-ESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLL-SLPIAISSLKCLRNLKLSGCSK 61
           L E+ L   +++++       +  L +L +    N L +L +    +  L+ L LS    
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISN--NRLVALNLYGQPIPTLKVLDLSHN-H 306

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105
           L    +     + L  LYLD  SI  +  S    H L+ L L++
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKL 62
           L  L L   ++ +    +    GLV++ L   + L  +       ++ L  L +S  ++L
Sbjct: 228 LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRL 284

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTI 113
                    +  L  L L    +  V  +      LE L L++  N   T+
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH--NSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/194 (14%), Positives = 72/194 (37%), Gaps = 36/194 (18%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSK 61
            + +    + +++LP ++ +    +  L+L   + +  +   A +    ++ L +     
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-A 104

Query: 62  LKKFP-QIVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMAF 119
           ++  P  +  ++  L  L L+   ++ +P  I      L  L+++N  N    I      
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN--NNLERIE----- 157

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP-QIPPNLWLVRANGC 178
             +FQ                       +L+ L+L    RL  +   + P+L+    +  
Sbjct: 158 DDTFQ--------------------ATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYN 196

Query: 179 SSLVTLSGALNLRK 192
             L TL+  + + +
Sbjct: 197 -LLSTLAIPIAVEE 209

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 22/165 (13%), Positives = 58/165 (35%), Gaps = 18/165 (10%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPIAI-SSLKCLRNLKLSGCSK 61
           +  L L+   I+E+          + +L +     +  LP  +  ++  L  L L     
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-D 128

Query: 62  LKKFP-QIVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMAF 119
           L   P  I  +   L  L +   ++  +     +    L+ L L++ +        +   
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--------LTHV 180

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
             S         + S++++   +++  + ++EL+      +  + 
Sbjct: 181 DLS-LIPSLFHANVSYNLL--STLAIPIAVEELDASHN-SINVVR 221

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 11/103 (10%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L  L +   +++ +     +  + L  L L     L  + +  S +  L +  +S    L
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL--SLIPSLFHANVSYN-LL 198

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105
                 +A    + EL     SI  V     +   L +L L +
Sbjct: 199 STLAIPIA----VEELDASHNSINVVRG--PVNVELTILKLQH 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 38/214 (17%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGC---- 59
           + E +   T IK++    +  +  ++ +LK  K  ++  +  + L  +  +  +      
Sbjct: 1   MGETITVSTPIKQIF-PDDAFAETIKDNLK--KKSVTDAVTQNELNSIDQIIANNSDIKS 57

Query: 60  -SKLKKFPQI---------------VASMEDLLELYLDGTSITEVPSSIELLHGLELLNL 103
              ++  P +               + ++++L  L+LD   I ++ SS++ L  L+ L+L
Sbjct: 58  VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSL 116

Query: 104 NNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCKRLQS 162
            +       I  I            E +    + +  ++ +S L  L  L LED + +  
Sbjct: 117 EHNG-----ISDINGLV---HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISD 167

Query: 163 LPQIPPNLWL----VRANGCSSLVTLSGALNLRK 192
           +  +     L    +  N  S L  L+G  NL  
Sbjct: 168 IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 201

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L E+ L   +++++       +  L +L +   + L++L +    +  L+ L LS    L
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HL 313

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105
               +     + L  LYLD  SI  +  S    H L+ L L++
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKL 62
           L  L L   ++ +    +    GLV++ L   + L  +       ++ L  L +S  ++L
Sbjct: 234 LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRL 290

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK 107
                    +  L  L L    +  V  +      LE L L++  
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 28/194 (14%), Positives = 72/194 (37%), Gaps = 36/194 (18%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSK 61
            + +    + +++LP ++ +    +  L+L   + +  +   A +    ++ L +     
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-A 110

Query: 62  LKKFP-QIVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMAF 119
           ++  P  +  ++  L  L L+   ++ +P  I      L  L+++N       +  I   
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-----LERIE-- 163

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP-QIPPNLWLVRANGC 178
             +FQ                       +L+ L+L    RL  +   + P+L+    +  
Sbjct: 164 DDTFQ--------------------ATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYN 202

Query: 179 SSLVTLSGALNLRK 192
             L TL+  + + +
Sbjct: 203 -LLSTLAIPIAVEE 215

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 26/183 (14%), Positives = 50/183 (27%), Gaps = 48/183 (26%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L  L +   +++ +     +  + L  L L     L  + +  S +  L +  +S    L
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL--SLIPSLFHANVSYN-LL 204

Query: 63  KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARS 122
                 +A    + EL     SI  V     +   L +L L +       +         
Sbjct: 205 STLAIPIA----VEELDASHNSINVVRG--PVNVELTILKLQHNN-----LTDTAWL--- 250

Query: 123 FQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLV 182
                                     L E++L   +    L +I  + +         L 
Sbjct: 251 ---------------------LNYPGLVEVDLSYNE----LEKIMYHPF----VKMQRLE 281

Query: 183 TLS 185
            L 
Sbjct: 282 RLY 284

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 22/166 (13%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCS 60
           +  L L+   I+E+          + +L +    N +    P    ++  L  L L    
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF--NAIRYLPPHVFQNVPLLTVLVLERN- 133

Query: 61  KLKKFP-QIVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMA 118
            L   P  I  +   L  L +   ++  +     +    L+ L L++ +        +  
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--------LTH 185

Query: 119 FARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
              S         + S++++   +++  + ++EL+      +  + 
Sbjct: 186 VDLS-LIPSLFHANVSYNLL--STLAIPIAVEELDASHN-SINVVR 227

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 76/497 (15%), Positives = 136/497 (27%), Gaps = 206/497 (41%)

Query: 9   LDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRN-LKLSGCSKLKKFPQ 67
            D  D++++P SI        LS +   +++    A+S    L   L       ++KF  
Sbjct: 33  FDCKDVQDMPKSI--------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-- 82

Query: 68  IVASMEDLLE------------------------------LYLDGTSITEVP-SSIELLH 96
               +E++L                               LY D     +   S ++   
Sbjct: 83  ----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 97  GLE--LLNLNNCKNLWTTIIYIMA----------FARSF----QFDGKEF---------- 130
            L   LL L   KN+   +I  +              S+    + D K F          
Sbjct: 139 KLRQALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 131 -------------ISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL------- 170
                        I  ++      S +  L +  ++ E  +RL         L       
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQ 254

Query: 171 --WLVRA--NGCSSLVT-----------------------------------LSGALNLR 191
                 A    C  L+T                                   L   L+ R
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 192 KSE--YTAVS-NPSHKLSIVVPGSEIPK-------WFMYQNE------GSSITVTRPSYF 235
             +     ++ NP   LSI+     I         W     +       SS+ V  P+ +
Sbjct: 315 PQDLPREVLTTNPRR-LSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 236 YNMNKVVGYAICCVF----HVPKHSIGIKIWRSYATYQLECSMDG------------SGT 279
             M     +    VF    H+P   + + IW       +   ++               T
Sbjct: 372 RKM-----FDRLSVFPPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 280 IS----YIDFREIFGHCGSDHLWLL--YLSRQRCYDTN------------WHF------- 314
           IS    Y++ +    +  + H  ++  Y +  + +D++             H        
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 315 ----ESNHFRLSFIDFR 327
                   FR+ F+DFR
Sbjct: 485 EHPERMTLFRMVFLDFR 501

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSK 61
           L  + +  T+I  +P    L   L +L L G  N ++     ++  L  L  L LS    
Sbjct: 173 LSYIRIADTNITTIPQG--LPPSLTELHLDG--NKITKVDAASLKGLNNLAKLGLSFN-S 227

Query: 62  LKKFPQ-IVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
           +       +A+   L EL+L+   + +VP  +     ++++ L+N  N  +  I    F 
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN--NNISA-IGSNDFC 284

Query: 121 RSFQFDGK---EFISCSFDVVFSVSIS-----GLLNLKELELED 156
                  K     +S   + V    I       +     ++L +
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 36/172 (20%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCS 60
              L L    I E+     + L  L  L L    N +S   P A + L  L  L LS  +
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILIN--NKISKISPGAFAPLVKLERLYLSK-N 110

Query: 61  KLKKFPQIVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMAF 119
           +LK+ P+ +     L EL +    IT+V  S+   L+ + ++ L     L ++ I   AF
Sbjct: 111 QLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAF 167

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQ-IPPNL 170
                                    G+  L  + + D   + ++PQ +PP+L
Sbjct: 168 ------------------------QGMKKLSYIRIADT-NITTIPQGLPPSL 194

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 10/113 (8%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSK 61
           L  L +    +  +P   +L   L +L L    N +       +     L  L L    +
Sbjct: 174 LNYLRISEAKLTGIPK--DLPETLNELHLDH--NKIQAIELEDLLRYSKLYRLGLGHN-Q 228

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTI 113
           ++       + +  L EL+LD   ++ VP+ +  L  L+++ L+   N  T +
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT--NNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCS 60
           L EL LD   I+ + +  +   S L +L L    N + +    ++S L  LR L L    
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGH--NQIRMIENGSLSFLPTLRELHLDNN- 251

Query: 61  KLKKFPQIVASMEDLLELYLDGTSITEVPSSI-------ELLHGLELLNLNN 105
           KL + P  +  ++ L  +YL   +IT+V  +                ++L N
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 23/177 (12%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCK---NLLSLPIAISSLKCLRNLKLSGC 59
           ++ + ++ + +  +P S  + L  L  L L         L       +   L+ L LS  
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 60  --SKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK--NLWTTIIY 115
               ++K  +I+ ++++L  L +   +   +P S +    +  LNL++     + T I  
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-- 429

Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI--PPNL 170
                        E +  S + + S S   L  L+EL +    +L++LP     P L
Sbjct: 430 ---------PQTLEVLDVSNNNLDSFS-LFLPRLQELYISRN-KLKTLPDASLFPVL 475

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 10/168 (5%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
           ++ L L    I  +    +   + L  L LK  + + ++   A  SL  L +L LS    
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN-H 85

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPSSIEL--LHGLELLNLNNCKNLWTTIIYIMA 118
           L          +  L  L L G     +  +     L  L+ L + N +    + I  + 
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF--SEIRRID 143

Query: 119 FARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI 166
           FA     +  E  + S     S S+  + ++  L L        L +I
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEI 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           +R L L  T I+ +     +   L  L +    NL S       L  L+ L +S   KLK
Sbjct: 412 MRFLNLSSTGIRVVKT--CIPQTLEVLDVSNN-NLDSFS---LFLPRLQELYISRN-KLK 464

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNN 105
             P   +    LL + +    +  VP  I + L  L+ + L+ 
Sbjct: 465 TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 29/199 (14%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L EL +    ++     S++ +  +  L+L   ++   L I    L  +R L+L   + L
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-L 208

Query: 63  KKFPQIVASMEDLLE---------LYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTI 113
            +F      ++++             L   S  E+   +  +  L  +  ++C       
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 114 IYI--------MAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQ 165
                      +    +                 S   S L  +K + +E+ K    +  
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK----VFL 324

Query: 166 IPPNLWLVRANGCSSLVTL 184
           +P +          SL  L
Sbjct: 325 VPCSFS----QHLKSLEFL 339

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 15/156 (9%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           + EL L G  +K +  +I  L  +  L L      ++    ++ L  L+ L L    ++ 
Sbjct: 87  ITELELSGNPLKNVS-AIAGLQSIKTLDL--TSTQITDVTPLAGLSNLQVLYLDLN-QIT 142

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
               + A + +L  L +    ++++ + +  L  L  L  ++ K     I  I   A   
Sbjct: 143 NISPL-AGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNK-----ISDISPLA--- 192

Query: 124 QFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCK 158
                  +    + +  VS ++   NL  + L +  
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 15/156 (9%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L  L L    I +L   ++ L+ + +L L G  N L    AI+ L+ ++ L L+   ++ 
Sbjct: 65  LIGLELKDNQITDLA-PLKNLTKITELELSG--NPLKNVSAIAGLQSIKTLDLTST-QIT 120

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
               + A + +L  LYLD   IT + S +  L  L+ L++ N +     +  +   A   
Sbjct: 121 DVTPL-AGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQ-----VSDLTPLA--- 170

Query: 124 QFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCK 158
                  +    + +  +S ++ L NL E+ L++ +
Sbjct: 171 NLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L+ L +    + +L   +  LS L  L      N +S    ++SL  L  + L    ++ 
Sbjct: 153 LQYLSIGNAQVSDLT-PLANLSKLTTLKADD--NKISDISPLASLPNLIEVHLKNN-QIS 208

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTII 114
               + A+  +L  + L   +IT    +  + +   L+  N  K      I
Sbjct: 209 DVSPL-ANTSNLFIVTLTNQTIT----NQPVFYNNNLVVPNVVKGPSGAPI 254

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 11/171 (6%)

Query: 4   LRELLLDGTDIKELPVSI--ELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCS 60
           L  L L G   K L  +     L+ L  L +        +     + L  L  L++    
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS- 184

Query: 61  KLKKFPQIV-ASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNL--NNCKNLWTTIIYI 116
            L+ +      S++++  L L       +     ++   +E L L   +      + +  
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 117 MAFARSFQFDGKEFISCSFDVVFSVS--ISGLLNLKELELEDCKRLQSLPQ 165
                  +      +  + + +F V   ++ +  L ELE     +L+S+P 
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD 294

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 1e-06
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
              +R L L   D+  L   +E L  +  L L   + L +LP A+++L+CL  L+ S   
Sbjct: 440 YADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN- 496

Query: 61  KLKKFPQIVASMEDLLELYLDGTSITEVPSSIEL--LHGLELLNLNN 105
            L+    + A++  L EL L    + +  +   L     L LLNL  
Sbjct: 497 ALENVDGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           +  L L    ++ LP ++  L  L  L       L ++   +++L  L+ L L    +L+
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN-RLQ 521

Query: 64  KFPQI--VASMEDLLELYLDGTSITEVPSS----IELLHGLELL 101
           +   I  + S   L+ L L G S+ +         E+L  +  +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 27/191 (14%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSK 61
           LR L L    +K +P+ +   LS L +L +   K ++ L       L  L++L++     
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN-D 139

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNCKNLWTTIIYIMAF 119
           L        + +  L +L L+  ++T +P+ ++  LHGL +L L +        I   +F
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN---INAIRDYSF 196

Query: 120 A-----RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVR 174
                 +  +     ++               LNL  L +  C     L  +P       
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLY-----GLNLTSLSITHCN----LTAVPYLAV--- 244

Query: 175 ANGCSSLVTLS 185
                 L  L+
Sbjct: 245 -RHLVYLRFLN 254

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 32/164 (19%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
           L +L L+  ++  +P  ++  L GL+ L L+   N+ ++   +   L  L+ L++S    
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
           L           +L  L +   ++T VP  ++  L  L  LNL+   N  +TI       
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY--NPISTI-----EG 265

Query: 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                                    LL L+E++L   + L  + 
Sbjct: 266 SML--------------------HELLRLQEIQLVGGQ-LAVVE 288

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 28/134 (20%)

Query: 1   MECLRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGC 59
           +  L  L L   +I  +     + L  L  L +     L ++         L +L ++ C
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 60  SKLKKFP-QIVASMEDLLELYLDGTSITEVPSSI--------EL---------------- 94
             L   P   V  +  L  L L    I+ +  S+        E+                
Sbjct: 235 -NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 95  -LHGLELLNLNNCK 107
            L+ L +LN++  +
Sbjct: 294 GLNYLRVLNVSGNQ 307

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLP--IAISSLKCLRNLKLSGCSK 61
           L+ L L    +  +  +   L  L  L  +    L  +       SL+ L  L +S    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-H 432

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEV--PSSIELLHGLELLNLNNCK 107
            +     +   +  L  L + G S  E   P     L  L  L+L+ C+
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 27/166 (16%), Positives = 42/166 (25%), Gaps = 33/166 (19%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGC- 59
               + L L      + P     L  L +L+     N      +   L  L  L LS   
Sbjct: 303 NFGWQHLELVNCKFGQFP--TLKLKSLKRLTFTS--NKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 60  -SKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMA 118
            S      Q       L  L L    +  + S+   L  LE L+  +  +    +     
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH--SNLKQMSEFSV 416

Query: 119 FARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
           F                          L NL  L++      +   
Sbjct: 417 F------------------------LSLRNLIYLDISHT-HTRVAF 437

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCK-NLLSLPIAISSLKCLRNLKLSGCSK 61
           L  L +  T  +     I   LS L  L + G       LP   + L+ L  L LS C +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-Q 481

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNN 105
           L++       S+  L  L +    +  VP  I + L  L+ + L+ 
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
           L+ L L   +I+ +   + + LS L  L L G   + SL + A S L  L+ L       
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-N 111

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEV--PSSIELLHGLELLNLNNCKNLWTTI 113
           L          ++ L EL +    I     P     L  LE L+L++  N   +I
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS--NKIQSI 164

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 33/167 (19%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQL-SLKGCKN-LLSLPIAISSLKCLRNLKLSGCSK 61
           L +L L    +       +   G   L  L    N ++++      L+ L +L       
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-N 112

Query: 62  LKKFPQIVA--SMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMA 118
           LK+  +     S+ +L+ L +  T      + I   L  LE+L +    N +        
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG--NSFQENFLPDI 170

Query: 119 FARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQ 165
           F                        + L NL  L+L  C +L+ L  
Sbjct: 171 F------------------------TELRNLTFLDLSQC-QLEQLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQL---SLKGCKNLLSLPIAI-SSLKCLRNLKLSGC 59
           L  L    +++K++     +   L  L    +    +       I + L  L  LK++G 
Sbjct: 103 LEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 60  SKLKKFPQIV-ASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCK 107
           S  + F   +   + +L  L L    + ++  +    L  L++LN+++  
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 44/189 (23%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSL----PIAISSLKCLRNLKLSG 58
              L L+   ++ LP  + + L+ L +LSL    N LS       +      L+ L LS 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSS--NGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 59  CSKLKKFPQIVASMEDLLELYLDGTSITEVPSS--IELLHGLELLNLNNCKNLWTTIIYI 116
              +         +E L  L    +++ ++        L  L  L++++     T + + 
Sbjct: 88  N-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---TRVAFN 143

Query: 117 MAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRAN 176
             F                         GL +L+ L++      ++     P+++     
Sbjct: 144 GIFN------------------------GLSSLEVLKMAGNSFQEN---FLPDIF----T 172

Query: 177 GCSSLVTLS 185
              +L  L 
Sbjct: 173 ELRNLTFLD 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 33/164 (20%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPIAI-SSLKCLRNLKLSGCSK 61
           L  L L    +  +P    E LS L +L L+    + S+P    + +  L  L L    K
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKK 183

Query: 62  LKKFP-QIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
           L+         + +L  L L   +I ++P ++  L GLE L ++           I   +
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-----FPEIRPGS 237

Query: 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                                   GL +LK+L + +  ++  + 
Sbjct: 238 ----------------------FHGLSSLKKLWVMNS-QVSLIE 258

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 4   LRELLLDGT-DIKELPVSI-ELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
           L  L L     ++ +     E L  L  L+L  C N+  +P  ++ L  L  L++SG + 
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSG-NH 229

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNN 105
             +        +  L +L++  + ++ +   + + L  L  LNL +
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 43/186 (23%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSK 61
             +++     + E+P  I   S    L+L    N + +        L  L  L+L     
Sbjct: 56  FSKVVCTRRGLSEVPQGI--PSNTRYLNLME--NNIQMIQADTFRHLHHLEVLQLGRN-S 110

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMAF 119
           +++        +  L  L L    +T +PS   E L  L  L L N        I   AF
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP---IESIPSYAF 167

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCS 179
                                   + + +L  L+L + K+L+    I    +     G  
Sbjct: 168 ------------------------NRVPSLMRLDLGELKKLEY---ISEGAF----EGLF 196

Query: 180 SLVTLS 185
           +L  L+
Sbjct: 197 NLKYLN 202

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 24/199 (12%), Positives = 62/199 (31%), Gaps = 28/199 (14%)

Query: 3   CLRELLLDG---TDIKELPVSIELLSGLVQLSLKGCKNL--LSLPIAISSLKCLRNLKLS 57
            L+ +       +D+    ++      L  L L  C       L   ++  + ++ L + 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 58  GCSKLKKFPQIVASMED----LLELYLDGTSITEV-PSSIELL----HGLELLNLNNCKN 108
             S  +K  + +  +      L  L    T   ++ P  +E +      L  + + + + 
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232

Query: 109 LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL--QSLPQI 166
           L   ++     A + +       S + D+        L+  ++L       +    +P +
Sbjct: 233 L--ELVGFFKAAANLEEFCG--GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288

Query: 167 PPNLWLVRANGCSSLVTLS 185
                       + +  L 
Sbjct: 289 --------FPFAAQIRKLD 299

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 15/195 (7%)

Query: 3   CLRELLLDGTDIKEL-PVSIELL----SGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLS 57
            L  L    T+  ++ P  +E +      LV + +   + L  L     +   L      
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGG 251

Query: 58  GCSKLKKFPQIVASMEDLLELYLDGTSI---TEVPSSIELLHGLELLNLNNCKNLWTTII 114
             ++    P+   ++    +L   G S     E+P        +  L+L           
Sbjct: 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC 311

Query: 115 YIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVR 174
            ++    + +    E  +   D    V       LK L +E     Q +      +    
Sbjct: 312 TLIQKCPNLEVL--ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369

Query: 175 ----ANGCSSLVTLS 185
               A GC  L  ++
Sbjct: 370 LIALAQGCQELEYMA 384

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 25/211 (11%), Positives = 66/211 (31%), Gaps = 40/211 (18%)

Query: 4   LRELLLDGTDI--KELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
           +R+L L    +  ++    I+    L  L  +       L +     K L+ L++   + 
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354

Query: 62  LKKFPQIVASMED------------LLELYLDGTSIT-----EVPSSIELLHGLELLNLN 104
            +        +              L  + +  + IT      + + ++ L    L+ L+
Sbjct: 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414

Query: 105 NCKNLWTTIIY--IMAFARSFQ-------FDGKEFISCSFDVVFSVSISGLLNLKELELE 155
             + +    +   + +     +       +  +  ++   D+  S       N++ + L 
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT---DLGLSYIGQYSPNVRWMLLG 471

Query: 156 DCKRL-QSLPQIPPNLWLVRANGCSSLVTLS 185
                 + L +         + GC +L  L 
Sbjct: 472 YVGESDEGLMEF--------SRGCPNLQKLE 494

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 44/187 (23%)

Query: 4   LRELLLDGTDI-KELPVSIEL---LSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGC 59
           L  L L    I     V   L      L  L++ G K  +S  + +S    L  L +S  
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK--ISGDVDVSRCVNLEFLDVSSN 210

Query: 60  SKLKKFPQIVASMEDLLELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNLWTTIIYIMA 118
           +     P +      L  L + G  ++ +   +I     L+LLN+++             
Sbjct: 211 NFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN------------ 257

Query: 119 FARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGC 178
                QF G             +    L +L+ L L + K      +IP  L    +  C
Sbjct: 258 -----QFVG------------PIPPLPLKSLQYLSLAENK-FTG--EIPDFL----SGAC 293

Query: 179 SSLVTLS 185
            +L  L 
Sbjct: 294 DTLTGLD 300

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 40/186 (21%)

Query: 4   LRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L+ L + G  +  +   +I   + L  L++    N    PI    LK L+ L L+   K 
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISS--NQFVGPIPPLPLKSLQYLSLAEN-KF 281

Query: 63  K-KFPQ-IVASMEDLLELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNLWTTIIYIMAF 119
             + P  +  + + L  L L G      VP        LE L L++              
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN------------- 328

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCS 179
                F G          +   ++  +  LK L+L   +      ++P +L     N  +
Sbjct: 329 ----NFSG---------ELPMDTLLKMRGLKVLDLSFNE-FSG--ELPESLT----NLSA 368

Query: 180 SLVTLS 185
           SL+TL 
Sbjct: 369 SLLTLD 374

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 21/171 (12%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
           L  L L    +  +P      LS L +L L+    + S+P  A + +  LR L L    +
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKR 172

Query: 62  LKKFP-QIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
           L          + +L  L L   ++ E+P ++  L  L+ L+L+   N  + I       
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSG--NHLSAI------- 222

Query: 121 RSFQFDGKEFI------SCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQ 165
           R   F G   +           V+   +   L +L E+ L     L  LP 
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 33/165 (20%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
            R L L    I+ + V+  + L  L  L L     + ++ I A + L  L  L+L    +
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-R 123

Query: 62  LKKFP-QIVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMAF 119
           L   P      +  L EL+L    I  +PS     +  L  L+L   K L  + I   AF
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL--SYISEGAF 181

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                                    GL NL+ L L  C  L+ +P
Sbjct: 182 E------------------------GLSNLRYLNLAMC-NLREIP 201

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 36/165 (21%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSK 61
             +++    +++E+P  I   +    L+L    N + +    +   L+ L  L+LS    
Sbjct: 45  FSKVICVRKNLREVPDGI--STNTRLLNLHE--NQIQIIKVNSFKHLRHLEILQLSRN-H 99

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMAF 119
           ++         + +L  L L    +T +P+     L  L+ L L N        I   AF
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP---IESIPSYAF 156

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                                   + + +L+ L+L + KRL  + 
Sbjct: 157 ------------------------NRIPSLRRLDLGELKRLSYIS 177

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           L EL ++   +K L   I     L +L L    N L    ++  LK L  L +    KLK
Sbjct: 87  LEELSVNRNRLKNLN-GIPSAC-LSRLFL--DNNELRDTDSLIHLKNLEILSIRNN-KLK 141

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK 107
               +   +  L  L L G  IT     +  L  +  ++L   K
Sbjct: 142 SIVML-GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 36/190 (18%)

Query: 4   LRELLLDGTDI--KELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK 61
           ++ + L  + I    L   +   S L  LSL+G +    +   ++    L  L LSGCS 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 62  L--KKFPQIVASMEDLLELYLDGTS-ITEVPSSIELLHG---LELLNLNNCKNLWTTIIY 115
                   +++S   L EL L      TE    + + H    +  LNL+  +        
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ---- 210

Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL--QSLPQI--PPNLW 171
                                   S  +    NL  L+L D   L      +      L 
Sbjct: 211 --------------------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250

Query: 172 LVRANGCSSL 181
            +  + C  +
Sbjct: 251 HLSLSRCYDI 260

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 18/195 (9%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNL--LSLPIAISSLKCLRNLKLSGCS 60
           L+ L L+G  + +  V ++   S LV+L+L GC      +L   +SS   L  L LS C 
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179

Query: 61  KL--KKFPQIVAS-MEDLLELYLDG--TSITE--VPSSIELLHGLELLNLNNCKNLWTTI 113
               K     VA   E + +L L G   ++ +  + + +     L  L+L++   L    
Sbjct: 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 239

Query: 114 IYIMAFA---RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNL 170
                     +         I           +  +  LK L++       +L  +   L
Sbjct: 240 FQEFFQLNYLQHLSLSRCYDII---PETLL-ELGEIPTLKTLQVFGIVPDGTLQLLKEAL 295

Query: 171 WLVRANGCSSLVTLS 185
             ++ N CS   T++
Sbjct: 296 PHLQIN-CSHFTTIA 309

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 27/185 (14%)

Query: 4   LRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L    L+  +I+ L   S+  L  +  L+LK   +     I+++SL  + +        L
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR--SFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 63  KKFPQIVASMEDLLELYLDGTSITEV-PSSIELLHGLELLNLNNCKNLWTTIIYIMAFAR 121
           +              L ++   I  +  +    L  L+ L+L+N        +    F  
Sbjct: 332 E-------------HLNMEDNDIPGIKSNMFTGLINLKYLSLSNS-FTSLRTLTNETFVS 377

Query: 122 SFQFDGKE--FISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCS 179
                             + S + S L +L+ L+L   +  Q    +    W     G  
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE---LTGQEW----RGLE 430

Query: 180 SLVTL 184
           ++  +
Sbjct: 431 NIFEI 435

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 28/197 (14%)

Query: 4   LRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLK---LSGC 59
           L  L L    I ++   +   L  L  L L    N +   +     + L N+    LS  
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGL--NEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 60  SKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHG---LELLNLNNCKNLWTTIIYI 116
             L+      A +  L  L L   ++  V SS         L +L+L+N       I   
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN--IANIND- 497

Query: 117 MAFA-----RSFQFDG---KEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPP 168
                                    +        + GL +L  L LE         +IP 
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG----FDEIPV 553

Query: 169 NLWLVRANGCSSLVTLS 185
            ++         L  + 
Sbjct: 554 EVF----KDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 29/199 (14%)

Query: 4   LRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAIS---SLKCLRNLKLSGC 59
           L++L L    IKE  P     +  L  L L   +   SL   +    +   +RNL LS  
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 60  SKLKKFPQIV-ASMED--LLELYLDGTSITEV-PSSIELLHGLELLNLNNCKNLWTTIIY 115
             L          ++   L  L L   ++  V   S   L  LE   L    N+    ++
Sbjct: 233 Q-LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NI--QHLF 288

Query: 116 IMAFARSFQ---------FDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI 166
             +    F          F  +     S   +   S   L  L+ L +ED      +P I
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND----IPGI 344

Query: 167 PPNLWLVRANGCSSLVTLS 185
             N++     G  +L  LS
Sbjct: 345 KSNMF----TGLINLKYLS 359

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 40/188 (21%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSK 61
           L+ L L   ++ +L   +    + L +L L    ++  +        K L  L LS    
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN-G 132

Query: 62  LKKF-PQIVASMEDLLELYLDGTSITEVPS---SIELLHGLELLNLNNCKNLWTTIIYIM 117
           L          +E+L EL L    I  + S    I     L+ L L++  N         
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS--NQIKEFS--- 187

Query: 118 AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANG 177
                                       +  L  L L + +   SL +            
Sbjct: 188 ----------------------PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-----A 220

Query: 178 CSSLVTLS 185
            +S+  LS
Sbjct: 221 NTSIRNLS 228

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 4   LRELLLDG---TDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGC 59
           L+ L+L      ++   P   + L  L  L L    N+ ++    +  L+ L  L L   
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN 514

Query: 60  --------SKLKKFPQIVASMEDLLELYLDGTSITEV-PSSIELLHGLELLNLNN 105
                   +        +  +  L  L L+     E+     + L  L++++L  
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 15/170 (8%)

Query: 4   LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
            + L L  T ++ +P  +   L  + ++ +     L  L   +  +L  + ++++     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFA 120
           L          +  L  L +  T +   P   ++        L    N + T I + AF 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152

Query: 121 ------RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                  + +     F S      F+        L  + L   K L  + 
Sbjct: 153 GLCNETLTLKLYNNGFTSVQ-GYAFN-----GTKLDAVYLNKNKYLTVID 196

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 15/168 (8%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
           + +L L+G  + ++   +  L  L  L L   +N +    ++  LK L++L L     + 
Sbjct: 70  VTKLFLNGNKLTDIK-PLANLKNLGWLFL--DENKVKDLSSLKDLKKLKSLSLEHN-GIS 125

Query: 64  KFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123
               +   +  L  LYL    IT++ + +  L  L+ L+L + +     I  I+  A   
Sbjct: 126 DINGL-VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-----ISDIVPLAGLT 178

Query: 124 QFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCKRLQSLPQIPPNL 170
           +    + +  S + +  +  ++GL NL  LEL   + L        NL
Sbjct: 179 KL---QNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNL 223

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 43/213 (20%), Positives = 86/213 (40%), Gaps = 40/213 (18%)

Query: 6   ELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGC-----S 60
           E +   T IK++  S +  +  ++ +LK  K  ++  +  + L  +  +  +        
Sbjct: 6   ETITVPTPIKQIF-SDDAFAETIKDNLK--KKSVTDAVTQNELNSIDQIIANNSDIKSVQ 62

Query: 61  KLKKFPQI---------------VASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105
            ++  P +               +A++++L  L+LD   + ++ SS++ L  L+ L+L +
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEH 121

Query: 106 CKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCK-----R 159
                  I  I            E +    + +  ++ +S L  L  L LED +      
Sbjct: 122 NG-----ISDINGLV---HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 173

Query: 160 LQSLPQIPPNLWLVRANGCSSLVTLSGALNLRK 192
           L  L ++  NL+L   N  S L  L+G  NL  
Sbjct: 174 LAGLTKL-QNLYL-SKNHISDLRALAGLKNLDV 204

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 28/199 (14%)

Query: 24  LSGLVQLSLKGCK-NLLSLPIAISSLKCLRNLKLSGCSKL--KKFPQIVASMEDLLELYL 80
            + L ++ LK        L +   S K  + L LS C          I A+  +L EL L
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 81  DGTSITEVPSSI-----ELLHGLELLNLNNCKNLWT--TIIYIMAFARSFQFDGKEFISC 133
             + + +V         +    L  LN++   +  +   +  ++    + +         
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK--------- 214

Query: 134 SFDVVFSVSISGLL-------NLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSG 186
           S  +  +V +  L         L+EL                +   V  +GC  L  LSG
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY--SGLSVALSGCKELRCLSG 272

Query: 187 ALNLRKSEYTAVSNPSHKL 205
             +   +   AV +   +L
Sbjct: 273 FWDAVPAYLPAVYSVCSRL 291

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 26/170 (15%), Positives = 49/170 (28%), Gaps = 17/170 (10%)

Query: 4   LRELLLDGTDIKELPVSIELLS----GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGC 59
           L  L +     +    ++E L      L  L L     L  L   +     L  L   G 
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 60  SK------LKKFPQIVASMEDLLEL-YLDGTSITEVPSSIELLHGLELLNLNNCKNLWTT 112
           +              ++  ++L  L          +P+   +   L  LNL+        
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

Query: 113 IIYIMAFARSFQFDGKEFISCSF--DVVFSVSISGLLNLKELELEDCKRL 160
           ++ ++      Q          +  D    V  S   +L+EL +   +  
Sbjct: 306 LVKLLCQCPKLQ----RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPF 351

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 15/112 (13%)

Query: 4   LRELLLDGTDI---KELPVSIELLSGLVQLSLKGCKNLL-SLPIAISSLKCLRNL----- 54
           +  L L G ++     +P S+  L  L  L + G  NL+  +P AI+ L  L  L     
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 55  KLSGCSKLKKFPQIVASMEDLLELYLDGTSIT-EVPSSIELLHGLELLNLNN 105
            +SG       P  ++ ++ L+ L     +++  +P SI  L  L  +  + 
Sbjct: 112 NVSG-----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 27  LVQLSLKGCKNLLSLPI--AISSLKCLRNLKLSGCSKLK-KFPQIVASMEDLLELYLDGT 83
           +  L L G       PI  ++++L  L  L + G + L    P  +A +  L  LY+  T
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 84  SIT-EVPSSIELLHGLELLNLNNCK 107
           +++  +P  +  +  L  L+ +   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNA 136

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 23/188 (12%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSG--CSK 61
            + L L      + P     L  L +L+     N      +   L  L  L LS    S 
Sbjct: 306 WQHLELVNCKFGQFPTLK--LKSLKRLTF--TSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 62  LKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFAR 121
                Q       L  L L    +  + S+   L  LE L+  +  +    +     F  
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH--SNLKQMSEFSVFLS 419

Query: 122 S---FQFDGKEFIS-CSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANG 177
                  D    IS     V F+   +GL +L+ L++      ++     P+++      
Sbjct: 420 LRNLIYLD----ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---FLPDIF----TE 468

Query: 178 CSSLVTLS 185
             +L  L 
Sbjct: 469 LRNLTFLD 476

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 27/129 (20%)

Query: 4   LRELLLDGTDIKELPVSIELLSGLVQLSL--------------KGCKNLLSL-------- 41
           L+ L L    +  +  +   L  L  L                   +NL+ L        
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 42  ---PIAISSLKCLRNLKLSGCSKLKKF-PQIVASMEDLLELYLDGTSITEV-PSSIELLH 96
                  + L  L  LK++G S  + F P I   + +L  L L    + ++ P++   L 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 97  GLELLNLNN 105
            L++LN+++
Sbjct: 495 SLQVLNMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 4   LRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
           L+ L L   +I+ +   + + LS L  L L G         A S L  L+ L     +  
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 63  KKFPQIVASMEDLLELYLDGTSITEV--PSSIELLHGLELLNLNNCK 107
                 +  ++ L EL +    I     P     L  LE L+L++ K
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
            + + L G  I  +P +       L  L L     L  +   A + L  L  L LS  ++
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCK 107
           L+         +  L  L+LD   + E+   +   L  L+ L L +  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
           L  L LD   ++EL   +   L+ L  L L+    L +LP      L  L +L L G ++
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHG-NR 164

Query: 62  LKKFPQIV-ASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNN 105
           +   P+     +  L  L L    +  V       L  L  L L  
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 35/207 (16%), Positives = 63/207 (30%), Gaps = 36/207 (17%)

Query: 4   LREL-LLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCS 60
           L E+ +    ++  +     + L  L  L +     +  LP +          L +    
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 61  KLKKFPQ--IVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIM 117
            +    +   V    + + L+L+   I E+ +S        EL   +N  N    +    
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN--NNLEEL---- 193

Query: 118 AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQ-IPPNLWLVRAN 176
                F                     G      L++    R+ SLP     NL  +RA 
Sbjct: 194 -PNDVFH--------------------GASGPVILDI-SRTRIHSLPSYGLENLKKLRAR 231

Query: 177 GCSSLVTLSGALNLRKSEYTAVSNPSH 203
              +L  L     L      +++ PSH
Sbjct: 232 STYNLKKLPTLEKLVALMEASLTYPSH 258

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 33/165 (20%)

Query: 4   LRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSK 61
            + L L    ++ L          L  L L  C+ + ++   A  SL  L  L L+G + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG-NP 87

Query: 62  LKKFPQ-IVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNLWTTIIYIMAF 119
           ++       + +  L +L    T++  + +     L  L+ LN+ +  NL  +      F
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH--NLIQSFKLPEYF 145

Query: 120 ARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
                                   S L NL+ L+L   K +QS+ 
Sbjct: 146 ------------------------SNLTNLEHLDLSSNK-IQSIY 165

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 12  TDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSK-----LKKFP 66
            D   LP        +  +       +      +  L+ +  ++L  C       L++  
Sbjct: 48  KDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS 107

Query: 67  QIVASMEDLLELYLDG-TSITEV-PSSIELLHGLELLNLNNCKNL 109
           Q+    + +LE+ +    ++T+    ++     L+ L L++   +
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 22/187 (11%)

Query: 1   MECLRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLS 57
           ++ L+ L L    I ++       L  L  L+L    NLL          L  +  + L 
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY--NLLGELYSSNFYGLPKVAYIDLQ 346

Query: 58  GCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIM 117
                    Q    +E L  L L   ++T    +I  +  +  + L+   N   T+  I 
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSG--NKLVTLPKIN 400

Query: 118 AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANG 177
             A           +             + +L+ L L   +          +      + 
Sbjct: 401 LTANLIHLSENRLENLDILYFL----LRVPHLQILILNQNR----FSSCSGDQTP---SE 449

Query: 178 CSSLVTL 184
             SL  L
Sbjct: 450 NPSLEQL 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	411
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.71
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.7
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.7
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.68
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.68
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.67
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.67
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.67
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.61
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.59
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.52
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.43
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.39
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.39
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.35
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.32
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.19
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.1
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.02
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.77
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.73
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.25
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.69

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=3.2e-22  Score=193.95  Aligned_cols=218  Identities=22%  Similarity=0.288  Sum_probs=173.9

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      +++++|+|++|.++.+|..++++++|++|+|++| .+..+|..+..+++|++|+|++| .+..+|..++++++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence            5789999999999999999999999999999996 45689998999999999999996 456899999999999999999


Q ss_pred             CCCCC-ccChhhhc---------cCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCC
Q 045186           82 GTSIT-EVPSSIEL---------LHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLK  150 (411)
Q Consensus        82 ~~~i~-~lp~~i~~---------l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~  150 (411)
                      +|.+. .+|..++.         +++|+.|++++|.. ..+..++.+++|++|+|++|.+.+      +|..+..+++|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~------l~~~l~~l~~L~  232 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA------LGPAIHHLPKLE  232 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC------CCGGGGGCTTCC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc------CchhhccCCCCC
Confidence            97655 88887665         99999999999973 334558999999999999999999      998899999999


Q ss_pred             EecccCcccccccCCC---CCCCceEEecCCCCCCcccC-CcCcchhhhcccCCCCCceEEEccCCCCCcccccCCCCce
Q 045186          151 ELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG-ALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSS  226 (411)
Q Consensus       151 ~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~-~~nl~~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~~~~~~s  226 (411)
                      .|+|++|...+.+|..   .++|+.|++++|..++.++. +.++  ..++.+.+..+.     --..+|+||........
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l--~~L~~L~L~~n~-----~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL--TQLEKLDLRGCV-----NLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC--TTCCEEECTTCT-----TCCCCCGGGGGSCTTCE
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC--CCCCEEeCCCCC-----chhhccHHHhhccCceE
Confidence            9999999988888864   37899999999988888874 1111  111111111111     12479999998877655


Q ss_pred             EEEEcCCCCC
Q 045186          227 ITVTRPSYFY  236 (411)
Q Consensus       227 l~~~lp~~~~  236 (411)
                      +  .+|.+..
T Consensus       306 l--~l~~~~~  313 (328)
T 4fcg_A          306 I--LVPPHLQ  313 (328)
T ss_dssp             E--ECCGGGS
T ss_pred             E--eCCHHHH
Confidence            4  4455543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=2.3e-21  Score=187.92  Aligned_cols=180  Identities=29%  Similarity=0.457  Sum_probs=162.6

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccC---------
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVAS---------   71 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~---------   71 (411)
                      +++|++|+|++|.++.+|..++++++|++|+|++| .+..+|..+..+++|++|+|++|+.++.+|..++.         
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            46899999999999999999999999999999996 56699999999999999999999999999987764         


Q ss_pred             CCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCC
Q 045186           72 MEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLK  150 (411)
Q Consensus        72 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~  150 (411)
                      +++|++|+|++|.++.+|..++.+++|+.|++++|.. ..+..++.+++|+.|+|++|++.+     .+|..+..+++|+
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~-----~~p~~~~~l~~L~  256 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-----NYPPIFGGRAPLK  256 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC-----BCCCCTTCCCCCC
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh-----hhHHHhcCCCCCC
Confidence            9999999999999999999999999999999999983 233458999999999999988776     4788899999999


Q ss_pred             EecccCcccccccCCC---CCCCceEEecCCCCCCcccC
Q 045186          151 ELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       151 ~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~  186 (411)
                      .|+|++|+.++.+|..   .++|+.|++++|..++.+|.
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            9999999999998863   37899999999999998874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=5.3e-19  Score=169.98  Aligned_cols=215  Identities=15%  Similarity=0.157  Sum_probs=165.2

Q ss_pred             CceeEEEEeCCCCC---cccccccCCCCccEEEEec-CCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcE
Q 045186            2 ECLRELLLDGTDIK---ELPVSIELLSGLVQLSLKG-CKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLE   77 (411)
Q Consensus         2 ~~L~~L~L~~~~l~---~lp~si~~l~~L~~L~L~~-c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~   77 (411)
                      .+++.|+|+++.+.   .+|..++++++|++|+|++ |...+.+|..+.++++|++|+|++|...+.+|..++++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            47999999999998   5899999999999999995 5555688999999999999999997766689999999999999


Q ss_pred             EEccCCCCC-ccChhhhccCCCCEEecCCCCC--ChhHHHhhcc-ccceeecCCCCccccccccccchhhhcCCCCCEec
Q 045186           78 LYLDGTSIT-EVPSSIELLHGLELLNLNNCKN--LWTTIIYIMA-FARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE  153 (411)
Q Consensus        78 L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~-~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~  153 (411)
                      |++++|.++ .+|..++.+++|+.|++++|..  ..+..+..++ +|+.|++++|.+.+     .+|..+..++ |+.|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-----~~~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-----KIPPTFANLN-LAFVD  203 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-----ECCGGGGGCC-CSEEE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-----cCChHHhCCc-ccEEE
Confidence            999999999 8999999999999999999984  4456688887 99999999999985     3788888887 99999


Q ss_pred             ccCcccccccCCC---CCCCceEEecCCCCCCcccCCcCcchhhhcccCCCCCceEEEccCCCCCcccccCCCCceEEE
Q 045186          154 LEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITV  229 (411)
Q Consensus       154 L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~~~nl~~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~~~~~~sl~~  229 (411)
                      +++|.....+|..   .++|+.|+++++.--..++.+..+  ..++.+.+..+.+.     ..+|.||........+.+
T Consensus       204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l--~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS--KNLNGLDLRNNRIY-----GTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCC--TTCCEEECCSSCCE-----ECCCGGGGGCTTCCEEEC
T ss_pred             CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCccccc--CCCCEEECcCCccc-----CcCChHHhcCcCCCEEEC
Confidence            9998755444432   367888888877433333322211  11122222222221     257888877665544433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.77  E-value=9.4e-19  Score=168.25  Aligned_cols=179  Identities=17%  Similarity=0.197  Sum_probs=152.5

Q ss_pred             CCceeEEEEeC-CCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            1 MECLRELLLDG-TDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~-~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      +++|++|+|++ |.+. .+|..++++++|++|+|++|...+.+|..+..+++|++|+|++|...+.+|..++.+++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            57899999996 8887 789899999999999999976555899999999999999999977666899999999999999


Q ss_pred             EccCCCCC-ccChhhhccC-CCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecc
Q 045186           79 YLDGTSIT-EVPSSIELLH-GLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELEL  154 (411)
Q Consensus        79 ~L~~~~i~-~lp~~i~~l~-~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L  154 (411)
                      ++++|.++ .+|..++.++ +|+.|++++|.  +..+..+..++ |+.|++++|.+.+     .+|..+..+++|+.|++
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L  228 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-----DASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-----CCGGGCCTTSCCSEEEC
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-----cCCHHHhcCCCCCEEEC
Confidence            99999999 8999999998 99999999997  24455677777 9999999999986     26678899999999999


Q ss_pred             cCcccccccCCC--CCCCceEEecCCCCCCccc
Q 045186          155 EDCKRLQSLPQI--PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       155 ~~c~~l~~lp~l--~~~L~~L~~~~c~~L~~l~  185 (411)
                      ++|.....+|.+  .++|++|+++++.--..++
T Consensus       229 ~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  261 (313)
T 1ogq_A          229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             CSSEECCBGGGCCCCTTCCEEECCSSCCEECCC
T ss_pred             CCCceeeecCcccccCCCCEEECcCCcccCcCC
Confidence            998765555543  4789999998875433333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=2e-18  Score=159.06  Aligned_cols=176  Identities=13%  Similarity=0.137  Sum_probs=145.4

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L   78 (411)
                      ++|++|+|++|.|+.+|. .++++++|++|+|++|..++.+|. .+..+++|++|++++|+.++.+| ..+.++++|+.|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            478999999999998876 689999999999999765877765 67889999999999977788777 467889999999


Q ss_pred             EccCCCCCccChhhhccCCCC---EEecCCC-C--CChhHHHhhccccc-eeecCCCCccccccccccchhhhcCCCCCE
Q 045186           79 YLDGTSITEVPSSIELLHGLE---LLNLNNC-K--NLWTTIIYIMAFAR-SFQFDGKEFISCSFDVVFSVSISGLLNLKE  151 (411)
Q Consensus        79 ~L~~~~i~~lp~~i~~l~~L~---~L~L~~~-~--~~~~~~l~~l~~L~-~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~  151 (411)
                      ++++|.++.+|. ++.+++|+   .|++++| .  ......+..+++|+ .|++++|.++.      +|......++|+.
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~------i~~~~~~~~~L~~  183 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS------VQGYAFNGTKLDA  183 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE------ECTTTTTTCEEEE
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc------cCHhhcCCCCCCE
Confidence            999999999997 88888888   9999999 4  22334588899999 99999999998      8876655589999


Q ss_pred             ecccCcccccccCCC----C-CCCceEEecCCCCCCccc
Q 045186          152 LELEDCKRLQSLPQI----P-PNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       152 L~L~~c~~l~~lp~l----~-~~L~~L~~~~c~~L~~l~  185 (411)
                      |++++|+.++.+|.-    . ++|+.|+++++ .++.++
T Consensus       184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~  221 (239)
T 2xwt_C          184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALP  221 (239)
T ss_dssp             EECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCC
T ss_pred             EEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCC
Confidence            999998777777642    2 57888888764 344544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=2.1e-18  Score=163.07  Aligned_cols=170  Identities=22%  Similarity=0.276  Sum_probs=142.4

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCccc-chhccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKF-PQIVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L   78 (411)
                      ++|++|+|++|.|+.++. .++++++|++|+|++|. +..+ |..+..+++|++|++++|..++.+ |..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            579999999999998874 58999999999999964 5554 778899999999999998767776 6788999999999


Q ss_pred             EccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecc
Q 045186           79 YLDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELEL  154 (411)
Q Consensus        79 ~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L  154 (411)
                      ++++|.++.+ |..+..+++|+.|++++|.  ......++.+++|+.|+|++|.++.      +|. .+..+++|+.|++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------VPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEEC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc------cCHHHhcCccccCEEEC
Confidence            9999999966 5668899999999999997  3334458899999999999999998      875 4888999999999


Q ss_pred             cCcccccccCCC---CCCCceEEecCC
Q 045186          155 EDCKRLQSLPQI---PPNLWLVRANGC  178 (411)
Q Consensus       155 ~~c~~l~~lp~l---~~~L~~L~~~~c  178 (411)
                      ++|......|..   .++|+.|+++++
T Consensus       185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          185 HQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCcccccCHhHccCcccccEeeCCCC
Confidence            998644333432   268899999887

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=5.3e-18  Score=151.80  Aligned_cols=147  Identities=14%  Similarity=0.167  Sum_probs=116.0

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++|++|++++|.|+.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|+.|+++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            57888888888888888 5888888888888886 555554 57788888888888865545567778888888888888


Q ss_pred             CCCCC-ccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186           82 GTSIT-EVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus        82 ~~~i~-~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      +|.++ ..|..++.+++|+.|++++|. ......+..+++|+.|++++|.+..      ++ .+..+++|+.|++++|+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~------~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD------YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC------CT-TGGGCSSCCEEEECBC-
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC------hH-HhccCCCCCEEEeeCcc
Confidence            88888 467778888888888888886 3333457888888888888888887      77 67888888888888865

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=9.6e-18  Score=158.55  Aligned_cols=165  Identities=18%  Similarity=0.212  Sum_probs=130.5

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT   83 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (411)
                      ++++.+++.++.+|..+  .++|++|+|++| .+..+| ..+..+++|++|+|++|......|..++.+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56788888888888644  578999999985 455555 56888999999999996544444778888999999999999


Q ss_pred             C-CCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecccCcc
Q 045186           84 S-ITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELEDCK  158 (411)
Q Consensus        84 ~-i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~~c~  158 (411)
                      . ++.+ |..+..+++|+.|++++|.  ...+..+..+++|++|++++|.+..      +|. .+..+++|+.|++++|.
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA------LPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc------cCHhHhccCCCccEEECCCCc
Confidence            7 8876 6678889999999999987  3334558889999999999999988      774 47889999999999874


Q ss_pred             cccccCC--C--CCCCceEEecCCC
Q 045186          159 RLQSLPQ--I--PPNLWLVRANGCS  179 (411)
Q Consensus       159 ~l~~lp~--l--~~~L~~L~~~~c~  179 (411)
                       ++.+|.  +  .++|+.|+++++.
T Consensus       165 -l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          165 -ISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             -CCEECTTTTTTCTTCCEEECCSSC
T ss_pred             -ccccCHHHhcCccccCEEECCCCc
Confidence             566654  2  3688888888774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.75  E-value=2.7e-18  Score=163.95  Aligned_cols=171  Identities=16%  Similarity=0.154  Sum_probs=138.7

Q ss_pred             CCceeEEEEeCCCCCcc---cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc--hhccCCCCC
Q 045186            1 MECLRELLLDGTDIKEL---PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP--QIVASMEDL   75 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~l---p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L   75 (411)
                      +++|++|+|++|.++.+   +..+..+++|++|+|++| .+..+|..+..+++|++|++++| .+..++  ..+..+++|
T Consensus        51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L  128 (306)
T 2z66_A           51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNL  128 (306)
T ss_dssp             CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTC
T ss_pred             cccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCC
Confidence            47899999999998855   566788999999999985 67788888889999999999995 455555  368889999


Q ss_pred             cEEEccCCCCC-ccChhhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCC
Q 045186           76 LELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLK  150 (411)
Q Consensus        76 ~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~  150 (411)
                      +.|++++|.+. ..|..+..+++|+.|++++|...   .+..+..+++|+.|++++|.+.+      + |..+..+++|+
T Consensus       129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~  202 (306)
T 2z66_A          129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQ  202 (306)
T ss_dssp             CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCC
T ss_pred             CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC------cCHHHhcCCCCCC
Confidence            99999999998 45566888999999999998732   34558889999999999999988      6 56788899999


Q ss_pred             EecccCcccccccCCC----CCCCceEEecCCCC
Q 045186          151 ELELEDCKRLQSLPQI----PPNLWLVRANGCSS  180 (411)
Q Consensus       151 ~L~L~~c~~l~~lp~l----~~~L~~L~~~~c~~  180 (411)
                      .|++++|. ++.++..    .++|+.|+++++.-
T Consensus       203 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          203 VLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             EEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             EEECCCCc-cCccChhhccCcccCCEeECCCCCC
Confidence            99999876 4555432    26889999988743

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.74  E-value=3.3e-18  Score=180.06  Aligned_cols=175  Identities=13%  Similarity=0.191  Sum_probs=154.8

Q ss_pred             CCceeEEEEeCCCCCc------------------cccccc--CCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCC
Q 045186            1 MECLRELLLDGTDIKE------------------LPVSIE--LLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS   60 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~------------------lp~si~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~   60 (411)
                      |++|++|+|++|.++.                  +|..++  ++++|++|+|++|...+.+|..+.++++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            5789999999999997                  999999  99999999999998889999999999999999999987


Q ss_pred             -CCc-ccchhccCC------CCCcEEEccCCCCCccCh--hhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCC
Q 045186           61 -KLK-KFPQIVASM------EDLLELYLDGTSITEVPS--SIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGK  128 (411)
Q Consensus        61 -~l~-~lp~~l~~l------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n  128 (411)
                       ..+ .+|..++++      ++|++|++++|.++.+|.  .++.+++|+.|++++|..  ..+ .++.+++|+.|++++|
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence             444 699988876      999999999999999999  999999999999999983  233 6888999999999999


Q ss_pred             CccccccccccchhhhcCCC-CCEecccCcccccccCCCC-----CCCceEEecCCCCCCc
Q 045186          129 EFISCSFDVVFSVSISGLLN-LKELELEDCKRLQSLPQIP-----PNLWLVRANGCSSLVT  183 (411)
Q Consensus       129 ~~~~~~~~~~lp~~l~~l~~-L~~L~L~~c~~l~~lp~l~-----~~L~~L~~~~c~~L~~  183 (411)
                      .+..      +|..+..+++ |+.|++++|. ++.+|...     ++|+.|+++++.--..
T Consensus       364 ~l~~------lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~  417 (636)
T 4eco_A          364 QITE------IPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSV  417 (636)
T ss_dssp             EEEE------CCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             cccc------ccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCc
Confidence            9998      9999999999 9999999987 55777642     2688999988754433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=2.1e-17  Score=158.47  Aligned_cols=169  Identities=22%  Similarity=0.330  Sum_probs=142.6

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++|++|++++|.++.+| .+..+++|++|+|++| .+..++. +..+++|++|+|++|. +..++ .++.+++|+.|+++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred             CCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence            57999999999999988 5899999999999996 6777777 8899999999999964 67776 58889999999999


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ  161 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~  161 (411)
                      +|.++.++. +..+++|+.|++++|.......+..+++|+.|++++|.+..      ++. +..+++|+.|++++|. +.
T Consensus       116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------~~~-l~~l~~L~~L~l~~n~-l~  186 (308)
T 1h6u_A          116 STQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD------LTP-LANLSKLTTLKADDNK-IS  186 (308)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCSSC-CC
T ss_pred             CCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC------Chh-hcCCCCCCEEECCCCc-cC
Confidence            999998875 89999999999999984433448899999999999999998      886 8899999999999975 55


Q ss_pred             ccCCC--CCCCceEEecCCCCCCccc
Q 045186          162 SLPQI--PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       162 ~lp~l--~~~L~~L~~~~c~~L~~l~  185 (411)
                      .++.+  .++|+.|++++|. +..++
T Consensus       187 ~~~~l~~l~~L~~L~L~~N~-l~~~~  211 (308)
T 1h6u_A          187 DISPLASLPNLIEVHLKNNQ-ISDVS  211 (308)
T ss_dssp             CCGGGGGCTTCCEEECTTSC-CCBCG
T ss_pred             cChhhcCCCCCCEEEccCCc-cCccc
Confidence            66543  3789999998874 34433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.74  E-value=6.5e-18  Score=181.53  Aligned_cols=203  Identities=18%  Similarity=0.153  Sum_probs=162.7

Q ss_pred             CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      +++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..+..+++|++|+|++|...+.+|..++.+++|+.|+
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence            478999999999998 7888899999999999999877778999999999999999999887789999999999999999


Q ss_pred             ccCCCCC-ccChhhhccCCCCEEecCCCCC--ChhH--------------------------------------------
Q 045186           80 LDGTSIT-EVPSSIELLHGLELLNLNNCKN--LWTT--------------------------------------------  112 (411)
Q Consensus        80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~--~~~~--------------------------------------------  112 (411)
                      |++|.++ .+|..++.+++|+.|++++|..  ..+.                                            
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR  600 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence            9999998 8999999999999999998861  1111                                            


Q ss_pred             --------------------------HHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCC
Q 045186          113 --------------------------IIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI  166 (411)
Q Consensus       113 --------------------------~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l  166 (411)
                                                .++.+++|+.|+|++|++++     .+|..++.+++|+.|+|++|...+.+|..
T Consensus       601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  675 (768)
T 3rgz_A          601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-----YIPKEIGSMPYLFILNLGHNDISGSIPDE  675 (768)
T ss_dssp             GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-----CCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             chhhhccccccccccccceecccCchhhhccccccEEECcCCcccc-----cCCHHHhccccCCEEeCcCCccCCCCChH
Confidence                                      13345789999999999986     48999999999999999999877788863


Q ss_pred             ---CCCCceEEecCCCCCCcccC-CcCcchhhhcccCCCCCceEEEcc
Q 045186          167 ---PPNLWLVRANGCSSLVTLSG-ALNLRKSEYTAVSNPSHKLSIVVP  210 (411)
Q Consensus       167 ---~~~L~~L~~~~c~~L~~l~~-~~nl~~~~~~~~~~~~~~~~~~~p  210 (411)
                         .++|+.|+++++.--..+|. +.++  ..++.+....+.+...+|
T Consensus       676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l--~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          676 VGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEECCCGGGGGC--CCCSEEECCSSEEEEECC
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCC--CCCCEEECcCCcccccCC
Confidence               37889999988765445543 1111  112333444555554444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=2.2e-17  Score=158.33  Aligned_cols=143  Identities=24%  Similarity=0.370  Sum_probs=74.9

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++|++|+|++|.++.++. +..+++|++|+|++| .+..+| .+..+++|++|++++| .+..+|. ++.+++|+.|+++
T Consensus        63 ~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~  137 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLD  137 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECC
T ss_pred             CCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECC
Confidence            455555555555555554 555555555555553 244443 2555555555555553 2344443 4555555555555


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC  157 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c  157 (411)
                      +|.++.++. ++.+++|+.|++++|.......+..+++|+.|++++|.+..      ++. +..+++|+.|++++|
T Consensus       138 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------~~~-l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          138 LNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD------ISP-LASLPNLIEVHLKNN  205 (308)
T ss_dssp             SSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------CGG-GGGCTTCCEEECTTS
T ss_pred             CCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc------Chh-hcCCCCCCEEEccCC
Confidence            555555543 55555555555555542222225555555555555555555      443 455555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=4.4e-17  Score=153.05  Aligned_cols=164  Identities=22%  Similarity=0.317  Sum_probs=92.9

Q ss_pred             eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEEEcc
Q 045186            4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLELYLD   81 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~   81 (411)
                      ++.++++++.++.+|..+.  ++|+.|+|++| .+..+|. .+..+++|++|+|++| .+..+|.. +..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence            4556666666666665443  45666666664 3444432 4556666666666663 34444433 3556666666666


Q ss_pred             CCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCc
Q 045186           82 GTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDC  157 (411)
Q Consensus        82 ~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c  157 (411)
                      +|.++.+|.. +..+++|+.|++++|.  ...+..+..+++|++|+|++|.+..      +|.. +..+++|+.|+|++|
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS------LPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc------cCHhHccCCcccceeEecCC
Confidence            6666655543 4556666666666665  2223335666666666666666666      5533 456666666666665


Q ss_pred             ccccccCC--C--CCCCceEEecCC
Q 045186          158 KRLQSLPQ--I--PPNLWLVRANGC  178 (411)
Q Consensus       158 ~~l~~lp~--l--~~~L~~L~~~~c  178 (411)
                      . ++.++.  +  .++|+.|+++++
T Consensus       168 ~-l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          168 Q-LKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             C-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             c-CcEeChhHhccCCCcCEEECCCC
Confidence            3 333432  1  145666666555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=1.8e-17  Score=155.99  Aligned_cols=176  Identities=16%  Similarity=0.141  Sum_probs=139.3

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      ++|++|+|++|.++.++. .++++++|++|+|++| .+..++ ..+..+++|++|+|++|......|..+.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            369999999999998876 6899999999999996 555554 4688899999999999654444446788999999999


Q ss_pred             ccCCCCCccCh-hhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCC----
Q 045186           80 LDGTSITEVPS-SIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLK----  150 (411)
Q Consensus        80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~----  150 (411)
                      +++|.++.++. .++.+++|+.|++++|...   .+..+..+++|+.|++++|.+++      ++ ..+..+++|+    
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE------ECGGGGHHHHTCTTCCE
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc------CCHHHhhhhhhccccce
Confidence            99999997766 6889999999999999833   35678999999999999999988      65 4566666666    


Q ss_pred             EecccCcccccccCCC---CCCCceEEecCCCCCCcccC
Q 045186          151 ELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       151 ~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~  186 (411)
                      .|++++|. +..++..   ..+|+.|+++++. ++.++.
T Consensus       181 ~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~  217 (276)
T 2z62_A          181 SLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPD  217 (276)
T ss_dssp             EEECCSSC-CCEECTTSSCSCCEEEEECCSSC-CSCCCT
T ss_pred             eeecCCCc-ccccCccccCCCcccEEECCCCc-eeecCH
Confidence            88888865 4555432   2478899998775 555553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=5.9e-18  Score=183.08  Aligned_cols=177  Identities=15%  Similarity=0.164  Sum_probs=153.5

Q ss_pred             CCceeEEEEeCCCCCc------------------cccccc--CCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCC
Q 045186            1 MECLRELLLDGTDIKE------------------LPVSIE--LLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS   60 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~------------------lp~si~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~   60 (411)
                      |++|++|+|++|.|+.                  +|..++  ++++|++|+|++|...+.+|..+.++++|+.|+|++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            5789999999999998                  999988  99999999999998899999999999999999999987


Q ss_pred             CCc--ccchhccCCC-------CCcEEEccCCCCCccCh--hhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCC
Q 045186           61 KLK--KFPQIVASME-------DLLELYLDGTSITEVPS--SIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKE  129 (411)
Q Consensus        61 ~l~--~lp~~l~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~  129 (411)
                      .+.  .+|..++++.       +|+.|+|++|.++.+|.  .++++++|+.|+|++|....-..++.+++|+.|+|++|.
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc
Confidence            344  6888776655       99999999999999999  999999999999999984322268899999999999999


Q ss_pred             ccccccccccchhhhcCCC-CCEecccCcccccccCCCC-----CCCceEEecCCCCCCcc
Q 045186          130 FISCSFDVVFSVSISGLLN-LKELELEDCKRLQSLPQIP-----PNLWLVRANGCSSLVTL  184 (411)
Q Consensus       130 ~~~~~~~~~lp~~l~~l~~-L~~L~L~~c~~l~~lp~l~-----~~L~~L~~~~c~~L~~l  184 (411)
                      +..      +|..+..+++ |+.|+|++|. +..+|...     ++|+.|++++|.--..+
T Consensus       607 l~~------lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          607 IEE------IPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             CSC------CCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred             ccc------chHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence            998      9999999999 9999999986 55777642     24889999887544333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.6e-17  Score=156.54  Aligned_cols=163  Identities=22%  Similarity=0.325  Sum_probs=137.8

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++|++|++++|.++.++. ++.+++|++|+|++| .+..++. +..+++|++|++++| .+..+|. ++.+++|+.|+++
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECT
T ss_pred             CcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECC
Confidence            578999999999998875 899999999999996 5677776 889999999999995 5666665 8899999999999


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ  161 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~  161 (411)
                      +|.++.++ .+..+++|+.|++++|.......+..+++|+.|++++|.+.+      ++. +..+++|+.|++++| .++
T Consensus       121 ~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~------~~~-l~~l~~L~~L~L~~N-~i~  191 (291)
T 1h6t_A          121 HNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------IVP-LAGLTKLQNLYLSKN-HIS  191 (291)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------CGG-GTTCTTCCEEECCSS-CCC
T ss_pred             CCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc------chh-hcCCCccCEEECCCC-cCC
Confidence            99999874 688999999999999984444678999999999999999998      875 899999999999997 466


Q ss_pred             ccCCCC--CCCceEEecCC
Q 045186          162 SLPQIP--PNLWLVRANGC  178 (411)
Q Consensus       162 ~lp~l~--~~L~~L~~~~c  178 (411)
                      .+|.+.  ++|+.|+++++
T Consensus       192 ~l~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          192 DLRALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             BCGGGTTCTTCSEEEEEEE
T ss_pred             CChhhccCCCCCEEECcCC
Confidence            665543  56777777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=3e-17  Score=176.39  Aligned_cols=227  Identities=18%  Similarity=0.132  Sum_probs=177.2

Q ss_pred             CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      +++|++|+|++|.++ .+|..++++++|+.|+|++|...+.+|..+..+++|++|++++|...+.+|..++++++|+.|+
T Consensus       417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  496 (768)
T 3rgz_A          417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS  496 (768)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence            478999999999998 7788899999999999999887778999999999999999999888889999999999999999


Q ss_pred             ccCCCCC-ccChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCcccc-----------------------
Q 045186           80 LDGTSIT-EVPSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISC-----------------------  133 (411)
Q Consensus        80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~-----------------------  133 (411)
                      |++|.++ .+|..++.+++|+.|++++|..  ..+..++.+++|+.|++++|.+.+.                       
T Consensus       497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~  576 (768)
T 3rgz_A          497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV  576 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred             ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence            9999999 8999999999999999999983  4567799999999999999988741                       


Q ss_pred             ------------------------------------------ccccccchhhhcCCCCCEecccCcccccccCCC---CC
Q 045186          134 ------------------------------------------SFDVVFSVSISGLLNLKELELEDCKRLQSLPQI---PP  168 (411)
Q Consensus       134 ------------------------------------------~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~  168 (411)
                                                                ...+.+|..+..+++|+.|+|++|...+.+|.-   .+
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  656 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP  656 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence                                                      000112333455688999999999877777753   37


Q ss_pred             CCceEEecCCCCCCcccC-CcCcchhhhcccCCCCCceEEEccCCCCCcccccCCC-------CceEEEEcCCC
Q 045186          169 NLWLVRANGCSSLVTLSG-ALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNE-------GSSITVTRPSY  234 (411)
Q Consensus       169 ~L~~L~~~~c~~L~~l~~-~~nl~~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~~~~-------~~sl~~~lp~~  234 (411)
                      .|+.|+++++.--..+|. +.++  ..++.+.+..+.+.     +.||+.|.....       .+.++..+|..
T Consensus       657 ~L~~L~Ls~N~l~g~ip~~l~~L--~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          657 YLFILNLGHNDISGSIPDEVGDL--RGLNILDLSSNKLD-----GRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCCE-----ECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             cCCEEeCcCCccCCCCChHHhCC--CCCCEEECCCCccc-----CcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            889999998865555553 1122  11233333333333     367888776554       45666677753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=4.4e-17  Score=153.24  Aligned_cols=170  Identities=22%  Similarity=0.359  Sum_probs=139.8

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEE
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELY   79 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~   79 (411)
                      +++|+.|+++++.++.++. ++.+++|++|+|++| .+..++ .+..+++|++|++++|. +..+| ..++.+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccccc-cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEE
Confidence            3679999999999988775 899999999999996 466665 58899999999999975 55555 4578999999999


Q ss_pred             ccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEeccc
Q 045186           80 LDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELE  155 (411)
Q Consensus        80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~  155 (411)
                      +++|.++.+|.. ++.+++|+.|++++|.  ...+..++.+++|+.|++++|.+++      +|.. +..+++|+.|+++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS------LPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc------cCHHHhcCCccCCEEECC
Confidence            999999977765 7899999999999997  3344457899999999999999998      7754 6889999999999


Q ss_pred             CcccccccCC-C---CCCCceEEecCCCCC
Q 045186          156 DCKRLQSLPQ-I---PPNLWLVRANGCSSL  181 (411)
Q Consensus       156 ~c~~l~~lp~-l---~~~L~~L~~~~c~~L  181 (411)
                      +|. +..++. .   .++|+.|++.+++-.
T Consensus       190 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          190 QNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             SSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCc-CCccCHHHHhCCcCCCEEEccCCCcc
Confidence            986 444443 2   368888988876543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=4.1e-17  Score=153.44  Aligned_cols=152  Identities=20%  Similarity=0.264  Sum_probs=128.4

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      +++|++|+|++|.++.++ .++++++|++|+|++| .+..+|. .+..+++|++|++++|......+..++.+++|+.|+
T Consensus        62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            578999999999999876 5999999999999997 4555554 468899999999999754443445578999999999


Q ss_pred             ccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEeccc
Q 045186           80 LDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELE  155 (411)
Q Consensus        80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~  155 (411)
                      +++|.++.+|.. ++.+++|+.|++++|.  ...+..++.+++|+.|++++|.+.+      +|. .+..+++|+.|+++
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS------VPDGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECC
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc------cCHHHHhCCcCCCEEEcc
Confidence            999999988765 6899999999999997  3344457899999999999999998      764 47899999999999


Q ss_pred             Ccccc
Q 045186          156 DCKRL  160 (411)
Q Consensus       156 ~c~~l  160 (411)
                      +|+..
T Consensus       214 ~N~~~  218 (272)
T 3rfs_A          214 DNPWD  218 (272)
T ss_dssp             SSCBC
T ss_pred             CCCcc
Confidence            98744

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.72  E-value=1.4e-17  Score=175.22  Aligned_cols=162  Identities=11%  Similarity=0.190  Sum_probs=140.1

Q ss_pred             CcccccccCCCCccEEEEecCCCCcc------------------cccccC--CCCCccEEEeeCCCCCcccchhccCCCC
Q 045186           15 KELPVSIELLSGLVQLSLKGCKNLLS------------------LPIAIS--SLKCLRNLKLSGCSKLKKFPQIVASMED   74 (411)
Q Consensus        15 ~~lp~si~~l~~L~~L~L~~c~~l~~------------------lp~~i~--~l~~L~~L~Ls~c~~l~~lp~~l~~l~~   74 (411)
                      +.+|.+++++++|++|+|++|. +..                  +|..++  ++++|++|+|++|...+.+|..++++++
T Consensus       196 ~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE  274 (636)
T ss_dssp             EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred             ccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence            3588889999999999999976 555                  999999  9999999999999989999999999999


Q ss_pred             CcEEEccCCC-CC--ccChhhhcc------CCCCEEecCCCCC-ChhH--HHhhccccceeecCCCCcc-ccccccccch
Q 045186           75 LLELYLDGTS-IT--EVPSSIELL------HGLELLNLNNCKN-LWTT--IIYIMAFARSFQFDGKEFI-SCSFDVVFSV  141 (411)
Q Consensus        75 L~~L~L~~~~-i~--~lp~~i~~l------~~L~~L~L~~~~~-~~~~--~l~~l~~L~~L~Ls~n~~~-~~~~~~~lp~  141 (411)
                      |++|++++|. ++  .+|..++.+      ++|+.|++++|.. ..+.  .++.+++|+.|++++|.+. .      +| 
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~------ip-  347 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK------LP-  347 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE------CC-
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc------hh-
Confidence            9999999998 88  499999887      9999999999983 3334  6999999999999999999 6      89 


Q ss_pred             hhhcCCCCCEecccCcccccccCCCC---CC-CceEEecCCCCCCcccC
Q 045186          142 SISGLLNLKELELEDCKRLQSLPQIP---PN-LWLVRANGCSSLVTLSG  186 (411)
Q Consensus       142 ~l~~l~~L~~L~L~~c~~l~~lp~l~---~~-L~~L~~~~c~~L~~l~~  186 (411)
                      .+..+++|+.|++++|. +..+|...   ++ |+.|+++++. ++.+|.
T Consensus       348 ~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~  394 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPN  394 (636)
T ss_dssp             CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCS
T ss_pred             hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-Ccccch
Confidence            89999999999999986 45776532   45 9999998875 445554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=5.5e-17  Score=154.32  Aligned_cols=173  Identities=18%  Similarity=0.183  Sum_probs=129.4

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|+++++++++++.+|..+.  ++|+.|+|++|......|..+..+++|++|+|++| .+..++.. +.+++|+.|++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence            4678888888888888887654  68888888886543334566788888888888884 46666654 67888888888


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDC  157 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c  157 (411)
                      ++|.++.+|..+..+++|+.|++++|.  ...+..+..+++|+.|+|++|.+..      +|.. +..+++|+.|+|++|
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------LPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTS
T ss_pred             CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc------cChhhcccccCCCEEECCCC
Confidence            888888888888888888888888887  3333557888888888888888888      7644 567888888888886


Q ss_pred             ccccccCCC----CCCCceEEecCCCCCCccc
Q 045186          158 KRLQSLPQI----PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       158 ~~l~~lp~l----~~~L~~L~~~~c~~L~~l~  185 (411)
                      . ++.+|.-    .++|+.|+++++. ++.++
T Consensus       159 ~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip  188 (290)
T 1p9a_G          159 N-LTELPAGLLNGLENLDTLLLQENS-LYTIP  188 (290)
T ss_dssp             C-CSCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred             c-CCccCHHHhcCcCCCCEEECCCCc-CCccC
Confidence            4 5666642    2678888887653 44554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=4.2e-17  Score=150.23  Aligned_cols=171  Identities=16%  Similarity=0.180  Sum_probs=140.0

Q ss_pred             CCceeEEEEeCCC-CCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCc-
Q 045186            1 MECLRELLLDGTD-IKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLL-   76 (411)
Q Consensus         1 l~~L~~L~L~~~~-l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~-   76 (411)
                      +++|++|++++|. ++.++. .++++++|++|+|++|+.+..+| ..+..+++|++|++++| .+..+|. ++.+++|+ 
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~  131 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDI  131 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCS
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-ccccccccc
Confidence            5789999999997 998876 68999999999999866788776 45778999999999996 4667887 88888888 


Q ss_pred             --EEEccCC-CCCccChh-hhccCCCC-EEecCCCCCC--hhHHHhhccccceeecCCCC-ccccccccccc-hhhhcC-
Q 045186           77 --ELYLDGT-SITEVPSS-IELLHGLE-LLNLNNCKNL--WTTIIYIMAFARSFQFDGKE-FISCSFDVVFS-VSISGL-  146 (411)
Q Consensus        77 --~L~L~~~-~i~~lp~~-i~~l~~L~-~L~L~~~~~~--~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~lp-~~l~~l-  146 (411)
                        .|++++| .++.+|.. +..+++|+ .|++++|...  ....+.. ++|+.|++++|. ++.      +| ..+..+ 
T Consensus       132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~------i~~~~~~~l~  204 (239)
T 2xwt_C          132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTV------IDKDAFGGVY  204 (239)
T ss_dssp             EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCE------ECTTTTTTCS
T ss_pred             ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCccc------CCHHHhhccc
Confidence              9999999 99988864 88999999 9999999732  2223444 899999999994 988      86 457888 


Q ss_pred             CCCCEecccCcccccccCCC-CCCCceEEecCCCCC
Q 045186          147 LNLKELELEDCKRLQSLPQI-PPNLWLVRANGCSSL  181 (411)
Q Consensus       147 ~~L~~L~L~~c~~l~~lp~l-~~~L~~L~~~~c~~L  181 (411)
                      ++|+.|++++|+ ++.+|.. .++|+.|++.++..|
T Consensus       205 ~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          205 SGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL  239 (239)
T ss_dssp             BCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred             cCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence            999999999964 6677654 578899998887543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.71  E-value=6e-17  Score=162.78  Aligned_cols=175  Identities=21%  Similarity=0.264  Sum_probs=128.2

Q ss_pred             CCceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcE
Q 045186            1 MECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLE   77 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~   77 (411)
                      +++|++|+|++|.|+.++ ..|.++++|++|+|++| .+..+|. .+..+++|++|+|++|. +..+|. .+.++++|+.
T Consensus        87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~  164 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRR  164 (440)
T ss_dssp             CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCE
Confidence            468899999999888775 45888999999999985 5666654 57788889999998854 555553 6778888888


Q ss_pred             EEccCC-CCCccCh-hhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEecc
Q 045186           78 LYLDGT-SITEVPS-SIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELEL  154 (411)
Q Consensus        78 L~L~~~-~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L  154 (411)
                      |++++| .+..++. .+..+++|+.|++++|.......+..+++|+.|+|++|.++.      + |..+..+++|+.|+|
T Consensus       165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L  238 (440)
T 3zyj_A          165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA------IRPGSFQGLMHLQKLWM  238 (440)
T ss_dssp             EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE------ECTTTTTTCTTCCEEEC
T ss_pred             eCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc------cChhhhccCccCCEEEC
Confidence            888874 5556655 577888888888888874333347778888888888888877      5 567788888888888


Q ss_pred             cCcccccccCC----CCCCCceEEecCCCCCCccc
Q 045186          155 EDCKRLQSLPQ----IPPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       155 ~~c~~l~~lp~----l~~~L~~L~~~~c~~L~~l~  185 (411)
                      ++|. ++.++.    -.++|+.|+++++ .++.++
T Consensus       239 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~  271 (440)
T 3zyj_A          239 IQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLP  271 (440)
T ss_dssp             TTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCC
T ss_pred             CCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccC
Confidence            8865 444432    1267788888776 344444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=1e-16  Score=148.89  Aligned_cols=168  Identities=18%  Similarity=0.226  Sum_probs=135.5

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +.++++++++.++.+|..+.  ++|+.|+|++|......|..+..+++|++|+|++|......|..+..+++|++|+|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            46789999999999998765  6899999999754444455688999999999999655444455688999999999999


Q ss_pred             CCCCccCh-hhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecccCcc
Q 045186           83 TSITEVPS-SIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELEDCK  158 (411)
Q Consensus        83 ~~i~~lp~-~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~~c~  158 (411)
                      |.++.+|. .+..+++|+.|+|++|.  ......+..+++|+.|+|++|.+..      +|. .+..+++|+.|+|++|.
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------IPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc------cCHHHcCcCcCCCEEECCCCc
Confidence            99997775 46899999999999997  3344457889999999999999999      876 68899999999999975


Q ss_pred             cccccCC--C--CCCCceEEecCCC
Q 045186          159 RLQSLPQ--I--PPNLWLVRANGCS  179 (411)
Q Consensus       159 ~l~~lp~--l--~~~L~~L~~~~c~  179 (411)
                       ++.+|.  +  .++|+.|++.+++
T Consensus       167 -l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          167 -LQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             -CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             -CCccCHHHHhCCCCCCEEEeeCCc
Confidence             555543  1  2567777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=9.7e-17  Score=155.64  Aligned_cols=165  Identities=17%  Similarity=0.237  Sum_probs=113.3

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|++++|.++.++ .+.++++|++|++++| .+..+|. +..+++|++|++++|..+..++. ++.+++|+.|++
T Consensus        87 l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l  162 (347)
T 4fmz_A           87 LVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTV  162 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEEC
T ss_pred             CCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEe
Confidence            468899999999888876 4888899999999885 5666665 77888888888888776666554 777888888888


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL  160 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l  160 (411)
                      ++|.+..++. +..+++|+.|++++|.......+..+++|+.|++++|.+..      ++. +..+++|+.|++++|. +
T Consensus       163 ~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~------~~~-~~~~~~L~~L~l~~n~-l  233 (347)
T 4fmz_A          163 TESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD------ITP-VANMTRLNSLKIGNNK-I  233 (347)
T ss_dssp             CSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC------CGG-GGGCTTCCEEECCSSC-C
T ss_pred             cCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC------Cch-hhcCCcCCEEEccCCc-c
Confidence            8888776665 77777888888877763332235566666666666666655      443 5556666666666653 3


Q ss_pred             cccCCC--CCCCceEEecCC
Q 045186          161 QSLPQI--PPNLWLVRANGC  178 (411)
Q Consensus       161 ~~lp~l--~~~L~~L~~~~c  178 (411)
                      ..++.+  .++|++|++++|
T Consensus       234 ~~~~~~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          234 TDLSPLANLSQLTWLEIGTN  253 (347)
T ss_dssp             CCCGGGTTCTTCCEEECCSS
T ss_pred             CCCcchhcCCCCCEEECCCC
Confidence            333322  245555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=9.2e-17  Score=161.96  Aligned_cols=176  Identities=22%  Similarity=0.244  Sum_probs=124.2

Q ss_pred             CCceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcE
Q 045186            1 MECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLE   77 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~   77 (411)
                      +++|++|+|++|.|+.++ ..+.++++|++|+|++| .+..+|. .+..+++|++|+|++|. +..+|. .+.++++|+.
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~  175 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMR  175 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccE
Confidence            467888999888888765 55888888888888885 4556654 36778888888888854 555554 5777888888


Q ss_pred             EEccC-CCCCccCh-hhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEecc
Q 045186           78 LYLDG-TSITEVPS-SIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELEL  154 (411)
Q Consensus        78 L~L~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L  154 (411)
                      |++++ +.+..++. .+..+++|+.|++++|.......+..+++|+.|+|++|.+.+      + |..+..+++|+.|+|
T Consensus       176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L  249 (452)
T 3zyi_A          176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE------IRPGSFHGLSSLKKLWV  249 (452)
T ss_dssp             EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE------ECGGGGTTCTTCCEEEC
T ss_pred             EeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc------cCcccccCccCCCEEEe
Confidence            88887 45556665 477788888888888874333346777788888888888777      5 566777888888888


Q ss_pred             cCcccccccCCC---CCCCceEEecCCCCCCccc
Q 045186          155 EDCKRLQSLPQI---PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       155 ~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~  185 (411)
                      ++|......+..   .++|+.|+++++ .++.++
T Consensus       250 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~  282 (452)
T 3zyi_A          250 MNSQVSLIERNAFDGLASLVELNLAHN-NLSSLP  282 (452)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             CCCcCceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence            876533222221   257777777766 444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.71  E-value=9.1e-18  Score=160.26  Aligned_cols=171  Identities=19%  Similarity=0.271  Sum_probs=143.0

Q ss_pred             CceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCccc---ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcE
Q 045186            2 ECLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSL---PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLE   77 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~l---p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~   77 (411)
                      ++|++|+|++|.++.+|.. ++++++|++|+|++| .+..+   |..+..+++|++|+|++| .+..+|..+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence            4799999999999999876 789999999999996 45443   566778999999999995 57788888999999999


Q ss_pred             EEccCCCCCccCh--hhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEec
Q 045186           78 LYLDGTSITEVPS--SIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE  153 (411)
Q Consensus        78 L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~  153 (411)
                      |++++|.++.++.  .+..+++|+.|++++|..  ..+..+..+++|+.|++++|.+.+    ..+|..+..+++|+.|+
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG----GEECSCCTTCTTCCEEE
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc----ccchhHHhhCcCCCEEE
Confidence            9999999997774  789999999999999983  344558889999999999998863    12678899999999999


Q ss_pred             ccCccccccc-CCC---CCCCceEEecCCC
Q 045186          154 LEDCKRLQSL-PQI---PPNLWLVRANGCS  179 (411)
Q Consensus       154 L~~c~~l~~l-p~l---~~~L~~L~~~~c~  179 (411)
                      +++|. ++.+ |..   .++|+.|+++++.
T Consensus       182 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          182 LSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             CTTSC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCC-cCCcCHHHhcCCCCCCEEECCCCc
Confidence            99986 4444 432   2689999998874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.71  E-value=1.4e-17  Score=173.75  Aligned_cols=179  Identities=15%  Similarity=0.044  Sum_probs=144.3

Q ss_pred             CCceeEEEEeCCCCCcc---cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCc
Q 045186            1 MECLRELLLDGTDIKEL---PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLL   76 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~l---p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~   76 (411)
                      +++|++|++++|.++.+   |..+..+++|++|+|++| .+..+|..+..+++|+.|++++|...+..| ..++.+++|+
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred             CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence            47899999999988865   677899999999999986 477788888899999999999976555555 5788899999


Q ss_pred             EEEccCCCCC-ccChhhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEe
Q 045186           77 ELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKEL  152 (411)
Q Consensus        77 ~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L  152 (411)
                      .|++++|.++ ..|..++.+++|+.|++++|...   .+..++.+++|+.|+|++|.+++     ..|..+..+++|+.|
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L  502 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-----ISWGVFDTLHRLQLL  502 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEE
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-----cChhhhcccccCCEE
Confidence            9999999998 56777899999999999998732   34558889999999999999888     235678899999999


Q ss_pred             cccCcccccccCCC---CCCCceEEecCCCCCCcccC
Q 045186          153 ELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       153 ~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~  186 (411)
                      +|++|+.....|..   .++|+.|++++|. ++.+|.
T Consensus       503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~  538 (606)
T 3vq2_A          503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG  538 (606)
T ss_dssp             ECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred             ECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence            99998654444542   2678999998885 666664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.71  E-value=2.4e-17  Score=158.18  Aligned_cols=178  Identities=17%  Similarity=0.166  Sum_probs=143.5

Q ss_pred             CCceeEEEEeCCCCC-cccccc--cCCCCccEEEEecCCCCcccccccCCC-----CCccEEEeeCCCCCcccchhccCC
Q 045186            1 MECLRELLLDGTDIK-ELPVSI--ELLSGLVQLSLKGCKNLLSLPIAISSL-----KCLRNLKLSGCSKLKKFPQIVASM   72 (411)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si--~~l~~L~~L~L~~c~~l~~lp~~i~~l-----~~L~~L~Ls~c~~l~~lp~~l~~l   72 (411)
                      +++|++|+|++|.++ .+|..+  +.+++|++|+|++| .+..+|..+..+     ++|++|+|++|...+..|..++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            468999999999998 678876  89999999999996 556557767666     899999999976555555889999


Q ss_pred             CCCcEEEccCCCCCc---cChhh--hccCCCCEEecCCCCCCh-h----HHHhhccccceeecCCCCccccccccccc--
Q 045186           73 EDLLELYLDGTSITE---VPSSI--ELLHGLELLNLNNCKNLW-T----TIIYIMAFARSFQFDGKEFISCSFDVVFS--  140 (411)
Q Consensus        73 ~~L~~L~L~~~~i~~---lp~~i--~~l~~L~~L~L~~~~~~~-~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp--  140 (411)
                      ++|++|++++|.+..   +|..+  +.+++|+.|++++|.... +    ..+..+++|+.|+|++|.+.+      .+  
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~  246 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD------AAGA  246 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS------SCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc------ccch
Confidence            999999999999763   45555  889999999999998432 1    235678999999999999988      54  


Q ss_pred             hhhhcCCCCCEecccCcccccccCC-CCCCCceEEecCCCCCCcccCC
Q 045186          141 VSISGLLNLKELELEDCKRLQSLPQ-IPPNLWLVRANGCSSLVTLSGA  187 (411)
Q Consensus       141 ~~l~~l~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c~~L~~l~~~  187 (411)
                      ..+..+++|+.|++++|. ++.+|. ++++|++|+++++ .++.+|.+
T Consensus       247 ~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~p~~  292 (312)
T 1wwl_A          247 PSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRNPSP  292 (312)
T ss_dssp             SCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSCCCT
T ss_pred             hhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCChhH
Confidence            355678999999999976 567775 4478999999886 45655543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=8.1e-17  Score=149.57  Aligned_cols=151  Identities=20%  Similarity=0.230  Sum_probs=128.5

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~   79 (411)
                      ++|++|+|++|.+..++. .++++++|++|+|++|......|..+..+++|++|+|++|. +..+| ..++.+++|++|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEE
Confidence            468999999999997765 59999999999999975444445567899999999999965 55555 5678999999999


Q ss_pred             ccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEeccc
Q 045186           80 LDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELE  155 (411)
Q Consensus        80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~  155 (411)
                      |++|.++.+|.. +..+++|+.|+|++|.  ...+..++.+++|+.|+|++|.+.+      +|. .+..+++|+.|+|+
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS------VPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECC
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc------cCHHHHhCCCCCCEEEee
Confidence            999999988876 5889999999999998  3344458899999999999999999      774 68899999999999


Q ss_pred             Cccc
Q 045186          156 DCKR  159 (411)
Q Consensus       156 ~c~~  159 (411)
                      +|+.
T Consensus       188 ~N~~  191 (251)
T 3m19_A          188 GNQF  191 (251)
T ss_dssp             SCCB
T ss_pred             CCce
Confidence            9873

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.70  E-value=2.4e-16  Score=152.04  Aligned_cols=145  Identities=23%  Similarity=0.207  Sum_probs=68.1

Q ss_pred             ceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            3 CLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      +|++|+|++|.|+.++. .++++++|++|+|++|......|..+..+++|++|++++| .++.+|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECC
Confidence            44555555555554443 3455555555555553222222444555555555555552 3444444332  445555555


Q ss_pred             CCCCCccCh-hhhccCCCCEEecCCCCC----ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186           82 GTSITEVPS-SIELLHGLELLNLNNCKN----LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED  156 (411)
Q Consensus        82 ~~~i~~lp~-~i~~l~~L~~L~L~~~~~----~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~  156 (411)
                      +|.++.++. .+..+++|+.|++++|..    .....+..+++|+.|++++|.+..      +|..+.  ++|+.|++++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~------l~~~~~--~~L~~L~l~~  201 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLP--PSLTELHLDG  201 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS------CCSSCC--TTCSEEECTT
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc------CCcccc--ccCCEEECCC
Confidence            555554433 244555555555555542    122334455555555555555554      443332  4555555555


Q ss_pred             cc
Q 045186          157 CK  158 (411)
Q Consensus       157 c~  158 (411)
                      |.
T Consensus       202 n~  203 (330)
T 1xku_A          202 NK  203 (330)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.2e-16  Score=150.02  Aligned_cols=169  Identities=21%  Similarity=0.332  Sum_probs=140.3

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L   78 (411)
                      ++|++|+|++|.|+.++. .++++++|++|+|++| .+..+|.. +..+++|++|+|++|. +..+| ..+..+++|+.|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence            469999999999998875 6999999999999995 56677765 4789999999999964 55665 456889999999


Q ss_pred             EccCCCCCccCh-hhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecc
Q 045186           79 YLDGTSITEVPS-SIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELEL  154 (411)
Q Consensus        79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L  154 (411)
                      ++++|.++.+|. .++.+++|+.|++++|.  ......+..+++|+.|+|++|.+..      +|. .+..+++|+.|+|
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR------VPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEEC
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE------eChhHhccCCCcCEEEC
Confidence            999999997765 47899999999999997  3334458899999999999999999      875 4788999999999


Q ss_pred             cCcccccccCCC----CCCCceEEecCCC
Q 045186          155 EDCKRLQSLPQI----PPNLWLVRANGCS  179 (411)
Q Consensus       155 ~~c~~l~~lp~l----~~~L~~L~~~~c~  179 (411)
                      ++| .++.+|.-    .++|+.|++.+++
T Consensus       189 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          189 DNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            997 46666542    2678888887754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=1e-16  Score=150.78  Aligned_cols=143  Identities=21%  Similarity=0.192  Sum_probs=89.1

Q ss_pred             EEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCCC
Q 045186            8 LLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTSI   85 (411)
Q Consensus         8 ~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i   85 (411)
                      +..+..+..+|..+.  ++|++|+|++| .+..++. .+..+++|++|++++|. +..++ ..++.+++|++|++++|.+
T Consensus        13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           13 QCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             ECTTSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EecCCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCcc
Confidence            334445666666443  46777777764 4444443 56667777777777753 44443 3566677777777777777


Q ss_pred             CccC-hhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186           86 TEVP-SSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus        86 ~~lp-~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      +.++ ..+..+++|+.|++++|..  .....++.+++|++|++++|.+..    ..+|..+..+++|+.|++++|.
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCSSC
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce----ecCchhhccCCCCCEEECCCCC
Confidence            7554 4566777777777777662  222236667777777777777654    0135667777777777777764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.70  E-value=6.9e-17  Score=154.99  Aligned_cols=178  Identities=15%  Similarity=0.170  Sum_probs=137.8

Q ss_pred             eeEEEEeCCCCC--ccccccc-------CCCCccEEEEecCCCCccccccc--CCCCCccEEEeeCCCCCcccchhccCC
Q 045186            4 LRELLLDGTDIK--ELPVSIE-------LLSGLVQLSLKGCKNLLSLPIAI--SSLKCLRNLKLSGCSKLKKFPQIVASM   72 (411)
Q Consensus         4 L~~L~L~~~~l~--~lp~si~-------~l~~L~~L~L~~c~~l~~lp~~i--~~l~~L~~L~Ls~c~~l~~lp~~l~~l   72 (411)
                      |++|+|++|.+.  .+|..+.       ++++|++|+|++|...+.+|..+  ..+++|++|+|++|. +..+|..++.+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence            667888888875  4666555       79999999999986666788876  899999999999965 55558777766


Q ss_pred             -----CCCcEEEccCCCCCccC-hhhhccCCCCEEecCCCCCChh----HH--HhhccccceeecCCCCccccccccccc
Q 045186           73 -----EDLLELYLDGTSITEVP-SSIELLHGLELLNLNNCKNLWT----TI--IYIMAFARSFQFDGKEFISCSFDVVFS  140 (411)
Q Consensus        73 -----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~----~~--l~~l~~L~~L~Ls~n~~~~~~~~~~lp  140 (411)
                           ++|++|+|++|.++.++ ..++.+++|+.|++++|.....    ..  ++.+++|++|+|++|.+..   ...++
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~  220 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET---PSGVC  220 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC---HHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc---hHHHH
Confidence                 99999999999999776 7899999999999999984321    22  3889999999999999985   00033


Q ss_pred             hh-hhcCCCCCEecccCcccccccC--CC--CCCCceEEecCCCCCCcccC
Q 045186          141 VS-ISGLLNLKELELEDCKRLQSLP--QI--PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       141 ~~-l~~l~~L~~L~L~~c~~l~~lp--~l--~~~L~~L~~~~c~~L~~l~~  186 (411)
                      .. +..+++|+.|++++|......|  ..  .++|+.|+++++. ++.+|.
T Consensus       221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~  270 (312)
T 1wwl_A          221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK  270 (312)
T ss_dssp             HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS
T ss_pred             HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhh
Confidence            22 3578999999999986444332  22  3789999998874 555553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.70  E-value=1.6e-16  Score=160.25  Aligned_cols=170  Identities=20%  Similarity=0.171  Sum_probs=140.1

Q ss_pred             CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~   79 (411)
                      ++|++|+|++|.|+.+ |..|+++++|++|+|++|......|..+.++++|++|+|++|. +..+|. .++.+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence            4799999999999977 5569999999999999974443445778899999999999964 666664 588899999999


Q ss_pred             ccCCCCCccCh-hhhccCCCCEEecCCCCCCh---hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186           80 LDGTSITEVPS-SIELLHGLELLNLNNCKNLW---TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE  155 (411)
Q Consensus        80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~---~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~  155 (411)
                      |++|.++.+|. .+..+++|+.|++++|..+.   ...+..+++|+.|+|++|++..      +| .+..+++|+.|+|+
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------~~-~~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD------MP-NLTPLVGLEELEMS  226 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS------CC-CCTTCTTCCEEECT
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc------cc-cccccccccEEECc
Confidence            99999998876 68899999999999976332   3458899999999999999999      87 58899999999999


Q ss_pred             CcccccccCCC---CCCCceEEecCCC
Q 045186          156 DCKRLQSLPQI---PPNLWLVRANGCS  179 (411)
Q Consensus       156 ~c~~l~~lp~l---~~~L~~L~~~~c~  179 (411)
                      +|......|..   .++|+.|++.++.
T Consensus       227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          227 GNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             TSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             CCcCcccCcccccCccCCCEEEeCCCc
Confidence            98643333321   3688999998764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=161.19  Aligned_cols=150  Identities=21%  Similarity=0.192  Sum_probs=98.8

Q ss_pred             CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~   79 (411)
                      ++|++|+|++|.|+.++ ..|.++++|++|+|++|......|..+.++++|++|+|++| .+..+|. .++++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence            36777888888877664 45777888888888775433333666777778888888774 4555554 456777777777


Q ss_pred             ccCCCCCcc-ChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEeccc
Q 045186           80 LDGTSITEV-PSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELE  155 (411)
Q Consensus        80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~  155 (411)
                      |++|.++.+ |..+..+++|+.|++++|..  ..+..+..+++|+.|+|++|.+..      +|. .+..+++|+.|+++
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS------IPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS------CCHHHHTTCTTCCEEEEE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc------cChhHhcccCCCcEEeCC
Confidence            777777744 45567777777777777652  223346666677777777766666      542 35556666666666


Q ss_pred             Ccc
Q 045186          156 DCK  158 (411)
Q Consensus       156 ~c~  158 (411)
                      +|.
T Consensus       185 ~n~  187 (477)
T 2id5_A          185 HLN  187 (477)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.70  E-value=6e-17  Score=157.90  Aligned_cols=148  Identities=20%  Similarity=0.203  Sum_probs=73.6

Q ss_pred             CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccch--hccCCCCCcE
Q 045186            2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQ--IVASMEDLLE   77 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~   77 (411)
                      ++|++|+|++|.++.++ ..++++++|++|+|++| .+..+|.. +..+++|++|++++| .+..+|.  .++.+++|++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQI  153 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcE
Confidence            45666666666665543 33556666666666653 34444433 455555555555553 3444443  4455555555


Q ss_pred             EEccCC-CCCcc-ChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhh-hcCCCCCEe
Q 045186           78 LYLDGT-SITEV-PSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSI-SGLLNLKEL  152 (411)
Q Consensus        78 L~L~~~-~i~~l-p~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l-~~l~~L~~L  152 (411)
                      |++++| .++.+ |..++.+++|+.|++++|..  ..+..+..+++|++|++++|.+..      +|..+ ..+++|+.|
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~~~~L~~L  227 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL------LLEIFVDVTSSVECL  227 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT------HHHHHHHHTTTEEEE
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc------chhhhhhhcccccEE
Confidence            555555 34433 23455555555555555541  112334445555555555555444      44322 234445555


Q ss_pred             cccCc
Q 045186          153 ELEDC  157 (411)
Q Consensus       153 ~L~~c  157 (411)
                      ++++|
T Consensus       228 ~L~~n  232 (353)
T 2z80_A          228 ELRDT  232 (353)
T ss_dssp             EEESC
T ss_pred             ECCCC
Confidence            55444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=3.1e-16  Score=157.54  Aligned_cols=168  Identities=22%  Similarity=0.265  Sum_probs=138.3

Q ss_pred             CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L   78 (411)
                      ++++.|+|++|.|+.++ ..|.++++|++|+|++|. +..+ +..+.++++|++|+|++| .+..+|. .+..+++|+.|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence            46899999999999775 569999999999999964 5554 467889999999999995 5666765 68899999999


Q ss_pred             EccCCCCCccCh-hhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecc
Q 045186           79 YLDGTSITEVPS-SIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELEL  154 (411)
Q Consensus        79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L  154 (411)
                      +|++|.++.+|. .+..+++|+.|++++|...   ....+..+++|+.|+|++|+++.      +| .+..+++|+.|+|
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------~~-~~~~l~~L~~L~L  214 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE------IP-NLTPLIKLDELDL  214 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS------CC-CCTTCSSCCEEEC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc------cc-ccCCCcccCEEEC
Confidence            999999997776 6889999999999997633   23458889999999999999998      88 5889999999999


Q ss_pred             cCccccccc-CCC---CCCCceEEecCCC
Q 045186          155 EDCKRLQSL-PQI---PPNLWLVRANGCS  179 (411)
Q Consensus       155 ~~c~~l~~l-p~l---~~~L~~L~~~~c~  179 (411)
                      ++|. +..+ |..   .++|+.|++.++.
T Consensus       215 s~N~-l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          215 SGNH-LSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             TTSC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CCCc-cCccChhhhccCccCCEEECCCCc
Confidence            9985 5544 322   2678888887763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.69  E-value=1.6e-16  Score=156.89  Aligned_cols=176  Identities=14%  Similarity=0.148  Sum_probs=117.5

Q ss_pred             CCceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEE
Q 045186            1 MECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L   78 (411)
                      +++|++|+|++|.++.++. .++.+++|++|+|++|......|..+..+++|++|+|++| .+..+|.. ++++++|++|
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEE
Confidence            3567777777777766654 5667777777777765433233444566677777777764 44555544 3566666666


Q ss_pred             EccCCCCCccC-hhhhccCCCCEEecCCCCC-------------------------------------------------
Q 045186           79 YLDGTSITEVP-SSIELLHGLELLNLNNCKN-------------------------------------------------  108 (411)
Q Consensus        79 ~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~-------------------------------------------------  108 (411)
                      ++++|.++.++ ..++.+++|+.|++++|..                                                 
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~  226 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV  226 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence            66666666443 3355666666666665541                                                 


Q ss_pred             ------------ChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEecccCcccccccCCC---CCCCce
Q 045186          109 ------------LWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELELEDCKRLQSLPQI---PPNLWL  172 (411)
Q Consensus       109 ------------~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~  172 (411)
                                  .....+..+++|+.|++++|.+.+      + |..+..+++|+.|++++|. ++.+|..   .++|+.
T Consensus       227 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~  299 (390)
T 3o6n_A          227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKV  299 (390)
T ss_dssp             SCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCE
T ss_pred             cccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC------cChhHccccccCCEEECCCCc-CcccCcccCCCCCCCE
Confidence                        111336678899999999999988      5 6788999999999999975 5666543   378999


Q ss_pred             EEecCCCCCCccc
Q 045186          173 VRANGCSSLVTLS  185 (411)
Q Consensus       173 L~~~~c~~L~~l~  185 (411)
                      |++++| .++.++
T Consensus       300 L~L~~n-~l~~~~  311 (390)
T 3o6n_A          300 LDLSHN-HLLHVE  311 (390)
T ss_dssp             EECCSS-CCCCCG
T ss_pred             EECCCC-cceecC
Confidence            999988 455554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=1.4e-16  Score=151.38  Aligned_cols=168  Identities=20%  Similarity=0.252  Sum_probs=142.9

Q ss_pred             CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      ++|++|+|++|.|+.++ ..+.++++|++|+|++| .+..+|.. ..+++|++|+|++| .+..+|..+..+++|+.|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence            57899999999999774 56999999999999995 67777764 78999999999994 67899998999999999999


Q ss_pred             cCCCCCccC-hhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccC
Q 045186           81 DGTSITEVP-SSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELED  156 (411)
Q Consensus        81 ~~~~i~~lp-~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~  156 (411)
                      ++|.++.+| ..+..+++|+.|++++|.  ......+..+++|+.|+|++|+++.      +|.. +..+++|+.|+|++
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~l~~L~~L~L~~  181 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE------LPAGLLNGLENLDTLLLQE  181 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC------CCTTTTTTCTTCCEEECCS
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc------cCHHHhcCcCCCCEEECCC
Confidence            999999887 468999999999999998  3444558899999999999999999      8865 57899999999999


Q ss_pred             cccccccCCCC---CCCceEEecCCC
Q 045186          157 CKRLQSLPQIP---PNLWLVRANGCS  179 (411)
Q Consensus       157 c~~l~~lp~l~---~~L~~L~~~~c~  179 (411)
                      |. ++.+|...   .+|+.|++.+++
T Consensus       182 N~-l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          182 NS-LYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             SC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             Cc-CCccChhhcccccCCeEEeCCCC
Confidence            75 66776532   467778777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=2.6e-17  Score=160.43  Aligned_cols=169  Identities=18%  Similarity=0.224  Sum_probs=137.8

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L   78 (411)
                      ++|++|+|++|.|+.+|. .++++++|++|+|++| .+..+ |..+..+++|++|++++| .+..+|.. ++++++|++|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEE
Confidence            478999999999998876 6899999999999986 45554 566888999999999995 56667655 7889999999


Q ss_pred             EccCCCCCccCh--hhhccCCCCEEecCCCC---CChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEe
Q 045186           79 YLDGTSITEVPS--SIELLHGLELLNLNNCK---NLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKEL  152 (411)
Q Consensus        79 ~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L  152 (411)
                      ++++|.++.+|.  .+..+++|+.|++++|.   ...+..+..+++|+.|++++|.+.+      + |..+..+++|+.|
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~l~~l~~L~~L  203 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS------YEPKSLKSIQNVSHL  203 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE------ECTTTTTTCSEEEEE
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc------cCHHHHhccccCCee
Confidence            999999998887  68889999999999984   2223458889999999999999888      5 6788899999999


Q ss_pred             cccCcccccccCC----CCCCCceEEecCCC
Q 045186          153 ELEDCKRLQSLPQ----IPPNLWLVRANGCS  179 (411)
Q Consensus       153 ~L~~c~~l~~lp~----l~~~L~~L~~~~c~  179 (411)
                      ++++|. ++.+|.    ..++|+.|+++++.
T Consensus       204 ~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          204 ILHMKQ-HILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             EEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred             cCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence            999876 455554    24788999998863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.68  E-value=5.3e-16  Score=153.17  Aligned_cols=167  Identities=13%  Similarity=0.189  Sum_probs=137.3

Q ss_pred             CCceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            1 MECLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      +++|+.|+++++.++.+|.. +..+++|++|+|++|. +..++ ..+..+++|++|+|++|......|..++++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            36899999999999999876 6889999999999964 55554 478899999999999976544445678999999999


Q ss_pred             EccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186           79 YLDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE  155 (411)
Q Consensus        79 ~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~  155 (411)
                      ++++|.++.+|.. ++.+++|+.|++++|.  ...+..+..+++|+.|++++|.++.      ++  +..+++|+.|+++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~--~~~l~~L~~L~l~  194 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH------VD--LSLIPSLFHANVS  194 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB------CC--GGGCTTCSEEECC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc------cc--cccccccceeecc
Confidence            9999999999987 4899999999999997  3334558899999999999999988      65  5678888888888


Q ss_pred             CcccccccCCCCCCCceEEecCC
Q 045186          156 DCKRLQSLPQIPPNLWLVRANGC  178 (411)
Q Consensus       156 ~c~~l~~lp~l~~~L~~L~~~~c  178 (411)
                      +|. +..++ .+++|+.|++.++
T Consensus       195 ~n~-l~~~~-~~~~L~~L~l~~n  215 (390)
T 3o6n_A          195 YNL-LSTLA-IPIAVEELDASHN  215 (390)
T ss_dssp             SSC-CSEEE-CCSSCSEEECCSS
T ss_pred             ccc-ccccC-CCCcceEEECCCC
Confidence            864 44443 3456777777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.68  E-value=3.9e-16  Score=150.83  Aligned_cols=166  Identities=18%  Similarity=0.286  Sum_probs=89.1

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      +|+.++++++.++.+|..+.  ++|++|+|++|. +..+ |..+.++++|++|++++|......|..++++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            35566666666666665442  466666666643 3333 3355666666666666644333335556666666666666


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKR  159 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~  159 (411)
                      +|.++.+|..+.  ++|+.|++++|.  ......+..+++|+.|++++|.+..   .+..|..+..+ +|+.|++++|. 
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~l-~L~~L~l~~n~-  183 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---SGFEPGAFDGL-KLNYLRISEAK-  183 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---GGSCTTSSCSC-CCSCCBCCSSB-
T ss_pred             CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---CCCCcccccCC-ccCEEECcCCC-
Confidence            666666665544  566666666665  2222335566666666666665542   00123344444 56666666543 


Q ss_pred             ccccCC-CCCCCceEEecCC
Q 045186          160 LQSLPQ-IPPNLWLVRANGC  178 (411)
Q Consensus       160 l~~lp~-l~~~L~~L~~~~c  178 (411)
                      ++.+|. ++++|++|+++++
T Consensus       184 l~~l~~~~~~~L~~L~l~~n  203 (332)
T 2ft3_A          184 LTGIPKDLPETLNELHLDHN  203 (332)
T ss_dssp             CSSCCSSSCSSCSCCBCCSS
T ss_pred             CCccCccccCCCCEEECCCC
Confidence            333432 2345555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.68  E-value=2.7e-16  Score=163.88  Aligned_cols=172  Identities=15%  Similarity=0.090  Sum_probs=135.3

Q ss_pred             CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++++|+|++|.|+.+ |..|+++++|++|+|++|......|..+.++++|++|+|++|......|..++++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            4689999999999977 557999999999999997555555788999999999999997666666788999999999999


Q ss_pred             cCCCCCcc-ChhhhccCCCCEEecCCCCCCh--hHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCC--Eecc
Q 045186           81 DGTSITEV-PSSIELLHGLELLNLNNCKNLW--TTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLK--ELEL  154 (411)
Q Consensus        81 ~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~--~L~L  154 (411)
                      ++|.++.+ |..++.+++|++|++++|....  ...+..+++|+.|++++|.+..      + |..++.+++|+  .|++
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY------LSKEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE------ECHHHHHTTTTCCSEEEEC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc------cChhhhhhhcccceeEEec
Confidence            99999976 5678999999999999998332  2334448999999999999888      6 56788889998  8888


Q ss_pred             cCcccccccCCCC--CCCceEEecCCC
Q 045186          155 EDCKRLQSLPQIP--PNLWLVRANGCS  179 (411)
Q Consensus       155 ~~c~~l~~lp~l~--~~L~~L~~~~c~  179 (411)
                      ++|......|...  ..|+.|++.+|.
T Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~  213 (606)
T 3t6q_A          187 NGNDIAGIEPGAFDSAVFQSLNFGGTQ  213 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred             CCCccCccChhHhhhccccccccCCch
Confidence            8876444333322  345566655553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.68  E-value=7.3e-16  Score=149.46  Aligned_cols=166  Identities=17%  Similarity=0.220  Sum_probs=141.4

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|++++|.++.++. +..+++|++|++++| .+..+| .+..+++|++|++++| .+..+|. +..+++|+.|++
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l  139 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNL  139 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEEC
T ss_pred             cCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEEC
Confidence            5789999999999999988 999999999999996 677776 4889999999999995 4666766 889999999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL  160 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l  160 (411)
                      ++|.....+..+..+++|+.|++++|.......+..+++|+.|++++|.+..      ++. +..+++|+.|++++|. +
T Consensus       140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~-~~~l~~L~~L~l~~n~-l  211 (347)
T 4fmz_A          140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED------ISP-LASLTSLHYFTAYVNQ-I  211 (347)
T ss_dssp             TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC------CGG-GGGCTTCCEEECCSSC-C
T ss_pred             CCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc------ccc-ccCCCccceeecccCC-C
Confidence            9996665555699999999999999985544448999999999999999998      875 8899999999999975 4


Q ss_pred             cccCCC--CCCCceEEecCCC
Q 045186          161 QSLPQI--PPNLWLVRANGCS  179 (411)
Q Consensus       161 ~~lp~l--~~~L~~L~~~~c~  179 (411)
                      ..++.+  .++|+.|++++|.
T Consensus       212 ~~~~~~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          212 TDITPVANMTRLNSLKIGNNK  232 (347)
T ss_dssp             CCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCchhhcCCcCCEEEccCCc
Confidence            444433  3789999998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.68  E-value=3.5e-16  Score=150.92  Aligned_cols=173  Identities=18%  Similarity=0.276  Sum_probs=125.6

Q ss_pred             CCceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            1 MECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      +++|++|+|++|.++.+ |..++++++|++|+|++| .++.+|..+.  ++|++|++++|......+..++++++|+.|+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence            57899999999999977 777999999999999995 5778887654  7899999998654444445678888899999


Q ss_pred             ccCCCCC---ccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEeccc
Q 045186           80 LDGTSIT---EVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELELE  155 (411)
Q Consensus        80 L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L~  155 (411)
                      +++|.++   ..+..+..+++|+.|++++|...... ....++|+.|++++|.+..      + |..+..+++|+.|+++
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls  224 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QGLPPSLTELHLDGNKITK------VDAASLKGLNNLAKLGLS  224 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SSCCTTCSEEECTTSCCCE------ECTGGGTTCTTCCEEECC
T ss_pred             CCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-ccccccCCEEECCCCcCCc------cCHHHhcCCCCCCEEECC
Confidence            9888886   44567788888888888888622110 1112678888888887777      5 4567777888888887


Q ss_pred             CcccccccCC--C--CCCCceEEecCCCCCCccc
Q 045186          156 DCKRLQSLPQ--I--PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       156 ~c~~l~~lp~--l--~~~L~~L~~~~c~~L~~l~  185 (411)
                      +|. ++.++.  +  .++|+.|++++| .+..++
T Consensus       225 ~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp  256 (330)
T 1xku_A          225 FNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVP  256 (330)
T ss_dssp             SSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCC
T ss_pred             CCc-CceeChhhccCCCCCCEEECCCC-cCccCC
Confidence            765 333332  1  256777777776 344444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=1.4e-16  Score=166.27  Aligned_cols=165  Identities=22%  Similarity=0.326  Sum_probs=139.4

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      |++|+.|++++|.|..+|. ++.+++|+.|+|++| .+..+|. +..+++|+.|+|++| .+..+| .++.+++|+.|+|
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence            4678999999999998874 899999999999996 5666766 889999999999996 566666 6888999999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL  160 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l  160 (411)
                      ++|.+..++ .+..+++|+.|+|++|.......+..+++|+.|+|++|.+..      ++. +..+++|+.|+|++|. +
T Consensus       117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~------~~~-l~~l~~L~~L~Ls~N~-i  187 (605)
T 1m9s_A          117 EHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------IVP-LAGLTKLQNLYLSKNH-I  187 (605)
T ss_dssp             TTSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC------CGG-GTTCTTCCEEECCSSC-C
T ss_pred             cCCCCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC------chh-hccCCCCCEEECcCCC-C
Confidence            999999875 588999999999999985444668899999999999999998      765 8999999999999974 5


Q ss_pred             cccCCCC--CCCceEEecCCC
Q 045186          161 QSLPQIP--PNLWLVRANGCS  179 (411)
Q Consensus       161 ~~lp~l~--~~L~~L~~~~c~  179 (411)
                      ..+|.+.  ++|+.|++.+|.
T Consensus       188 ~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          188 SDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CBCGGGTTCTTCSEEECCSEE
T ss_pred             CCChHHccCCCCCEEEccCCc
Confidence            6666543  678888888763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=4.2e-17  Score=157.40  Aligned_cols=174  Identities=17%  Similarity=0.170  Sum_probs=108.3

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcc-cccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLS-LPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      ++++.|++++|.+...+..+..+++|++|+|++|..... +|..+..+++|++|+|++|......|..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            456777777776665555566677777777777643222 5666667777777777776544456666667777777777


Q ss_pred             cCC-CCC--ccChhhhccCCCCEEecCCCCCCh----hHHHhhcc-ccceeecCCCC--ccccccccccchhhhcCCCCC
Q 045186           81 DGT-SIT--EVPSSIELLHGLELLNLNNCKNLW----TTIIYIMA-FARSFQFDGKE--FISCSFDVVFSVSISGLLNLK  150 (411)
Q Consensus        81 ~~~-~i~--~lp~~i~~l~~L~~L~L~~~~~~~----~~~l~~l~-~L~~L~Ls~n~--~~~~~~~~~lp~~l~~l~~L~  150 (411)
                      ++| .++  .++..+..+++|+.|++++|..+.    ...+..++ +|++|++++|.  ++.    ..+|..+..+++|+
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~----~~l~~~~~~~~~L~  225 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK----SDLSTLVRRCPNLV  225 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH----HHHHHHHHHCTTCS
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH----HHHHHHHhhCCCCC
Confidence            777 566  356666677777777777773222    23366667 77777777773  321    12566666677777


Q ss_pred             EecccCcccccc--cCCC--CCCCceEEecCCC
Q 045186          151 ELELEDCKRLQS--LPQI--PPNLWLVRANGCS  179 (411)
Q Consensus       151 ~L~L~~c~~l~~--lp~l--~~~L~~L~~~~c~  179 (411)
                      .|++++|..++.  ++.+  .++|+.|++++|.
T Consensus       226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            777777664332  1111  1567777777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.67  E-value=2.9e-16  Score=159.06  Aligned_cols=177  Identities=20%  Similarity=0.266  Sum_probs=147.6

Q ss_pred             CCceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            1 MECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      +++|++|+|++|.|+.+ |..|+++++|++|+|++| .+..+|. .+.++++|++|+|++|......|..+..+++|+.|
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            57899999999999977 667999999999999995 5677765 46789999999999976666667788999999999


Q ss_pred             EccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecc
Q 045186           79 YLDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELEL  154 (411)
Q Consensus        79 ~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L  154 (411)
                      ++++|.++.+ |..+..+++|+.|++++|.  ......+..+++|+.|+|++|.+..      ++ ..+..+++|+.|++
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~------~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA------IRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE------ECTTCSCSCTTCCEEEE
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE------eChhhcccCcccceeeC
Confidence            9999999955 5578899999999999997  3445568999999999999999988      65 46888999999999


Q ss_pred             cCcccccccCCC---CCCCceEEecCCCCCCccc
Q 045186          155 EDCKRLQSLPQI---PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       155 ~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~  185 (411)
                      ++|..+..+|..   ..+|+.|++++|. ++.++
T Consensus       208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~  240 (477)
T 2id5_A          208 SHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVP  240 (477)
T ss_dssp             ECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCC
T ss_pred             CCCccccccCcccccCccccEEECcCCc-ccccC
Confidence            999988888753   2589999998763 44443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.67  E-value=2.8e-16  Score=150.54  Aligned_cols=170  Identities=16%  Similarity=0.123  Sum_probs=115.9

Q ss_pred             CceeEEEEeCCCCC-cccccc--cCCCCccEEEEecCCCCcccc----cccCCCCCccEEEeeCCCCCcccchhccCCCC
Q 045186            2 ECLRELLLDGTDIK-ELPVSI--ELLSGLVQLSLKGCKNLLSLP----IAISSLKCLRNLKLSGCSKLKKFPQIVASMED   74 (411)
Q Consensus         2 ~~L~~L~L~~~~l~-~lp~si--~~l~~L~~L~L~~c~~l~~lp----~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~   74 (411)
                      ++|++|+|++|.+. ..|..+  +.+++|++|+|++|......|    ..+..+++|++|+|++|......|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            45788888888877 445555  778888888888865443322    23446778888888886654445567777888


Q ss_pred             CcEEEccCCCCCc---cCh--hhhccCCCCEEecCCCCCCh-hH----HHhhccccceeecCCCCcccccccccc-chhh
Q 045186           75 LLELYLDGTSITE---VPS--SIELLHGLELLNLNNCKNLW-TT----IIYIMAFARSFQFDGKEFISCSFDVVF-SVSI  143 (411)
Q Consensus        75 L~~L~L~~~~i~~---lp~--~i~~l~~L~~L~L~~~~~~~-~~----~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l  143 (411)
                      |++|+|++|.+..   ++.  .++.+++|+.|++++|.... +.    .++.+++|++|+|++|.+.+      + |..+
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~------~~p~~~  244 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA------TVNPSA  244 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC------CCCSCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc------cchhhH
Confidence            8888888887653   322  23677888888888887432 22    25677888888888888877      5 6666


Q ss_pred             hcC---CCCCEecccCcccccccCC-CCCCCceEEecCC
Q 045186          144 SGL---LNLKELELEDCKRLQSLPQ-IPPNLWLVRANGC  178 (411)
Q Consensus       144 ~~l---~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c  178 (411)
                      ..+   ++|+.|+|++|. ++.+|. ++++|+.|+++++
T Consensus       245 ~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N  282 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN  282 (310)
T ss_dssp             SSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC
T ss_pred             HhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC
Confidence            555   588888888765 446654 4567777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=3.7e-16  Score=163.18  Aligned_cols=176  Identities=19%  Similarity=0.175  Sum_probs=135.7

Q ss_pred             CCceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            1 MECLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      +++|++|+|++|.|+.+|+. ++++++|++|+|++| .+..+|.. +..+++|++|+|++|...+..|..++.+++|+.|
T Consensus        98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  176 (597)
T 3oja_B           98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  176 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence            46788888888888877654 688888888888885 56666665 4778888888888865545455567778888888


Q ss_pred             EccCCCCCccC------------------------------------------------------------hhhhccCCC
Q 045186           79 YLDGTSITEVP------------------------------------------------------------SSIELLHGL   98 (411)
Q Consensus        79 ~L~~~~i~~lp------------------------------------------------------------~~i~~l~~L   98 (411)
                      +|++|.++.++                                                            ..++.+++|
T Consensus       177 ~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L  256 (597)
T 3oja_B          177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL  256 (597)
T ss_dssp             ECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             ECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCC
Confidence            88877766432                                                            236677889


Q ss_pred             CEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCC---CCCCceE
Q 045186           99 ELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI---PPNLWLV  173 (411)
Q Consensus        99 ~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L  173 (411)
                      +.|+|++|..  ..+..++.+++|+.|+|++|.+++      +|..+..+++|+.|+|++|. +..+|..   .++|+.|
T Consensus       257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA------LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENL  329 (597)
T ss_dssp             SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE------EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEE
T ss_pred             CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC------CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEE
Confidence            9999999873  345668999999999999999999      99888889999999999985 5566642   2789999


Q ss_pred             EecCCCCCCccc
Q 045186          174 RANGCSSLVTLS  185 (411)
Q Consensus       174 ~~~~c~~L~~l~  185 (411)
                      ++++|. +..++
T Consensus       330 ~L~~N~-l~~~~  340 (597)
T 3oja_B          330 YLDHNS-IVTLK  340 (597)
T ss_dssp             ECCSSC-CCCCC
T ss_pred             ECCCCC-CCCcC
Confidence            999875 44444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.67  E-value=3.1e-16  Score=157.61  Aligned_cols=151  Identities=19%  Similarity=0.143  Sum_probs=115.6

Q ss_pred             CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      ++|++|+|++|.|+.+ |..++++++|++|+|++|.....+ |..+..+++|++|+|++|...+..|..++++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            5789999999999876 667899999999999997665555 45688899999999999765555678888999999999


Q ss_pred             ccCCCCCc-cChh--hhccCCCCEEecCCCCC--Chh-HHHhhccccceeecCCCCcccccccccc-chhhhcC--CCCC
Q 045186           80 LDGTSITE-VPSS--IELLHGLELLNLNNCKN--LWT-TIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGL--LNLK  150 (411)
Q Consensus        80 L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~--~~~-~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l--~~L~  150 (411)
                      +++|.++. +|..  ++.+++|+.|++++|..  ..+ ..+..+++|++|++++|.+.+      + |..+..+  .+|+
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~~~L~  183 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS------ICEEDLLNFQGKHFT  183 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC------CCTTTSGGGTTCEEE
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc------cChhhhhcccccccc
Confidence            99999884 4544  88899999999999873  223 337889999999999998877      4 3444443  4555


Q ss_pred             EecccCcc
Q 045186          151 ELELEDCK  158 (411)
Q Consensus       151 ~L~L~~c~  158 (411)
                      .|++++|.
T Consensus       184 ~L~l~~n~  191 (455)
T 3v47_A          184 LLRLSSIT  191 (455)
T ss_dssp             EEECTTCB
T ss_pred             ccccccCc
Confidence            55555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=4e-16  Score=162.89  Aligned_cols=177  Identities=14%  Similarity=0.162  Sum_probs=143.2

Q ss_pred             CCceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEE
Q 045186            1 MECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L   78 (411)
                      +++|++|+|++|.|+.+++ .|+++++|++|+|++|......|..++.+++|++|+|++| .+..+|.. ++++++|++|
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEE
Confidence            5789999999999998765 7999999999999997544444455789999999999996 56677765 5899999999


Q ss_pred             EccCCCCCccCh-hhhccCCCCEEecCCCCCCh-----------------------------------------------
Q 045186           79 YLDGTSITEVPS-SIELLHGLELLNLNNCKNLW-----------------------------------------------  110 (411)
Q Consensus        79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~-----------------------------------------------  110 (411)
                      +|++|.++.++. .++.+++|+.|++++|....                                               
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~  232 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV  232 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence            999999996654 68999999999999886211                                               


Q ss_pred             --------------hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCC---CCCCceE
Q 045186          111 --------------TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI---PPNLWLV  173 (411)
Q Consensus       111 --------------~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L  173 (411)
                                    ...++.+++|+.|+|++|.+.+     ..|..+..+++|+.|+|++|. +..+|..   .++|+.|
T Consensus       233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L  306 (597)
T 3oja_B          233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-----IMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVL  306 (597)
T ss_dssp             CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-----EESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEE
T ss_pred             CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC-----CCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEE
Confidence                          1236678899999999999988     236789999999999999975 5666653   3789999


Q ss_pred             EecCCCCCCccc
Q 045186          174 RANGCSSLVTLS  185 (411)
Q Consensus       174 ~~~~c~~L~~l~  185 (411)
                      ++++|. +..++
T Consensus       307 ~Ls~N~-l~~i~  317 (597)
T 3oja_B          307 DLSHNH-LLHVE  317 (597)
T ss_dssp             ECCSSC-CCCCG
T ss_pred             ECCCCC-CCccC
Confidence            999874 44454

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=7.9e-17  Score=174.31  Aligned_cols=171  Identities=13%  Similarity=0.056  Sum_probs=144.3

Q ss_pred             CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCc--ccccccCCCC-------CccEEEeeCCCCCcccch--h
Q 045186            1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLL--SLPIAISSLK-------CLRNLKLSGCSKLKKFPQ--I   68 (411)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~--~lp~~i~~l~-------~L~~L~Ls~c~~l~~lp~--~   68 (411)
                      |++|++|+|++|.+. .+|..++++++|+.|+|++|..+.  .+|..++.++       +|+.|+|++|. +..+|.  .
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~  568 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS  568 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh
Confidence            578999999999866 889999999999999999986354  5887666555       99999999965 559998  8


Q ss_pred             ccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccc-cceeecCCCCccccccccccchhhhcC
Q 045186           69 VASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAF-ARSFQFDGKEFISCSFDVVFSVSISGL  146 (411)
Q Consensus        69 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~-L~~L~Ls~n~~~~~~~~~~lp~~l~~l  146 (411)
                      ++++++|+.|+|++|.++.+| .++.+++|+.|+|++|... .+..+..+++ |+.|+|++|.+..      +|..+..+
T Consensus       569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~------lp~~~~~~  641 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY------IPNIFNAK  641 (876)
T ss_dssp             HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS------CCSCCCTT
T ss_pred             hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc------Cchhhhcc
Confidence            999999999999999999999 8999999999999999833 3344888888 9999999999998      99877766


Q ss_pred             CC--CCEecccCcccccccCCCC--------CCCceEEecCCC
Q 045186          147 LN--LKELELEDCKRLQSLPQIP--------PNLWLVRANGCS  179 (411)
Q Consensus       147 ~~--L~~L~L~~c~~l~~lp~l~--------~~L~~L~~~~c~  179 (411)
                      +.  |+.|+|++|.....+|.++        ++|+.|++++|.
T Consensus       642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~  684 (876)
T 4ecn_A          642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE  684 (876)
T ss_dssp             CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred             ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence            54  9999999988766666554        378888887763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.66  E-value=4.8e-16  Score=162.01  Aligned_cols=171  Identities=18%  Similarity=0.168  Sum_probs=122.2

Q ss_pred             ceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            3 CLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      +|++|++++|.+..++.. ++++++|++|++++| .+..+|..+..+++|++|++++|......|..++.+++|+.|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            577888888888877654 778888888888885 566788778888888888888865444446677778888888888


Q ss_pred             CCCCC-ccChh-hhccCCCCEEecCCCCCCh----hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186           82 GTSIT-EVPSS-IELLHGLELLNLNNCKNLW----TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE  155 (411)
Q Consensus        82 ~~~i~-~lp~~-i~~l~~L~~L~L~~~~~~~----~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~  155 (411)
                      +|.+. .+|.. ++.+++|+.|++++|....    +..+..+++|+.|++++|.+.+     ..|..+..+++|+.|+++
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-----LKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-----ECTTTTTTCTTCSEEECT
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-----CCHHHhcCCccCCeEECC
Confidence            88776 56554 7778888888888877332    3347777888888888887776     124567777888888888


Q ss_pred             CcccccccCC----CCCCCceEEecCCC
Q 045186          156 DCKRLQSLPQ----IPPNLWLVRANGCS  179 (411)
Q Consensus       156 ~c~~l~~lp~----l~~~L~~L~~~~c~  179 (411)
                      +|......|.    -.++|+.|++++|.
T Consensus       409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             TCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred             CCcCCCcccchhhhCcccCCEEECCCCc
Confidence            7764433332    12567777777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=4.8e-16  Score=145.67  Aligned_cols=161  Identities=17%  Similarity=0.187  Sum_probs=110.1

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      ++..++++++.++.++ .+..+++|+.|++++| .+..+| .+..+++|++|+|++| .+..+|. ++.+++|+.|++++
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence            3445566677777766 4677777888888775 566666 4667777888888774 4566665 77777888888888


Q ss_pred             CCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS  162 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~  162 (411)
                      |.++.+|....  ++|+.|++++|.......+..+++|+.|++++|.+++      ++ .+..+++|+.|++++|. +..
T Consensus        95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~------~~-~l~~l~~L~~L~L~~N~-i~~  164 (263)
T 1xeu_A           95 NRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS------IV-MLGFLSKLEVLDLHGNE-ITN  164 (263)
T ss_dssp             SCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB------CG-GGGGCTTCCEEECTTSC-CCB
T ss_pred             CccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC------Ch-HHccCCCCCEEECCCCc-Ccc
Confidence            87777765333  7788888887774433457777788888888887777      66 57777788888887764 444


Q ss_pred             cCCCC--CCCceEEecCC
Q 045186          163 LPQIP--PNLWLVRANGC  178 (411)
Q Consensus       163 lp~l~--~~L~~L~~~~c  178 (411)
                      ++.+.  ++|+.|+++++
T Consensus       165 ~~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          165 TGGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CTTSTTCCCCCEEEEEEE
T ss_pred             hHHhccCCCCCEEeCCCC
Confidence            43322  45666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.65  E-value=8.5e-16  Score=154.42  Aligned_cols=107  Identities=17%  Similarity=0.086  Sum_probs=79.6

Q ss_pred             CCCcEEEccCCCCC-ccChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCC
Q 045186           73 EDLLELYLDGTSIT-EVPSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLN  148 (411)
Q Consensus        73 ~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~  148 (411)
                      ++|+.|++++|.++ ..|..++.+++|+.|++++|..  ..+..+..+++|+.|+|++|.+.+      + |..+..+++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~  348 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS------IDSRMFENLDK  348 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE------ECGGGGTTCTT
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC------cChhHhcCccc
Confidence            46777777777777 4566788899999999999873  234458888999999999998887      6 567788999


Q ss_pred             CCEecccCcccccccCCC---CCCCceEEecCCCCCCcccC
Q 045186          149 LKELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       149 L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~  186 (411)
                      |+.|+|++|......|..   .++|++|+++++ .++.++.
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  388 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD  388 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH
Confidence            999999988643333432   278888998876 3555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=2.2e-15  Score=163.41  Aligned_cols=152  Identities=21%  Similarity=0.218  Sum_probs=122.0

Q ss_pred             CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      ++|++|+|++|.|+.+ |.+++++++|++|+|++|..+..+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            6799999999999976 567999999999999998777777 67789999999999999766566688899999999999


Q ss_pred             ccCCCCCc-cChh--hhccCCCCEEecCCCCCC--h-hHHHhhccccceeecCCCCccccccccccchhhhcC--CCCCE
Q 045186           80 LDGTSITE-VPSS--IELLHGLELLNLNNCKNL--W-TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGL--LNLKE  151 (411)
Q Consensus        80 L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~~--~-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l--~~L~~  151 (411)
                      |++|.++. +|..  ++.+++|+.|++++|...  . ...++.+++|++|+|++|.+..     ..|..+..+  ++|+.
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-----~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-----VCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-----CCSGGGHHHHHCSSCC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-----eCHHHcccccCCccce
Confidence            99999984 6655  889999999999999732  2 2458899999999999998876     123444444  55555


Q ss_pred             ecccCcc
Q 045186          152 LELEDCK  158 (411)
Q Consensus       152 L~L~~c~  158 (411)
                      |++++|.
T Consensus       179 L~L~~n~  185 (844)
T 3j0a_A          179 FSLAANS  185 (844)
T ss_dssp             CEECCSB
T ss_pred             EECCCCc
Confidence            5555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=9.2e-16  Score=145.84  Aligned_cols=145  Identities=21%  Similarity=0.294  Sum_probs=128.1

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|+|++|.++.++. +.++++|++|+|++| .+..+|. +..+++|++|++++| .+..++ .++.+++|+.|++
T Consensus        67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l  141 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYL  141 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEEC
T ss_pred             CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEc
Confidence            5789999999999999888 999999999999996 5777765 889999999999996 566664 5788999999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      ++|.++.+ ..++.+++|+.|++++|.......+..+++|+.|++++|.++.      +|. +..+++|+.|++++|+
T Consensus       142 ~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~------l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          142 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD------LRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB------CGG-GTTCTTCSEEEEEEEE
T ss_pred             cCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC------Chh-hccCCCCCEEECcCCc
Confidence            99999988 5789999999999999984333338999999999999999999      874 8999999999999976

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.65  E-value=2e-16  Score=164.88  Aligned_cols=172  Identities=19%  Similarity=0.176  Sum_probs=138.7

Q ss_pred             CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCccc---ccccCCCCCccEEEeeCCCCCcccchhccCCCCCc
Q 045186            1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSL---PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLL   76 (411)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~l---p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~   76 (411)
                      +++|++|++++|... .+  .++.+++|++|++++|. +..+   |..+..+++|++|++++|. +..+|..++.+++|+
T Consensus       327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~  402 (606)
T 3vq2_A          327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQ  402 (606)
T ss_dssp             CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCC
T ss_pred             CCccceeeccCCcCccch--hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCC
Confidence            578999999999544 33  47889999999999964 4443   6778899999999999964 777888899999999


Q ss_pred             EEEccCCCCCccC--hhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEe
Q 045186           77 ELYLDGTSITEVP--SSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKEL  152 (411)
Q Consensus        77 ~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L  152 (411)
                      .|++++|.+..++  ..+..+++|+.|++++|..  ..+..++.+++|+.|++++|.+.+    ..+|..+..+++|+.|
T Consensus       403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD----NTLSNVFANTTNLTFL  478 (606)
T ss_dssp             EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----GEECSCCTTCTTCCEE
T ss_pred             eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC----cchHHhhccCCCCCEE
Confidence            9999999998654  4788999999999999983  344568899999999999998875    1157788999999999


Q ss_pred             cccCcccccccCCC---CCCCceEEecCCCC
Q 045186          153 ELEDCKRLQSLPQI---PPNLWLVRANGCSS  180 (411)
Q Consensus       153 ~L~~c~~l~~lp~l---~~~L~~L~~~~c~~  180 (411)
                      ++++|......|..   .++|+.|++++|.-
T Consensus       479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            99998654444432   37889999988843

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.64  E-value=1.1e-15  Score=139.43  Aligned_cols=145  Identities=23%  Similarity=0.311  Sum_probs=121.9

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT   83 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (411)
                      +.+++++++++.+|..+.  ++|+.|+|++| .+..+|. .+..+++|+.|+|++|......|..+.++++|+.|+|++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            467888899999998664  78999999995 5666654 6888999999999996554445788999999999999999


Q ss_pred             CCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecccCcc
Q 045186           84 SITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELEDCK  158 (411)
Q Consensus        84 ~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~~c~  158 (411)
                      .|+.+|.. +..+++|+.|+|++|.  ...+..+..+++|+.|+|++|.+++      ++. .+..+++|+.|+|++|+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT------IAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE------ECHHHHhCCCCCCEEEeCCCC
Confidence            99988876 5789999999999998  3445568899999999999999998      774 57888999999999876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=3.2e-16  Score=150.10  Aligned_cols=169  Identities=16%  Similarity=0.088  Sum_probs=131.3

Q ss_pred             CCceeEEEEeCCCCCcc-c----ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcc--cc--hhccC
Q 045186            1 MECLRELLLDGTDIKEL-P----VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKK--FP--QIVAS   71 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p----~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--lp--~~l~~   71 (411)
                      +++|++|+|++|.+... +    ..+..+++|++|+|++|......|..+..+++|++|+|++|...+.  ++  ..++.
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  195 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK  195 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence            46899999999999842 2    2356799999999999765455557788999999999999765542  33  23468


Q ss_pred             CCCCcEEEccCCCCCccChh----hhccCCCCEEecCCCCCCh--hHHHhhc---cccceeecCCCCccccccccccchh
Q 045186           72 MEDLLELYLDGTSITEVPSS----IELLHGLELLNLNNCKNLW--TTIIYIM---AFARSFQFDGKEFISCSFDVVFSVS  142 (411)
Q Consensus        72 l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~~~~~~--~~~l~~l---~~L~~L~Ls~n~~~~~~~~~~lp~~  142 (411)
                      +++|++|+|++|.++.++..    ++.+++|+.|+|++|....  +..+..+   ++|++|+|++|.++.      +|..
T Consensus       196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~------lp~~  269 (310)
T 4glp_A          196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ------VPKG  269 (310)
T ss_dssp             SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS------CCSC
T ss_pred             CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc------hhhh
Confidence            99999999999999877653    5788999999999998322  3334444   799999999999999      9987


Q ss_pred             hhcCCCCCEecccCcccccccCC--CCCCCceEEecCC
Q 045186          143 ISGLLNLKELELEDCKRLQSLPQ--IPPNLWLVRANGC  178 (411)
Q Consensus       143 l~~l~~L~~L~L~~c~~l~~lp~--l~~~L~~L~~~~c  178 (411)
                      +.  ++|+.|+|++|+ ++.+|.  ..++|+.|+++++
T Consensus       270 ~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          270 LP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             CC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSST
T ss_pred             hc--CCCCEEECCCCc-CCCCchhhhCCCccEEECcCC
Confidence            74  899999999975 555543  2366777777664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=1.6e-16  Score=148.85  Aligned_cols=144  Identities=20%  Similarity=0.326  Sum_probs=126.5

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|++++|.|+.+| .++.+++|+.|+|++| .+..+|. +..+++|++|+|++| .++.+|....  ++|+.|++
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L  113 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFL  113 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEEC
T ss_pred             cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEc
Confidence            468999999999999998 5999999999999995 6777877 889999999999995 5777776444  89999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      ++|.++.++ .+..+++|+.|++++|.......+..+++|+.|++++|.+..      + ..+..+++|+.|++++|+
T Consensus       114 ~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~------~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          114 DNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN------T-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB------C-TTSTTCCCCCEEEEEEEE
T ss_pred             cCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc------h-HHhccCCCCCEEeCCCCc
Confidence            999999886 589999999999999984444568899999999999999998      7 578899999999999976

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.64  E-value=2.3e-15  Score=153.98  Aligned_cols=168  Identities=16%  Similarity=0.162  Sum_probs=117.0

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCc--ccchhccCCCCCcEEEc
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK--KFPQIVASMEDLLELYL   80 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L   80 (411)
                      +|+.|++++|.+..++. ...+++|++|++++|.....+|..+..+++|++|++++|...+  .+|..++.+++|+.|++
T Consensus       303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            35556666655544331 2577888888888876555577778888888888888865443  55667788888888888


Q ss_pred             cCCCCCc-cChh-hhccCCCCEEecCCCCCChhHHHhhc-cccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186           81 DGTSITE-VPSS-IELLHGLELLNLNNCKNLWTTIIYIM-AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC  157 (411)
Q Consensus        81 ~~~~i~~-lp~~-i~~l~~L~~L~L~~~~~~~~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c  157 (411)
                      ++|.++. +|.. +..+++|+.|++++|.... .....+ ++|+.|++++|.++.      +|..+..+++|+.|++++|
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~L~~L~Ls~N~l~~------ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-TIFRCLPPRIKVLDLHSNKIKS------IPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-GGGGSCCTTCCEEECCSSCCCC------CCGGGGGCTTCCEEECCSS
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCc-chhhhhcccCCEEECCCCcccc------cchhhhcCCCCCEEECCCC
Confidence            8888885 7765 6677888888888886322 112222 688888888888887      8887778888888888886


Q ss_pred             ccccccCCC----CCCCceEEecCCC
Q 045186          158 KRLQSLPQI----PPNLWLVRANGCS  179 (411)
Q Consensus       158 ~~l~~lp~l----~~~L~~L~~~~c~  179 (411)
                      + ++.+|..    .++|+.|++++++
T Consensus       455 ~-l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          455 Q-LKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             c-CCccCHHHhccCCcccEEECcCCC
Confidence            4 5566652    2456666666553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.64  E-value=2.8e-16  Score=151.55  Aligned_cols=173  Identities=22%  Similarity=0.235  Sum_probs=134.5

Q ss_pred             CCceeEEEEeCCCCCc--ccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCc--ccchhccCCCCCc
Q 045186            1 MECLRELLLDGTDIKE--LPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK--KFPQIVASMEDLL   76 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~--lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~   76 (411)
                      +++|++|+|++|.+..  +|..+..+++|++|+|++|......|..+..+++|++|+|++|..++  .++..++.+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            4688999999988873  77778889999999999876544677778889999999999986666  4777788889999


Q ss_pred             EEEccCC-CCCc--cChhhhccC-CCCEEecCCCC-CCh----hHHHhhccccceeecCCCC-ccccccccccchhhhcC
Q 045186           77 ELYLDGT-SITE--VPSSIELLH-GLELLNLNNCK-NLW----TTIIYIMAFARSFQFDGKE-FISCSFDVVFSVSISGL  146 (411)
Q Consensus        77 ~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~~~~-~~~----~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~lp~~l~~l  146 (411)
                      +|++++| .++.  ++..+..++ +|+.|++++|. ...    +..+..+++|+.|++++|. ++.     ..+..+..+
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~l~~l  246 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-----DCFQEFFQL  246 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-----GGGGGGGGC
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-----HHHHHHhCC
Confidence            9999999 8883  677788888 99999999985 222    3347788999999999998 443     256678888


Q ss_pred             CCCCEecccCccccccc--CCC--CCCCceEEecCC
Q 045186          147 LNLKELELEDCKRLQSL--PQI--PPNLWLVRANGC  178 (411)
Q Consensus       147 ~~L~~L~L~~c~~l~~l--p~l--~~~L~~L~~~~c  178 (411)
                      ++|+.|++++|..+...  ..+  .++|+.|++.+|
T Consensus       247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            99999999998644321  111  367888888888

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.64  E-value=3.7e-15  Score=143.93  Aligned_cols=164  Identities=20%  Similarity=0.214  Sum_probs=132.9

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      ++|++|+|++|.|+.+++ .++++++|++|+|++|......|..+..+++|++|++++| .+..+|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence            579999999999998854 6999999999999997544444788999999999999995 5778887765  89999999


Q ss_pred             cCCCCCccChh-hhccCCCCEEecCCCCCC----hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186           81 DGTSITEVPSS-IELLHGLELLNLNNCKNL----WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE  155 (411)
Q Consensus        81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~  155 (411)
                      ++|.++.+|.. +..+++|+.|++++|...    .+..+..+ +|+.|++++|.+..      +|..+.  ++|+.|+++
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~------l~~~~~--~~L~~L~l~  201 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG------IPKDLP--ETLNELHLD  201 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS------CCSSSC--SSCSCCBCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc------cCcccc--CCCCEEECC
Confidence            99999988764 889999999999999842    33446666 99999999999999      987654  799999999


Q ss_pred             CcccccccC-C-C--CCCCceEEecCC
Q 045186          156 DCKRLQSLP-Q-I--PPNLWLVRANGC  178 (411)
Q Consensus       156 ~c~~l~~lp-~-l--~~~L~~L~~~~c  178 (411)
                      +|. +..++ . +  .++|+.|+++++
T Consensus       202 ~n~-i~~~~~~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          202 HNK-IQAIELEDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             SSC-CCCCCTTSSTTCTTCSCCBCCSS
T ss_pred             CCc-CCccCHHHhcCCCCCCEEECCCC
Confidence            975 44443 2 1  256777777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=5.7e-16  Score=157.92  Aligned_cols=173  Identities=16%  Similarity=0.134  Sum_probs=131.2

Q ss_pred             CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh------------
Q 045186            2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI------------   68 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~------------   68 (411)
                      ++|++|+|++|.|..++ ..++.+++|++|+|++|. +..+++ +..+++|++|+|++|. +..+|..            
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcCCc
Confidence            48999999999999775 579999999999999964 554444 8888888888888853 3333311            


Q ss_pred             -----ccCCCCCcEEEccCCCCCcc-ChhhhccCCCCEEecCCCCCC--hhHHH-hhccccceeecCCCCcccccccccc
Q 045186           69 -----VASMEDLLELYLDGTSITEV-PSSIELLHGLELLNLNNCKNL--WTTII-YIMAFARSFQFDGKEFISCSFDVVF  139 (411)
Q Consensus        69 -----l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~--~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~l  139 (411)
                           ...+++|+.|+|++|.++.+ |..++.+++|+.|+|++|...  .+..+ ..+++|+.|+|++|.+++      +
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~------~  184 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD------V  184 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE------E
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc------c
Confidence                 12467899999999999965 557889999999999999832  33344 478999999999999998      7


Q ss_pred             chhhhcCCCCCEecccCcccccccCC-C--CCCCceEEecCCCCCCcccC
Q 045186          140 SVSISGLLNLKELELEDCKRLQSLPQ-I--PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       140 p~~l~~l~~L~~L~L~~c~~l~~lp~-l--~~~L~~L~~~~c~~L~~l~~  186 (411)
                      |. ...+++|+.|+|++|. +..+|. +  .++|+.|+++++. +..+|.
T Consensus       185 ~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~  231 (487)
T 3oja_A          185 KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEK  231 (487)
T ss_dssp             EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECT
T ss_pred             cc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccch
Confidence            64 4468999999999975 555543 2  2678999998863 455543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.63  E-value=1.1e-15  Score=146.92  Aligned_cols=172  Identities=16%  Similarity=0.132  Sum_probs=126.7

Q ss_pred             CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-------------
Q 045186            2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-------------   67 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-------------   67 (411)
                      ++|++|+|++|.|+.++ ..++++++|++|+|++| .+..++. +..+++|++|++++|. +..+|.             
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n~  110 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNN  110 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCc-cccccCCCCcCEEECCCCc
Confidence            57899999999988775 46888999999999986 4554544 7788888888888753 332221             


Q ss_pred             ----hccCCCCCcEEEccCCCCCccCh-hhhccCCCCEEecCCCCCCh--hHH-HhhccccceeecCCCCcccccccccc
Q 045186           68 ----IVASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNCKNLW--TTI-IYIMAFARSFQFDGKEFISCSFDVVF  139 (411)
Q Consensus        68 ----~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~-l~~l~~L~~L~Ls~n~~~~~~~~~~l  139 (411)
                          ....+++|+.|++++|.++.++. .++.+++|+.|++++|....  ... ...+++|++|+|++|.++.      +
T Consensus       111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~------~  184 (317)
T 3o53_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD------V  184 (317)
T ss_dssp             CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE------E
T ss_pred             cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc------c
Confidence                01246789999999999997654 68889999999999987332  233 4578999999999999888      7


Q ss_pred             chhhhcCCCCCEecccCcccccccCCC---CCCCceEEecCCCCCCccc
Q 045186          140 SVSISGLLNLKELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       140 p~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~  185 (411)
                      |. ...+++|+.|+|++|. ++.+|..   .++|+.|+++++ .++.++
T Consensus       185 ~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~  230 (317)
T 3o53_A          185 KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIE  230 (317)
T ss_dssp             EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEEC
T ss_pred             cc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchh
Confidence            64 3458899999999875 5555432   367888888887 455555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=1e-15  Score=155.97  Aligned_cols=151  Identities=17%  Similarity=0.099  Sum_probs=91.5

Q ss_pred             cccccccCCC----CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChh
Q 045186           16 ELPVSIELLS----GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSS   91 (411)
Q Consensus        16 ~lp~si~~l~----~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~   91 (411)
                      .+|..+..+.    +|+.|+|++|......|..+..+++|++|+|++|. +...++ ++.+++|+.|+|++|.++.+|..
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~   98 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLVG   98 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEEEEEEEC
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcCCCCCCC
Confidence            5666655554    89999999975444446789999999999999965 444444 88899999999999988766532


Q ss_pred             hhccCCCCEEecCCCCC-----------------------ChhHHHhhccccceeecCCCCccccccccccchhhh-cCC
Q 045186           92 IELLHGLELLNLNNCKN-----------------------LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSIS-GLL  147 (411)
Q Consensus        92 i~~l~~L~~L~L~~~~~-----------------------~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~-~l~  147 (411)
                          ++|+.|++++|..                       ..+..++.+++|+.|+|++|.+++     ..|..+. .++
T Consensus        99 ----~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~~l~  169 (487)
T 3oja_A           99 ----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSD  169 (487)
T ss_dssp             ----TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-----EEGGGGGGGTT
T ss_pred             ----CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-----cChHHHhhhCC
Confidence                4555555555541                       112234445555555555555544     1223332 455


Q ss_pred             CCCEecccCcccccccCCC--CCCCceEEecCC
Q 045186          148 NLKELELEDCKRLQSLPQI--PPNLWLVRANGC  178 (411)
Q Consensus       148 ~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c  178 (411)
                      +|+.|+|++|. ++.+|..  .++|+.|+++++
T Consensus       170 ~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          170 TLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN  201 (487)
T ss_dssp             TCCEEECTTSC-CCEEECCCCCTTCCEEECCSS
T ss_pred             cccEEecCCCc-cccccccccCCCCCEEECCCC
Confidence            55555555543 3333322  244555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=2e-15  Score=137.57  Aligned_cols=144  Identities=15%  Similarity=0.183  Sum_probs=118.0

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc-c-cccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEcc
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-P-IAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLD   81 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l-p-~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~   81 (411)
                      +.++++++.++.+|..+.  ..+++|+|++| .+..+ | ..+..+++|++|+|++|. +..++ ..++.+++|++|+|+
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECC
Confidence            478899999999998664  45789999995 56665 3 336789999999999954 55555 478899999999999


Q ss_pred             CCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEecccCc
Q 045186           82 GTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELELEDC  157 (411)
Q Consensus        82 ~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L~~c  157 (411)
                      +|.++.++.. +..+++|+.|+|++|.  ...+..+..+++|+.|+|++|.+++      + |..+..+++|+.|+|++|
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT------VAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC------BCTTTTTTCTTCCEEECCSC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE------ECHHHhcCCCCCCEEEecCc
Confidence            9999977764 8889999999999998  3345568889999999999999988      6 677888999999999987


Q ss_pred             c
Q 045186          158 K  158 (411)
Q Consensus       158 ~  158 (411)
                      +
T Consensus       164 ~  164 (220)
T 2v70_A          164 P  164 (220)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=1.8e-15  Score=136.18  Aligned_cols=160  Identities=20%  Similarity=0.247  Sum_probs=120.8

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccC
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDG   82 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~   82 (411)
                      +.++.+++.++.+|..+  .++|++|+|++| .+..+|. .+..+++|++|++++| .++.+|. .+..+++|++|+|++
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence            45677788888888654  468999999986 4555554 4678899999999985 4556654 467889999999999


Q ss_pred             CCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCcc
Q 045186           83 TSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCK  158 (411)
Q Consensus        83 ~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c~  158 (411)
                      |.++.+|.. +..+++|+.|++++|.  ......+..+++|+.|+|++|.+++      +|.. +..+++|+.|++++|+
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS------VPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSCC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce------eCHHHhccCCCccEEEecCCC
Confidence            999877765 6788999999999887  3334447888999999999999888      7754 6888999999999986


Q ss_pred             cccccCCCCCCCceEEecCC
Q 045186          159 RLQSLPQIPPNLWLVRANGC  178 (411)
Q Consensus       159 ~l~~lp~l~~~L~~L~~~~c  178 (411)
                      .....    +.|++|++..+
T Consensus       160 ~~~~~----~~l~~L~~~~n  175 (208)
T 2o6s_A          160 WDCTC----PGIRYLSEWIN  175 (208)
T ss_dssp             BCCCT----TTTHHHHHHHH
T ss_pred             eecCC----CCHHHHHHHHH
Confidence            54433    34555554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.62  E-value=5.9e-15  Score=149.30  Aligned_cols=170  Identities=19%  Similarity=0.244  Sum_probs=131.4

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|++++|. +..++ .+..+++|+.|++
T Consensus       176 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l  250 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDL  250 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEEC
T ss_pred             CCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCc-cccccc-ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEEC
Confidence            4689999999999888765 8889999999999864 454544 6778899999999864 55554 4677889999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL  160 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l  160 (411)
                      ++|.++.++. +..+++|+.|++++|.......+..+++|+.|++++|.+.+      ++. +..+++|+.|++++|. +
T Consensus       251 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~------~~~-~~~l~~L~~L~L~~n~-l  321 (466)
T 1o6v_A          251 ANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED------ISP-ISNLKNLTYLTLYFNN-I  321 (466)
T ss_dssp             CSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC------CGG-GGGCTTCSEEECCSSC-C
T ss_pred             CCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccC------chh-hcCCCCCCEEECcCCc-C
Confidence            9999887765 88889999999998874333337888899999999998888      764 7888999999999875 4


Q ss_pred             cccCCC--CCCCceEEecCCCCCCccc
Q 045186          161 QSLPQI--PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       161 ~~lp~l--~~~L~~L~~~~c~~L~~l~  185 (411)
                      ..++.+  .++|+.|++.+| .+..++
T Consensus       322 ~~~~~~~~l~~L~~L~l~~n-~l~~~~  347 (466)
T 1o6v_A          322 SDISPVSSLTKLQRLFFYNN-KVSDVS  347 (466)
T ss_dssp             SCCGGGGGCTTCCEEECCSS-CCCCCG
T ss_pred             CCchhhccCccCCEeECCCC-ccCCch
Confidence            443332  377888888877 344443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.6e-15  Score=131.79  Aligned_cols=132  Identities=20%  Similarity=0.144  Sum_probs=89.9

Q ss_pred             CCCCccEEEEecCCCCc--ccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCc-cChhhhccCCCC
Q 045186           23 LLSGLVQLSLKGCKNLL--SLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITE-VPSSIELLHGLE   99 (411)
Q Consensus        23 ~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~   99 (411)
                      ..++|+.|+|++|. +.  .+|..+..+++|++|++++|. +..+ ..++.+++|+.|++++|.++. +|..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            34667777777754 43  666666667777777777754 4444 556667777777777777775 666666677777


Q ss_pred             EEecCCCCCCh-h--HHHhhccccceeecCCCCccccccccccch----hhhcCCCCCEecccCcccccccC
Q 045186          100 LLNLNNCKNLW-T--TIIYIMAFARSFQFDGKEFISCSFDVVFSV----SISGLLNLKELELEDCKRLQSLP  164 (411)
Q Consensus       100 ~L~L~~~~~~~-~--~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~----~l~~l~~L~~L~L~~c~~l~~lp  164 (411)
                      .|++++|.... +  ..+..+++|+.|++++|.++.      +|.    .+..+++|+.|++++|. +..+|
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~------~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~  163 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN------LNDYRESVFKLLPQLTYLDGYDRE-DQEAP  163 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT------STTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc------hHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence            77777776222 1  446777788888888888887      775    67888888888888875 34443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.62  E-value=3.8e-15  Score=150.60  Aligned_cols=97  Identities=24%  Similarity=0.277  Sum_probs=61.1

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++|++|++++|.++.+| .++.+++|++|+|++| .+..+|  ++.+++|++|++++|. +..+|  ++++++|++|+++
T Consensus        42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECC
T ss_pred             CCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECC
Confidence            56777777777777665 4777777777777774 455554  5666667777776643 44443  5566666666666


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCC
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCK  107 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~  107 (411)
                      +|.++.+|  ++.+++|+.|++++|.
T Consensus       115 ~N~l~~l~--~~~l~~L~~L~l~~N~  138 (457)
T 3bz5_A          115 TNKLTKLD--VSQNPLLTYLNCARNT  138 (457)
T ss_dssp             SSCCSCCC--CTTCTTCCEEECTTSC
T ss_pred             CCcCCeec--CCCCCcCCEEECCCCc
Confidence            66666554  5555566666655554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.62  E-value=4e-15  Score=136.34  Aligned_cols=145  Identities=20%  Similarity=0.160  Sum_probs=102.7

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCC
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGT   83 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~   83 (411)
                      +.++.+++.+..+|..+.  ++|++|+|++|......|..+..+++|++|+|++|. ++.+|. .++.+++|+.|+|++|
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC
Confidence            456777777888877553  778888888864444446667778888888888854 566664 4577888888888888


Q ss_pred             CCCccChh-hhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccCcc
Q 045186           84 SITEVPSS-IELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCK  158 (411)
Q Consensus        84 ~i~~lp~~-i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~  158 (411)
                      .|+.+|.. +..+++|+.|+|++|.. ..+..+..+++|+.|+|++|.+..      +| ..+..+++|+.|+|++|+
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS------IPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECTTSC
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc------cCHHHHhCCCCCCEEEeeCCC
Confidence            88877654 56778888888887762 223446777777777777777777      66 346677777777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=6.3e-15  Score=132.60  Aligned_cols=149  Identities=22%  Similarity=0.268  Sum_probs=83.0

Q ss_pred             ceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186            3 CLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY   79 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~   79 (411)
                      +|++|+|++|.++.++.. ++.+++|++|+|++| .+..+|.. +..+++|++|+|++|. +..+|. .++.+++|+.|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence            466666666666655543 456666666666664 34444432 3556666666666643 334433 345666666666


Q ss_pred             ccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186           80 LDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED  156 (411)
Q Consensus        80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~  156 (411)
                      +++|.++.+|.. +..+++|+.|++++|.  ......+..+++|+.|++++|.+..            .+++|+.|+++.
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------------~~~~l~~L~~~~  174 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------------TCPGIRYLSEWI  174 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------------CTTTTHHHHHHH
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------------CCCCHHHHHHHH
Confidence            666666655543 4556666666666665  2222335556666666666665443            234555666666


Q ss_pred             cccccccCC
Q 045186          157 CKRLQSLPQ  165 (411)
Q Consensus       157 c~~l~~lp~  165 (411)
                      |...+.+|.
T Consensus       175 n~~~g~ip~  183 (208)
T 2o6s_A          175 NKHSGVVRN  183 (208)
T ss_dssp             HHCTTTBBC
T ss_pred             HhCCceeec
Confidence            555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.61  E-value=7e-16  Score=158.79  Aligned_cols=171  Identities=18%  Similarity=0.127  Sum_probs=131.8

Q ss_pred             CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      ++|++|+|++|.++.+ |..++++++|++|+|++|......|..+..+++|++|+|++|...+..|..++++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            4799999999999977 456999999999999997544444577899999999999997544444455899999999999


Q ss_pred             cCCCCC--ccChhhhccCCCCEEecCCCCC---ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186           81 DGTSIT--EVPSSIELLHGLELLNLNNCKN---LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE  155 (411)
Q Consensus        81 ~~~~i~--~lp~~i~~l~~L~~L~L~~~~~---~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~  155 (411)
                      ++|.++  .+|..++.+++|+.|++++|..   .....+..+++|++|++++|.+.+     .+|..+..+++|+.|+++
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-----YQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-----ECTTTTTTCSEEEEEEEE
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-----cChhhhhccccCceEecc
Confidence            999998  4567899999999999999862   222458889999999999998877     356677777777777777


Q ss_pred             CcccccccCC----CCCCCceEEecCC
Q 045186          156 DCKRLQSLPQ----IPPNLWLVRANGC  178 (411)
Q Consensus       156 ~c~~l~~lp~----l~~~L~~L~~~~c  178 (411)
                      +|. +..+|.    ..++|++|+++++
T Consensus       181 ~n~-~~~~~~~~~~~l~~L~~L~L~~n  206 (549)
T 2z81_A          181 LSE-SAFLLEIFADILSSVRYLELRDT  206 (549)
T ss_dssp             CSB-STTHHHHHHHSTTTBSEEEEESC
T ss_pred             cCc-ccccchhhHhhcccccEEEccCC
Confidence            654 233332    1356666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.61  E-value=9.7e-15  Score=152.78  Aligned_cols=91  Identities=25%  Similarity=0.418  Sum_probs=41.2

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +|++|+|++|.|+.+|.   .+++|++|+|++| .++.+|.   .+++|++|+|++| .+..+|.   .+++|+.|++++
T Consensus        62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~  130 (622)
T 3g06_A           62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG  130 (622)
T ss_dssp             TCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred             CCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence            34444444444444443   3344555555443 2344443   3444445555442 2333433   234444444444


Q ss_pred             CCCCccChhhhccCCCCEEecCCCC
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCK  107 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~  107 (411)
                      |.++.+|..   +++|+.|++++|.
T Consensus       131 N~l~~lp~~---l~~L~~L~Ls~N~  152 (622)
T 3g06_A          131 NQLTSLPVL---PPGLQELSVSDNQ  152 (622)
T ss_dssp             SCCSCCCCC---CTTCCEEECCSSC
T ss_pred             CCCCcCCCC---CCCCCEEECcCCc
Confidence            444444432   2455555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=1.1e-15  Score=157.68  Aligned_cols=177  Identities=18%  Similarity=0.179  Sum_probs=126.6

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc---ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcE
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL---PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLE   77 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l---p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~   77 (411)
                      +++|++|++++|.+..... ...+++|++|++++|. +..+   |..+..+++|++|++++|. +..+|..++.+++|+.
T Consensus       324 l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~  400 (570)
T 2z63_A          324 LKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH  400 (570)
T ss_dssp             CSSCCEEEEESCBSCCBCC-CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred             ccccCEEeCcCCccccccc-cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCE
Confidence            4678888888887764433 2778888888888864 4433   5667788888888888854 5556656788888888


Q ss_pred             EEccCCCCCccC--hhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEec
Q 045186           78 LYLDGTSITEVP--SSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE  153 (411)
Q Consensus        78 L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~  153 (411)
                      |++++|.+...+  ..+..+++|+.|++++|..  ..+..+..+++|+.|++++|.+..    +.+|..+..+++|+.|+
T Consensus       401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----GEECSCCTTCTTCCEEE
T ss_pred             EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc----ccchhhhhcccCCCEEE
Confidence            888888887553  3577888888888888872  234457788888888888888761    12777788888888888


Q ss_pred             ccCcccccccCCC---CCCCceEEecCCCCCCccc
Q 045186          154 LEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       154 L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~  185 (411)
                      +++|......|..   .++|+.|++++| .++.++
T Consensus       477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~  510 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVP  510 (570)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             CCCCccccCChhhhhcccCCCEEeCCCC-cCCCCC
Confidence            8887644333432   267888888876 344443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.61  E-value=1e-14  Score=147.52  Aligned_cols=167  Identities=20%  Similarity=0.277  Sum_probs=140.5

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|++++|.+..+++ ++.+++|+.|++++| .+..++ .+..+++|+.|++++|. +..++. ++.+++|+.|++
T Consensus       198 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l  272 (466)
T 1o6v_A          198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKL  272 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEEC
T ss_pred             CCCCCEEEecCCccccccc-ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEEC
Confidence            5789999999999998776 888999999999996 566665 47789999999999965 555554 888999999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL  160 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l  160 (411)
                      ++|.++.++. +..+++|+.|++++|.......+..+++|+.|++++|.+.+      ++. +..+++|+.|++++|+ +
T Consensus       273 ~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~------~~~-~~~l~~L~~L~l~~n~-l  343 (466)
T 1o6v_A          273 GANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD------ISP-VSSLTKLQRLFFYNNK-V  343 (466)
T ss_dssp             CSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC------CGG-GGGCTTCCEEECCSSC-C
T ss_pred             CCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCC------chh-hccCccCCEeECCCCc-c
Confidence            9999998876 88999999999999984443448899999999999999998      764 7899999999999984 5


Q ss_pred             cccCCCC--CCCceEEecCCCCC
Q 045186          161 QSLPQIP--PNLWLVRANGCSSL  181 (411)
Q Consensus       161 ~~lp~l~--~~L~~L~~~~c~~L  181 (411)
                      ..++.+.  ++|+.|++++|.--
T Consensus       344 ~~~~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          344 SDVSSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCC
T ss_pred             CCchhhccCCCCCEEeCCCCccC
Confidence            6665543  78999999888543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.60  E-value=8.9e-15  Score=147.88  Aligned_cols=141  Identities=18%  Similarity=0.122  Sum_probs=82.0

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-------------------ccCCCCCccEEEeeCCCCC
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-------------------AISSLKCLRNLKLSGCSKL   62 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-------------------~i~~l~~L~~L~Ls~c~~l   62 (411)
                      ++|++|++++|.|+.+|  ++++++|++|++++| .+..+|-                   .+..+++|++|++++|..+
T Consensus        85 ~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A           85 TNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             TTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCC
T ss_pred             CCCCEEECcCCCCceee--cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcc
Confidence            45555666555555543  555555555555553 3333330                   1334444444444444444


Q ss_pred             cccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchh
Q 045186           63 KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS  142 (411)
Q Consensus        63 ~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~  142 (411)
                      +.+  .++.+++|+.|++++|.++.+|  ++.+++|+.|++++|..... .++.+++|+.|++++|.+++      +|  
T Consensus       162 ~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~------ip--  228 (457)
T 3bz5_A          162 TKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTE------ID--  228 (457)
T ss_dssp             CCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC------CC--
T ss_pred             ccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccc------cC--
Confidence            444  2455666677777777776665  66667777777776662221 25666777777777777777      66  


Q ss_pred             hhcCCCCCEecccCcc
Q 045186          143 ISGLLNLKELELEDCK  158 (411)
Q Consensus       143 l~~l~~L~~L~L~~c~  158 (411)
                      +..+++|+.|++++|.
T Consensus       229 ~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          229 VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CTTCTTCSEEECCSSC
T ss_pred             ccccCCCCEEEeeCCc
Confidence            6667777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.60  E-value=6.3e-15  Score=153.85  Aligned_cols=146  Identities=21%  Similarity=0.302  Sum_probs=128.6

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      |++|+.|+|++|.|..+++ +..+++|+.|+|++| .+..+| .+..+++|+.|+|++|. +..++ .+..+++|+.|+|
T Consensus        64 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L  138 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYL  138 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEEC
T ss_pred             CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEEC
Confidence            5799999999999999887 999999999999996 667776 58899999999999964 56665 5888999999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKR  159 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~  159 (411)
                      ++|.++.+ ..+..+++|+.|+|++|.......+..+++|+.|+|++|.+..      +| .+..+++|+.|+|++|+.
T Consensus       139 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~------l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD------LR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB------CG-GGTTCTTCSEEECCSEEE
T ss_pred             CCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC------Ch-HHccCCCCCEEEccCCcC
Confidence            99999988 6799999999999999984333338999999999999999999      86 689999999999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.60  E-value=5.6e-15  Score=156.14  Aligned_cols=150  Identities=19%  Similarity=0.175  Sum_probs=109.9

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~   79 (411)
                      ++|++|+|++|.++.+|. .++++++|++|+|++|......|..+.++++|++|+|++| .+..+|. .++++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence            468888888888887765 4888888888888886544444666777888888888885 4566665 577888888888


Q ss_pred             ccCCCCCccC-hhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hh--hcCCCCCEec
Q 045186           80 LDGTSITEVP-SSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SI--SGLLNLKELE  153 (411)
Q Consensus        80 L~~~~i~~lp-~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l--~~l~~L~~L~  153 (411)
                      +++|.++.+| ..++.+++|++|++++|.  ...+..++.+++|++|++++|.+++      ++. .+  ..+++|+.|+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA------LKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC------BCHHHHGGGTTCEESEEE
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc------cCHHHhhccccccccEEE
Confidence            8888888666 467888888888888886  2333446777888888888887777      543 23  2457788888


Q ss_pred             ccCcc
Q 045186          154 LEDCK  158 (411)
Q Consensus       154 L~~c~  158 (411)
                      +++|.
T Consensus       178 L~~n~  182 (680)
T 1ziw_A          178 LSSNQ  182 (680)
T ss_dssp             CTTCC
T ss_pred             CCCCc
Confidence            87764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=6.1e-15  Score=131.78  Aligned_cols=130  Identities=15%  Similarity=0.093  Sum_probs=111.1

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|++++|.++.++ .+..+++|++|++++|......|..+..+++|++|++++|......|..++.+++|+.|++
T Consensus        65 l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           65 AHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             CTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            578999999999888776 5999999999999997554457788999999999999998766678888999999999999


Q ss_pred             cCCC-CCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccc
Q 045186           81 DGTS-ITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        81 ~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      ++|. ++.+| .+..+++|+.|++++|.......+..+++|+.|++++|++..
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence            9998 88887 799999999999999984443478899999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=3.4e-15  Score=153.62  Aligned_cols=171  Identities=20%  Similarity=0.270  Sum_probs=135.4

Q ss_pred             CceeEEEEeCCCCCcccccc-cCCCCccEEEEecCCCCccccc---ccCCCCCccEEEeeCCCCCcccc---hhccCCCC
Q 045186            2 ECLRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPI---AISSLKCLRNLKLSGCSKLKKFP---QIVASMED   74 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si-~~l~~L~~L~L~~c~~l~~lp~---~i~~l~~L~~L~Ls~c~~l~~lp---~~l~~l~~   74 (411)
                      ++|++|++++|.+..+|..+ +++++|++|+|++|...+.+|.   .+..+++|++|++++| .+..+|   ..++.+++
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCC
Confidence            46899999999999999876 5799999999999866555543   3678999999999996 566555   45888999


Q ss_pred             CcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecc
Q 045186           75 LLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELEL  154 (411)
Q Consensus        75 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L  154 (411)
                      |++|++++|.++.+|..++.+++|+.|++++|...... -...++|+.|+|++|++++      ++   ..+++|+.|+|
T Consensus       389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~Ls~N~l~~------~~---~~l~~L~~L~L  458 (549)
T 2z81_A          389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK-TCIPQTLEVLDVSNNNLDS------FS---LFLPRLQELYI  458 (549)
T ss_dssp             CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCC-TTSCTTCSEEECCSSCCSC------CC---CCCTTCCEEEC
T ss_pred             CCEEECCCCCCccCChhhcccccccEEECCCCCccccc-chhcCCceEEECCCCChhh------hc---ccCChhcEEEC
Confidence            99999999999999999999999999999999832100 1113689999999998888      65   46788999999


Q ss_pred             cCcccccccCCC--CCCCceEEecCCCCCCccc
Q 045186          155 EDCKRLQSLPQI--PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       155 ~~c~~l~~lp~l--~~~L~~L~~~~c~~L~~l~  185 (411)
                      ++| .++.+|..  .++|+.|+++++ .++.++
T Consensus       459 s~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~  489 (549)
T 2z81_A          459 SRN-KLKTLPDASLFPVLLVMKISRN-QLKSVP  489 (549)
T ss_dssp             CSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCC
T ss_pred             CCC-ccCcCCCcccCccCCEEecCCC-ccCCcC
Confidence            987 46677764  478889998886 444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.59  E-value=8.9e-15  Score=151.40  Aligned_cols=128  Identities=19%  Similarity=0.183  Sum_probs=60.3

Q ss_pred             cCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCc---ccchhccCCCCCcEEEccCCCCCc-cChh-hhccC
Q 045186           22 ELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK---KFPQIVASMEDLLELYLDGTSITE-VPSS-IELLH   96 (411)
Q Consensus        22 ~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~---~lp~~l~~l~~L~~L~L~~~~i~~-lp~~-i~~l~   96 (411)
                      +.+++|++|++++|.....+|..+..+++|++|++++|. +.   .+|..++++++|+.|++++|.++. +|.. +..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            344455555555543333344445555555555555532 22   222334455555555555555553 4432 44445


Q ss_pred             CCCEEecCCCCCChhHHHhhc-cccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186           97 GLELLNLNNCKNLWTTIIYIM-AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC  157 (411)
Q Consensus        97 ~L~~L~L~~~~~~~~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c  157 (411)
                      +|+.|++++|... ......+ ++|+.|+|++|.++.      +|..+..+++|+.|+|++|
T Consensus       429 ~L~~L~l~~n~l~-~~~~~~l~~~L~~L~L~~N~l~~------ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          429 SILVLNLSSNMLT-GSVFRCLPPKVKVLDLHNNRIMS------IPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             TCCEEECCSSCCC-GGGGSSCCTTCSEEECCSSCCCC------CCTTTTSSCCCSEEECCSS
T ss_pred             cCCEEECCCCCCC-cchhhhhcCcCCEEECCCCcCcc------cChhhcCCCCCCEEECCCC
Confidence            5555555555421 1112222 355555555555555      5555555555555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=6.9e-15  Score=151.81  Aligned_cols=170  Identities=17%  Similarity=0.125  Sum_probs=136.7

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      +++++|+|++|.++.++. +|+++++|++|+|++|. +..+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            468999999999997754 69999999999999974 5555 45688999999999999654344447889999999999


Q ss_pred             ccCCCCCccCh-hhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCC----C
Q 045186           80 LDGTSITEVPS-SIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNL----K  150 (411)
Q Consensus        80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L----~  150 (411)
                      +++|.++.+|. .++.+++|++|++++|...   .+..++.+++|+.|++++|.+..      ++ ..++.+++|    +
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~~~~  180 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLHQMPLLNL  180 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE------ECGGGGHHHHTCTTCCC
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce------ecHHHccchhccchhhh
Confidence            99999998876 6899999999999999733   35679999999999999999988      64 567888888    8


Q ss_pred             EecccCcccccccCCCC--CCCceEEecCC
Q 045186          151 ELELEDCKRLQSLPQIP--PNLWLVRANGC  178 (411)
Q Consensus       151 ~L~L~~c~~l~~lp~l~--~~L~~L~~~~c  178 (411)
                      .|++++|..-...|...  .+|+.|++.++
T Consensus       181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  210 (570)
T 2z63_A          181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNN  210 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             hcccCCCCceecCHHHhccCcceeEecccc
Confidence            89999876433333322  35788887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=7.2e-15  Score=150.35  Aligned_cols=152  Identities=14%  Similarity=0.112  Sum_probs=128.6

Q ss_pred             CCceeEEEEeCCCCCc-ccccccCCCCccEEEEecCCCCc--ccccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCc
Q 045186            1 MECLRELLLDGTDIKE-LPVSIELLSGLVQLSLKGCKNLL--SLPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLL   76 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~si~~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~   76 (411)
                      +++|++|++++|.++. +|..++++++|++|+|++|....  .+|..+..+++|++|++++|.....+|.. +..+++|+
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            4789999999999995 78889999999999999975443  56677899999999999997655548865 78899999


Q ss_pred             EEEccCCCCC-ccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEec
Q 045186           77 ELYLDGTSIT-EVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELE  153 (411)
Q Consensus        77 ~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~  153 (411)
                      .|++++|.++ .+|..+.  ++|+.|++++|.. ..+..+..+++|+.|+|++|.++.      +|.. +..+++|+.|+
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS------VPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEE
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc------cCHHHhccCCcccEEE
Confidence            9999999997 5665543  7999999999983 334446699999999999999999      9976 88999999999


Q ss_pred             ccCcccc
Q 045186          154 LEDCKRL  160 (411)
Q Consensus       154 L~~c~~l  160 (411)
                      +++|+..
T Consensus       475 l~~N~~~  481 (520)
T 2z7x_B          475 LHTNPWD  481 (520)
T ss_dssp             CCSSCBC
T ss_pred             CcCCCCc
Confidence            9998743

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=9.1e-15  Score=142.50  Aligned_cols=177  Identities=15%  Similarity=0.162  Sum_probs=122.4

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L   78 (411)
                      +++++|+|++|.|+.+|. +|+++++|++|+|++|..++.+|. .+.++++|+.+.+.+++.+..+| ..++.+++|+.|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            478999999999999986 489999999999999876777765 46788888876666667777774 567899999999


Q ss_pred             EccCCCCCccChh-hhccCCCCEEecCCCCCCh---hHHHhhc-cccceeecCCCCccccccccccchhhhcCCCCCEec
Q 045186           79 YLDGTSITEVPSS-IELLHGLELLNLNNCKNLW---TTIIYIM-AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE  153 (411)
Q Consensus        79 ~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~---~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~  153 (411)
                      ++++|.++.+|.. +....++..|++.++..+.   ...+..+ ..|+.|+|++|.++.      +|..+....+|+.|+
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~------i~~~~f~~~~L~~l~  183 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE------IHNSAFNGTQLDELN  183 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE------ECTTSSTTEEEEEEE
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC------CChhhccccchhHHh
Confidence            9999999877653 3455566777776554221   1223333 356677777777766      665555555666666


Q ss_pred             ccCcccccccCCC----CCCCceEEecCCCCCCccc
Q 045186          154 LEDCKRLQSLPQI----PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       154 L~~c~~l~~lp~l----~~~L~~L~~~~c~~L~~l~  185 (411)
                      +.+++.++.+|.-    .++|+.|+++++ .|+.+|
T Consensus       184 l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp  218 (350)
T 4ay9_X          184 LSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP  218 (350)
T ss_dssp             CTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred             hccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence            6666666666541    145566666554 345444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.57  E-value=3.3e-14  Score=150.20  Aligned_cols=130  Identities=20%  Similarity=0.188  Sum_probs=91.7

Q ss_pred             CCceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcE
Q 045186            1 MECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLE   77 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~   77 (411)
                      +++|++|+|++|.++.+ |..++++++|++|+|++| .+..+|. .+.++++|++|++++|. +..+| ..++++++|++
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  125 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLIT  125 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCE
T ss_pred             CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCE
Confidence            35788888888888765 455788888888888875 5566665 47788888888888864 44444 56778888888


Q ss_pred             EEccCCCCCc-cChhhhccCCCCEEecCCCC--CChhHHHh--hccccceeecCCCCccc
Q 045186           78 LYLDGTSITE-VPSSIELLHGLELLNLNNCK--NLWTTIIY--IMAFARSFQFDGKEFIS  132 (411)
Q Consensus        78 L~L~~~~i~~-lp~~i~~l~~L~~L~L~~~~--~~~~~~l~--~l~~L~~L~Ls~n~~~~  132 (411)
                      |++++|.++. .|..++++++|+.|++++|.  ...+..+.  .+++|+.|++++|.+.+
T Consensus       126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             EECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             EECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence            8888888774 34557778888888888776  23333332  44677777777776655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=2e-14  Score=150.47  Aligned_cols=195  Identities=24%  Similarity=0.307  Sum_probs=120.2

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|+|++|.|+.+|.   .+++|++|+|++| .+..+|.   .+++|+.|++++| .+..+|..   +++|++|+|
T Consensus        80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~L  148 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSV  148 (622)
T ss_dssp             CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEEC
T ss_pred             CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEEC
Confidence            4689999999999998887   6788999999885 5677776   5677888888774 46666654   367777777


Q ss_pred             cCCCCCccChhhh-----------------ccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhh
Q 045186           81 DGTSITEVPSSIE-----------------LLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSI  143 (411)
Q Consensus        81 ~~~~i~~lp~~i~-----------------~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l  143 (411)
                      ++|.++.+|..+.                 .+++|+.|++++|....  .-..+++|+.|++++|.++.      +|.. 
T Consensus       149 s~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~------l~~~-  219 (622)
T 3g06_A          149 SDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLTS------LPAL-  219 (622)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSS------CCCC-
T ss_pred             cCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC--CCCccchhhEEECcCCcccc------cCCC-
Confidence            7777776654321                 12555555555554111  00123455556666665555      5532 


Q ss_pred             hcCCCCCEecccCcccccccCCCCCCCceEEecCCCCCCcccCCcCcchhhhcccCCCCCceEEEccCCCCCcccccCCC
Q 045186          144 SGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNE  223 (411)
Q Consensus       144 ~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~L~~l~~~~nl~~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~~~~  223 (411)
                        +++|+.|++++| .++.+|..+++|+.|+++++ .++.++.  .+  ..+..+.+..+.+      ..||.+|.....
T Consensus       220 --~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~lp~--~~--~~L~~L~Ls~N~L------~~lp~~l~~l~~  285 (622)
T 3g06_A          220 --PSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPM--LP--SGLLSLSVYRNQL------TRLPESLIHLSS  285 (622)
T ss_dssp             --CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCC------CSCCGGGGGSCT
T ss_pred             --CCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC-CCCcCCc--cc--ccCcEEeCCCCCC------CcCCHHHhhccc
Confidence              366777777775 46667766677788887776 4555554  11  1112222222211      267888877666


Q ss_pred             CceEEE
Q 045186          224 GSSITV  229 (411)
Q Consensus       224 ~~sl~~  229 (411)
                      ...+.+
T Consensus       286 L~~L~L  291 (622)
T 3g06_A          286 ETTVNL  291 (622)
T ss_dssp             TCEEEC
T ss_pred             cCEEEe
Confidence            655544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=1.3e-14  Score=150.14  Aligned_cols=157  Identities=20%  Similarity=0.315  Sum_probs=127.4

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +|+.|+|++|.|+.+|..+  +++|++|+|++| .++.+|   ..+++|++|+|++| .+..+|. +.+  +|+.|+|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            7899999999999999866  388999999995 677888   46789999999996 5666888 655  899999999


Q ss_pred             CCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS  162 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~  162 (411)
                      |.++.+|.   .+++|+.|++++|......  ..+++|+.|+|++|.+++      +|. +.  ++|+.|+|++| .++.
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp--~~l~~L~~L~Ls~N~L~~------lp~-l~--~~L~~L~Ls~N-~L~~  194 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTMLP--ELPTSLEVLSVRNNQLTF------LPE-LP--ESLEALDVSTN-LLES  194 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC------CCC-CC--TTCCEEECCSS-CCSS
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCcCC--CcCCCcCEEECCCCCCCC------cch-hh--CCCCEEECcCC-CCCc
Confidence            99999987   6899999999999832111  157899999999999999      987 65  89999999997 5778


Q ss_pred             cCCCCCCC-------ceEEecCCCCCCccc
Q 045186          163 LPQIPPNL-------WLVRANGCSSLVTLS  185 (411)
Q Consensus       163 lp~l~~~L-------~~L~~~~c~~L~~l~  185 (411)
                      +|.++.+|       +.|+++++ .++.+|
T Consensus       195 lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp  223 (571)
T 3cvr_A          195 LPAVPVRNHHSEETEIFFRCREN-RITHIP  223 (571)
T ss_dssp             CCCCC--------CCEEEECCSS-CCCCCC
T ss_pred             hhhHHHhhhcccccceEEecCCC-cceecC
Confidence            88876778       88888876 455554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.57  E-value=1.5e-14  Score=146.17  Aligned_cols=157  Identities=20%  Similarity=0.248  Sum_probs=108.3

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +|++|++++|.++.+|..   .++|++|++++| .+..+| .+..+++|++|++++| .+..+|..+   .+|++|++++
T Consensus       112 ~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~  182 (454)
T 1jl5_A          112 SLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN  182 (454)
T ss_dssp             TCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred             CCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence            455555555555544431   157888888885 455677 4788888888888885 455676543   5788888888


Q ss_pred             CCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS  162 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~  162 (411)
                      |.++.+| .++.+++|+.|++++|.....  -...++|+.|++++|.+..      +| .+..+++|+.|++++|. ++.
T Consensus       183 n~l~~l~-~~~~l~~L~~L~l~~N~l~~l--~~~~~~L~~L~l~~n~l~~------lp-~~~~l~~L~~L~l~~N~-l~~  251 (454)
T 1jl5_A          183 NQLEELP-ELQNLPFLTAIYADNNSLKKL--PDLPLSLESIVAGNNILEE------LP-ELQNLPFLTTIYADNNL-LKT  251 (454)
T ss_dssp             SCCSSCC-CCTTCTTCCEEECCSSCCSSC--CCCCTTCCEEECCSSCCSS------CC-CCTTCTTCCEEECCSSC-CSS
T ss_pred             CcCCcCc-cccCCCCCCEEECCCCcCCcC--CCCcCcccEEECcCCcCCc------cc-ccCCCCCCCEEECCCCc-CCc
Confidence            8888877 578888888888888762210  0123577888888887777      77 37777888888887754 556


Q ss_pred             cCCCCCCCceEEecCCC
Q 045186          163 LPQIPPNLWLVRANGCS  179 (411)
Q Consensus       163 lp~l~~~L~~L~~~~c~  179 (411)
                      +|..+++|+.|++++|.
T Consensus       252 l~~~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          252 LPDLPPSLEALNVRDNY  268 (454)
T ss_dssp             CCSCCTTCCEEECCSSC
T ss_pred             ccccccccCEEECCCCc
Confidence            77777777777777663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.57  E-value=1.6e-14  Score=132.39  Aligned_cols=129  Identities=25%  Similarity=0.313  Sum_probs=112.2

Q ss_pred             CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccch-hccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L   78 (411)
                      ++|++|+|++|.|+.+ |..+.++++|++|+|++| .+..+|.. +..+++|++|+|++| .+..+|. .++.+++|+.|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence            5799999999999977 566999999999999996 56777654 578999999999996 5666664 46889999999


Q ss_pred             EccCCCCCccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccc
Q 045186           79 YLDGTSITEVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        79 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      +|++|.++.+|..+..+++|+.|+|++|.  ......+..+++|+.|+|++|.+..
T Consensus       118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            99999999999999999999999999998  3344558899999999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=1.1e-14  Score=142.46  Aligned_cols=163  Identities=23%  Similarity=0.218  Sum_probs=122.5

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccc-cC-CCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEcc
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIA-IS-SLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLD   81 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~-i~-~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~   81 (411)
                      +.++++++.++.+|..+.  ..++.|+|++| .+..++.. +. .+++|++|+|++| .+..++ ..+.++++|+.|+|+
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence            468888888998887654  46889999985 56666544 44 7899999999985 455555 568889999999999


Q ss_pred             CCCCCccCh-hhhccCCCCEEecCCCCCC--hhHHHhhccccceeecCCCCccccccccccchhh----hcCCCCCEecc
Q 045186           82 GTSITEVPS-SIELLHGLELLNLNNCKNL--WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSI----SGLLNLKELEL  154 (411)
Q Consensus        82 ~~~i~~lp~-~i~~l~~L~~L~L~~~~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l----~~l~~L~~L~L  154 (411)
                      +|.++.++. .+..+++|+.|+|++|...  .+..+..+++|+.|+|++|.++.      +|..+    ..+++|+.|+|
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR------FPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS------CCGGGTC----CTTCCEEEC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe------eCHHHhcCcccCCcCCEEEC
Confidence            999997765 4788999999999998833  34558889999999999999998      88665    56899999999


Q ss_pred             cCcccccccCC-----CCC-CCceEEecCC
Q 045186          155 EDCKRLQSLPQ-----IPP-NLWLVRANGC  178 (411)
Q Consensus       155 ~~c~~l~~lp~-----l~~-~L~~L~~~~c  178 (411)
                      ++|. ++.+|.     ++. .++.|++.++
T Consensus       171 ~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          171 SSNK-LKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSC-CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCC-CCccCHHHhhhccHhhcceEEecCC
Confidence            9864 555552     221 1356676654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=6.7e-17  Score=167.65  Aligned_cols=154  Identities=16%  Similarity=0.079  Sum_probs=114.8

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCC-------------CCcccccccCCC--------------------
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCK-------------NLLSLPIAISSL--------------------   48 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~-------------~l~~lp~~i~~l--------------------   48 (411)
                      ++|+.|+|++|.|+.+|.+++++++|+.|++++|.             ..+.+|..++.+                    
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            57888999999999999999999999999986542             222233222222                    


Q ss_pred             ------------CCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhh
Q 045186           49 ------------KCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYI  116 (411)
Q Consensus        49 ------------~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~  116 (411)
                                  ..|+.|+|++| .++.+|. ++.+++|+.|+|++|.|+.+|..++.+++|+.|+|++|.......++.
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~  506 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN  506 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred             hhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCC
Confidence                        24677888884 5666776 778888888888888888888888888888888888887322226778


Q ss_pred             ccccceeecCCCCcccccccccc--chhhhcCCCCCEecccCcccccccC
Q 045186          117 MAFARSFQFDGKEFISCSFDVVF--SVSISGLLNLKELELEDCKRLQSLP  164 (411)
Q Consensus       117 l~~L~~L~Ls~n~~~~~~~~~~l--p~~l~~l~~L~~L~L~~c~~l~~lp  164 (411)
                      +++|+.|+|++|.+++      +  |..++.+++|+.|+|++|+ ++.+|
T Consensus       507 l~~L~~L~Ls~N~l~~------~~~p~~l~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          507 LPRLQELLLCNNRLQQ------SAAIQPLVSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             CSSCCEEECCSSCCCS------SSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             CCCCcEEECCCCCCCC------CCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence            8888888888888887      6  7788888888888888865 44443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.56  E-value=1.9e-14  Score=149.87  Aligned_cols=149  Identities=18%  Similarity=0.203  Sum_probs=115.7

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L   78 (411)
                      +++++|+|++|.|+.+|+ +|.++++|++|+|++| .+..+|. .+.++++|++|+|++| .++.+|. .++++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEE
Confidence            368899999999998875 5889999999999986 5666654 5788999999999995 5677764 57889999999


Q ss_pred             EccCCCCCccCh-hhhccCCCCEEecCCCCC---ChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCC---
Q 045186           79 YLDGTSITEVPS-SIELLHGLELLNLNNCKN---LWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLK---  150 (411)
Q Consensus        79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~---~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~---  150 (411)
                      +|++|.++.+|. .++++++|+.|++++|..   ..+..++.+++|++|++++|.+++      ++ ..+..+.+++   
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE------ECGGGGHHHHTCTTCC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc------cccccccchhhhhhhh
Confidence            999999998876 488899999999998873   234568889999999999998887      53 4555554443   


Q ss_pred             -EecccCcc
Q 045186          151 -ELELEDCK  158 (411)
Q Consensus       151 -~L~L~~c~  158 (411)
                       .++++.+.
T Consensus       204 ~~~~ls~n~  212 (635)
T 4g8a_A          204 LSLDLSLNP  212 (635)
T ss_dssp             CEEECTTCC
T ss_pred             hhhhcccCc
Confidence             45565543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.55  E-value=1.2e-14  Score=139.73  Aligned_cols=166  Identities=17%  Similarity=0.099  Sum_probs=133.1

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|+|++|.|+.++.    .++|++|++++| .+..++.  ..+++|++|++++|......|..++.+++|+.|++
T Consensus        79 l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  151 (317)
T 3o53_A           79 LSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (317)
T ss_dssp             CTTCCEEECCSSEEEEEEE----CTTCCEEECCSS-CCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred             cCCCCEEECcCCccccccC----CCCcCEEECCCC-ccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence            5789999999999987764    489999999996 5666654  34789999999996544444557888999999999


Q ss_pred             cCCCCCccC-hhh-hccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186           81 DGTSITEVP-SSI-ELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus        81 ~~~~i~~lp-~~i-~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      ++|.++.++ ..+ ..+++|+.|++++|..........+++|+.|+|++|.++.      +|..+..+++|+.|++++|.
T Consensus       152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~------l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF------MGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE------ECGGGGGGTTCSEEECTTSC
T ss_pred             CCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc------chhhhcccCcccEEECcCCc
Confidence            999999654 444 4789999999999984433334468999999999999999      98889999999999999974


Q ss_pred             cccccCCC---CCCCceEEecCCCC
Q 045186          159 RLQSLPQI---PPNLWLVRANGCSS  180 (411)
Q Consensus       159 ~l~~lp~l---~~~L~~L~~~~c~~  180 (411)
                       ++.+|..   .++|+.|++++++-
T Consensus       226 -l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          226 -LVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             -CCEECTTCCCCTTCCEEECTTCCC
T ss_pred             -ccchhhHhhcCCCCCEEEccCCCc
Confidence             6677753   26788888877653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=4.1e-14  Score=142.88  Aligned_cols=154  Identities=21%  Similarity=0.241  Sum_probs=68.0

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +|++|++++|.++.+|..   +++|++|++++| .+..+|..   .++|++|++++| .+..+| .++++++|++|++++
T Consensus        92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           92 HLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN  162 (454)
T ss_dssp             TCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred             CCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC
Confidence            344444444444444432   244555555443 33333321   134555555553 233344 245555555555555


Q ss_pred             CCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS  162 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~  162 (411)
                      |.++.+|..+   .+|+.|++++|.......++.+++|+.|++++|.+.+      +|...   ++|+.|++++|. ++.
T Consensus       163 N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~------l~~~~---~~L~~L~l~~n~-l~~  229 (454)
T 1jl5_A          163 NSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK------LPDLP---LSLESIVAGNNI-LEE  229 (454)
T ss_dssp             SCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS------CCCCC---TTCCEEECCSSC-CSS
T ss_pred             CcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc------CCCCc---CcccEEECcCCc-CCc
Confidence            5555444322   3455555555542111124445555555555555544      44321   345555555542 334


Q ss_pred             cCCCC--CCCceEEecCC
Q 045186          163 LPQIP--PNLWLVRANGC  178 (411)
Q Consensus       163 lp~l~--~~L~~L~~~~c  178 (411)
                      +|.+.  ++|+.|+++++
T Consensus       230 lp~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          230 LPELQNLPFLTTIYADNN  247 (454)
T ss_dssp             CCCCTTCTTCCEEECCSS
T ss_pred             ccccCCCCCCCEEECCCC
Confidence            44322  34455554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.54  E-value=3.6e-15  Score=147.03  Aligned_cols=179  Identities=16%  Similarity=0.180  Sum_probs=133.0

Q ss_pred             CCceeEEEEeCCCCCc-----ccccccCCCCccEEEEecCC--CCc-cccccc-------CCCCCccEEEeeCCCCCc--
Q 045186            1 MECLRELLLDGTDIKE-----LPVSIELLSGLVQLSLKGCK--NLL-SLPIAI-------SSLKCLRNLKLSGCSKLK--   63 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~-----lp~si~~l~~L~~L~L~~c~--~l~-~lp~~i-------~~l~~L~~L~Ls~c~~l~--   63 (411)
                      +++|++|+|++|.|..     ++..+..+++|++|+|++|.  .+. .+|..+       ..+++|++|+|++|....  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4689999999998874     34457789999999999962  222 345444       688999999999976544  


Q ss_pred             --ccchhccCCCCCcEEEccCCCCCc-----cChhhhcc---------CCCCEEecCCCCCC---hh---HHHhhccccc
Q 045186           64 --KFPQIVASMEDLLELYLDGTSITE-----VPSSIELL---------HGLELLNLNNCKNL---WT---TIIYIMAFAR  121 (411)
Q Consensus        64 --~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l---------~~L~~L~L~~~~~~---~~---~~l~~l~~L~  121 (411)
                        .+|..+..+++|++|+|++|.++.     ++..+..+         ++|+.|++++|...   .+   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              478888899999999999999872     33344455         89999999999843   22   2477889999


Q ss_pred             eeecCCCCccccccccccchhhhcCCCCCEecccCcccc----cccCC---CCCCCceEEecCCC
Q 045186          122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL----QSLPQ---IPPNLWLVRANGCS  179 (411)
Q Consensus       122 ~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l----~~lp~---l~~~L~~L~~~~c~  179 (411)
                      .|+|++|.+........+|..+..+++|+.|+|++|..-    ..+|.   -.++|+.|++++|.
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            999999988731001114447889999999999998742    34442   23679999998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.54  E-value=3.7e-14  Score=153.83  Aligned_cols=153  Identities=20%  Similarity=0.185  Sum_probs=125.3

Q ss_pred             CCceeEEEEeCCC-CCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh--ccCCCCCc
Q 045186            1 MECLRELLLDGTD-IKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI--VASMEDLL   76 (411)
Q Consensus         1 l~~L~~L~L~~~~-l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~--l~~l~~L~   76 (411)
                      +++|++|+|++|. +..+ |.+|+++++|++|+|++|......|..+.++++|++|+|++|...+.+|..  ++++++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            5789999999984 4477 667999999999999997655556889999999999999998766666665  88999999


Q ss_pred             EEEccCCCCCcc--ChhhhccCCCCEEecCCCC--CChhHHHhhc--cccceeecCCCCccccccccccchhhhcCCC--
Q 045186           77 ELYLDGTSITEV--PSSIELLHGLELLNLNNCK--NLWTTIIYIM--AFARSFQFDGKEFISCSFDVVFSVSISGLLN--  148 (411)
Q Consensus        77 ~L~L~~~~i~~l--p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~--  148 (411)
                      +|+|++|.++.+  +..++++++|+.|++++|.  ...+..+..+  ++|+.|++++|.+..     ..|..+..+.+  
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~  201 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS-----RVSVDWGKCMNPF  201 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC-----CCCCCCCSSSCTT
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc-----ccccchhhcCCcc
Confidence            999999999855  3579999999999999997  3334456665  899999999998876     34555555554  


Q ss_pred             ----CCEecccCcc
Q 045186          149 ----LKELELEDCK  158 (411)
Q Consensus       149 ----L~~L~L~~c~  158 (411)
                          |+.|++++|.
T Consensus       202 ~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          202 RNMVLEILDVSGNG  215 (844)
T ss_dssp             TTCCBSEEBCSSCC
T ss_pred             ccCceeEEecCCCc
Confidence                9999999884

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.6e-14  Score=122.91  Aligned_cols=125  Identities=18%  Similarity=0.101  Sum_probs=97.1

Q ss_pred             CCCccEEEEecCCCC-cccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCc-cChhhhccCCCCEE
Q 045186           24 LSGLVQLSLKGCKNL-LSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITE-VPSSIELLHGLELL  101 (411)
Q Consensus        24 l~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L  101 (411)
                      .++|+.|++++|... +.+|..+..+++|++|++++| .+..+ ..++.+++|+.|++++|.++. +|..++.+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467888888886433 377777778888888888885 45555 667788888888888888886 77777778888888


Q ss_pred             ecCCCCCCh-h--HHHhhccccceeecCCCCccccccccccch----hhhcCCCCCEecccC
Q 045186          102 NLNNCKNLW-T--TIIYIMAFARSFQFDGKEFISCSFDVVFSV----SISGLLNLKELELED  156 (411)
Q Consensus       102 ~L~~~~~~~-~--~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~----~l~~l~~L~~L~L~~  156 (411)
                      ++++|.... +  ..++.+++|+.|++++|.+++      +|.    .+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~------~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN------LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG------STTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc------hHHHHHHHHHHCCCcccccCCC
Confidence            888887333 2  458888999999999999988      775    688899999999864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=3.9e-14  Score=122.96  Aligned_cols=129  Identities=22%  Similarity=0.318  Sum_probs=112.3

Q ss_pred             CceeEEEEeCCCCC--cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIK--ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~--~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      ++|++|+|++|.++  .+|..+..+++|++|+|++|. +..+ ..+..+++|++|++++|.....+|..++.+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            57999999999998  899888999999999999975 6666 6688999999999999765555888888899999999


Q ss_pred             ccCCCCCccC--hhhhccCCCCEEecCCCC--CChh---HHHhhccccceeecCCCCccc
Q 045186           80 LDGTSITEVP--SSIELLHGLELLNLNNCK--NLWT---TIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        80 L~~~~i~~lp--~~i~~l~~L~~L~L~~~~--~~~~---~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      +++|.++.+|  ..+..+++|+.|++++|.  ....   ..+..+++|+.|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9999999877  688999999999999997  2222   368899999999999999888

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.53  E-value=4e-14  Score=128.93  Aligned_cols=130  Identities=23%  Similarity=0.333  Sum_probs=111.7

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~   79 (411)
                      ++|+.|+|++|.|+.++. .+..+++|++|+|++|......|..+..+++|++|+|++| .+..+|.. +..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence            479999999999998876 6899999999999997544444788999999999999995 56777764 68899999999


Q ss_pred             ccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccc
Q 045186           80 LDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      |++|.|+.+ |..+..+++|+.|+|++|.  ......+..+++|+.|+|++|.+..
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999999976 5678999999999999998  3444558899999999999998865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.53  E-value=4.2e-14  Score=128.74  Aligned_cols=130  Identities=16%  Similarity=0.185  Sum_probs=110.3

Q ss_pred             CceeEEEEeCCCCCcccc--cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELPV--SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~--si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      +.+++|+|++|.|+.+++  .+..+++|++|+|++| .+..++. .+..+++|++|+|++|......|..++.+++|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            367899999999998843  3899999999999996 4666654 78999999999999965544445568999999999


Q ss_pred             EccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccc
Q 045186           79 YLDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        79 ~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      +|++|.|+.+ |..+..+++|+.|+|++|.  ...+..+..+++|+.|+|++|.+..
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            9999999976 6779999999999999998  3445668999999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.53  E-value=4.1e-15  Score=146.65  Aligned_cols=178  Identities=13%  Similarity=0.062  Sum_probs=134.6

Q ss_pred             CCceeEEEEeCCCCC----cccccc-------cCCCCccEEEEecCCCCc----ccccccCCCCCccEEEeeCCCCCc--
Q 045186            1 MECLRELLLDGTDIK----ELPVSI-------ELLSGLVQLSLKGCKNLL----SLPIAISSLKCLRNLKLSGCSKLK--   63 (411)
Q Consensus         1 l~~L~~L~L~~~~l~----~lp~si-------~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~--   63 (411)
                      +++|++|+|++|.+.    .+|..+       .++++|++|+|++|....    .+|..+..+++|++|+|++|....  
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            478999999997655    345444       789999999999975444    377788899999999999976432  


Q ss_pred             --ccchhccCC---------CCCcEEEccCCCCC--ccC---hhhhccCCCCEEecCCCCCChh------H-HHhhcccc
Q 045186           64 --KFPQIVASM---------EDLLELYLDGTSIT--EVP---SSIELLHGLELLNLNNCKNLWT------T-IIYIMAFA  120 (411)
Q Consensus        64 --~lp~~l~~l---------~~L~~L~L~~~~i~--~lp---~~i~~l~~L~~L~L~~~~~~~~------~-~l~~l~~L  120 (411)
                        .++..+..+         ++|++|++++|.++  .+|   ..+..+++|+.|++++|.....      . .+..+++|
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L  218 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  218 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence              233344444         89999999999997  555   4677899999999999985422      2 57789999


Q ss_pred             ceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc----cCC-C----CCCCceEEecCCC
Q 045186          121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS----LPQ-I----PPNLWLVRANGCS  179 (411)
Q Consensus       121 ~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~----lp~-l----~~~L~~L~~~~c~  179 (411)
                      +.|+|++|.++. .....+|..+..+++|+.|+|++|..-..    ++. +    .++|+.|++++|.
T Consensus       219 ~~L~Ls~n~l~~-~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          219 KVLDLQDNTFTH-LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             CEEECCSSCCHH-HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cEEECcCCCCCc-HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            999999999841 11113888899999999999999873222    232 1    5789999998874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.52  E-value=5.2e-14  Score=137.75  Aligned_cols=149  Identities=19%  Similarity=0.198  Sum_probs=112.3

Q ss_pred             CceeEEEEeCCCCCccccc-cc-CCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccch-hccCCCCCcE
Q 045186            2 ECLRELLLDGTDIKELPVS-IE-LLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLE   77 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~s-i~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~   77 (411)
                      ++++.|+|++|.|+.++.. +. ++++|+.|+|++| .+..++ ..+..+++|++|+|++|. +..+|. .+..+++|+.
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCE
Confidence            3578889999888877655 54 7888999999885 555554 457888899999998854 555554 5778888999


Q ss_pred             EEccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHH---hhccccceeecCCCCccccccccccc-hhhhcCCC--
Q 045186           78 LYLDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTII---YIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLN--  148 (411)
Q Consensus        78 L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l---~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~--  148 (411)
                      |+|++|.|+.+ |..+..+++|+.|+|++|.  .+....+   ..+++|+.|+|++|.+..      +| ..+..++.  
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~l~~~~  190 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK------LPLTDLQKLPAWV  190 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC------CCHHHHHHSCHHH
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc------cCHHHhhhccHhh
Confidence            99999988865 5678888899999998887  2223333   668889999999998888      77 45667766  


Q ss_pred             CCEecccCcc
Q 045186          149 LKELELEDCK  158 (411)
Q Consensus       149 L~~L~L~~c~  158 (411)
                      |+.|+|++|+
T Consensus       191 l~~l~l~~N~  200 (361)
T 2xot_A          191 KNGLYLHNNP  200 (361)
T ss_dssp             HTTEECCSSC
T ss_pred             cceEEecCCC
Confidence            4778888876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.52  E-value=3e-14  Score=147.40  Aligned_cols=151  Identities=17%  Similarity=0.123  Sum_probs=125.6

Q ss_pred             CCceeEEEEeCCCCCc-ccccccCCCCccEEEEecCCCCcc---cccccCCCCCccEEEeeCCCCCcccchh-ccCCCCC
Q 045186            1 MECLRELLLDGTDIKE-LPVSIELLSGLVQLSLKGCKNLLS---LPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDL   75 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~si~~l~~L~~L~L~~c~~l~~---lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L   75 (411)
                      +++|++|++++|.++. +|..++++++|++|+|++| .+..   +|..+..+++|++|++++|.....+|.. +..+++|
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            4689999999999985 6788999999999999996 4554   4567889999999999997655547764 7789999


Q ss_pred             cEEEccCCCCC-ccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEe
Q 045186           76 LELYLDGTSIT-EVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKEL  152 (411)
Q Consensus        76 ~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L  152 (411)
                      +.|++++|.++ .+|..+.  ++|+.|++++|.. ..+..+..+++|+.|+|++|.+++      +|.. +..+++|+.|
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS------VPDGVFDRLTSLQYI  502 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC------CCTTSTTTCTTCCCE
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC------CCHHHHhcCCCCCEE
Confidence            99999999997 5554443  7999999999973 233345599999999999999999      9977 8899999999


Q ss_pred             cccCcccc
Q 045186          153 ELEDCKRL  160 (411)
Q Consensus       153 ~L~~c~~l  160 (411)
                      ++++|+..
T Consensus       503 ~l~~N~~~  510 (562)
T 3a79_B          503 WLHDNPWD  510 (562)
T ss_dssp             ECCSCCBC
T ss_pred             EecCCCcC
Confidence            99998743

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=5e-14  Score=119.79  Aligned_cols=123  Identities=22%  Similarity=0.289  Sum_probs=83.5

Q ss_pred             CceeEEEEeCCCCC--cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIK--ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~--~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (411)
                      ++|+.|++++|.++  .+|..++.+++|++|++++| .+..+ ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45777777777776  67766677777777777775 45555 4566777777777777554444666666677777777


Q ss_pred             ccCCCCCccC--hhhhccCCCCEEecCCCCC--Chh---HHHhhccccceeecC
Q 045186           80 LDGTSITEVP--SSIELLHGLELLNLNNCKN--LWT---TIIYIMAFARSFQFD  126 (411)
Q Consensus        80 L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~--~~~---~~l~~l~~L~~L~Ls  126 (411)
                      +++|.++.+|  ..++.+++|+.|++++|..  ...   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777777654  5677777777777777762  222   346777777777765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=9.2e-14  Score=143.84  Aligned_cols=152  Identities=16%  Similarity=0.200  Sum_probs=122.6

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++|++|+|++|.|+.+|   ..+++|++|+|++| .+..+|. +..  +|++|+|++| .++.+|.   .+++|+.|+|+
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls  148 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINAD  148 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCC
Confidence            57999999999999999   56899999999996 6677888 655  9999999995 5666887   68999999999


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccchhhhcCCCC-------CEec
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNL-------KELE  153 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L-------~~L~  153 (411)
                      +|.|+.+|.   .+++|+.|+|++|... .+. +.  ++|+.|+|++|.++.      +|. +..  +|       +.|+
T Consensus       149 ~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~------lp~-~~~--~L~~~~~~L~~L~  213 (571)
T 3cvr_A          149 NNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES------LPA-VPV--RNHHSEETEIFFR  213 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS------CCC-CC----------CCEEEE
T ss_pred             CCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc------hhh-HHH--hhhcccccceEEe
Confidence            999999987   6789999999999822 222 43  899999999999998      887 544  77       9999


Q ss_pred             ccCcccccccCCC---CCCCceEEecCCCC
Q 045186          154 LEDCKRLQSLPQI---PPNLWLVRANGCSS  180 (411)
Q Consensus       154 L~~c~~l~~lp~l---~~~L~~L~~~~c~~  180 (411)
                      |++|. ++.+|..   .++|+.|++++++-
T Consensus       214 Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          214 CRENR-ITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CCSSC-CCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             cCCCc-ceecCHHHhcCCCCCEEEeeCCcC
Confidence            99974 6677652   26788888887753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=1.3e-14  Score=154.91  Aligned_cols=113  Identities=15%  Similarity=0.145  Sum_probs=64.6

Q ss_pred             cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCC
Q 045186           18 PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHG   97 (411)
Q Consensus        18 p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~   97 (411)
                      |..+..+++|+.|+|++| .+..+|..+..+++|++|+|++| .+..+|..++++++|+.|+|++|.|+.+|..++.+++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            344556666666666664 34456655556666666666663 3446666666666666666666666666666666666


Q ss_pred             CCEEecCCCC-CChhHHHhhccccceeecCCCCccc
Q 045186           98 LELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        98 L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      |+.|+|++|. ...+..++.+++|+.|+|++|.+++
T Consensus       295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            6666666665 1222235666666666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=3.5e-14  Score=151.46  Aligned_cols=169  Identities=18%  Similarity=0.178  Sum_probs=102.0

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEec----CCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKG----CKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~----c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      .++.|.|.++.+..++..+.....|..+.+..    ++.+...|..+..+++|+.|+|++| .+..+|..+.++++|+.|
T Consensus       174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             ------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCC
T ss_pred             ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEE
Confidence            46788888888887776655555555555443    2344456777889999999999995 467899888899999999


Q ss_pred             EccCCCCCccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186           79 YLDGTSITEVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC  157 (411)
Q Consensus        79 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c  157 (411)
                      +|++|.|+.+|..++.+++|+.|+|++|.. ..+..++.+++|++|+|++|.+..      +|..++.+++|+.|+|++|
T Consensus       253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT------LPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC------CCSSTTSCTTCCCEECTTS
T ss_pred             EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc------cChhhhcCCCccEEeCCCC
Confidence            999999999999999999999999999983 334558999999999999999999      9999999999999999998


Q ss_pred             ccccccC----------------------CCCCCCceEEecCC
Q 045186          158 KRLQSLP----------------------QIPPNLWLVRANGC  178 (411)
Q Consensus       158 ~~l~~lp----------------------~l~~~L~~L~~~~c  178 (411)
                      +....+|                      .+|..|..|++..+
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD  369 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence            7543332                      34567777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.9e-13  Score=119.72  Aligned_cols=128  Identities=13%  Similarity=0.130  Sum_probs=96.5

Q ss_pred             ccCCCCccEEEEecCCCCcccccccCCCC-CccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhh-hccCCC
Q 045186           21 IELLSGLVQLSLKGCKNLLSLPIAISSLK-CLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSI-ELLHGL   98 (411)
Q Consensus        21 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L   98 (411)
                      +.++.+|+.|++++| .+..+|. +..+. +|++|++++| .+..+ ..++.+++|+.|++++|.++.+|..+ +.+++|
T Consensus        15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            667778888888885 5566654 44444 8888888885 45555 56777888888888888888777654 788888


Q ss_pred             CEEecCCCCCC-hhH--HHhhccccceeecCCCCccccccccccchh----hhcCCCCCEecccCcc
Q 045186           99 ELLNLNNCKNL-WTT--IIYIMAFARSFQFDGKEFISCSFDVVFSVS----ISGLLNLKELELEDCK  158 (411)
Q Consensus        99 ~~L~L~~~~~~-~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~----l~~l~~L~~L~L~~c~  158 (411)
                      +.|++++|... .+.  .+..+++|+.|++++|.+..      +|..    +..+++|+.|++++|.
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~------~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN------KKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG------STTHHHHHHHHCTTCSEETTEECC
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC------cHhHHHHHHHHCCccceeCCCcCC
Confidence            88888888732 232  47788888888888888888      8864    7888899999988875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.4e-13  Score=120.64  Aligned_cols=128  Identities=19%  Similarity=0.233  Sum_probs=108.6

Q ss_pred             CCceeEEEEeCCCCCcccccccCCC-CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhc-cCCCCCcEE
Q 045186            1 MECLRELLLDGTDIKELPVSIELLS-GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIV-ASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L   78 (411)
                      +++|++|++++|.++.+|. +..+. +|++|+|++| .+..+ ..+..+++|++|++++| .+..+|..+ +.+++|+.|
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEE
Confidence            3689999999999998876 55555 9999999996 56677 56889999999999995 567777554 889999999


Q ss_pred             EccCCCCCccCh--hhhccCCCCEEecCCCCCC-hhH----HHhhccccceeecCCCCccc
Q 045186           79 YLDGTSITEVPS--SIELLHGLELLNLNNCKNL-WTT----IIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        79 ~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~-~~~----~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      ++++|.|+.+|.  .+..+++|+.|++++|... .+.    .+..+++|+.|++++|....
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999999997  8999999999999999832 222    48999999999999998766

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=1.6e-13  Score=122.23  Aligned_cols=125  Identities=22%  Similarity=0.235  Sum_probs=89.0

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccc--cCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIA--ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~--i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      ++|++++++++.+|..+..  +|++|+|++| .+..++..  +..+++|++|+|++|...+..|..++.+++|++|+|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5678888888888876543  7888888885 56666543  67888888888888654444467788888888888888


Q ss_pred             CCCCccChh-hhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccc
Q 045186           83 TSITEVPSS-IELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        83 ~~i~~lp~~-i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      |.|+.++.. +..+++|+.|+|++|..  ..+..+..+++|+.|+|++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            888866543 67777777777777762  223446666677777777766654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.44  E-value=6.2e-13  Score=129.46  Aligned_cols=182  Identities=19%  Similarity=0.201  Sum_probs=138.6

Q ss_pred             CCceeEEEEeCCCCC-cccc-cccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccch-hccCCCCCc
Q 045186            1 MECLRELLLDGTDIK-ELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLL   76 (411)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~-si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~   76 (411)
                      |++|++|+|++|.+. .+|. +|.++++|..+.+.+++.+..+ |..+..+++|++|++++| .+..+|. .+....++.
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~  131 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKV  131 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCE
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhh
Confidence            578999999999985 4664 4889999887666655778877 456789999999999995 4565654 344566788


Q ss_pred             EEEccC-CCCCccChh-hhcc-CCCCEEecCCCCCC-hhHHHhhccccceeecCC-CCccccccccccch-hhhcCCCCC
Q 045186           77 ELYLDG-TSITEVPSS-IELL-HGLELLNLNNCKNL-WTTIIYIMAFARSFQFDG-KEFISCSFDVVFSV-SISGLLNLK  150 (411)
Q Consensus        77 ~L~L~~-~~i~~lp~~-i~~l-~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~lp~-~l~~l~~L~  150 (411)
                      .|++.+ +.+..+|.. +..+ ..|+.|++++|... .+.......+|+.|++++ |.+..      +|. .+..+++|+
T Consensus       132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~------i~~~~f~~l~~L~  205 (350)
T 4ay9_X          132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE------LPNDVFHGASGPV  205 (350)
T ss_dssp             EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCC------CCTTTTTTEECCS
T ss_pred             hhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccC------CCHHHhccCcccc
Confidence            888865 578877754 4444 46899999998732 223344567899999975 67777      885 468899999


Q ss_pred             EecccCcccccccCC-CCCCCceEEecCCCCCCcccCCcCc
Q 045186          151 ELELEDCKRLQSLPQ-IPPNLWLVRANGCSSLVTLSGALNL  190 (411)
Q Consensus       151 ~L~L~~c~~l~~lp~-l~~~L~~L~~~~c~~L~~l~~~~nl  190 (411)
                      .|+|++| .++.+|. ...+|+.|.+.++..|+.+|.+.++
T Consensus       206 ~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l  245 (350)
T 4ay9_X          206 ILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKL  245 (350)
T ss_dssp             EEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTC
T ss_pred             hhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhC
Confidence            9999997 5888875 4588999999999999999875544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.44  E-value=2.3e-13  Score=141.64  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=71.1

Q ss_pred             CCceeEEEEeCCCCCc---ccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCc
Q 045186            1 MECLRELLLDGTDIKE---LPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLL   76 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~---lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~   76 (411)
                      +++|+.|++++|.+..   .+..+..+.+|++|++..+ ....++..+..+++|+.+++++++.....+ ..+..+.+++
T Consensus       370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             ccccccchhhccccccccccccchhhhhhhhhhhcccc-ccccccccccccccccchhhhhccccccccccccccccccc
Confidence            4577888888877652   3444556666777766654 233334444455555555555543332222 2233444444


Q ss_pred             EEEccCCCCC-ccChhhhccCCCCEEecCCCCC---ChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCE
Q 045186           77 ELYLDGTSIT-EVPSSIELLHGLELLNLNNCKN---LWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKE  151 (411)
Q Consensus        77 ~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~---~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~  151 (411)
                      .++++.|.+. ..|..+..+++|+.|++++|..   ..+..+..+++|+.|+|++|++++      + |..+..+++|+.
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~------l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQV  522 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCE
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC------cChHHHcCCCCCCE
Confidence            4444444444 2222334444444444444431   112224444444444444444444      3 233444444444


Q ss_pred             ecccCc
Q 045186          152 LELEDC  157 (411)
Q Consensus       152 L~L~~c  157 (411)
                      |+|++|
T Consensus       523 L~Ls~N  528 (635)
T 4g8a_A          523 LNMSHN  528 (635)
T ss_dssp             EECTTS
T ss_pred             EECCCC
Confidence            444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.43  E-value=4.3e-13  Score=119.54  Aligned_cols=98  Identities=26%  Similarity=0.385  Sum_probs=52.9

Q ss_pred             EEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCC
Q 045186            6 ELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTS   84 (411)
Q Consensus         6 ~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~   84 (411)
                      +++++++.++.+|..+.  ++|++|+|++| .+..+|..+..+++|+.|+|++|. +..++ ..+.++++|++|+|++|.
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc
Confidence            45556666666665432  45666666653 445555555566666666666643 33333 345556666666666666


Q ss_pred             CCccCh-hhhccCCCCEEecCCCC
Q 045186           85 ITEVPS-SIELLHGLELLNLNNCK  107 (411)
Q Consensus        85 i~~lp~-~i~~l~~L~~L~L~~~~  107 (411)
                      |+.++. .+..+++|+.|+|++|.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCC
Confidence            664443 34444445544444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.41  E-value=1.1e-13  Score=135.34  Aligned_cols=175  Identities=15%  Similarity=0.111  Sum_probs=111.5

Q ss_pred             CceeEEEEeCCCCCccc-----ccccCCC-CccEEEEecCCCCcccccccCCC-----CCccEEEeeCCCCCcccchh--
Q 045186            2 ECLRELLLDGTDIKELP-----VSIELLS-GLVQLSLKGCKNLLSLPIAISSL-----KCLRNLKLSGCSKLKKFPQI--   68 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-----~si~~l~-~L~~L~L~~c~~l~~lp~~i~~l-----~~L~~L~Ls~c~~l~~lp~~--   68 (411)
                      ++|++|+|++|.|..++     ..+.+++ +|++|+|++|......+..+..+     ++|++|+|++|......+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            35888888888888665     4577777 88888888864333334444443     78888888886533333332  


Q ss_pred             --ccCC-CCCcEEEccCCCCCccCh-hh----hc-cCCCCEEecCCCCCCh------hHHHhhcc-ccceeecCCCCccc
Q 045186           69 --VASM-EDLLELYLDGTSITEVPS-SI----EL-LHGLELLNLNNCKNLW------TTIIYIMA-FARSFQFDGKEFIS  132 (411)
Q Consensus        69 --l~~l-~~L~~L~L~~~~i~~lp~-~i----~~-l~~L~~L~L~~~~~~~------~~~l~~l~-~L~~L~Ls~n~~~~  132 (411)
                        +..+ ++|+.|+|++|.++..+. .+    .. .++|+.|++++|....      ...+..++ +|++|+|++|.+..
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              3444 788888888888885553 22    23 3588888888887221      12244554 88888888888876


Q ss_pred             cccccccchhhhcC-CCCCEecccCcccccc-----cCC----CCCCCceEEecCC
Q 045186          133 CSFDVVFSVSISGL-LNLKELELEDCKRLQS-----LPQ----IPPNLWLVRANGC  178 (411)
Q Consensus       133 ~~~~~~lp~~l~~l-~~L~~L~L~~c~~l~~-----lp~----l~~~L~~L~~~~c  178 (411)
                      . ....+...+..+ ++|+.|+|++|. ++.     ++.    .+++|++|++++|
T Consensus       182 ~-~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          182 K-NCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             S-CHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             h-hHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence            0 000011234445 588888888875 433     332    3467888888776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=9.3e-15  Score=130.69  Aligned_cols=125  Identities=22%  Similarity=0.305  Sum_probs=78.1

Q ss_pred             eeEEEEeCC--CCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            4 LRELLLDGT--DIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         4 L~~L~L~~~--~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      |+.+.+.++  .++.+|..++.+++|++|+|++| .+..+| .+..+++|++|++++| .+..+|..++.+++|+.|+++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence            444455443  45555556777777777777764 455566 5666677777777774 345666666566677777777


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCCh-h--HHHhhccccceeecCCCCccc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNLW-T--TIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~--~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      +|.++.+| .++.+++|+.|++++|.... +  ..+..+++|+.|++++|.+..
T Consensus       102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            77777665 46666777777777665322 1  236666677777777766655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.39  E-value=8.2e-13  Score=117.51  Aligned_cols=123  Identities=18%  Similarity=0.264  Sum_probs=101.3

Q ss_pred             cEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch--hccCCCCCcEEEccCCCCCcc-ChhhhccCCCCEEecC
Q 045186           28 VQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ--IVASMEDLLELYLDGTSITEV-PSSIELLHGLELLNLN  104 (411)
Q Consensus        28 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~  104 (411)
                      +.+++++ +.++.+|..+..  +|++|++++| .++.++.  .++.+++|++|+|++|.|+.+ |..+..+++|+.|+|+
T Consensus        11 ~~l~~s~-~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTT-SCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCC-CCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            6889888 577889886643  8999999995 5666665  388999999999999999966 6789999999999999


Q ss_pred             CCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccc
Q 045186          105 NCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKR  159 (411)
Q Consensus       105 ~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~  159 (411)
                      +|..  ..+..+..+++|+.|+|++|.+++     ..|..+..+++|+.|+|++|+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISC-----VMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCe-----eCHHHhhcCCCCCEEEeCCCCc
Confidence            9983  333447889999999999999988     2367788899999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.39  E-value=1.1e-12  Score=135.91  Aligned_cols=119  Identities=18%  Similarity=0.140  Sum_probs=94.2

Q ss_pred             CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCC
Q 045186           26 GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN  105 (411)
Q Consensus        26 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~  105 (411)
                      .|+.|+|++| .+..+|. +..+++|+.|+|++| .+..+|..++.+++|+.|+|++|.|+.+| .++.+++|+.|+|++
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            4788888885 6667876 888888888888885 56688888888888888888888888887 788888888888888


Q ss_pred             CC--CCh-hHHHhhccccceeecCCCCccccccccccchhh----hcCCCCCEecc
Q 045186          106 CK--NLW-TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSI----SGLLNLKELEL  154 (411)
Q Consensus       106 ~~--~~~-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l----~~l~~L~~L~L  154 (411)
                      |.  ... +..++.+++|+.|+|++|.+++      +|..+    ..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~------~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ------EEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG------SSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCC------CccHHHHHHHHCcccCccCC
Confidence            87  232 5668888899999999999888      66433    44788988864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.39  E-value=1.9e-12  Score=113.26  Aligned_cols=124  Identities=22%  Similarity=0.350  Sum_probs=83.1

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccC
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDG   82 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~   82 (411)
                      +.+++++++++.+|..+  .++|+.|+|++|. +..+|. .+..+++|++|++++| .+..+|. .++.+++|+.|++++
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence            56777888888887644  3678888888854 555554 3567888888888885 4555554 457788888888888


Q ss_pred             CCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccc
Q 045186           83 TSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        83 ~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      |.++.+|.. +..+++|+.|++++|.  ......+..+++|+.|+|++|.+..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            888876654 4667777777777665  2222334556666666666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.37  E-value=2.3e-13  Score=133.12  Aligned_cols=174  Identities=13%  Similarity=0.076  Sum_probs=121.4

Q ss_pred             ceeEEEEeCCCCCcc-cccccCC-----CCccEEEEecCCCCcccccc----cCCC-CCccEEEeeCCCCCcccc-hh--
Q 045186            3 CLRELLLDGTDIKEL-PVSIELL-----SGLVQLSLKGCKNLLSLPIA----ISSL-KCLRNLKLSGCSKLKKFP-QI--   68 (411)
Q Consensus         3 ~L~~L~L~~~~l~~l-p~si~~l-----~~L~~L~L~~c~~l~~lp~~----i~~l-~~L~~L~Ls~c~~l~~lp-~~--   68 (411)
                      +|++|+|++|.|... +..+..+     ++|++|+|++|......+..    +..+ ++|++|+|++|. ++..+ ..  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHH
Confidence            799999999999855 4445554     89999999997533333332    4445 799999999976 44333 22  


Q ss_pred             --ccC-CCCCcEEEccCCCCC-----ccChhhhccC-CCCEEecCCCCCC--hhH----HHhhc-cccceeecCCCCccc
Q 045186           69 --VAS-MEDLLELYLDGTSIT-----EVPSSIELLH-GLELLNLNNCKNL--WTT----IIYIM-AFARSFQFDGKEFIS  132 (411)
Q Consensus        69 --l~~-l~~L~~L~L~~~~i~-----~lp~~i~~l~-~L~~L~L~~~~~~--~~~----~l~~l-~~L~~L~Ls~n~~~~  132 (411)
                        +.. .++|++|+|++|.++     .++..+..++ +|+.|+|++|...  ...    .+..+ ++|+.|+|++|.+..
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence              444 369999999999988     4445556665 9999999999732  221    24555 599999999998876


Q ss_pred             cccccccchhhhcC-CCCCEecccCcccccccC--------CCCCCCceEEecCCC
Q 045186          133 CSFDVVFSVSISGL-LNLKELELEDCKRLQSLP--------QIPPNLWLVRANGCS  179 (411)
Q Consensus       133 ~~~~~~lp~~l~~l-~~L~~L~L~~c~~l~~lp--------~l~~~L~~L~~~~c~  179 (411)
                       .....++..+..+ ++|+.|+|++|. ++..+        .-.++|+.|++++|.
T Consensus       211 -~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          211 -KSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             -SCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             -hHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence             2223355566664 599999999975 44332        223678888888774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.35  E-value=5.1e-13  Score=134.21  Aligned_cols=170  Identities=21%  Similarity=0.206  Sum_probs=122.5

Q ss_pred             CceeEEEEeCCCCCc-----ccccccCCCCccEEEEecCCCCcc-----c-ccccCCCCCccEEEeeCCCCCcc-----c
Q 045186            2 ECLRELLLDGTDIKE-----LPVSIELLSGLVQLSLKGCKNLLS-----L-PIAISSLKCLRNLKLSGCSKLKK-----F   65 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~-----lp~si~~l~~L~~L~L~~c~~l~~-----l-p~~i~~l~~L~~L~Ls~c~~l~~-----l   65 (411)
                      ++|++|+|++|.++.     ++..+..+++|++|+|++| .++.     + +.....+++|++|++++|. ++.     +
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l  276 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDL  276 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHH
Confidence            589999999999885     5777888999999999997 4443     2 2223368899999999974 544     7


Q ss_pred             chhccCCCCCcEEEccCCCCC-ccChhhhc-----cCCCCEEecCCCCCCh------hHHHhhccccceeecCCCCcccc
Q 045186           66 PQIVASMEDLLELYLDGTSIT-EVPSSIEL-----LHGLELLNLNNCKNLW------TTIIYIMAFARSFQFDGKEFISC  133 (411)
Q Consensus        66 p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~-----l~~L~~L~L~~~~~~~------~~~l~~l~~L~~L~Ls~n~~~~~  133 (411)
                      +..+..+++|++|++++|.++ ..+..+..     .++|+.|++++|....      ...+..+++|+.|+|++|.+.. 
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-  355 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-  355 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-
T ss_pred             HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-
Confidence            777888899999999999887 22223332     2689999999988432      2336778899999999998776 


Q ss_pred             cccccc-chhhhc-----CCCCCEecccCccccc----ccCCC---CCCCceEEecCCC
Q 045186          134 SFDVVF-SVSISG-----LLNLKELELEDCKRLQ----SLPQI---PPNLWLVRANGCS  179 (411)
Q Consensus       134 ~~~~~l-p~~l~~-----l~~L~~L~L~~c~~l~----~lp~l---~~~L~~L~~~~c~  179 (411)
                           . +..+..     .++|+.|++++|..-.    .+|..   .++|++|++++|.
T Consensus       356 -----~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          356 -----AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             -----HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             -----ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence                 3 223322     6789999999885321    34432   3678888888763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=4.2e-12  Score=113.09  Aligned_cols=104  Identities=25%  Similarity=0.343  Sum_probs=89.3

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEE
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELY   79 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~   79 (411)
                      ++|++|+|++|.|+.+|..+.++++|+.|+|++| .+..++ ..+..+++|++|+|++|. +..++ ..++.+++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEE
Confidence            4799999999999999999999999999999996 455554 568899999999999965 55555 5789999999999


Q ss_pred             ccCCCCCccChh-hhccCCCCEEecCCCC
Q 045186           80 LDGTSITEVPSS-IELLHGLELLNLNNCK  107 (411)
Q Consensus        80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~  107 (411)
                      |++|.|+.+|.. +..+++|+.|++++|.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            999999988874 7778888888888776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.32  E-value=7.3e-12  Score=109.52  Aligned_cols=124  Identities=20%  Similarity=0.302  Sum_probs=100.4

Q ss_pred             ccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecC
Q 045186           27 LVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLN  104 (411)
Q Consensus        27 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~  104 (411)
                      .+.+++++ +.+..+|..+  .++|+.|++++|. +..+|. .++.+++|++|++++|.++.+|.. ++.+++|+.|+++
T Consensus         9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            56788887 5678888654  4799999999965 556654 568899999999999999988765 6889999999999


Q ss_pred             CCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCcccc
Q 045186          105 NCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCKRL  160 (411)
Q Consensus       105 ~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c~~l  160 (411)
                      +|.  ......+..+++|+.|++++|.+++      +|.. +..+++|+.|++++|+..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS------VPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceE------eCHHHhcCCcccCEEEecCCCee
Confidence            997  3334457889999999999999988      8865 477899999999988643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.32  E-value=8.8e-13  Score=132.46  Aligned_cols=175  Identities=21%  Similarity=0.204  Sum_probs=130.7

Q ss_pred             CCceeEEEEeCCCCCcc-ccccc-----CCCCccEEEEecCCCCcc-----cccccCCCCCccEEEeeCCCCCcc-----
Q 045186            1 MECLRELLLDGTDIKEL-PVSIE-----LLSGLVQLSLKGCKNLLS-----LPIAISSLKCLRNLKLSGCSKLKK-----   64 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~si~-----~l~~L~~L~L~~c~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l~~-----   64 (411)
                      +++|++|+|++|.+... +..+.     ..++|++|+|++|. +..     ++..+..+++|++|++++|. ++.     
T Consensus       169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~  246 (461)
T 1z7x_W          169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAE  246 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHH
T ss_pred             CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHH
Confidence            47899999999998743 22232     36799999999974 443     67777789999999999974 443     


Q ss_pred             c-chhccCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCCCChhH--HHh-----hccccceeecCCCCcc
Q 045186           65 F-PQIVASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCKNLWTT--IIY-----IMAFARSFQFDGKEFI  131 (411)
Q Consensus        65 l-p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~--~l~-----~l~~L~~L~Ls~n~~~  131 (411)
                      + +.....+++|+.|++++|.++.     ++..+..+++|+.|++++|......  .+.     ..++|+.|++++|.++
T Consensus       247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence            2 2233468999999999999996     7888889999999999999732221  122     2369999999999987


Q ss_pred             ccccccccchhhhcCCCCCEecccCccccccc---------CCCCCCCceEEecCCC
Q 045186          132 SCSFDVVFSVSISGLLNLKELELEDCKRLQSL---------PQIPPNLWLVRANGCS  179 (411)
Q Consensus       132 ~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~l---------p~l~~~L~~L~~~~c~  179 (411)
                      . .....++..+..+++|+.|+|++|. ++..         ....++|+.|++++|.
T Consensus       327 ~-~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          327 A-ACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             G-GGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             h-HHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            6 1122256778889999999999985 4332         1124689999999883

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=4e-14  Score=126.55  Aligned_cols=130  Identities=18%  Similarity=0.210  Sum_probs=106.4

Q ss_pred             ccEEEEecC-CCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCC
Q 045186           27 LVQLSLKGC-KNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN  105 (411)
Q Consensus        27 L~~L~L~~c-~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~  105 (411)
                      |+.+.+.++ ..++.+|..+..+++|++|++++| .+..+| .++.+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            444444442 134556668889999999999996 566688 78889999999999999999999899999999999999


Q ss_pred             CCCChhHHHhhccccceeecCCCCccccccccccch--hhhcCCCCCEecccCcccccccC
Q 045186          106 CKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV--SISGLLNLKELELEDCKRLQSLP  164 (411)
Q Consensus       106 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~--~l~~l~~L~~L~L~~c~~l~~lp  164 (411)
                      |.......+..+++|+.|++++|.+..      ++.  .+..+++|+.|++++|+....+|
T Consensus       103 N~l~~l~~~~~l~~L~~L~l~~N~i~~------~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          103 NQIASLSGIEKLVNLRVLYMSNNKITN------WGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EECCCHHHHHHHHHSSEEEESEEECCC------HHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             CcCCcCCccccCCCCCEEECCCCcCCc------hhHHHHHhcCCCCCEEEecCCccccccc
Confidence            984444468899999999999999998      774  78899999999999987544433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.20  E-value=7e-12  Score=129.91  Aligned_cols=127  Identities=19%  Similarity=0.117  Sum_probs=60.6

Q ss_pred             CCCCccEEEEecCCCCcccccccCC-CC-CccEEEeeCCCCCc--ccchhccCCCCCcEEEccCCCCCc-----cChhhh
Q 045186           23 LLSGLVQLSLKGCKNLLSLPIAISS-LK-CLRNLKLSGCSKLK--KFPQIVASMEDLLELYLDGTSITE-----VPSSIE   93 (411)
Q Consensus        23 ~l~~L~~L~L~~c~~l~~lp~~i~~-l~-~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~   93 (411)
                      ++++|++|+|++|......+..+.. ++ +|++|+|++|..+.  .++.....+++|++|+|++|.++.     ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            5666666666665322222222322 22 36666666654221  122233345566666666665431     223344


Q ss_pred             ccCCCCEEecCCCCCC--h----hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186           94 LLHGLELLNLNNCKNL--W----TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE  155 (411)
Q Consensus        94 ~l~~L~~L~L~~~~~~--~----~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~  155 (411)
                      .+++|+.|++++|...  .    ...+..+++|+.|++++|.+.+      +|..+..+++|+.|+++
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~------l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE------LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG------GHHHHHHCTTCCEEEEC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH------HHHHHhhhhHHHhhccc
Confidence            5556666666555422  1    1124455566666666655554      44444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=7.2e-11  Score=103.28  Aligned_cols=99  Identities=20%  Similarity=0.304  Sum_probs=57.4

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEEEccC
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLELYLDG   82 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~   82 (411)
                      +.++++++.+..+|..+.  ++|++|+|++|. +..+ |..+..+++|++|+|++| .+..+|.. ++.+++|+.|+|++
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            456666666666665443  566666666643 3333 445566666666666663 45555543 35666666666666


Q ss_pred             CCCCccChh-hhccCCCCEEecCCCC
Q 045186           83 TSITEVPSS-IELLHGLELLNLNNCK  107 (411)
Q Consensus        83 ~~i~~lp~~-i~~l~~L~~L~L~~~~  107 (411)
                      |.|+.+|.. +..+++|+.|+|++|.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCC
Confidence            666665553 5555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.19  E-value=6.6e-11  Score=103.03  Aligned_cols=100  Identities=21%  Similarity=0.291  Sum_probs=66.6

Q ss_pred             eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEEEcc
Q 045186            4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLELYLD   81 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~   81 (411)
                      .+.|+++++.++.+|..+.  ++|++|+|++| .+..+ |..+..+++|++|+|++| .+..+|.. +..+++|+.|+|+
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence            3567777777777776553  67777777775 44444 555677777777777774 45555543 4677777777777


Q ss_pred             CCCCCccChh-hhccCCCCEEecCCCC
Q 045186           82 GTSITEVPSS-IELLHGLELLNLNNCK  107 (411)
Q Consensus        82 ~~~i~~lp~~-i~~l~~L~~L~L~~~~  107 (411)
                      +|.|+.+|.. +..+++|+.|+|++|.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            7777766653 5666666666666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.16  E-value=1e-10  Score=102.31  Aligned_cols=103  Identities=17%  Similarity=0.239  Sum_probs=74.2

Q ss_pred             ccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecCC
Q 045186           27 LVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLNN  105 (411)
Q Consensus        27 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~  105 (411)
                      -+.+++++ +.++.+|..+.  ++|++|+|++|...+..|..++++++|+.|+|++|.|+.+|.. +..+++|+.|+|++
T Consensus        14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            36788887 46788887663  7888888888554333466788888888888888888888765 46778888888877


Q ss_pred             CC--CChhHHHhhccccceeecCCCCccc
Q 045186          106 CK--NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus       106 ~~--~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      |.  .+....+..+++|+.|+|++|.+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            76  2333346667777777777776665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.13  E-value=3.4e-11  Score=124.65  Aligned_cols=147  Identities=18%  Similarity=0.235  Sum_probs=80.8

Q ss_pred             CCceeEEEEeCCC-CCcc---c------------ccccCCCCccEEEEecCCCCcccccccC-CCCCccEEEeeCCCCCc
Q 045186            1 MECLRELLLDGTD-IKEL---P------------VSIELLSGLVQLSLKGCKNLLSLPIAIS-SLKCLRNLKLSGCSKLK   63 (411)
Q Consensus         1 l~~L~~L~L~~~~-l~~l---p------------~si~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~   63 (411)
                      +++|++|+|+++. +..+   |            .....+++|++|+|++|......+..+. .+++|++|+|++|..++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            3567777777753 2211   1            1134566777777777643333333333 46677777777765544


Q ss_pred             c--cchhccCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCC-CChhH----HHhhccccceeecCCC-Cc
Q 045186           64 K--FPQIVASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCK-NLWTT----IIYIMAFARSFQFDGK-EF  130 (411)
Q Consensus        64 ~--lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~-~~~~~----~l~~l~~L~~L~Ls~n-~~  130 (411)
                      .  ++....++++|++|+|++|.++.     ++.....+++|+.|++++|. .....    .+..+++|+.|++++| .+
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            3  44545566777777777776542     22222355677777777665 22211    1344577777777766 33


Q ss_pred             cccccccccchhhhcCCCCCEec
Q 045186          131 ISCSFDVVFSVSISGLLNLKELE  153 (411)
Q Consensus       131 ~~~~~~~~lp~~l~~l~~L~~L~  153 (411)
                      ..      +|..+..+++|+.|+
T Consensus       225 ~~------l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          225 EK------LATLLQRAPQLEELG  241 (594)
T ss_dssp             HH------HHHHHHHCTTCSEEE
T ss_pred             HH------HHHHHhcCCcceEcc
Confidence            33      444455555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.12  E-value=1.8e-10  Score=100.18  Aligned_cols=104  Identities=20%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecC
Q 045186           26 GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLN  104 (411)
Q Consensus        26 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~  104 (411)
                      ..+.|++++ +.+..+|..+  .++|++|+|++|...+..|..++.+++|++|+|++|.|+.+|.. +..+++|+.|+|+
T Consensus        10 ~~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            356788887 4677788765  37888888888543333366678888888888888888877765 4677777777777


Q ss_pred             CCC--CChhHHHhhccccceeecCCCCccc
Q 045186          105 NCK--NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus       105 ~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      +|.  .+.+..+..+++|+.|+|++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            776  2333346667777777777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.10  E-value=8e-11  Score=121.92  Aligned_cols=80  Identities=14%  Similarity=0.145  Sum_probs=49.3

Q ss_pred             CCceeEEEEeCCCCCc-----ccccccCCCCccEEEEecCCCC----cccccccCCCCCccEEEeeCCCCCcccchhccC
Q 045186            1 MECLRELLLDGTDIKE-----LPVSIELLSGLVQLSLKGCKNL----LSLPIAISSLKCLRNLKLSGCSKLKKFPQIVAS   71 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~-----lp~si~~l~~L~~L~L~~c~~l----~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~   71 (411)
                      +++|++|+|++|.+..     ++..+.++++|+.|+|++|...    ..++..+.++++|+.|++++|. +..+|..++.
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhh
Confidence            4678888888876542     3333556777777777765432    2344445567777777777753 3445555555


Q ss_pred             CCCCcEEEcc
Q 045186           72 MEDLLELYLD   81 (411)
Q Consensus        72 l~~L~~L~L~   81 (411)
                      +++|+.|+++
T Consensus       242 ~~~L~~L~l~  251 (592)
T 3ogk_B          242 AANLEEFCGG  251 (592)
T ss_dssp             CTTCCEEEEC
T ss_pred             hhHHHhhccc
Confidence            6666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.08  E-value=1.2e-11  Score=128.18  Aligned_cols=171  Identities=14%  Similarity=0.138  Sum_probs=105.7

Q ss_pred             CCceeEEEEeCC-CCCc--ccccccCCCCccEEEEecCCCCc-----ccccccCCCCCccEEEeeCCC-CC--cccchhc
Q 045186            1 MECLRELLLDGT-DIKE--LPVSIELLSGLVQLSLKGCKNLL-----SLPIAISSLKCLRNLKLSGCS-KL--KKFPQIV   69 (411)
Q Consensus         1 l~~L~~L~L~~~-~l~~--lp~si~~l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~Ls~c~-~l--~~lp~~l   69 (411)
                      +++|++|+|++| .+..  ++..+.++++|++|+|++|. +.     .++.....+++|+.|++++|. .+  ..++..+
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            478999999988 5553  55555688999999998875 22     233334467788888888875 12  2233334


Q ss_pred             cCCCCCcEEEccCC-CCCccChhhhccCCCCEEecCCCCC--------------------------------ChhHHHhh
Q 045186           70 ASMEDLLELYLDGT-SITEVPSSIELLHGLELLNLNNCKN--------------------------------LWTTIIYI  116 (411)
Q Consensus        70 ~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~--------------------------------~~~~~l~~  116 (411)
                      ..+++|+.|++++| .+..+|..+..+++|+.|+++.+..                                ..+..+..
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~  287 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV  287 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence            55788888888887 4446777777778888887655431                                01112345


Q ss_pred             ccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCC---CCCCCceEEec
Q 045186          117 MAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQ---IPPNLWLVRAN  176 (411)
Q Consensus       117 l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~---l~~~L~~L~~~  176 (411)
                      +++|+.|+|++|.+..    ..++..+..+++|+.|++++|..-..++.   ..++|+.|++.
T Consensus       288 ~~~L~~L~L~~~~l~~----~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQS----YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             HTTCCEEECTTCCCCH----HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             hCCCCEEEccCCCCCH----HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence            6777777777776543    11223345677777777777622111211   13567777663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=3.2e-11  Score=118.52  Aligned_cols=156  Identities=13%  Similarity=0.061  Sum_probs=107.4

Q ss_pred             CceeEEEEeCCCCCccc-----cccc-CCCCccEEEEecCCCCcc-cccccCCCCCccEEEeeCCCCCcc----cchhc-
Q 045186            2 ECLRELLLDGTDIKELP-----VSIE-LLSGLVQLSLKGCKNLLS-LPIAISSLKCLRNLKLSGCSKLKK----FPQIV-   69 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-----~si~-~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~----lp~~l-   69 (411)
                      ++|++|+|++|.|....     ..+. +.++|+.|+|++|..... +......+++|+.|+|++|.....    +...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            57899999999987432     2223 237899999999753222 112122456899999999754322    22223 


Q ss_pred             cCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCCCChh------HHHhhccccceeecCCCCccccccccc
Q 045186           70 ASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCKNLWT------TIIYIMAFARSFQFDGKEFISCSFDVV  138 (411)
Q Consensus        70 ~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~------~~l~~l~~L~~L~Ls~n~~~~~~~~~~  138 (411)
                      ...++|++|+|++|.|+.     ++..+..+++|++|+|++|.....      ..+...++|+.|+|++|.++. .....
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~-~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD-TAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH-HHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH-HHHHH
Confidence            346789999999999863     455567789999999999983322      236677899999999998875 11122


Q ss_pred             cchhhhcCCCCCEecccCcc
Q 045186          139 FSVSISGLLNLKELELEDCK  158 (411)
Q Consensus       139 lp~~l~~l~~L~~L~L~~c~  158 (411)
                      ++..+...++|+.|+|++|.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHhCCCCCEEeccCCC
Confidence            44556677899999999885

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.02  E-value=6.9e-10  Score=107.35  Aligned_cols=100  Identities=19%  Similarity=0.161  Sum_probs=72.0

Q ss_pred             EEEEeCC-CCCcccccccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCccc-chhccCCCCCcEEEccC
Q 045186            6 ELLLDGT-DIKELPVSIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKF-PQIVASMEDLLELYLDG   82 (411)
Q Consensus         6 ~L~L~~~-~l~~lp~si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~   82 (411)
                      .++++++ +|+.+|. +..+++|+.|+|++++.+..+| ..+..|++|+.|+|++|. +..+ |..++++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence            4567776 7888888 8888888888888645666665 457788888888888854 4444 44677888888888888


Q ss_pred             CCCCccChhhhccCCCCEEecCCCC
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCK  107 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~  107 (411)
                      |.|+.+|..+.....|+.|+|.+|.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CccceeCHHHcccCCceEEEeeCCC
Confidence            8888777655443347777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=5e-10  Score=107.74  Aligned_cols=58  Identities=16%  Similarity=0.204  Sum_probs=43.3

Q ss_pred             CCceeEEEEeCCCCC--------------------cccc-cccC--------CCCccEEEEecCCCCccccc-ccCCCCC
Q 045186            1 MECLRELLLDGTDIK--------------------ELPV-SIEL--------LSGLVQLSLKGCKNLLSLPI-AISSLKC   50 (411)
Q Consensus         1 l~~L~~L~L~~~~l~--------------------~lp~-si~~--------l~~L~~L~L~~c~~l~~lp~-~i~~l~~   50 (411)
                      +++|+.|+|++|.|.                    .+|. .|.+        +++|+.|+|.+  .+..++. .+.++++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence            468999999998887                    3433 3667        88999999887  5666654 4778899


Q ss_pred             ccEEEeeCCC
Q 045186           51 LRNLKLSGCS   60 (411)
Q Consensus        51 L~~L~Ls~c~   60 (411)
                      |+.|+++++.
T Consensus       126 L~~l~l~~n~  135 (329)
T 3sb4_A          126 LKICQIRKKT  135 (329)
T ss_dssp             CCEEEBCCSS
T ss_pred             cceEEcCCCC
Confidence            9999998854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.91  E-value=1.9e-09  Score=104.17  Aligned_cols=102  Identities=16%  Similarity=0.159  Sum_probs=78.7

Q ss_pred             EEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCCCCccCh-hhhccCCCCEEecCCC
Q 045186           29 QLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNC  106 (411)
Q Consensus        29 ~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~  106 (411)
                      .+++++++.+..+|. +..+++|+.|+|++++.++.+| ..++++++|+.|+|++|.|+.+|. .++.+++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            457776447888998 8889999999998756677776 568889999999999999996655 5788889999998888


Q ss_pred             C--CChhHHHhhccccceeecCCCCccc
Q 045186          107 K--NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus       107 ~--~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      .  .+.+..+..++ |+.|+|.+|.+..
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            7  33333445454 8888888887764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=5.6e-09  Score=101.99  Aligned_cols=56  Identities=27%  Similarity=0.298  Sum_probs=25.6

Q ss_pred             CCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCC-ccChhhh--ccCCCCEEecC
Q 045186           46 SSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSIT-EVPSSIE--LLHGLELLNLN  104 (411)
Q Consensus        46 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~--~l~~L~~L~L~  104 (411)
                      ..+++|+.|+|++|..+ .++. +. +++|++|+|..+.+. +....+.  .+++|+.|+|+
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            34555566665554222 2222 22 455555555555544 1112222  45555555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.78  E-value=3.5e-09  Score=103.93  Aligned_cols=129  Identities=17%  Similarity=0.094  Sum_probs=98.0

Q ss_pred             CceeEEEEeCCCCCc--ccccccCCCCccEEEEecCCCCcc-----ccccc-CCCCCccEEEeeCCCCCc-----ccchh
Q 045186            2 ECLRELLLDGTDIKE--LPVSIELLSGLVQLSLKGCKNLLS-----LPIAI-SSLKCLRNLKLSGCSKLK-----KFPQI   68 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~--lp~si~~l~~L~~L~L~~c~~l~~-----lp~~i-~~l~~L~~L~Ls~c~~l~-----~lp~~   68 (411)
                      ++|++|+|++|.|..  +..-...+++|+.|+|++|. ++.     +...+ ...++|++|+|++|. ++     .++..
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence            589999999999873  22223456789999999974 432     22222 346789999999975 43     35566


Q ss_pred             ccCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCCCChh------HHHhhccccceeecCCCCccc
Q 045186           69 VASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCKNLWT------TIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        69 l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~------~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      +..+++|++|+|++|.|+.     ++..+...++|+.|+|++|.....      ..+...++|++|+|++|.+..
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            7788999999999999873     355677889999999999984432      225677999999999999876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=1.4e-08  Score=97.52  Aligned_cols=167  Identities=13%  Similarity=0.101  Sum_probs=116.5

Q ss_pred             CCceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeC-----------------CCC
Q 045186            1 MECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSG-----------------CSK   61 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~-----------------c~~   61 (411)
                      +++|+.|+|.. .++.|+. +|.++++|+.|+|.++. +..++ ..+..+.++..+.+..                 |..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            47899999998 8888875 49999999999999854 43443 3344444454444322                 222


Q ss_pred             Cc---------ccchh----------------------------ccCCCCCcEEEccCCCCCccChh-hhccCCCCEEec
Q 045186           62 LK---------KFPQI----------------------------VASMEDLLELYLDGTSITEVPSS-IELLHGLELLNL  103 (411)
Q Consensus        62 l~---------~lp~~----------------------------l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L  103 (411)
                      ++         .++..                            ...+++|+.|+|.+|.++.+|.. +..+.+|+.|++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence            21         11110                            01278999999999999998875 788999999999


Q ss_pred             CCCCC-ChhHHHhhccccc-eeecCCCCccccccccccc-hhhhcCCCCCEecccCcccccccCCCCCCCceEEecCCCC
Q 045186          104 NNCKN-LWTTIIYIMAFAR-SFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSS  180 (411)
Q Consensus       104 ~~~~~-~~~~~l~~l~~L~-~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~  180 (411)
                      .+|-. +....+..+++|+ .|++.+ +++.      |+ ..+..|++|+.|+++++ .++.++.-.       ..+|++
T Consensus       258 ~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~------I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a-------F~~~~~  322 (329)
T 3sb4_A          258 PHNLKTIGQRVFSNCGRLAGTLELPA-SVTA------IEFGAFMGCDNLRYVLATGD-KITTLGDEL-------FGNGVP  322 (329)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEEEECT-TCCE------ECTTTTTTCTTEEEEEECSS-CCCEECTTT-------TCTTCC
T ss_pred             CcccceehHHHhhCChhccEEEEEcc-cceE------EchhhhhCCccCCEEEeCCC-ccCccchhh-------hcCCcc
Confidence            98743 3344589999999 999998 6777      76 67889999999999774 466665421       235666


Q ss_pred             CCcc
Q 045186          181 LVTL  184 (411)
Q Consensus       181 L~~l  184 (411)
                      |+.+
T Consensus       323 L~~l  326 (329)
T 3sb4_A          323 SKLI  326 (329)
T ss_dssp             CCEE
T ss_pred             hhhh
Confidence            6654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.58  E-value=4.1e-07  Score=90.04  Aligned_cols=140  Identities=13%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             ceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            3 CLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +|+.+.|..+ ++.|+.. |.++ +|+.+.|..  .+..++ ..+.++.+|+.+++++ +.+..+|...-...+|+.+.|
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEEC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEe
Confidence            4566666544 5555433 5553 577777764  455554 3455677777777766 456666654333566777776


Q ss_pred             cCCCCCccCh-hhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccC
Q 045186           81 DGTSITEVPS-SIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELED  156 (411)
Q Consensus        81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~  156 (411)
                      ..+ ++.++. .+..+++|+.+.+.++-.. ....+.. .+|+.+.|. ++++.      ++ ..+..|++|+.+.+.+
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~~------I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-NGVTN------IASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-TTCCE------ECTTTTTTCTTCCEEEEES
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-CCccE------EChhHhhCCCCCCEEEeCC
Confidence            633 555543 3556666777766654321 1222333 456666653 33444      43 3455566666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.46  E-value=3.4e-07  Score=89.32  Aligned_cols=154  Identities=13%  Similarity=0.170  Sum_probs=106.0

Q ss_pred             CCceeEEEEeCCCCC----------cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhcc
Q 045186            1 MECLRELLLDGTDIK----------ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVA   70 (411)
Q Consensus         1 l~~L~~L~L~~~~l~----------~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~   70 (411)
                      +++|+.|.+.+....          .+...+..+++|+.|+|++|..+ .++. + .+++|+.|+|..|.........+.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            478999999764321          24455678899999999997433 4554 4 488999999998764333333333


Q ss_pred             --CCCCCcEEEccCC--------CCCccChhh--hccCCCCEEecCCCCCChh--HHH---hhccccceeecCCCCcccc
Q 045186           71 --SMEDLLELYLDGT--------SITEVPSSI--ELLHGLELLNLNNCKNLWT--TII---YIMAFARSFQFDGKEFISC  133 (411)
Q Consensus        71 --~l~~L~~L~L~~~--------~i~~lp~~i--~~l~~L~~L~L~~~~~~~~--~~l---~~l~~L~~L~Ls~n~~~~~  133 (411)
                        .+++|+.|+|+.+        .+..+...+  ..+++|+.|+|.+|.....  ..+   ..+++|+.|+|+.|.+.. 
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d-  293 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD-  293 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH-
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh-
Confidence              6899999998531        122222222  3579999999999874422  122   357899999999998765 


Q ss_pred             ccccccchhhhcCCCCCEecccCcc
Q 045186          134 SFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus       134 ~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      .....++..+..+++|+.|+|++|.
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHHHHhhcccCCcceEEECCCCc
Confidence            1122345566788999999999885

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.44  E-value=1.4e-06  Score=86.06  Aligned_cols=155  Identities=14%  Similarity=0.193  Sum_probs=110.2

Q ss_pred             ceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEc
Q 045186            3 CLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYL   80 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L   80 (411)
                      +|+.+.|.. .++.++ .+|.++++|+.++|.+ +.+..+|.......+|+.+.|..  .+..++ ..+.++.+|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence            477788775 677775 4588999999999987 47888887666678999999985  366666 45678889999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccCcc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCK  158 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~  158 (411)
                      ..+ ++.++.....-.+|+.+.+.++-. +....+..+++|+.+.+.+|.+..+ ....++ ..+..|++|+.+.|.+  
T Consensus       234 ~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~-~~~~I~~~aF~~c~~L~~l~l~~--  309 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDD-PEAMIHPYCLEGCPKLARFEIPE--  309 (401)
T ss_dssp             CTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCC-TTCEECTTTTTTCTTCCEECCCT--
T ss_pred             CCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCC-cccEECHHHhhCCccCCeEEeCC--
Confidence            864 666665433337899998865542 3345588889999999988766510 000144 5678888999988874  


Q ss_pred             cccccCC
Q 045186          159 RLQSLPQ  165 (411)
Q Consensus       159 ~l~~lp~  165 (411)
                      .++.++.
T Consensus       310 ~i~~I~~  316 (401)
T 4fdw_A          310 SIRILGQ  316 (401)
T ss_dssp             TCCEECT
T ss_pred             ceEEEhh
Confidence            3555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.35  E-value=5.4e-07  Score=78.43  Aligned_cols=84  Identities=14%  Similarity=0.111  Sum_probs=49.9

Q ss_pred             CCcEEEccCCCCC-ccChhhhccCCCCEEecCCCCCChhHH---Hhhc----cccceeecCCCC-ccccccccccchhhh
Q 045186           74 DLLELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNLWTTI---IYIM----AFARSFQFDGKE-FISCSFDVVFSVSIS  144 (411)
Q Consensus        74 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~---l~~l----~~L~~L~Ls~n~-~~~~~~~~~lp~~l~  144 (411)
                      +|+.||+++|.|+ .--..+..+++|+.|+|++|..+.+..   +..+    ++|++|+|++|. ++.    ..+ ..+.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----~Gl-~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD----KGI-IALH  136 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH----HHH-HHGG
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH----HHH-HHHh
Confidence            4566666666655 222345667777777777777666554   3322    357777777764 433    112 2355


Q ss_pred             cCCCCCEecccCcccccc
Q 045186          145 GLLNLKELELEDCKRLQS  162 (411)
Q Consensus       145 ~l~~L~~L~L~~c~~l~~  162 (411)
                      .+++|+.|+|++|+.+++
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            677777777777776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=6e-07  Score=78.95  Aligned_cols=83  Identities=12%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             ccCCCCccEEEEecCCCCcc-----cccccCCCCCccEEEeeCCCCCc----ccchhccCCCCCcEEEccCCCCCc----
Q 045186           21 IELLSGLVQLSLKGCKNLLS-----LPIAISSLKCLRNLKLSGCSKLK----KFPQIVASMEDLLELYLDGTSITE----   87 (411)
Q Consensus        21 i~~l~~L~~L~L~~c~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~----   87 (411)
                      +...++|++|+|++|..++.     +...+...++|++|+|++|..-.    .+...+...++|++|+|++|.|..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            34455555555555423321     23334444555555555543211    122333334455555555555542    


Q ss_pred             -cChhhhccCCCCEEec
Q 045186           88 -VPSSIELLHGLELLNL  103 (411)
Q Consensus        88 -lp~~i~~l~~L~~L~L  103 (411)
                       +...+...++|+.|+|
T Consensus       112 ~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          112 ALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHhCCCceEEEe
Confidence             2333444445555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=7.7e-07  Score=78.22  Aligned_cols=117  Identities=8%  Similarity=0.053  Sum_probs=87.7

Q ss_pred             cccccCCCCCccEEEeeCCCCCc-----ccchhccCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCCCCh
Q 045186           41 LPIAISSLKCLRNLKLSGCSKLK-----KFPQIVASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCKNLW  110 (411)
Q Consensus        41 lp~~i~~l~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~  110 (411)
                      +...+...++|++|+|++|..++     .+...+...++|++|+|++|.|..     +...+...++|+.|+|++|....
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            34456678999999999973453     355667778999999999999973     44456677899999999998444


Q ss_pred             h------HHHhhccccceeec--CCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186          111 T------TIIYIMAFARSFQF--DGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus       111 ~------~~l~~l~~L~~L~L--s~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      .      ..+...++|++|+|  ++|.+.. .....+...+...++|+.|+|++|.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~-~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGN-NVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCH-HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCH-HHHHHHHHHHHhCCCcCEEeccCCC
Confidence            3      23667789999999  8888765 1222244566777999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=1.8e-06  Score=75.14  Aligned_cols=83  Identities=12%  Similarity=0.224  Sum_probs=41.4

Q ss_pred             CccEEEEecCCCCcc-cccccCCCCCccEEEeeCCCCCccc-chhccCC----CCCcEEEccCC-CCC-ccChhhhccCC
Q 045186           26 GLVQLSLKGCKNLLS-LPIAISSLKCLRNLKLSGCSKLKKF-PQIVASM----EDLLELYLDGT-SIT-EVPSSIELLHG   97 (411)
Q Consensus        26 ~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l----~~L~~L~L~~~-~i~-~lp~~i~~l~~   97 (411)
                      +|+.|||++|. ++. --..+..+++|+.|+|++|..++.- -..+..+    ++|+.|+|++| .|+ .--..+.++++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            56666666664 332 1122456666666666666655421 1223332    24566666655 255 11223445556


Q ss_pred             CCEEecCCCCCC
Q 045186           98 LELLNLNNCKNL  109 (411)
Q Consensus        98 L~~L~L~~~~~~  109 (411)
                      |+.|+|++|..+
T Consensus       141 L~~L~L~~c~~I  152 (176)
T 3e4g_A          141 LKYLFLSDLPGV  152 (176)
T ss_dssp             CCEEEEESCTTC
T ss_pred             CCEEECCCCCCC
Confidence            666666665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.78  E-value=4.2e-05  Score=71.06  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=37.1

Q ss_pred             cCCCCCcEEEccCCCCCccC---hhhhccCCCCEEecCCCCCChhHHHhhcc--ccceeecCCCCccc
Q 045186           70 ASMEDLLELYLDGTSITEVP---SSIELLHGLELLNLNNCKNLWTTIIYIMA--FARSFQFDGKEFIS  132 (411)
Q Consensus        70 ~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~~~~~~l~~l~--~L~~L~Ls~n~~~~  132 (411)
                      .++++|+.|+|++|.|+.++   ..+..+++|+.|+|++|.......+..+.  +|++|+|++|.+..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence            34667777777777666433   44556667777777666633323333333  66666666666543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.73  E-value=5.3e-05  Score=70.39  Aligned_cols=77  Identities=19%  Similarity=0.180  Sum_probs=56.4

Q ss_pred             CCCCccEEEeeCCCCCc--ccchhccCCCCCcEEEccCCCCCccChhhhccC--CCCEEecCCCCCCh---------hHH
Q 045186           47 SLKCLRNLKLSGCSKLK--KFPQIVASMEDLLELYLDGTSITEVPSSIELLH--GLELLNLNNCKNLW---------TTI  113 (411)
Q Consensus        47 ~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~~~---------~~~  113 (411)
                      ++++|+.|+|++|....  .+|..++.+++|+.|+|++|.|+.+ ..+..+.  +|+.|+|++|.-..         ...
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            57899999999964333  4456667899999999999999876 3455555  89999999998321         123


Q ss_pred             Hhhccccceee
Q 045186          114 IYIMAFARSFQ  124 (411)
Q Consensus       114 l~~l~~L~~L~  124 (411)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            66777777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.25  E-value=0.001  Score=65.04  Aligned_cols=55  Identities=16%  Similarity=0.159  Sum_probs=33.1

Q ss_pred             CCceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeC
Q 045186            1 MECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSG   58 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~   58 (411)
                      +++|+.+.+..+ +..++. .|.++.+|+.+.+..+  +..++ ..+.++..|+.+.+..
T Consensus       161 c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          161 CESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred             cCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCC
Confidence            357888888654 455543 4778888888888652  44433 2344555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.09  E-value=0.0026  Score=62.08  Aligned_cols=60  Identities=20%  Similarity=0.129  Sum_probs=39.9

Q ss_pred             ccccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccC
Q 045186           19 VSIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDG   82 (411)
Q Consensus        19 ~si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~   82 (411)
                      .+|.++++|+.+.+.+  .+..++ ..+.++.+|+.+++..+  ++.++. .+.++..|+.+.+..
T Consensus       156 ~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          156 EAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred             hhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCC
Confidence            3488899999999975  344554 34667889999998763  444442 345566666665544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.69  E-value=0.0029  Score=55.79  Aligned_cols=60  Identities=15%  Similarity=0.225  Sum_probs=29.0

Q ss_pred             CCCccEEEeeCCCCCc-----ccchhccCCCCCcEEEccCCCCC-----ccChhhhccCCCCEEecCCCC
Q 045186           48 LKCLRNLKLSGCSKLK-----KFPQIVASMEDLLELYLDGTSIT-----EVPSSIELLHGLELLNLNNCK  107 (411)
Q Consensus        48 l~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~  107 (411)
                      -+.|+.|+|++++.++     .+-+.+..-+.|+.|+|++|.|.     .+...+..-+.|+.|+|++|.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            3455556665532332     23334444455666666666554     122233334555555555555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.69  E-value=0.0081  Score=58.01  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=32.6

Q ss_pred             cCCCCCcEEEccCCCCCccCh-hhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccc-hhhhcC
Q 045186           70 ASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGL  146 (411)
Q Consensus        70 ~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l  146 (411)
                      .++..|+.+.+..+ ++.+.. .+..+.+|+.+.+..+-.. ....+..+++|+.+.+.++.++.      |+ ..+.+|
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~------I~~~aF~~c  309 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIET------LEPRVFMDC  309 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCE------ECTTTTTTC
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccce------ehhhhhcCC
Confidence            33444444444332 332222 2334444555444333211 11224444555555555444444      43 234444


Q ss_pred             CCCCEecc
Q 045186          147 LNLKELEL  154 (411)
Q Consensus       147 ~~L~~L~L  154 (411)
                      .+|+.+.|
T Consensus       310 ~~L~~i~l  317 (379)
T 4h09_A          310 VKLSSVTL  317 (379)
T ss_dssp             TTCCEEEC
T ss_pred             CCCCEEEc
Confidence            55555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.56  E-value=0.0031  Score=55.58  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=75.4

Q ss_pred             ccCCCCccEEEEecCCCCcc-----cccccCCCCCccEEEeeCCCCC----cccchhccCCCCCcEEEccCCCCC-----
Q 045186           21 IELLSGLVQLSLKGCKNLLS-----LPIAISSLKCLRNLKLSGCSKL----KKFPQIVASMEDLLELYLDGTSIT-----   86 (411)
Q Consensus        21 i~~l~~L~~L~L~~c~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~L~~~~i~-----   86 (411)
                      +.+-+.|+.|+|++++.++.     +-..+..-+.|+.|+|++|..-    ..+.+.+..-+.|+.|+|++|.|.     
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            45567899999987645553     4445666789999999996543    234455666688999999999997     


Q ss_pred             ccChhhhccCCCCEEecCCCCC--Chh-------HHHhhccccceeecCCCCc
Q 045186           87 EVPSSIELLHGLELLNLNNCKN--LWT-------TIIYIMAFARSFQFDGKEF  130 (411)
Q Consensus        87 ~lp~~i~~l~~L~~L~L~~~~~--~~~-------~~l~~l~~L~~L~Ls~n~~  130 (411)
                      .+-..+..-+.|+.|+|++|..  .-.       ..+..-+.|+.|+++.|.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            2333455557799999987632  111       2255567788888876643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.28  E-value=0.014  Score=56.89  Aligned_cols=105  Identities=13%  Similarity=0.170  Sum_probs=69.7

Q ss_pred             ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCCCCccCh-hhhccCCCCEEecCCCC-CChhHHHhhcccc
Q 045186           44 AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNCK-NLWTTIIYIMAFA  120 (411)
Q Consensus        44 ~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L  120 (411)
                      .+..+.+|+.+.+.. + +..+. ..+.++.+|+.+.+. +.++.++. .+..+.+|+.+.|..+- .+....+..+++|
T Consensus       260 aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred             eeeecccccEEeccc-c-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence            355677788877765 2 23333 345667788888875 45666654 36677888888886653 2333457788888


Q ss_pred             ceeecCCCCccccccccccc-hhhhcCCCCCEecccCcc
Q 045186          121 RSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCK  158 (411)
Q Consensus       121 ~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~  158 (411)
                      +.+.|..+ ++.      |. ..+.+|++|+.+++.++.
T Consensus       337 ~~i~ip~s-v~~------I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          337 ERIAIPSS-VTK------IPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CEEEECTT-CCB------CCGGGGTTCTTCCEEEESSCH
T ss_pred             CEEEECcc-cCE------EhHhHhhCCCCCCEEEECCce
Confidence            88888654 566      65 467788888888887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.25  E-value=0.027  Score=54.21  Aligned_cols=125  Identities=11%  Similarity=0.134  Sum_probs=77.0

Q ss_pred             cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCCCCccCh-hhhccC
Q 045186           20 SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTSITEVPS-SIELLH   96 (411)
Q Consensus        20 si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~   96 (411)
                      .+..+.+|+.+.+..  .+..++ ..+..+..|+.+.+..+  +..+. ..+.++.+|+.+.+.. .++.++. .+..+.
T Consensus       212 ~f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~  286 (379)
T 4h09_A          212 GFSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCT
T ss_pred             ccccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceecccccccccc
Confidence            355667777777654  244433 33456677777777652  45444 3455667777777754 3554443 356677


Q ss_pred             CCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccC
Q 045186           97 GLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELED  156 (411)
Q Consensus        97 ~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~  156 (411)
                      +|+.+.+.++.  .+....+..+.+|+.+.|..+ ++.      |. ..+.+|++|+.+.+..
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~------I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT------IQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE------ECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE------EHHHHhhCCCCCCEEEECC
Confidence            78877776653  233445777778888877653 555      55 3567778888877753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.11  E-value=0.014  Score=56.91  Aligned_cols=124  Identities=14%  Similarity=0.222  Sum_probs=86.3

Q ss_pred             cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCCCCCccCh-hhhccC
Q 045186           20 SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGTSITEVPS-SIELLH   96 (411)
Q Consensus        20 si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~   96 (411)
                      +|.++.+|+.+.+..  .+..+. ..+.++.+|+.+.+..  .+..+++ .+.++.+|+.+.|..+ ++.+.. .+..+.
T Consensus       260 aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             eeeecccccEEeccc--ccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            477889999999875  233443 4466789999999964  5677764 5678899999999754 666654 577899


Q ss_pred             CCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186           97 GLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED  156 (411)
Q Consensus        97 ~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~  156 (411)
                      +|+.+.+..+- .+....+.++++|+.+++.++...       + ..+..+..|+.+.+..
T Consensus       335 ~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~-------~-~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          335 QLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQ-------W-NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             TCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHH-------H-HTCBCCCCC-------
T ss_pred             CCCEEEECcccCEEhHhHhhCCCCCCEEEECCceee-------h-hhhhccCCCCEEEeCC
Confidence            99999997654 344566999999999999987432       2 3456677888877754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.42  E-value=0.027  Score=45.91  Aligned_cols=52  Identities=23%  Similarity=0.343  Sum_probs=33.7

Q ss_pred             EEEeeCCCCCc--ccchhccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecCCCC
Q 045186           53 NLKLSGCSKLK--KFPQIVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLNNCK  107 (411)
Q Consensus        53 ~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~  107 (411)
                      .++.++ ..++  .+|..+  -.+|+.|+|++|.|+.+|.. +..+++|+.|+|.+|.
T Consensus        12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCC-CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            556665 4455  666543  24677888888888877754 4556677777766665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.69  E-value=0.039  Score=44.94  Aligned_cols=53  Identities=11%  Similarity=0.135  Sum_probs=30.0

Q ss_pred             cEEEccCCCCC--ccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCc
Q 045186           76 LELYLDGTSIT--EVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEF  130 (411)
Q Consensus        76 ~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~  130 (411)
                      ..++.++++++  .+|..+.  ++|+.|+|++|.  .+....+..+++|+.|+|++|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            36788888888  8886432  356666666555  22233344455555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	411
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 1   MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
              L EL +    + ELP    L   L +L      +L  +P      + L+ L +    
Sbjct: 283 PPSLEELNVSNNKLIELP---ALPPRLERLIASFN-HLAEVP---ELPQNLKQLHVEYN- 334

Query: 61  KLKKFPQIVASMEDL 75
            L++FP I  S+EDL
Sbjct: 335 PLREFPDIPESVEDL 349

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	411
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.49
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.04
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.73
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.99
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.96
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.47
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.07

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=2.5e-18  Score=162.56  Aligned_cols=182  Identities=19%  Similarity=0.199  Sum_probs=131.4

Q ss_pred             ceeEEEEeCCCCC---cccccccCCCCccEEEEecCCCC-cccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            3 CLRELLLDGTDIK---ELPVSIELLSGLVQLSLKGCKNL-LSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         3 ~L~~L~L~~~~l~---~lp~si~~l~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      +++.|+|+++.+.   .+|++++++++|++|+|++|+.+ +.+|..|++|++|++|+|++|...+..|..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            5889999998887   57889999999999999975554 4899999999999999999976555555556667777777


Q ss_pred             EccCCCCC-ccChhhhccCCCCEEecCCCCCC--hh--------------------------------------------
Q 045186           79 YLDGTSIT-EVPSSIELLHGLELLNLNNCKNL--WT--------------------------------------------  111 (411)
Q Consensus        79 ~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~--~~--------------------------------------------  111 (411)
                      +++.|.+. .+|..++.++.|+.+++++|...  .+                                            
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77776655 56666777777777776666411  11                                            


Q ss_pred             ----HHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCC---CCCCceEEecCCCCCCcc
Q 045186          112 ----TIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTL  184 (411)
Q Consensus       112 ----~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l  184 (411)
                          ..+..+++|+.|++++|.+..      .+..+..+++|+.|+|++|+....+|..   .++|++|+++++.--..+
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~------~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAF------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECC------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             ccccccccccccccccccccccccc------cccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence                123455667777777777766      5556788889999999988766677753   267889998886432356


Q ss_pred             cCCcCc
Q 045186          185 SGALNL  190 (411)
Q Consensus       185 ~~~~nl  190 (411)
                      |.+.++
T Consensus       285 P~~~~L  290 (313)
T d1ogqa_         285 PQGGNL  290 (313)
T ss_dssp             CCSTTG
T ss_pred             CCcccC
Confidence            654444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6.2e-17  Score=144.43  Aligned_cols=161  Identities=22%  Similarity=0.333  Sum_probs=136.5

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      .+|++|++++|.|+.++. +..+++|++|+|++| .++.++. +..+++|++|++++| .++.+| .+..+++|+.|+++
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCCCchh-HhhCCCCCEEeCCCc-cccCccc-cccCccccccccccc-cccccc-cccccccccccccc
Confidence            468899999999998875 899999999999996 6777774 788999999999995 577787 47889999999999


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ  161 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~  161 (411)
                      +|.+..++ .+.++++|+.+++++|.......+..+++|+.+++++|++++      ++ .+..+++|+.|+|++| .++
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~------i~-~l~~l~~L~~L~Ls~N-~i~  191 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------IV-PLAGLTKLQNLYLSKN-HIS  191 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------CG-GGTTCTTCCEEECCSS-CCC
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccccccc------cc-cccCCCCCCEEECCCC-CCC
Confidence            99998775 588899999999999986555668889999999999999988      87 4889999999999997 477


Q ss_pred             ccCCCC--CCCceEEec
Q 045186          162 SLPQIP--PNLWLVRAN  176 (411)
Q Consensus       162 ~lp~l~--~~L~~L~~~  176 (411)
                      ++|.+.  ++|+.|+++
T Consensus       192 ~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         192 DLRALAGLKNLDVLELF  208 (210)
T ss_dssp             BCGGGTTCTTCSEEEEE
T ss_pred             CChhhcCCCCCCEEEcc
Confidence            777554  577777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.5e-17  Score=149.49  Aligned_cols=152  Identities=21%  Similarity=0.270  Sum_probs=70.7

Q ss_pred             ceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            3 CLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      +|++|+|++|.|+.+|. +|.++++|++|+|++| .++.+|. +..+++|++|+|++| .+...+..+..+++|+.|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccccc-ccccccccccccccccccccc
Confidence            34555555555554442 2445555555555543 3444442 334455555555552 334444444445555555555


Q ss_pred             CCCCCccCh-hhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccCc
Q 045186           82 GTSITEVPS-SIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDC  157 (411)
Q Consensus        82 ~~~i~~lp~-~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c  157 (411)
                      ++.+..++. .+..+.+|+.|++++|.  ...+..+..+++|+.|++++|+++.      +| ..+..+++|++|+|++|
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~------~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE------LPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC------CCTTTTTTCTTCCEEECCSS
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc------cCccccccccccceeecccC
Confidence            554443322 23344455555555444  2222334445555555555555554      43 22444555555555554


Q ss_pred             ccccccC
Q 045186          158 KRLQSLP  164 (411)
Q Consensus       158 ~~l~~lp  164 (411)
                      . ++.+|
T Consensus       183 ~-L~~lp  188 (266)
T d1p9ag_         183 S-LYTIP  188 (266)
T ss_dssp             C-CCCCC
T ss_pred             C-CcccC
Confidence            3 44444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.6e-16  Score=140.44  Aligned_cols=150  Identities=17%  Similarity=0.295  Sum_probs=110.6

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++|++|++++++|+.++. ++.+++|++|++++| .+..++. +.++++|++|++++| .+..++. ++++++|+.|+++
T Consensus        40 ~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l~  114 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF  114 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEECC
T ss_pred             cCCCEEECCCCCCCCccc-cccCCCcCcCccccc-cccCccc-ccCCccccccccccc-ccccccc-ccccccccccccc
Confidence            567888888888887754 778888888888875 5666654 778888888888875 3455553 6778888888888


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ  161 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~  161 (411)
                      ++.+..++ .+..+++|+.|++++|.......+..+++|+.|++.+|.+++      ++ .++++++|+.|++++|+ ++
T Consensus       115 ~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~------l~-~l~~l~~L~~L~ls~N~-i~  185 (199)
T d2omxa2         115 NNQITDID-PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD------LK-PLANLTTLERLDISSNK-VS  185 (199)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC------CG-GGTTCTTCCEEECCSSC-CC
T ss_pred             cccccccc-ccchhhhhHHhhhhhhhhcccccccccccccccccccccccC------Cc-cccCCCCCCEEECCCCC-CC
Confidence            88777654 467778888888888774444457778888888888888877      66 47778888888888874 66


Q ss_pred             ccCC
Q 045186          162 SLPQ  165 (411)
Q Consensus       162 ~lp~  165 (411)
                      +++.
T Consensus       186 ~i~~  189 (199)
T d2omxa2         186 DISV  189 (199)
T ss_dssp             CCGG
T ss_pred             CCcc
Confidence            6553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-16  Score=146.25  Aligned_cols=150  Identities=23%  Similarity=0.222  Sum_probs=132.4

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|+|++|.|+.+|. ++.+++|++|+|++| .+...+..+..+++|+.|++++|......+..+..+.+++.|++
T Consensus        54 l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l  131 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (266)
T ss_dssp             CTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccc-ccccccccccccccc-cccccccccccccccccccccccccceeeccccccccccccccc
Confidence            5789999999999999886 789999999999996 67777888889999999999997655555566778999999999


Q ss_pred             cCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186           81 DGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC  157 (411)
Q Consensus        81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c  157 (411)
                      ++|.++.+|.. +..+++|+.|++++|.  ......+..+++|++|+|++|.++.      +|..+..+++|+.|+|++|
T Consensus       132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~------lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT------IPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCCCSEEECCSC
T ss_pred             cccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc------cChhHCCCCCCCEEEecCC
Confidence            99999988765 5678999999999998  4445568999999999999999999      9999999999999999998


Q ss_pred             c
Q 045186          158 K  158 (411)
Q Consensus       158 ~  158 (411)
                      +
T Consensus       206 p  206 (266)
T d1p9ag_         206 P  206 (266)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=3.5e-15  Score=139.99  Aligned_cols=174  Identities=21%  Similarity=0.204  Sum_probs=132.0

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh------------
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI------------   68 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~------------   68 (411)
                      ++|++|+|++|.|+++|+ +|.++++|++|++++|......|..+..+++|++|++++|. ++.+|..            
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccchhhhhhhhhccc
Confidence            578999999999999986 58999999999999976555456778899999999999863 3333321            


Q ss_pred             ------------------------------------ccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCC--h
Q 045186           69 ------------------------------------VASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNL--W  110 (411)
Q Consensus        69 ------------------------------------l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~--~  110 (411)
                                                          +..+++|+.+++++|.+..+|..+  +++|+.|++++|...  .
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEEC
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCC
Confidence                                                223456666667666666665443  567777777776632  2


Q ss_pred             hHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccCcccccccCCC---CCCCceEEecCCCCCCcccC
Q 045186          111 TTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       111 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~  186 (411)
                      ...+..++.++.|++++|.+.+      ++ ..+..+++|+.|+|++| .++.+|..   .++|++|+++++ +|++++.
T Consensus       188 ~~~~~~~~~l~~L~~s~n~l~~------~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~  259 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFNSISA------VDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGS  259 (305)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCE------ECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred             hhHhhccccccccccccccccc------cccccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccCh
Confidence            3458888999999999999988      64 67788999999999998 57777752   278999999986 5777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=3.8e-15  Score=133.95  Aligned_cols=173  Identities=21%  Similarity=0.329  Sum_probs=135.4

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      .+|+.|++.+|+|+.++ .+.++++|++|++++| .+..++. +..+++|++|++++| .++.++ .+..+++|+.|+++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECT
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCc-eeecccc-ccccccccccccccc-cccccc-cccccccccccccc
Confidence            57899999999999985 5999999999999996 5666654 789999999999986 456665 47789999999999


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ  161 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~  161 (411)
                      ++.+..++ .+...+.+..+.++++.......+..+++|+.|++++|.+..      ++ .+.++++|+.|++++| .++
T Consensus       116 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~-~l~~l~~L~~L~Ls~n-~l~  186 (227)
T d1h6ua2         116 STQITDVT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD------LT-PLANLSKLTTLKADDN-KIS  186 (227)
T ss_dssp             TSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC------CG-GGTTCTTCCEEECCSS-CCC
T ss_pred             cccccccc-hhccccchhhhhchhhhhchhhhhcccccccccccccccccc------ch-hhcccccceecccCCC-ccC
Confidence            98877654 356678888888888775555557788888888888888776      55 4778888888888887 467


Q ss_pred             ccCCCC--CCCceEEecCCCCCCcccCCcC
Q 045186          162 SLPQIP--PNLWLVRANGCSSLVTLSGALN  189 (411)
Q Consensus       162 ~lp~l~--~~L~~L~~~~c~~L~~l~~~~n  189 (411)
                      +++.+.  ++|++|++++| .++.++.+.+
T Consensus       187 ~l~~l~~l~~L~~L~Ls~N-~lt~i~~l~~  215 (227)
T d1h6ua2         187 DISPLASLPNLIEVHLKNN-QISDVSPLAN  215 (227)
T ss_dssp             CCGGGGGCTTCCEEECTTS-CCCBCGGGTT
T ss_pred             CChhhcCCCCCCEEECcCC-cCCCCccccc
Confidence            776543  68888888887 5776664333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.7e-15  Score=133.56  Aligned_cols=143  Identities=21%  Similarity=0.304  Sum_probs=124.3

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      |++|++|+|++|.|+.+++ ++++++|++|++++| .++.+|. +..+++|+.|++++|. +..++ .+..+++|+.+++
T Consensus        67 l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~l~~l~~  141 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYL  141 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEEC
T ss_pred             CCCCCEEeCCCccccCccc-cccCccccccccccc-ccccccc-cccccccccccccccc-ccccc-ccccccccccccc
Confidence            5799999999999999885 899999999999996 6788874 8899999999999965 45554 5778999999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED  156 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~  156 (411)
                      ++|.++..+ .+..+++|+.+++++|.......+..+++|+.|+|++|.++.      +| .+..+++|+.|+|++
T Consensus       142 ~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~------l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         142 GNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD------LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB------CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccc-cccccccccccccccccccccccccCCCCCCEEECCCCCCCC------Ch-hhcCCCCCCEEEccC
Confidence            999998765 578899999999999985444458899999999999999998      88 689999999999975

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=7.2e-15  Score=132.09  Aligned_cols=162  Identities=23%  Similarity=0.366  Sum_probs=134.4

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      |++|++|++++|.|+.+++ +..+++|++|++++| .++.++. +.++++|+.|++++|.... ++ .+...+.++.+.+
T Consensus        62 l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~~-l~~l~~L~~l~l~~~~~~~-~~-~~~~~~~~~~l~~  136 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSA-IAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYL  136 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG-GTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEEC
T ss_pred             CCCCcEeecCCceeecccc-ccccccccccccccc-ccccccc-ccccccccccccccccccc-cc-hhccccchhhhhc
Confidence            6899999999999998876 899999999999985 5677764 7899999999999975433 32 3556789999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL  160 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l  160 (411)
                      +++.+...+ .+..+++|+.|++++|.......++.+++|+.|+|++|.+++      ++ .+..+++|++|+|++| .+
T Consensus       137 ~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~------l~-~l~~l~~L~~L~Ls~N-~l  207 (227)
T d1h6ua2         137 DLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD------IS-PLASLPNLIEVHLKNN-QI  207 (227)
T ss_dssp             CSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------CG-GGGGCTTCCEEECTTS-CC
T ss_pred             hhhhhchhh-hhccccccccccccccccccchhhcccccceecccCCCccCC------Ch-hhcCCCCCCEEECcCC-cC
Confidence            999888654 467889999999999986555568999999999999999998      87 4889999999999998 58


Q ss_pred             cccCCCC--CCCceEEec
Q 045186          161 QSLPQIP--PNLWLVRAN  176 (411)
Q Consensus       161 ~~lp~l~--~~L~~L~~~  176 (411)
                      +.++.+.  ++|+.|+++
T Consensus       208 t~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         208 SDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CBCGGGTTCTTCCEEEEE
T ss_pred             CCCcccccCCCCCEEEee
Confidence            8887542  567777664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.60  E-value=6.8e-16  Score=145.55  Aligned_cols=174  Identities=16%  Similarity=0.201  Sum_probs=122.2

Q ss_pred             CCceeEEEEeC-CCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            1 MECLRELLLDG-TDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~-~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      |++|++|+|++ |.+. .+|.+|+++++|++|+|++|...+..|..+..+.+|+.+++++|.....+|..+++++.|+.+
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            57899999997 7787 899999999999999999976544445555566666666666665555666666666666666


Q ss_pred             EccCCCCC-ccChhh------------------------------------------------hccCCCCEEecCCCC-C
Q 045186           79 YLDGTSIT-EVPSSI------------------------------------------------ELLHGLELLNLNNCK-N  108 (411)
Q Consensus        79 ~L~~~~i~-~lp~~i------------------------------------------------~~l~~L~~L~L~~~~-~  108 (411)
                      ++++|.+. .+|..+                                                +.+++|+.|++++|. .
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            66665544 333333                                                334455555555554 1


Q ss_pred             ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCCC--CCCceEEecCCC
Q 045186          109 LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIP--PNLWLVRANGCS  179 (411)
Q Consensus       109 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~--~~L~~L~~~~c~  179 (411)
                      .....++.+++|+.|+|++|++++     .+|..++++++|+.|+|++|+.-+.+|+..  .+|+.+++.++.
T Consensus       235 ~~~~~~~~~~~L~~L~Ls~N~l~g-----~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         235 FDLGKVGLSKNLNGLDLRNNRIYG-----TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEE-----CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ccccccccccccccccCccCeecc-----cCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            122347788999999999999994     399999999999999999987666788652  344444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=6.6e-15  Score=129.86  Aligned_cols=139  Identities=15%  Similarity=0.264  Sum_probs=119.7

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      |++|++|++++|.|+.+++ ++++++|++|++++| .+..++. +.++++|+.|++++|.... + ..+..+++|+.|++
T Consensus        61 l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l  135 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLEL  135 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred             CCCcCcCccccccccCccc-ccCCccccccccccc-ccccccc-ccccccccccccccccccc-c-cccchhhhhHHhhh
Confidence            5799999999999998876 999999999999996 5666764 8899999999999865443 3 34778999999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEe
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKEL  152 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L  152 (411)
                      ++|.+..++ .+..+++|+.|++.+|.......++.+++|+.|++++|+++.      ++ .+..+++|+.|
T Consensus       136 ~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~------i~-~l~~L~~L~~L  199 (199)
T d2omxa2         136 SSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD------IS-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------CG-GGGGCTTCSEE
T ss_pred             hhhhhcccc-cccccccccccccccccccCCccccCCCCCCEEECCCCCCCC------Cc-cccCCCCCCcC
Confidence            999998876 588999999999999985444558999999999999999998      87 58888988876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.7e-14  Score=131.66  Aligned_cols=149  Identities=23%  Similarity=0.304  Sum_probs=83.7

Q ss_pred             ceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCccc-chhccCCCCCcEEE
Q 045186            3 CLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKF-PQIVASMEDLLELY   79 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~   79 (411)
                      ++++|+|++|.|+.+|+ +|.++++|++|++++|. +..+ +..+..+..++.+.+..++.+..+ |..+.++++|+.|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            46677777777776664 36667777777776643 3333 223334555556555555555554 23455566666666


Q ss_pred             ccCCCCCccCh-hhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEeccc
Q 045186           80 LDGTSITEVPS-SIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELE  155 (411)
Q Consensus        80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~  155 (411)
                      +++|.+..++. .+..+++|+.+++++|.  .+.+..+..+++|+.|++++|++..      +| ..+..+++|+.++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~------l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------VPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEECC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc------cchhhhccccccchhhhh
Confidence            66666654433 34445566666666655  2223335555666666666666655      43 344556666666666


Q ss_pred             Ccc
Q 045186          156 DCK  158 (411)
Q Consensus       156 ~c~  158 (411)
                      +|+
T Consensus       186 ~N~  188 (284)
T d1ozna_         186 QNR  188 (284)
T ss_dssp             SSC
T ss_pred             hcc
Confidence            554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=3e-14  Score=134.91  Aligned_cols=92  Identities=21%  Similarity=0.269  Sum_probs=50.9

Q ss_pred             ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      +|++|+|++++++.+|+.   +++|++|+|++ +.++++|..+   .+|+.|++++| .+..++..   .+.|++|++++
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~-N~l~~lp~~~---~~L~~L~l~~n-~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASC-NSLTELPELP---QSLKSLLVDNN-NLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCS-SCCSSCCCCC---TTCCEEECCSS-CCSCCCSC---CTTCCEEECCS
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCC-CCCcccccch---hhhhhhhhhhc-ccchhhhh---ccccccccccc
Confidence            567788888777777753   45677777776 4666777543   34555555553 33333321   12355555555


Q ss_pred             CCCCccChhhhccCCCCEEecCCC
Q 045186           83 TSITEVPSSIELLHGLELLNLNNC  106 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~  106 (411)
                      |.++.+|. ++.+++|+.|++++|
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSS
T ss_pred             cccccccc-hhhhccceeeccccc
Confidence            55555442 344455555554433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=8.3e-14  Score=133.74  Aligned_cols=170  Identities=20%  Similarity=0.303  Sum_probs=112.8

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++++.|.+++|.++.+++ +...++|+.|++++| .+..+| .+..+++|+.|++++|. +..++. ++.+++|+.|++
T Consensus       196 l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l  270 (384)
T d2omza2         196 LTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKL  270 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEEC
T ss_pred             ccccceeeccCCccCCCCc-ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCc-cCCCCc-ccccccCCEeec
Confidence            3567777888877776654 566777888888775 455554 36677788888888754 455543 666777888888


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL  160 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l  160 (411)
                      +++.++.++. +..++.++.+.+..|.......+..+++++.|++++|++++      ++ .+..+++|+.|++++| .+
T Consensus       271 ~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~------l~-~l~~l~~L~~L~L~~n-~l  341 (384)
T d2omza2         271 GANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD------IS-PVSSLTKLQRLFFANN-KV  341 (384)
T ss_dssp             CSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC------CG-GGGGCTTCCEEECCSS-CC
T ss_pred             cCcccCCCCc-cccccccccccccccccccccccchhcccCeEECCCCCCCC------Cc-ccccCCCCCEEECCCC-CC
Confidence            8777776653 55667777777777664333446667777777777777776      65 3666777777777776 45


Q ss_pred             cccCCCC--CCCceEEecCCCCCCccc
Q 045186          161 QSLPQIP--PNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       161 ~~lp~l~--~~L~~L~~~~c~~L~~l~  185 (411)
                      +.++.+.  ++|++|+++++ .++.++
T Consensus       342 ~~l~~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         342 SDVSSLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             CCCGGGGGCTTCCEEECCSS-CCCBCG
T ss_pred             CCChhHcCCCCCCEEECCCC-cCCCCh
Confidence            5554432  56777777655 345444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.8e-14  Score=132.54  Aligned_cols=171  Identities=20%  Similarity=0.212  Sum_probs=138.7

Q ss_pred             CCceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186            1 MECLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL   78 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (411)
                      +++|++|+++++.|..++.. +.++..++.+.+..+..+..+ |..+.++++|++|++++|......+..++.+.+|+.+
T Consensus        55 l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l  134 (284)
T d1ozna_          55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchh
Confidence            46899999999999977544 677899999998877788777 5567889999999999976544445667788999999


Q ss_pred             EccCCCCCccCh-hhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEecc
Q 045186           79 YLDGTSITEVPS-SIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELEL  154 (411)
Q Consensus        79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L  154 (411)
                      ++++|.++.+|. .+..+++|+.|++++|..  +.+..+..+++|+.|++++|+++.      + |..+..+++|+.|++
T Consensus       135 ~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~------i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH------VHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEEC
T ss_pred             hhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc------cChhHhhhhhhcccccc
Confidence            999999998865 577889999999999982  344568899999999999999988      5 688999999999999


Q ss_pred             cCcccccccCC----CCCCCceEEecCC
Q 045186          155 EDCKRLQSLPQ----IPPNLWLVRANGC  178 (411)
Q Consensus       155 ~~c~~l~~lp~----l~~~L~~L~~~~c  178 (411)
                      ++|.. ..++.    -.++|++|++++.
T Consensus       209 ~~N~i-~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         209 FANNL-SALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CSSCC-SCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccccc-ccccccccccccccCEEEecCC
Confidence            99764 44432    1256777777653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=6.7e-14  Score=113.88  Aligned_cols=99  Identities=30%  Similarity=0.379  Sum_probs=75.7

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCC
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTS   84 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~   84 (411)
                      |+|+|++|+|+.++. ++++++|++|++++| .++.+|..+..+++|+.|++++ +.++.+|. ++.+++|+.|++++|.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD-NALENVDG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCC-ccCcchhhhhhhhccccccccc-ccccccCc-cccccccCeEECCCCc
Confidence            578888888888875 888888888888874 6778887788888888888888 46677764 7788888888888888


Q ss_pred             CCccCh--hhhccCCCCEEecCCCC
Q 045186           85 ITEVPS--SIELLHGLELLNLNNCK  107 (411)
Q Consensus        85 i~~lp~--~i~~l~~L~~L~L~~~~  107 (411)
                      |+.+|.  .++.+++|+.|++++|.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCc
Confidence            886663  45566666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-14  Score=134.79  Aligned_cols=171  Identities=22%  Similarity=0.254  Sum_probs=120.7

Q ss_pred             CceeEEEEeCCCCC--cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcc--cchhccCCCCCcE
Q 045186            2 ECLRELLLDGTDIK--ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKK--FPQIVASMEDLLE   77 (411)
Q Consensus         2 ~~L~~L~L~~~~l~--~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--lp~~l~~l~~L~~   77 (411)
                      .+|++|+|++|.+.  .+...+.++++|++|+|++|......+..+..+++|++|++++|+.++.  +......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            46888898888776  3455578888999999998854445566677888899999999887763  3344556788999


Q ss_pred             EEccCC-CCC--ccChhhhc-cCCCCEEecCCCC-CChhH----HHhhccccceeecCCCC-ccccccccccchhhhcCC
Q 045186           78 LYLDGT-SIT--EVPSSIEL-LHGLELLNLNNCK-NLWTT----IIYIMAFARSFQFDGKE-FISCSFDVVFSVSISGLL  147 (411)
Q Consensus        78 L~L~~~-~i~--~lp~~i~~-l~~L~~L~L~~~~-~~~~~----~l~~l~~L~~L~Ls~n~-~~~~~~~~~lp~~l~~l~  147 (411)
                      |++++| .++  .++..+.. .++|+.|++++|. .....    ....+++|++|++++|. ++.     ..+..+.+++
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-----~~~~~l~~~~  200 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-----DCFQEFFQLN  200 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-----GGGGGGGGCT
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCc-----hhhhhhcccC
Confidence            999886 454  33344444 3689999998875 23322    25678889999998874 443     1345677888


Q ss_pred             CCCEecccCcccccc-----cCCCCCCCceEEecCC
Q 045186          148 NLKELELEDCKRLQS-----LPQIPPNLWLVRANGC  178 (411)
Q Consensus       148 ~L~~L~L~~c~~l~~-----lp~l~~~L~~L~~~~c  178 (411)
                      +|++|+|++|..+++     +... ++|+.|++.+|
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~-~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcC-CCCCEEeeeCC
Confidence            999999999877653     2222 57888888777

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=2.3e-13  Score=130.63  Aligned_cols=163  Identities=21%  Similarity=0.306  Sum_probs=128.3

Q ss_pred             CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186            1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL   80 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (411)
                      +++|++|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|++|+++++ .+..+++ +..+..++.+.+
T Consensus       218 ~~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~~-~l~~~~~-~~~~~~l~~l~~  292 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLEL  292 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEEC
T ss_pred             cCCCCEEECCCCCCCCcch-hhcccccchhccccC-ccCCCCc-ccccccCCEeeccCc-ccCCCCc-cccccccccccc
Confidence            3678999999999888764 888999999999986 4666654 778899999999885 4555654 667888999999


Q ss_pred             cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186           81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL  160 (411)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l  160 (411)
                      ..|.++.++ .+..+++++.|++++|.......+..+++|++|++++|.++.      ++ .+..+++|++|++++|+ +
T Consensus       293 ~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~------l~-~l~~l~~L~~L~l~~N~-l  363 (384)
T d2omza2         293 NENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD------VS-SLANLTNINWLSAGHNQ-I  363 (384)
T ss_dssp             CSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC------CG-GGGGCTTCCEEECCSSC-C
T ss_pred             ccccccccc-ccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC------Ch-hHcCCCCCCEEECCCCc-C
Confidence            999888765 478889999999999874433448889999999999999988      77 58889999999998874 6


Q ss_pred             cccCCCC--CCCceEEecC
Q 045186          161 QSLPQIP--PNLWLVRANG  177 (411)
Q Consensus       161 ~~lp~l~--~~L~~L~~~~  177 (411)
                      +.++++.  ++|+.|++++
T Consensus       364 ~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         364 SDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             CBCGGGTTCTTCSEEECCC
T ss_pred             CCChhhccCCCCCEeeCCC
Confidence            6665432  4666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=4.7e-13  Score=125.13  Aligned_cols=176  Identities=20%  Similarity=0.252  Sum_probs=122.1

Q ss_pred             eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186            4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG   82 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (411)
                      ++.++-++.+++++|..+.  ++|++|+|++| .++.+|+ .+.++++|++|++++|......|..+.++++|+.|++++
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            3566667778999998774  68999999995 7888886 588999999999999776655577899999999999999


Q ss_pred             CCCCccChhhhccCCCCEEecCCCCCC--hh--------------------------HHHhhccccceeecCCCCcccc-
Q 045186           83 TSITEVPSSIELLHGLELLNLNNCKNL--WT--------------------------TIIYIMAFARSFQFDGKEFISC-  133 (411)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~--~~--------------------------~~l~~l~~L~~L~Ls~n~~~~~-  133 (411)
                      |.++.+|..+  ...|..|.+.+|...  ..                          ..+..+++|+.+++++|++... 
T Consensus        89 n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          89 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             SCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC
Confidence            9988877532  234555555444310  00                          1134444555555555443321 


Q ss_pred             ---------------ccccccchhhhcCCCCCEecccCcccccccCCC----CCCCceEEecCCCCCCcccC
Q 045186          134 ---------------SFDVVFSVSISGLLNLKELELEDCKRLQSLPQI----PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       134 ---------------~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l----~~~L~~L~~~~c~~L~~l~~  186 (411)
                                     ......+..+..++.++.|++++| .+..++..    .++|++|++++| .|+++|.
T Consensus       167 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~  236 (305)
T d1xkua_         167 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPG  236 (305)
T ss_dssp             SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred             cccCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeecccc-ccccccc
Confidence                           001123456788899999999997 45665432    278999999998 5777753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-13  Score=117.40  Aligned_cols=126  Identities=13%  Similarity=0.113  Sum_probs=94.4

Q ss_pred             ccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhh-hccCCCC
Q 045186           21 IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSI-ELLHGLE   99 (411)
Q Consensus        21 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~   99 (411)
                      +.++.+|++|+|++| .+..+|..+..+++|+.|+|++| .+..++ .+..+++|++|++++|.++.+|..+ ..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            667778888888884 57777765566788888888884 566674 4677888888888888888777653 5688888


Q ss_pred             EEecCCCCCCh-h--HHHhhccccceeecCCCCccccccccccch----hhhcCCCCCEeccc
Q 045186          100 LLNLNNCKNLW-T--TIIYIMAFARSFQFDGKEFISCSFDVVFSV----SISGLLNLKELELE  155 (411)
Q Consensus       100 ~L~L~~~~~~~-~--~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~----~l~~l~~L~~L~L~  155 (411)
                      .|++++|.... .  ..+..+++|++|++++|.++.      +|.    .+..+++|+.||-.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~------~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN------KKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG------STTHHHHHHHHCTTCSEETTE
T ss_pred             cceeccccccccccccccccccccchhhcCCCcccc------ccchHHHHHHHCCCcCeeCCC
Confidence            88888887322 2  347788889999999998877      663    47788999988754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=6.5e-14  Score=122.62  Aligned_cols=126  Identities=20%  Similarity=0.163  Sum_probs=97.2

Q ss_pred             eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186            5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT   83 (411)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (411)
                      +.++.++++++.||..+.  +++++|+|++|.....+ +..+..+++|+.|+|++|......+..+..+++|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            467888888888887663  68899999986443334 344577889999999987666666677888899999999999


Q ss_pred             CCCccCh-hhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccc
Q 045186           84 SITEVPS-SIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        84 ~i~~lp~-~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      .|+.+|. .+.++++|+.|+|++|.  .+.+..+..+++|++|+|++|.+..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9997765 47788889999988887  3334557788888888888887765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.1e-14  Score=133.76  Aligned_cols=178  Identities=21%  Similarity=0.317  Sum_probs=128.3

Q ss_pred             CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCcc--cccccCCCCCccEEEeeCCCCCcc--cchhcc-CCCC
Q 045186            1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLS--LPIAISSLKCLRNLKLSGCSKLKK--FPQIVA-SMED   74 (411)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~Ls~c~~l~~--lp~~l~-~l~~   74 (411)
                      +++|++|+|++|.+. ..+..++.+++|++|+|++|..++.  +......+++|++|++++|..+..  ++..+. ..++
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            478999999999887 5566788999999999999988764  333345689999999999987753  333333 3478


Q ss_pred             CcEEEccCC--CCC--ccChhhhccCCCCEEecCCCCCChhH---HHhhccccceeecCCC-CccccccccccchhhhcC
Q 045186           75 LLELYLDGT--SIT--EVPSSIELLHGLELLNLNNCKNLWTT---IIYIMAFARSFQFDGK-EFISCSFDVVFSVSISGL  146 (411)
Q Consensus        75 L~~L~L~~~--~i~--~lp~~i~~l~~L~~L~L~~~~~~~~~---~l~~l~~L~~L~Ls~n-~~~~~~~~~~lp~~l~~l  146 (411)
                      |+.|+++++  .++  .+.....++++|+.|++++|..+.+.   .+..+++|++|+|++| .++.     .-...++++
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~-----~~l~~L~~~  224 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-----ETLLELGEI  224 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-----GGGGGGGGC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh-----HHHHHHhcC
Confidence            999999986  354  35555678899999999999865543   3778899999999996 4443     123457889


Q ss_pred             CCCCEecccCcccccccCCCCCCCceEEecCCCCCCcc
Q 045186          147 LNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTL  184 (411)
Q Consensus       147 ~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~L~~l  184 (411)
                      ++|+.|++.+|..-..++.+...+..|.+ +|..+..+
T Consensus       225 ~~L~~L~l~~~~~d~~l~~l~~~lp~L~i-~~~~ls~~  261 (284)
T d2astb2         225 PTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTI  261 (284)
T ss_dssp             TTCCEEECTTSSCTTCHHHHHHHSTTSEE-SCCCSCCT
T ss_pred             CCCCEEeeeCCCCHHHHHHHHHhCccccc-cCccCCCC
Confidence            99999999998433333333233333444 45555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-13  Score=115.90  Aligned_cols=120  Identities=20%  Similarity=0.218  Sum_probs=80.8

Q ss_pred             CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEEEc
Q 045186            2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLELYL   80 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L   80 (411)
                      .+|++|+|++|.|+.++..+..+++|+.|+|++| .+.+++ .+..+++|++|++++| .+..+|+. +..+++|+.|++
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccc-cccCCCcccccccccccccee
Confidence            3567777777777777665566777777777774 566664 3667777777777774 35555543 345777777777


Q ss_pred             cCCCCCccCh--hhhccCCCCEEecCCCCCCh-----hHHHhhccccceee
Q 045186           81 DGTSITEVPS--SIELLHGLELLNLNNCKNLW-----TTIIYIMAFARSFQ  124 (411)
Q Consensus        81 ~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~-----~~~l~~l~~L~~L~  124 (411)
                      ++|.|+.++.  .+..+++|+.|++++|....     ...+..+++|+.||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7777776653  46677777777777775211     22366777777776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-12  Score=118.52  Aligned_cols=177  Identities=15%  Similarity=0.160  Sum_probs=118.6

Q ss_pred             CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L   78 (411)
                      +++++|+|++|.|+.+|. +|.++++|++|+|++|.....+|. .+..++.+++|.+..++.+..++ ..+.++++|+.|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            368888888888888876 478888899999888766555543 45678888888888776666555 456788889999


Q ss_pred             EccCCCCCccCh--hhhccCCCCEEecCCCCC--ChhHHHhhc-cccceeecCCCCccccccccccchhhhcCCCCCEec
Q 045186           79 YLDGTSITEVPS--SIELLHGLELLNLNNCKN--LWTTIIYIM-AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE  153 (411)
Q Consensus        79 ~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~--~~~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~  153 (411)
                      ++++|.+...+.  .+..++.|..+...++..  .....+..+ ..++.|++++|.++.      ++..+....+++.+.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~------i~~~~~~~~~l~~~~  182 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE------IHNCAFNGTQLDELN  182 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE------ECTTTTTTCCEEEEE
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc------cccccccchhhhccc
Confidence            998888875543  233445555555444431  111223333 467778888888877      776666666776666


Q ss_pred             ccCcccccccCCC----CCCCceEEecCCCCCCccc
Q 045186          154 LEDCKRLQSLPQI----PPNLWLVRANGCSSLVTLS  185 (411)
Q Consensus       154 L~~c~~l~~lp~l----~~~L~~L~~~~c~~L~~l~  185 (411)
                      ...++.++.+|.-    .++|++|+++++. ++.++
T Consensus       183 ~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~  217 (242)
T d1xwdc1         183 LSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLP  217 (242)
T ss_dssp             CTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCC
T ss_pred             cccccccccccHHHhcCCCCCCEEECCCCc-CCccC
Confidence            5566677777652    2677777776653 55554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.1e-12  Score=106.49  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             cEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCC
Q 045186           28 VQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCK  107 (411)
Q Consensus        28 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~  107 (411)
                      |+|+|++| .++.++. +..+++|++|++++ +.++.+|+.++.+++|+.|++++|.|+.+| .++.+++|+.|++++|.
T Consensus         1 R~L~Ls~n-~l~~l~~-l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTS-CCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCC-CCCCCcc-cccCCCCCEEECCC-CccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc
Confidence            56788874 6667764 77888888888887 466778877888888888888888888776 47777778888777776


Q ss_pred             CC--h-hHHHhhccccceeecCCCCccc
Q 045186          108 NL--W-TTIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus       108 ~~--~-~~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      ..  . ...+..+++|+.|++++|.+..
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            22  1 1235666777777777776655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=1.3e-12  Score=114.17  Aligned_cols=148  Identities=20%  Similarity=0.215  Sum_probs=110.1

Q ss_pred             CceeEEEEeCCCCCc-c-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEE
Q 045186            2 ECLRELLLDGTDIKE-L-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLEL   78 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~-l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L   78 (411)
                      +++++|+|++|.|+. + +..|+++++|+.|+|++|......+..+..+++|++|+|++| .+..+| ..+.++++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCccccc
Confidence            478999999999974 4 345899999999999997666666777888999999999995 667775 468899999999


Q ss_pred             EccCCCCCccChh-hhccCCCCEEecCCCCCChh-HHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186           79 YLDGTSITEVPSS-IELLHGLELLNLNNCKNLWT-TIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED  156 (411)
Q Consensus        79 ~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~  156 (411)
                      +|++|.|+.+|.. +..+++|++|+|++|...-. ........|+.+.+..+.++.     ..|.   .+..++.++|+.
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c-----~~p~---~l~~~~l~~L~~  179 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC-----GAPS---KVRDVQIKDLPH  179 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB-----CSST---TTTTSBGGGSCT
T ss_pred             ccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEe-----CCCh---hhcCCEeeecCH
Confidence            9999999988764 78899999999999973221 111222345666666666553     1453   344555666665


Q ss_pred             cc
Q 045186          157 CK  158 (411)
Q Consensus       157 c~  158 (411)
                      +.
T Consensus       180 n~  181 (192)
T d1w8aa_         180 SE  181 (192)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=4.2e-14  Score=124.67  Aligned_cols=124  Identities=19%  Similarity=0.221  Sum_probs=73.6

Q ss_pred             ccEEEEecC-CCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCC
Q 045186           27 LVQLSLKGC-KNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN  105 (411)
Q Consensus        27 L~~L~L~~c-~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~  105 (411)
                      ++.+++.+. ..++.+|.++..+++|++|+|++| .++.++ .++.+++|+.|+|++|.|+.+|.....+++|+.|++++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECccc-CCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            344444431 234555555666666666666663 345554 35556666666666666666665555555666666666


Q ss_pred             CCCChhHHHhhccccceeecCCCCccccccccccc--hhhhcCCCCCEecccCcc
Q 045186          106 CKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS--VSISGLLNLKELELEDCK  158 (411)
Q Consensus       106 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp--~~l~~l~~L~~L~L~~c~  158 (411)
                      |.......+..+++|+.|++++|.++.      ++  ..+..+++|+.|+|++|+
T Consensus       103 N~i~~l~~~~~l~~L~~L~L~~N~i~~------~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         103 NQIASLSGIEKLVNLRVLYMSNNKITN------WGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EECCCHHHHHHHHHSSEEEESEEECCC------HHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccccccccccccccchhcc------ccccccccCCCccceeecCCCc
Confidence            653333446666667777777766666      54  245666777777777665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.2e-11  Score=109.56  Aligned_cols=178  Identities=20%  Similarity=0.218  Sum_probs=128.0

Q ss_pred             CCceeEEEEeCCCCCc-cc-ccccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccch--hccCCCCC
Q 045186            1 MECLRELLLDGTDIKE-LP-VSIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQ--IVASMEDL   75 (411)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp-~si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~L   75 (411)
                      |++|++|+|++|.+.. ++ ..+.+++++++|.+..++.+..++ ..+.++++|+.|++++| .+...+.  .+..+..+
T Consensus        52 l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l  130 (242)
T d1xwdc1          52 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKV  130 (242)
T ss_dssp             CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC-CCCSCCCCTTTCBSSCE
T ss_pred             cchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchh-hhccccccccccccccc
Confidence            5789999999998875 44 348899999999998877776655 45688999999999996 4555543  33445666


Q ss_pred             cEEEccCCCCCccCh-hhhcc-CCCCEEecCCCCCC-hhHHHhhccccce-eecCCCCccccccccccchh-hhcCCCCC
Q 045186           76 LELYLDGTSITEVPS-SIELL-HGLELLNLNNCKNL-WTTIIYIMAFARS-FQFDGKEFISCSFDVVFSVS-ISGLLNLK  150 (411)
Q Consensus        76 ~~L~L~~~~i~~lp~-~i~~l-~~L~~L~L~~~~~~-~~~~l~~l~~L~~-L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~  150 (411)
                      ..+...++.+..++. .+..+ ..++.|++.+|... ........+++.. +.+++|+++.      +|.. +.++++|+
T Consensus       131 ~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~------l~~~~f~~l~~L~  204 (242)
T d1xwdc1         131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEE------LPNDVFHGASGPV  204 (242)
T ss_dssp             EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCC------CCTTTTTTSCCCS
T ss_pred             ccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccccc------ccHHHhcCCCCCC
Confidence            666777778887654 34444 47899999988632 2222333455444 4678888998      8854 68899999


Q ss_pred             EecccCcccccccCCC-CCCCceEEecCCCCCCcccC
Q 045186          151 ELELEDCKRLQSLPQI-PPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       151 ~L~L~~c~~l~~lp~l-~~~L~~L~~~~c~~L~~l~~  186 (411)
                      .|+|++|+ ++.+|.. ..++..|..-++.+|+.+|.
T Consensus       205 ~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         205 ILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             EEECTTSC-CCCCCSSSCTTCCEEESSSEESSSCSCC
T ss_pred             EEECCCCc-CCccCHHHHcCCcccccCcCCCCCcCCC
Confidence            99999976 7777653 46777777666666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=5.7e-14  Score=123.81  Aligned_cols=125  Identities=22%  Similarity=0.305  Sum_probs=103.4

Q ss_pred             eeEEEEeCC--CCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186            4 LRELLLDGT--DIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD   81 (411)
Q Consensus         4 L~~L~L~~~--~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (411)
                      ++.+++.+.  .+..+|.+++.+++|++|+|++| .++.++ .+..+++|+.|+|++| .++.+|.....+++|+.|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECccc-CCCCcc-cccCCccccChhhccc-ccccccccccccccccccccc
Confidence            455667663  57788889999999999999985 577886 4888999999999996 577787666666789999999


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCCCCh-h--HHHhhccccceeecCCCCccc
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCKNLW-T--TIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~--~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                      +|.|+.++ .+..+++|+.|++++|.... .  ..+..+++|+.|+|++|.+..
T Consensus       102 ~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            99999875 58899999999999997432 2  348899999999999998876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.23  E-value=4.4e-11  Score=112.53  Aligned_cols=59  Identities=15%  Similarity=0.189  Sum_probs=52.3

Q ss_pred             ccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCCCCCCceEEecCCCCCCcccC
Q 045186          117 MAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSG  186 (411)
Q Consensus       117 l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~L~~l~~  186 (411)
                      +++|++|+|++|+++.      +|..   +++|+.|+|++| .++++|+.+++|++|++++|+ |+.+|.
T Consensus       283 ~~~L~~L~Ls~N~l~~------lp~~---~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE------LPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCSC------CCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred             CCCCCEEECCCCccCc------cccc---cCCCCEEECCCC-cCCccccccCCCCEEECcCCc-CCCCCc
Confidence            5789999999999999      9854   578999999987 588999999999999999986 888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.4e-10  Score=94.45  Aligned_cols=103  Identities=17%  Similarity=0.102  Sum_probs=72.7

Q ss_pred             eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEcc
Q 045186            4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLD   81 (411)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~   81 (411)
                      .+.++.+++++.++|..+..+++|+.|++.+++.++.++. .+.++++|+.|+|++| .+..++ ..+..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceecc
Confidence            3456677777777777777778888888877666777653 4667788888888774 566664 456777888888888


Q ss_pred             CCCCCccChhhhccCCCCEEecCCCC
Q 045186           82 GTSITEVPSSIELLHGLELLNLNNCK  107 (411)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~  107 (411)
                      +|.|+.+|..+....+|+.|+|++|.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCCCcccChhhhccccccccccCCCc
Confidence            88888777765555566666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.8e-09  Score=90.54  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=58.8

Q ss_pred             CCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCCCCCccCh-hhhccCCCCEE
Q 045186           24 LSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGTSITEVPS-SIELLHGLELL  101 (411)
Q Consensus        24 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L  101 (411)
                      +...+.++..+ +.+.+.|..+..+++|++|++++++.++.++. .+.++++|+.|+|++|.|+.++. .+..+++|+.|
T Consensus         7 c~~~~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            34455667666 45666777777888888888887777777764 57778888888888888887753 35666666666


Q ss_pred             ecCCCC
Q 045186          102 NLNNCK  107 (411)
Q Consensus       102 ~L~~~~  107 (411)
                      +|++|.
T Consensus        86 ~Ls~N~   91 (156)
T d2ifga3          86 NLSFNA   91 (156)
T ss_dssp             ECCSSC
T ss_pred             eccCCC
Confidence            666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=7.8e-09  Score=100.03  Aligned_cols=104  Identities=19%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             CceeEEEEeCCCCCc--ccccccCCCCccEEEEecCCCCc-----ccccccCCCCCccEEEeeCCCCCc-----ccchhc
Q 045186            2 ECLRELLLDGTDIKE--LPVSIELLSGLVQLSLKGCKNLL-----SLPIAISSLKCLRNLKLSGCSKLK-----KFPQIV   69 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~--lp~si~~l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~Ls~c~~l~-----~lp~~l   69 (411)
                      .+|++|++++++|+.  +..-+..+++|+.|+|++|. ++     .+...+..+++|++|+|++|. ++     .+...+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHH
Confidence            367888888888873  23335667778888888874 33     344455677788888888753 43     122222


Q ss_pred             c-CCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCC
Q 045186           70 A-SMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCK  107 (411)
Q Consensus        70 ~-~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~  107 (411)
                      . ...+|++|+|++|.++.     ++..+..+++|+.|++++|.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            2 23468888888887763     34456667788888887765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.68  E-value=1.4e-08  Score=95.80  Aligned_cols=157  Identities=14%  Similarity=0.093  Sum_probs=79.1

Q ss_pred             CceeEEEEeCCCCC-----cccccccCCCCccEEEEecCCCCc----------ccccccCCCCCccEEEeeCCCCCc---
Q 045186            2 ECLRELLLDGTDIK-----ELPVSIELLSGLVQLSLKGCKNLL----------SLPIAISSLKCLRNLKLSGCSKLK---   63 (411)
Q Consensus         2 ~~L~~L~L~~~~l~-----~lp~si~~l~~L~~L~L~~c~~l~----------~lp~~i~~l~~L~~L~Ls~c~~l~---   63 (411)
                      .+|+.|+|++|.|.     .+-..+...++|+.|++++|..-.          .+...+...++|+.|+|++|..-.   
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            45677777776654     233345566777777776642211          112234456667777777654322   


Q ss_pred             -ccchhccCCCCCcEEEccCCCCCc-cC----h---------hhhccCCCCEEecCCCCCChh------HHHhhccccce
Q 045186           64 -KFPQIVASMEDLLELYLDGTSITE-VP----S---------SIELLHGLELLNLNNCKNLWT------TIIYIMAFARS  122 (411)
Q Consensus        64 -~lp~~l~~l~~L~~L~L~~~~i~~-lp----~---------~i~~l~~L~~L~L~~~~~~~~------~~l~~l~~L~~  122 (411)
                       .+...+...++|+.|++++|.+.. -.    .         .....+.|+.|.+++|.....      ..+...+.|+.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence             233444456667777777666531 00    0         012345566666665542211      11445566666


Q ss_pred             eecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186          123 FQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK  158 (411)
Q Consensus       123 L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~  158 (411)
                      |+|++|.+........+...+..+++|+.|+|++|.
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~  226 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  226 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccchhhhhcchhhhccccccccc
Confidence            666666554310011122334555666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.66  E-value=2e-08  Score=94.70  Aligned_cols=176  Identities=13%  Similarity=0.060  Sum_probs=117.7

Q ss_pred             CceeEEEEeCCCCCc-----------ccccccCCCCccEEEEecCCCCc----ccccccCCCCCccEEEeeCCCCCcc--
Q 045186            2 ECLRELLLDGTDIKE-----------LPVSIELLSGLVQLSLKGCKNLL----SLPIAISSLKCLRNLKLSGCSKLKK--   64 (411)
Q Consensus         2 ~~L~~L~L~~~~l~~-----------lp~si~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~~--   64 (411)
                      ++|+.|+++++.+..           +...+..+++|+.|+|++|..-.    .+...+...++|+.|++++|..-..  
T Consensus        59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~  138 (344)
T d2ca6a1          59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  138 (344)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccc
Confidence            678899998765432           22336678899999999874322    2444455678999999999753110  


Q ss_pred             --cc---------hhccCCCCCcEEEccCCCCC-----ccChhhhccCCCCEEecCCCCCChh-------HHHhhccccc
Q 045186           65 --FP---------QIVASMEDLLELYLDGTSIT-----EVPSSIELLHGLELLNLNNCKNLWT-------TIIYIMAFAR  121 (411)
Q Consensus        65 --lp---------~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~-------~~l~~l~~L~  121 (411)
                        +.         ......+.|+.|.+++|.+.     .+...+...+.|+.|++++|.....       ..+..+++|+
T Consensus       139 ~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~  218 (344)
T d2ca6a1         139 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK  218 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred             ccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhc
Confidence              10         11235678899999998876     2334566778999999999874332       1256778899


Q ss_pred             eeecCCCCccccccccccchhhhcCCCCCEecccCcccccc---------cCCC-CCCCceEEecCCC
Q 045186          122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS---------LPQI-PPNLWLVRANGCS  179 (411)
Q Consensus       122 ~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~---------lp~l-~~~L~~L~~~~c~  179 (411)
                      .|+|++|.+.. .....+...+..+++|++|+|++|. ++.         +... ...|++|+++++.
T Consensus       219 ~L~Ls~N~i~~-~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         219 VLDLQDNTFTH-LGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             EEECCSSCCHH-HHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             ccccccccccc-cccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            99999998754 1122244567788999999999986 322         1222 2578888888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.4e-06  Score=81.90  Aligned_cols=107  Identities=14%  Similarity=0.208  Sum_probs=73.6

Q ss_pred             CCccEEEEecCCCCccc--ccccCCCCCccEEEeeCCCCC----cccchhccCCCCCcEEEccCCCCCc-----cChhhh
Q 045186           25 SGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSKL----KKFPQIVASMEDLLELYLDGTSITE-----VPSSIE   93 (411)
Q Consensus        25 ~~L~~L~L~~c~~l~~l--p~~i~~l~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~   93 (411)
                      .+|+.||+++ +.++..  ..-+..+++|++|+|++|...    ..++..+..+++|+.|+|++|.|+.     +...+.
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            3688999987 556531  233446788999999998533    2455667788999999999998862     111222


Q ss_pred             -ccCCCCEEecCCCCCChh------HHHhhccccceeecCCCCccc
Q 045186           94 -LLHGLELLNLNNCKNLWT------TIIYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        94 -~l~~L~~L~L~~~~~~~~------~~l~~l~~L~~L~Ls~n~~~~  132 (411)
                       ...+|+.|++++|.....      ..+..+++|++|++++|.+..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence             124799999999873222      235667889999999988765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.9e-07  Score=75.73  Aligned_cols=68  Identities=18%  Similarity=0.180  Sum_probs=42.8

Q ss_pred             cchhccCCCCCcEEEccCCCCCccC---hhhhccCCCCEEecCCCCCChhHH--HhhccccceeecCCCCccc
Q 045186           65 FPQIVASMEDLLELYLDGTSITEVP---SSIELLHGLELLNLNNCKNLWTTI--IYIMAFARSFQFDGKEFIS  132 (411)
Q Consensus        65 lp~~l~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~~~~~~--l~~l~~L~~L~Ls~n~~~~  132 (411)
                      ++.....+++|++|+|++|.|+.++   ..+..+++|+.|++++|.......  ......|+.|++++|.+..
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3334456788888888888887553   345667777777777776332211  2233457777777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.72  E-value=4.7e-05  Score=63.46  Aligned_cols=36  Identities=17%  Similarity=0.214  Sum_probs=15.8

Q ss_pred             CCCccEEEEecCCCCcc-----cccccCCCCCccEEEeeCC
Q 045186           24 LSGLVQLSLKGCKNLLS-----LPIAISSLKCLRNLKLSGC   59 (411)
Q Consensus        24 l~~L~~L~L~~c~~l~~-----lp~~i~~l~~L~~L~Ls~c   59 (411)
                      .++|++|+|++++.++.     +-..+...++|++|+|++|
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence            35555555554333321     1222334444555555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=5e-06  Score=69.27  Aligned_cols=101  Identities=19%  Similarity=0.095  Sum_probs=62.7

Q ss_pred             CccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCCh----hHHHhhccccceeec
Q 045186           50 CLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLW----TTIIYIMAFARSFQF  125 (411)
Q Consensus        50 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~----~~~l~~l~~L~~L~L  125 (411)
                      ..+.|+++++....    .+..+..+..|....+.+..++.....+++|+.|+|++|....    ...+..+++|+.|+|
T Consensus        23 ~~~~Ldls~l~~~~----~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          23 SQQALDLKGLRSDP----DLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SSCCBCCCCCSSCT----TTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hhCeeecccCCCCc----hhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence            34555665533221    1222333333333333333344445678999999999998322    244778999999999


Q ss_pred             CCCCccccccccccch-hhhcCCCCCEecccCcccc
Q 045186          126 DGKEFISCSFDVVFSV-SISGLLNLKELELEDCKRL  160 (411)
Q Consensus       126 s~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~~c~~l  160 (411)
                      ++|.+.+      ++. ......+|+.|++++|+-.
T Consensus        99 s~N~i~~------l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          99 SGNELKS------ERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             TTSCCCC------GGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             ccCcccc------chhhhhhhccccceeecCCCCcC
Confidence            9999988      764 2233457899999998743

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.52  E-value=6.6e-05  Score=62.51  Aligned_cols=111  Identities=12%  Similarity=0.111  Sum_probs=70.8

Q ss_pred             CCCCccEEEeeCCCCCc-----ccchhccCCCCCcEEEccCCCCC-----ccChhhhccCCCCEEecCCCCCChhH----
Q 045186           47 SLKCLRNLKLSGCSKLK-----KFPQIVASMEDLLELYLDGTSIT-----EVPSSIELLHGLELLNLNNCKNLWTT----  112 (411)
Q Consensus        47 ~l~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~----  112 (411)
                      +.++|++|+|++++.++     .+-..+...+.|+.|+|++|.+.     .+...+...+.|+.|+|++|......    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            45788888888755443     23345666778888888888776     22234556678888888888633322    


Q ss_pred             --HHhhccccceeecCCCCcccc--ccccccchhhhcCCCCCEecccCc
Q 045186          113 --IIYIMAFARSFQFDGKEFISC--SFDVVFSVSISGLLNLKELELEDC  157 (411)
Q Consensus       113 --~l~~l~~L~~L~Ls~n~~~~~--~~~~~lp~~l~~l~~L~~L~L~~c  157 (411)
                        .+...++|++|+|++|.+...  .....+...+...++|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence              255557788888888754431  111123445566788888888664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.47  E-value=9.8e-05  Score=61.20  Aligned_cols=15  Identities=7%  Similarity=-0.066  Sum_probs=7.7

Q ss_pred             hhhcCCCCCEecccC
Q 045186          142 SISGLLNLKELELED  156 (411)
Q Consensus       142 ~l~~l~~L~~L~L~~  156 (411)
                      .+...++|+.|+++.
T Consensus       127 ~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         127 MLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHCSSCCEEECCC
T ss_pred             HHHhCCCcCEEeCcC
Confidence            344555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.07  E-value=0.00041  Score=57.25  Aligned_cols=110  Identities=12%  Similarity=0.136  Sum_probs=76.0

Q ss_pred             ccCCCCccEEEEecCCCCcc-----cccccCCCCCccEEEeeCCCCCc----ccchhccCCCCCcEEEccCCCCC-----
Q 045186           21 IELLSGLVQLSLKGCKNLLS-----LPIAISSLKCLRNLKLSGCSKLK----KFPQIVASMEDLLELYLDGTSIT-----   86 (411)
Q Consensus        21 i~~l~~L~~L~L~~c~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~-----   86 (411)
                      ..+.++|++|+|++++.++.     +-..+...++|++|+|++|..-.    .+-..+...+.|+.|+++++.+.     
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            45678999999987655542     33445677889999999974322    23345566788999999998876     


Q ss_pred             ccChhhhccCCCCEEecCCCC-CChh-------HHHhhccccceeecCCCCc
Q 045186           87 EVPSSIELLHGLELLNLNNCK-NLWT-------TIIYIMAFARSFQFDGKEF  130 (411)
Q Consensus        87 ~lp~~i~~l~~L~~L~L~~~~-~~~~-------~~l~~l~~L~~L~Ls~n~~  130 (411)
                      .+...+...++|+.++|..+. ...+       ..+...+.|+.|+++.+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            233456777889988776544 2211       2366788999999987754