Citrus Sinensis ID: 045187

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKMPMH
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHccccHHHHHHHHcccHHHHHHcccccHHcccccccHHHHHHccccccHHHcccccccccEEEccccEEEcccccEEEEEEccccEEEEEEccEEEEEEcccccccEEcccccccccccEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEEcccEEEEEEEEEEccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHcccEEEccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEcccEcccccEEEEEEEEEEccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mditnvlpAECISHIIslttprdacrlavvspafksaADSVLVWEKflpsdykliisNSVSSSFLITSLSKKDLYFHLchhpifinngtmsFELEKetgkkcymvgardlcigwgstpscwkwtslpesrfpevAELVYFWFFEVYARIETRILSHRTNYAAYLVFKfgkstdgfrstqlTSAVYVEGindkkrqglfldpsrntpklfhdrrdgwmeIEMGeffnkngdggtllcslfdfdrfgtrhglviqgiefrpkkmpmh
Flexible Loop (DISEMBL)
MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGindkkrqglfldpsrntpklfhDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLviqgiefrpkkmpmh
Low Complexity Region (SEG)
MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYkliisnsvsssflitslskkDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKMPMH
Disordered region (IsUnstruct)
****NVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDP**NTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEF********
Disordered Region (DISOPRED)
**ITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLI******************LYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFL***********DRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKM***
Disordered Region (DISEMBL)
MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKMPMH
Disordered Region (DISPRO)
***TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKM***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKMPMH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q9ZVQ6	272	F-box protein PP2-B10 OS=	yes	no	0.943	0.919	0.432	5e-54
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.943	0.781	0.420	2e-52
Q9ZVR5	310	Putative F-box protein PP	no	no	0.935	0.8	0.429	6e-51
Q9FLU7	251	Putative F-box protein PP	no	no	0.920	0.972	0.412	6e-50
Q949S5	257	F-box protein PP2-B11 OS=	no	no	0.916	0.945	0.417	4e-49
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.935	0.813	0.399	7e-49
Q9ZVR0	307	Putative F-box protein PP	no	no	0.932	0.804	0.390	2e-43
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.947	0.747	0.344	6e-43
Q9FV02	294	F-box protein SKIP3 OS=Ar	no	no	0.939	0.846	0.398	1e-42
Q9ZVQ9	307	F-box protein PP2-B7 OS=A	no	no	0.905	0.781	0.386	1e-41

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  211 bits (536), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 153/261 (58%), Gaps = 11/261 (4%)

Query: 7   LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLI 66
            P +CIS+IIS T PRDAC  A VS  F+S   S ++WEKFLP+DY+ +I  S   S   
Sbjct: 17  FPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFS--- 73

Query: 67  TSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
              SKK+LYF LC+ P+  ++   S  LEK +GK+C M+ A +L I WG  P  W+W  +
Sbjct: 74  ---SKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPI 130

Query: 127 PESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYV 186
           PESRF +VA+L    +FE+  R  TR+LS RT Y+AY+VFK      GF++  + +AV V
Sbjct: 131 PESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGV 190

Query: 187 EGINDKKRQGLFLDPSRNTPKLF---HDRRDGWMEIEMGEFFNKNG--DGGTLLCSLFDF 241
            G    +R   F +  R   +       R DGWMEIE+GEFFN  G  D   +  S  + 
Sbjct: 191 VGQEPSRRLICFSEAIRRGRRNVVKPKQREDGWMEIELGEFFNDGGIMDNDEIEMSALET 250

Query: 242 DRFGTRHGLVIQGIEFRPKKM 262
            +   + GL+IQGIE RP K+
Sbjct: 251 KQLNRKCGLIIQGIEIRPAKI 271

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/264 (42%), Positives = 155/264 (58%), Gaps = 14/264 (5%)

Query: 5   NVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSF 64
           +VLP +CIS+IIS T+PRDAC  A VS  F+SA  S  VW+KFLP +Y+ ++S S     
Sbjct: 62  DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSR---- 117

Query: 65  LITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                SKK+LYF LCH+P+ I +G  SF LEK +GK+C M+ +++L I WGS+P  W+W 
Sbjct: 118 --VFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWI 175

Query: 125 SLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAV 184
           S+PESRF ++AEL+   +FE+  +   R+LS  T Y+AY+VFK      G     +   +
Sbjct: 176 SIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGL 235

Query: 185 YVEGINDKKRQGLFLDPSRNTPKLF-------HDRRDGWMEIEMGEFFNKNGDGGTLLCS 237
            + G    KR   F+ P     +           R DGWME E+GEFFN+      +  S
Sbjct: 236 GLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEE-RCDEIEFS 294

Query: 238 LFDFDRFGTRHGLVIQGIEFRPKK 261
           + +      + GL+IQGIEFRP K
Sbjct: 295 VIEIKSPSWKSGLIIQGIEFRPTK 318

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  201 bits (510), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 113/263 (42%), Positives = 156/263 (59%), Gaps = 15/263 (5%)

Query: 7   LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLI 66
           LP +CIS+IIS T+PRDAC  A VS  F+SA +S  VW+KFLPSDY  ++  S   S   
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFS--- 106

Query: 67  TSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGAR-DLCIGWGSTPSCWKWTS 125
              SKK+LYF +C +P+ + +G  SF LEKE GKKC+M+  +  + I W STP  W+W S
Sbjct: 107 ---SKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWIS 163

Query: 126 LPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVY 185
           +PE+RF EV EL+   +FEV   + T+ LS  T Y+AY+VFK            + + V 
Sbjct: 164 IPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVG 223

Query: 186 VEGINDKKRQGLFLDPS-----RNTPKLFH--DRRDGWMEIEMGEFFNKNGDGGTLLCSL 238
           + G    +R   F+ PS     R T  +     R+DGWME E+G+FFN++G    +  S+
Sbjct: 224 LVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESG-CDVVDTSI 282

Query: 239 FDFDRFGTRHGLVIQGIEFRPKK 261
            +      + GL+IQGIEFRP K
Sbjct: 283 LEIKTPYWKRGLIIQGIEFRPTK 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 106/257 (41%), Positives = 150/257 (58%), Gaps = 13/257 (5%)

Query: 7   LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLI 66
           LP ECI+ +IS T+P DACR++ VS   +SAADS   WE+FLPSDY++ I NS+S     
Sbjct: 6   LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSR---- 61

Query: 67  TSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
              S K L+   C  P+ I +G  SF +EK +GKKC+M+ AR L I W  +P  W W S+
Sbjct: 62  --FSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 119

Query: 127 PESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGK-STDGFRSTQLTSAVY 185
           P+SRF EVA L+   +FE+  +I T +LS  TNY+AYLVFK  +  + GF S  L  +  
Sbjct: 120 PDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFR 179

Query: 186 VEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFG 245
                    + +FL            R DGW+EIE+GE++    D   +  S+ +    G
Sbjct: 180 STRTEVYNNRRVFLKSGTQ-----ESREDGWLEIELGEYY-VGFDDEEIEMSVLETREGG 233

Query: 246 TRHGLVIQGIEFRPKKM 262
            + G+++QGIE RPK++
Sbjct: 234 WKGGIIVQGIEIRPKEL 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q949S5|P2B11_ARATH F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1

 Score =  194 bits (494), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 150/266 (56%), Gaps = 23/266 (8%)

Query: 5   NVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSF 64
           N LP +CI+ I+SLTTP D CRL+ VS  F+SAA S  VW  FLP+D+    +   + + 
Sbjct: 2   NNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP---AGFAAPAG 58

Query: 65  LITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
           L T   +K L+F L  +P+ IN   +SF LE+++G KCYM+ AR L I WG     W W 
Sbjct: 59  LPT---RKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWI 115

Query: 125 SLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAV 184
           SLP +RF EVAEL+  W+ E+  +I   +LS  T YAAY VFK+  S  GFR    TS V
Sbjct: 116 SLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFRQPVETSLV 175

Query: 185 YVEGINDKKRQGLFLDPSRNTPKLFHD-----------RRDGWMEIEMGEFFNKNGDGGT 233
               + D +     + PS  +  L  D           RRDGW E+E+G+FF + GD G 
Sbjct: 176 ----LADTESTDNVVQPSMIS--LMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGE 229

Query: 234 LLCSLFDFDRFGTRHGLVIQGIEFRP 259
           +  SL +      + GL++ GIE RP
Sbjct: 230 IEMSLKETKGPYEKKGLIVYGIEIRP 255

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  194 bits (492), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 107/268 (39%), Positives = 156/268 (58%), Gaps = 20/268 (7%)

Query: 7   LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLI 66
           LP EC+S I+S T+P+DAC LA VS  F SA  S +VWEKF+P +Y+ +IS S +  FL 
Sbjct: 39  LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFL- 97

Query: 67  TSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
              SKK+LYF LC   + I++G  S  +EK   K+C M+ A +L I WG++P  W+W   
Sbjct: 98  ---SKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query: 127 PESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRS--TQLTSAV 184
           P++RF  VAEL+    FE+  RI +R++S +T Y+AY+V+K      GF +   ++   V
Sbjct: 155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query: 185 YVEGINDKKRQGLFLDPSRNTPKLFHD----------RRDGWMEIEMGEFFNKNG---DG 231
             + + +  R+ +  D + +      D          R+DGWMEI++GEFFN+ G   D 
Sbjct: 215 VGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDD 274

Query: 232 GTLLCSLFDFDRFGTRHGLVIQGIEFRP 259
              + +L    R   R GL+IQGIE RP
Sbjct: 275 EIEMVALEAKQRHWKR-GLIIQGIEIRP 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR0|PP2B6_ARATH Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=4 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 149/264 (56%), Gaps = 17/264 (6%)

Query: 7   LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLI 66
           LP +CIS+IIS T+PRD C  A VS +F  A     +WEKFLPS+Y+ +I       + +
Sbjct: 48  LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIP-----PWRV 102

Query: 67  TSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
            S SKKDLYF LC+ P+ + +G  SF LE  +GKKC ++ A++L I  G+ P  W+W  L
Sbjct: 103 FS-SKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIEL 161

Query: 127 PESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYV 186
            ES F +V EL+    F++   + T+ILS  T+Y+ Y+V+K      G R   +   V  
Sbjct: 162 CESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGF 221

Query: 187 EGINDKKRQGLFLDPSRNTPKLF--------HDRRDGWMEIEMGEFFNKNGDGG--TLLC 236
           +G  +  +Q +  D S +  K +          R DGWME E+G+FFN  G  G   +  
Sbjct: 222 KG-QEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEVEV 280

Query: 237 SLFDFDRFGTRHGLVIQGIEFRPK 260
           S+ D      + G++I+GIEFRPK
Sbjct: 281 SIVDVTSPNLKCGVMIEGIEFRPK 304

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 156/308 (50%), Gaps = 57/308 (18%)

Query: 5   NVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSF 64
           + LP +CIS +IS T+PRDAC +A VS + KSAA S LVWE FLPS+Y  ++  S +   
Sbjct: 33  DALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANH-- 90

Query: 65  LITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
               LSKK+++  L  + + + NG  SF +EK +GKKCYM+ A +L I WG +P+ WKW 
Sbjct: 91  ----LSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWI 146

Query: 125 SLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTD-GFRSTQLTSA 183
           ++PES+F +VAEL    +FEV  +I   +LS  T+Y+ Y+VFK       GF    + + 
Sbjct: 147 TVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG 206

Query: 184 VYVEGINDKKRQGLFLDPSRNT---------------PKLFHDRR--------------- 213
           V   G    K+   F   + ++                + F  RR               
Sbjct: 207 VGFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEG 266

Query: 214 ---------------DGWMEIEMGEFFNKNGDGG-----TLLCSLFDFDRFGTRHGLVIQ 253
                          DGW E+E+G+F+  NG  G      +  S+ +      + GL+IQ
Sbjct: 267 ERERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQ 326

Query: 254 GIEFRPKK 261
           GIE RP++
Sbjct: 327 GIEIRPER 334

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FV02|SKIP3_ARATH F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/266 (39%), Positives = 143/266 (53%), Gaps = 17/266 (6%)

Query: 7   LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLI 66
           LP  CIS+IIS T+P DAC  A VS  F+SA  S +VWEKFLP+DY+ +I+ S   S   
Sbjct: 27  LPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSRVFS--- 83

Query: 67  TSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCI-GWGSTPSCWKWTS 125
              SKK+LYF LC+ P+ I +G MS  LEK +GK+C M+ A  + +         + W  
Sbjct: 84  ---SKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIP 140

Query: 126 LPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVY 185
            PESRF  VA L   + FE   R+ TR+LS RT Y+ Y+VFK   +  GF+   + + V 
Sbjct: 141 CPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAVVG 200

Query: 186 VEGINDKKRQGLFLDP-------SRNTPKLFHDRRDGWMEIEMGEFFNKNG--DGGTLLC 236
           + G  +  R  +  D         R        R DGWME E+GEF+N+ G      +  
Sbjct: 201 IVG-EESFRSFICFDTHGKGQARKRKVVAKPELREDGWMETEIGEFYNEGGLMSSDEVEI 259

Query: 237 SLFDFDRFGTRHGLVIQGIEFRPKKM 262
           S  +      + GLVI GIE RP K+
Sbjct: 260 STVEGKYAQQKRGLVILGIEIRPAKI 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ9|PP2B7_ARATH F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP2B7 PE=2 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/277 (38%), Positives = 149/277 (53%), Gaps = 37/277 (13%)

Query: 7   LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLI 66
           LP ECIS IIS T+PRDAC  A+VS  F+SA  S +VWEKF+P +Y+ ++S S   S   
Sbjct: 43  LPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLSRSQHFS--- 99

Query: 67  TSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
              SKK+L+F LC   + IN       +EK TGK+C M+ A  L +   ST   WKW + 
Sbjct: 100 ---SKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNL---STHHTWKWITN 153

Query: 127 PESRFPE-VAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVY 185
           P S + E V EL+   +FE+  R  TR LS RT Y+ Y+VF       GF    + + V 
Sbjct: 154 PVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYGFAYVAMEAVVR 213

Query: 186 VEG--INDKKRQGL---------------FLDPSRNTPKLFHDRRDGWMEIEMGEFFNKN 228
           + G  +++  R+ +                ++P R        R DGWMEIE+GEFFN+ 
Sbjct: 214 MVGHELSESCRRYVCFHEAMEWQFLTRKNLVNPER--------REDGWMEIEIGEFFNEG 265

Query: 229 G--DGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKMP 263
              +   +  S+ +  +  T+ GL+IQGIE RP K P
Sbjct: 266 AFRNNDEIEMSVSETTQRNTKRGLIIQGIEIRPTKKP 302

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
118485882	267	unknown [Populus trichocarpa]	0.988	0.981	0.541	4e-73
449433185	267	PREDICTED: putative F-box protein PP2-B1	0.973	0.966	0.524	3e-68
224053426	243	f-box family protein [Populus trichocarp	0.905	0.987	0.522	4e-68
449487520	268	PREDICTED: putative F-box protein PP2-B1	0.977	0.966	0.513	2e-65
449432438	268	PREDICTED: putative F-box protein PP2-B1	0.977	0.966	0.513	3e-65
449518583	267	PREDICTED: putative F-box protein PP2-B1	0.973	0.966	0.505	6e-64
225470220	277	PREDICTED: F-box protein PP2-B10-like [V	0.954	0.913	0.451	3e-57
296088854	287	unnamed protein product [Vitis vinifera]	0.950	0.878	0.458	5e-57
296088859	311	unnamed protein product [Vitis vinifera]	0.954	0.813	0.451	5e-57
296088861	312	unnamed protein product [Vitis vinifera]	0.947	0.804	0.458	6e-56

>gi|118485882|gb|ABK94787.1| unknown [Populus trichocarpa]

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 144/266 (54%), Positives = 188/266 (70%), Gaps = 4/266 (1%)

Query: 1   MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDY-KLIISNS 59
           MD++ VLP EC++HIIS T+PRDAC  A+VS  F+SAADS  VW+ FLPSD+ ++I S+ 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 60  VSSSFLITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPS 119
            SSS  +T+LSKK+LYFHLC++PI +NNG MSF LEK  GKKCYM+GAR L I WG TP 
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 120 CWKWTSLP-ESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRST 178
            W W  LP +SRF EVAEL Y W+ +V  RI+ +I S +T YAAYLVFK   ST GF   
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 179 QLTSAVYVEGINDKKRQGLFLD--PSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLC 236
            +  +V  E    +++  +FLD  P  + P L  +R DGWMEIEMGEFF  N D G+++ 
Sbjct: 181 LVELSVNFEESVGEEKLHVFLDVPPDYDMPPLPRERSDGWMEIEMGEFFYDNEDDGSVVA 240

Query: 237 SLFDFDRFGTRHGLVIQGIEFRPKKM 262
            L + D + T++GL+I+GIEFRPK++
Sbjct: 241 YLREVDNYTTKNGLIIEGIEFRPKEV 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433185|ref|XP_004134378.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 140/267 (52%), Positives = 179/267 (67%), Gaps = 9/267 (3%)

Query: 1   MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSV 60
           MDI N LPAECIS I++ T+P+DACR AV SPAF+SAADS  +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECISSILAFTSPKDACRSAVASPAFRSAADSDAIWTTFLPSDYRQIISQAS 59

Query: 61  SSSFLITSLS--KKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTP 118
           SSS      S  KK LY  L  H +FI +G  SF LEKE+GKKCYM+GARDL I WGS+P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLEIVWGSSP 119

Query: 119 SCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKST---DGF 175
           + W W S+P SRF EVAEL Y W+ E+  +IE R LS +T YAAY VFKF +     DGF
Sbjct: 120 AYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKFKEGDFQHDGF 179

Query: 176 RSTQLTSAVYVEG--INDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGT 233
            +  ++  VY EG  + +   + + LDP   +P +  +R DGWME+EMGEFFN+ GD G 
Sbjct: 180 GTKPVSLEVYFEGEEVGEDGTKMVLLDPPEGSPVVCKERSDGWMEVEMGEFFNELGDDGI 239

Query: 234 LLCSLFDFDRFGTRHGLVIQGIEFRPK 260
           ++  L   DR   + GL+++G+E RPK
Sbjct: 240 IIFHLMQIDRL-RKGGLIVEGVEIRPK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053426|ref|XP_002297813.1| f-box family protein [Populus trichocarpa] gi|222845071|gb|EEE82618.1| f-box family protein [Populus trichocarpa]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 138/264 (52%), Positives = 176/264 (66%), Gaps = 24/264 (9%)

Query: 1   MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDY-KLIISNS 59
           MD++ VLP EC++HIIS T+PRDAC  A+VS  F+SAADS  VW+ FLPSD+ ++I S+ 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 60  VSSSFLITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPS 119
            SSS  +T+LSKK+LYFHLC++PI +NNG MSF LEK  GKKCYM+GAR L I WG TP 
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 120 CWKWTSLP-ESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRST 178
            W W  LP +SRF EVAEL Y W+ +V  RI+ +I S +T YAAYLVFK   ST GF   
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 179 QLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSL 238
            +  +V  E                        R DGWMEIEMGEFF  N D G+++  L
Sbjct: 181 LVELSVNFE----------------------ESRSDGWMEIEMGEFFYDNEDDGSVVAYL 218

Query: 239 FDFDRFGTRHGLVIQGIEFRPKKM 262
            + D + T++GL+I+GIEFRPK++
Sbjct: 219 REVDNYTTKNGLIIEGIEFRPKEV 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487520|ref|XP_004157667.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 178/267 (66%), Gaps = 8/267 (2%)

Query: 1   MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSV 60
           MDI N LPAEC+S I++ T+P+DACR AV SPAF+SAADS  +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECLSSILAFTSPKDACRSAVASPAFRSAADSDALWITFLPSDYRQIISQAS 59

Query: 61  SSSFLITSLS--KKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTP 118
           SSS      S  KK LYF L  H +FI +G  SF LEKE+GKKCYM+GARDL I WG++P
Sbjct: 60  SSSTSSFLNSLSKKALYFRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 119 SCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGK---STDGF 175
             W W S+P SRF EVAEL   W+ E+  +IE R LS +T YAAY VFK  +   S  GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 176 RSTQLTSAVYVEG--INDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGT 233
           +   ++  V+ EG  + +  R+ + LDP   +  +  +R DGWME+EMGE FN+ GD GT
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGT 239

Query: 234 LLCSLFDFDRFGTRHGLVIQGIEFRPK 260
           ++  L   D F ++ GL+++GIE RPK
Sbjct: 240 IIFHLKQIDNFISKGGLIVEGIEIRPK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432438|ref|XP_004134006.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 178/267 (66%), Gaps = 8/267 (2%)

Query: 1   MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSV 60
           MDI N LPAEC+S I++ T+P+DACR AVVSPAF+SAADS  +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SSSFLITSLS--KKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTP 118
           SSS      S  KK LY  L  H +FI +G  SF LEKE+GKKCYM+GARDL I WG++P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 119 SCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGK---STDGF 175
             W W S+P SRF EVAEL   W+ E+  +IE R LS +T YAAY VFK  +   S  GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 176 RSTQLTSAVYVEG--INDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGT 233
           +   ++  V+ EG  + +  R+ + LDP   +  +  +R DGWME+EMGE FN+ GD GT
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGT 239

Query: 234 LLCSLFDFDRFGTRHGLVIQGIEFRPK 260
           ++  L   D F ++ GL+++GIE RPK
Sbjct: 240 IIFHLKQIDNFISKGGLIVEGIEIRPK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518583|ref|XP_004166316.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  250 bits (638), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 135/267 (50%), Positives = 177/267 (66%), Gaps = 9/267 (3%)

Query: 1   MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSV 60
           MDI N LPAEC+S I++ T+P+DACR AVVSPAF+SAADS  +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SSSFLITSLS--KKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTP 118
           SSS      S  KK LY  L  H +FI +G   F LEK +GKKCYM+GARDL I WGS+P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSGFVLEKGSGKKCYMIGARDLEIVWGSSP 119

Query: 119 SCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKST---DGF 175
             W W S+P SRF EVAEL Y W+ E+  +IE R LS +T YAAY VFK  +       F
Sbjct: 120 EYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKLVEDNFCRHVF 179

Query: 176 RSTQLTSAVYVEG--INDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGT 233
            +T ++  V+ EG  + + +R+ + LDP   +  +  +R DGWME+EMGEFFN+ GD G+
Sbjct: 180 ETTPVSLEVHFEGAEVEEDRRKRVILDPLEGSSVVCVERSDGWMEVEMGEFFNECGDDGS 239

Query: 234 LLCSLFDFDRFGTRHGLVIQGIEFRPK 260
           ++  L   DR   + GL+++G+E RPK
Sbjct: 240 IIFHLMQIDRL-RKGGLIVEGVEIRPK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470220|ref|XP_002270580.1| PREDICTED: F-box protein PP2-B10-like [Vitis vinifera]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/257 (45%), Positives = 165/257 (64%), Gaps = 4/257 (1%)

Query: 5   NVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSF 64
           + LP +CI+ I++ T+ RDACR++ VSP F SAA+S  +WE FLP+DY+ II  S  SS 
Sbjct: 21  SALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSA 80

Query: 65  LITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                SKK+L+F LC+ P+ I+ G  SF L+KE+GKKCYM+ AR+L I W  TP  W W 
Sbjct: 81  RQDFSSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWI 140

Query: 125 SLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAV 184
           S P+SRF EVA L   W+F +  ++ T +LS  TNYAAYL+F+     DGF    + S++
Sbjct: 141 SPPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSI 200

Query: 185 YVEGINDKKRQGLFLDPSRN-TPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDR 243
            V G  +  ++ ++LDP  + +P     R DGW E+E+GEFFN+  +   L  S+ + + 
Sbjct: 201 GVTG-GETAKKVIYLDPEHDISPN--PTRIDGWYEVELGEFFNEGRESVELEMSIMEVNT 257

Query: 244 FGTRHGLVIQGIEFRPK 260
           F  + GL+I+GIE RPK
Sbjct: 258 FIGKSGLLIEGIEIRPK 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088854|emb|CBI38318.3| unnamed protein product [Vitis vinifera]

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 121/264 (45%), Positives = 167/264 (63%), Gaps = 12/264 (4%)

Query: 7   LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLI 66
           LP  CI+ +++LT+PRD CR++ V+  F SAA+S  +WE+FLP+DY+ II+ S  SS   
Sbjct: 23  LPEGCIADVLALTSPRDVCRMSAVASVFLSAAESDALWERFLPADYREIIARSSESSSWR 82

Query: 67  TSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
              SKK+LYF LC +P+ I+ G  SF LEK +GKKCYM+ +R+L I WG TP  W+WTSL
Sbjct: 83  HFSSKKELYFTLCDYPLLIDEGKKSFWLEKRSGKKCYMLASRELTIIWGDTPGYWEWTSL 142

Query: 127 PESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYV 186
           PESRFPEVA L    +FE+  +I T +LS RTNYAAYLVF  G+S  GF    + S++ +
Sbjct: 143 PESRFPEVAYLQAVCWFEIRGKINTCMLSPRTNYAAYLVFHAGRS-HGFEDVPVESSIEI 201

Query: 187 EGINDKKRQGLFLDPSRN----TPKLFHD------RRDGWMEIEMGEFFNKNGDGGTLLC 236
            G N+   + ++L   R     T  +  D      R D W EIE+GEFF + G+   L  
Sbjct: 202 VG-NETTTRVIYLARYRKNEEPTSSIRSDLPYPKKREDSWFEIELGEFFIEGGEDTELEI 260

Query: 237 SLFDFDRFGTRHGLVIQGIEFRPK 260
           +L +      + GL+++GIE RPK
Sbjct: 261 TLMEVKAGHWKDGLIVEGIEIRPK 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088859|emb|CBI38323.3| unnamed protein product [Vitis vinifera]

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 116/257 (45%), Positives = 165/257 (64%), Gaps = 4/257 (1%)

Query: 5   NVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSF 64
           + LP +CI+ I++ T+ RDACR++ VSP F SAA+S  +WE FLP+DY+ II  S  SS 
Sbjct: 55  SALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSA 114

Query: 65  LITSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                SKK+L+F LC+ P+ I+ G  SF L+KE+GKKCYM+ AR+L I W  TP  W W 
Sbjct: 115 RQDFSSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWI 174

Query: 125 SLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAV 184
           S P+SRF EVA L   W+F +  ++ T +LS  TNYAAYL+F+     DGF    + S++
Sbjct: 175 SPPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSI 234

Query: 185 YVEGINDKKRQGLFLDPSRN-TPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDR 243
            V G  +  ++ ++LDP  + +P     R DGW E+E+GEFFN+  +   L  S+ + + 
Sbjct: 235 GVTG-GETAKKVIYLDPEHDISPN--PTRIDGWYEVELGEFFNEGRESVELEMSIMEVNT 291

Query: 244 FGTRHGLVIQGIEFRPK 260
           F  + GL+I+GIE RPK
Sbjct: 292 FIGKSGLLIEGIEIRPK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088861|emb|CBI38325.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 122/266 (45%), Positives = 158/266 (59%), Gaps = 15/266 (5%)

Query: 7   LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLI 66
           LP EC++ IIS T+P DA R++VVS   + AADS  VWE FLP D++ II+ +  SS   
Sbjct: 47  LPLECVTEIISRTSPPDASRMSVVSTDLRFAADSDAVWEGFLPKDFQSIIAGAAGSSRAE 106

Query: 67  TSLSKKDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
              SKK+LY  L   PI I  G  SF +EK +GKKCYM+ AR L I WG TP  WKW SL
Sbjct: 107 VQ-SKKELYLRLSDEPILIEGGLKSFSIEKRSGKKCYMIAARALTIEWGDTPMYWKWISL 165

Query: 127 PESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYV 186
           P+SRF EVAEL+   +FE+  RI T +L  +TNYAAYLVF     T GF    +  ++ +
Sbjct: 166 PQSRFKEVAELISVCWFEIRGRINTCLLCLKTNYAAYLVFNSTTETYGFEYHPVEVSIGI 225

Query: 187 EGINDKKRQGLFLDPSRNTPKLF------------HDRRDGWMEIEMGEFFNKNGDGGTL 234
            G      Q ++L+PS+   + F              R DGW+EIE+GEFFN+ GD   L
Sbjct: 226 IG-GRISTQSVYLNPSKTQTRRFPVVPRRGNCQHPKKREDGWLEIELGEFFNEGGD-EEL 283

Query: 235 LCSLFDFDRFGTRHGLVIQGIEFRPK 260
             S+ +      + GL+IQGIE RPK
Sbjct: 284 EMSVLEVKAGNWKCGLIIQGIEIRPK 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.935	0.911	0.417	1.6e-47
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.943	0.781	0.409	3.3e-47
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.935	0.8	0.410	3.8e-46
TAIR|locus:2016349	257	PP2-B11 "phloem protein 2-B11"	0.939	0.968	0.411	1.9e-44
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.920	0.972	0.389	4.5e-43
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.690	0.544	0.408	1.1e-42
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.935	0.813	0.376	1.4e-41
TAIR|locus:2056166	307	PP2-B6 "phloem protein 2-B6" [	0.935	0.807	0.376	4.8e-39
TAIR|locus:2056176	307	PP2-B7 "phloem protein 2-B7" [	0.935	0.807	0.382	4.9e-37
TAIR|locus:2056271	284	PP2-B5 "phloem protein 2-B5" [	0.898	0.838	0.394	8e-37

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 109/261 (41%), Positives = 146/261 (55%)

Query:     8 PAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYXXXXXXXXXXXXXXX 67
             P +CIS+IIS T PRDAC  A VS  F+S   S ++WEKFLP+DY               
Sbjct:    18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSSKK- 76

Query:    68 XXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLP 127
                  +LYF LC+ P+  ++   S  LEK +GK+C M+ A +L I WG  P  W+W  +P
Sbjct:    77 -----ELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIP 131

Query:   128 ESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVE 187
             ESRF +VA+L    +FE+  R  TR+LS RT Y+AY+VFK      GF++  + +AV V 
Sbjct:   132 ESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVV 191

Query:   188 GINDKKRQGLFLDP----SRNTPKLFHDRRDGWMEIEMGEFFNKNG--DGGTLLCSLFDF 241
             G    +R   F +      RN  K    R DGWMEIE+GEFFN  G  D   +  S  + 
Sbjct:   192 GQEPSRRLICFSEAIRRGRRNVVKP-KQREDGWMEIELGEFFNDGGIMDNDEIEMSALET 250

Query:   242 DRFGTRHGLVIQGIEFRPKKM 262
              +   + GL+IQGIE RP K+
Sbjct:   251 KQLNRKCGLIIQGIEIRPAKI 271

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 108/264 (40%), Positives = 149/264 (56%)

Query:     5 NVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYXXXXXXXXXXXX 64
             +VLP +CIS+IIS T+PRDAC  A VS  F+SA  S  VW+KFLP +Y            
Sbjct:    62 DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS 121

Query:    65 XXXXXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                     +LYF LCH+P+ I +G  SF LEK +GK+C M+ +++L I WGS+P  W+W 
Sbjct:   122 KK------ELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWI 175

Query:   125 SLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAV 184
             S+PESRF ++AEL+   +FE+  +   R+LS  T Y+AY+VFK      G     +   +
Sbjct:   176 SIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGL 235

Query:   185 YVEGINDKKRQGLFLDPS-----RNTPKLFH--DRRDGWMEIEMGEFFNKNGDGGTLLCS 237
              + G    KR   F+ P      R T  +     R DGWME E+GEFFN+      +  S
Sbjct:   236 GLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEERCD-EIEFS 294

Query:   238 LFDFDRFGTRHGLVIQGIEFRPKK 261
             + +      + GL+IQGIEFRP K
Sbjct:   295 VIEIKSPSWKSGLIIQGIEFRPTK 318

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 108/263 (41%), Positives = 149/263 (56%)

Query:     7 LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP +CIS+IIS T+PRDAC  A VS  F+SA +S  VW+KFLPSDY              
Sbjct:    50 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSSKK 109

Query:    67 XXXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGAR-DLCIGWGSTPSCWKWTS 125
                   +LYF +C +P+ + +G  SF LEKE GKKC+M+  +  + I W STP  W+W S
Sbjct:   110 ------ELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWIS 163

Query:   126 LPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVY 185
             +PE+RF EV EL+   +FEV   + T+ LS  T Y+AY+VFK            + + V 
Sbjct:   164 IPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVG 223

Query:   186 VEGINDKKRQGLFLDPS-----RNTPKLFHD--RRDGWMEIEMGEFFNKNGDGGTLLCSL 238
             + G    +R   F+ PS     R T  +     R+DGWME E+G+FFN++G    +  S+
Sbjct:   224 LVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGCD-VVDTSI 282

Query:   239 FDFDRFGTRHGLVIQGIEFRPKK 261
              +      + GL+IQGIEFRP K
Sbjct:   283 LEIKTPYWKRGLIIQGIEFRPTK 305

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2016349 PP2-B11 "phloem protein 2-B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 107/260 (41%), Positives = 141/260 (54%)

Query:     5 NVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYXXXXXXXXXXXX 64
             N LP +CI+ I+SLTTP D CRL+ VS  F+SAA S  VW  FLP+D+            
Sbjct:     2 NNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAGLPT 61

Query:    65 XXXXXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                      L+F L  +P+ IN   +SF LE+++G KCYM+ AR L I WG     W W 
Sbjct:    62 RK------QLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWI 115

Query:   125 SLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAV 184
             SLP +RF EVAEL+  W+ E+  +I   +LS  T YAAY VFK+  S  GFR    TS V
Sbjct:   116 SLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFRQPVETSLV 175

Query:   185 YVEGIN-DKKRQ----GLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLF 239
               +  + D   Q     L  D      +    RRDGW E+E+G+FF + GD G +  SL 
Sbjct:   176 LADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLK 235

Query:   240 DFDRFGTRHGLVIQGIEFRP 259
             +      + GL++ GIE RP
Sbjct:   236 ETKGPYEKKGLIVYGIEIRP 255

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 100/257 (38%), Positives = 141/257 (54%)

Query:     7 LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP ECI+ +IS T+P DACR++ VS   +SAADS   WE+FLPSDY              
Sbjct:     6 LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRFSNK 65

Query:    67 XXXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
                    L+   C  P+ I +G  SF +EK +GKKC+M+ AR L I W  +P  W W S+
Sbjct:    66 ------QLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 119

Query:   127 PESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGK-STDGFRSTQLTSAVY 185
             P+SRF EVA L+   +FE+  +I T +LS  TNY+AYLVFK  +  + GF S  L  +  
Sbjct:   120 PDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFR 179

Query:   186 VEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFG 245
                      + +FL            R DGW+EIE+GE++    D   +  S+ +    G
Sbjct:   180 STRTEVYNNRRVFLKSGTQ-----ESREDGWLEIELGEYY-VGFDDEEIEMSVLETREGG 233

Query:   246 TRHGLVIQGIEFRPKKM 262
              + G+++QGIE RPK++
Sbjct:   234 WKGGIIVQGIEIRPKEL 250

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 78/191 (40%), Positives = 111/191 (58%)

Query:     5 NVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYXXXXXXXXXXXX 64
             + LP +CIS +IS T+PRDAC +A VS + KSAA S LVWE FLPS+Y            
Sbjct:    33 DALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLS 92

Query:    65 XXXXXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                     +++  L  + + + NG  SF +EK +GKKCYM+ A +L I WG +P+ WKW 
Sbjct:    93 KK------EIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWI 146

Query:   125 SLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTD-GFRSTQLTSA 183
             ++PES+F +VAEL    +FEV  +I   +LS  T+Y+ Y+VFK       GF    + + 
Sbjct:   147 TVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG 206

Query:   184 V-YVEGINDKK 193
             V +V  +  KK
Sbjct:   207 VGFVGKVATKK 217

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 101/268 (37%), Positives = 145/268 (54%)

Query:     7 LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP EC+S I+S T+P+DAC LA VS  F SA  S +VWEKF+P +Y              
Sbjct:    39 LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLS 98

Query:    67 XXXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
                   +LYF LC   + I++G  S  +EK   K+C M+ A +L I WG++P  W+W   
Sbjct:    99 KK----ELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query:   127 PESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYV 186
             P++RF  VAEL+    FE+  RI +R++S +T Y+AY+V+K      GF +  +   V V
Sbjct:   155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query:   187 EG--INDKKRQGLFLDPSRNTPKLFHDR----------RDGWMEIEMGEFFNKNG---DG 231
              G  + +  R+ +  D + +      DR          +DGWMEI++GEFFN+ G   D 
Sbjct:   215 VGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDD 274

Query:   232 GTLLCSLFDFDRFGTRHGLVIQGIEFRP 259
                + +L    R   R GL+IQGIE RP
Sbjct:   275 EIEMVALEAKQRHWKR-GLIIQGIEIRP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056166 PP2-B6 "phloem protein 2-B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 99/263 (37%), Positives = 141/263 (53%)

Query:     7 LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP +CIS+IIS T+PRD C  A VS +F  A     +WEKFLPS+Y              
Sbjct:    48 LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSSKK 107

Query:    67 XXXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
                   DLYF LC+ P+ + +G  SF LE  +GKKC ++ A++L I  G+ P  W+W  L
Sbjct:   108 ------DLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIEL 161

Query:   127 PESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYV 186
              ES F +V EL+    F++   + T+ILS  T+Y+ Y+V+K      G R   +   V  
Sbjct:   162 CESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGF 221

Query:   187 EGINDKKRQGLF---LDPSRNTPK--LFHDRR--DGWMEIEMGEFFNKNGDGG--TLLCS 237
             +G    K+   F    D ++  PK  L   ++  DGWME E+G+FFN  G  G   +  S
Sbjct:   222 KGQEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEVEVS 281

Query:   238 LFDFDRFGTRHGLVIQGIEFRPK 260
             + D      + G++I+GIEFRPK
Sbjct:   282 IVDVTSPNLKCGVMIEGIEFRPK 304

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2056176 PP2-B7 "phloem protein 2-B7" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 103/269 (38%), Positives = 143/269 (53%)

Query:     7 LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP ECIS IIS T+PRDAC  A+VS  F+SA  S +VWEKF+P +Y              
Sbjct:    43 LPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLSRSQHFSSKK 102

Query:    67 XXXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
                   +L+F LC   + IN       +EK TGK+C M+ A  L +   ST   WKW + 
Sbjct:   103 ------ELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNL---STHHTWKWITN 153

Query:   127 PESRFPE-VAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVY 185
             P S + E V EL+   +FE+  R  TR LS RT Y+ Y+VF       GF    + + V 
Sbjct:   154 PVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYGFAYVAMEAVVR 213

Query:   186 VEG--INDKKRQGLFLDPSRN----TPK-LFH-DRR-DGWMEIEMGEFFNKNG--DGGTL 234
             + G  +++  R+ +    +      T K L + +RR DGWMEIE+GEFFN+    +   +
Sbjct:   214 MVGHELSESCRRYVCFHEAMEWQFLTRKNLVNPERREDGWMEIEIGEFFNEGAFRNNDEI 273

Query:   235 LCSLFDFDRFGTRHGLVIQGIEFRPKKMP 263
               S+ +  +  T+ GL+IQGIE RP K P
Sbjct:   274 EMSVSETTQRNTKRGLIIQGIEIRPTKKP 302

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056271 PP2-B5 "phloem protein 2-B5" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 103/261 (39%), Positives = 145/261 (55%)

Query:     7 LPAECISHIISLT-TPRDACRLAVVSPAFKSAADSVLVWEKFLPS-DYXXXXXXXXXXXX 64
             LP +C++ I S T TPRDA   A+VS +F    +S  VWEKFLP  DY            
Sbjct:    37 LPDDCLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPPPDYVSLLPKSRVFSS 96

Query:    65 XXXXXXXXDLYFHLCHHPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                     +LYF LC  P   +NG MSF L+K +GKKC M+ A+ L I     P  WKW 
Sbjct:    97 KK------ELYFALCD-PFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWI 149

Query:   125 SLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAV 184
             S+PESRF EV EL+    F++   + TRI+S  T+Y+AY+V+      +GF+++ + + V
Sbjct:   150 SIPESRFDEVPELLNIDSFDIRGVLNTRIISPGTHYSAYIVYTKTSHFNGFQTSPIQAGV 209

Query:   185 YVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNG-DGGTLL-CSLFDFD 242
                G    +R G+     R   K    R+DGWME ++G+F+N+ G  G  L+  S+ D  
Sbjct:   210 ---GF---QRHGMSKTFIRFDSK---KRQDGWMEAKIGDFYNEGGLIGFNLIEVSVVDVA 260

Query:   243 RF---GTRHGLVIQGIEFRPK 260
             R+     + GL+I+GIEFRPK
Sbjct:   261 RYPHMNMKSGLIIEGIEFRPK 281

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVQ6	P2B10_ARATH	No assigned EC number	0.4329	0.9433	0.9191	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam14299	154	pfam14299, PP2, Phloem protein 2	6e-55
pfam00646	48	pfam00646, F-box, F-box domain	2e-04
pfam12937	47	pfam12937, F-box-like, F-box-like	0.002

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  173 bits (442), Expect = 6e-55
 Identities = 69/162 (42%), Positives = 93/162 (57%), Gaps = 8/162 (4%)

Query: 99  GKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRT 158
           GKKCYM+ AR L I WG  P  W+W  LPESRF EVAEL+   + E+  +I TR+LS  T
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 159 NYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWME 218
            Y+AYLVFK      G+    +  +V V      +++     P +        R DGWME
Sbjct: 61  TYSAYLVFKLADRAYGWDEKPVEFSVSVPDGQKSRQERYVCLPEK--------RGDGWME 112

Query: 219 IEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEFRPK 260
           IE+GEFFN+ G+ G +  S+ + D    + GL++ GIE RPK
Sbjct: 113 IEVGEFFNEGGEDGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 7  LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFL 48
          LP + +  I+S   P+D  RL++VS  ++S  DS+ +W+K L
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 7  LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKF 47
          LP E +  I S   PRD  RLA+V   ++  A    +W + 
Sbjct: 4  LPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRL 44

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.78
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.43
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.37
PF06881	109	Elongin_A: RNA polymerase II transcription factor	95.65
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.01
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	90.95
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	86.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	85.45
KOG3926	332	consensus F-box proteins [Amino acid transport and	84.54
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	83.56

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=3.8e-66  Score=436.84  Aligned_cols=153  Identities=46%  Similarity=0.860  Sum_probs=145.3

Q ss_pred             CCeeEEeeccceeeeeCCCCCceeEeecCCCCcccceeEeeeeEEEEEEEEeccccCCCCeEEEEEEEEeCcccCCCCcc
Q 045187           99 GKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRST  178 (265)
Q Consensus        99 G~kCymLsAR~L~ItWgdd~~YW~W~~~~~Srf~eVAeL~~VcWLeI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~  178 (265)
                      |+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceEEEEEEcCceee-eeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCCCcEEEEEEEEEeCCcccceEEEEEEEE
Q 045187          179 QLTSAVYVEGINDK-KRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEF  257 (265)
Q Consensus       179 pv~~~v~~~~g~~~-~~~~v~l~~~~~~~~~p~~r~dgW~EielGeF~~~~~~~~ev~fsl~e~~~~~wK~GLiv~GIeI  257 (265)
                      ||+++|++++++.. +.+.+++         |++|+|||||||+|||+++++++++|+|+|+|+++++||+||||+||||
T Consensus        81 pv~~~v~~~~~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieI  151 (154)
T PF14299_consen   81 PVEFSVKVPDGEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEI  151 (154)
T ss_pred             CEEEEEEeCCCccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEE
Confidence            99999999987652 4456666         6689999999999999999888999999999999999999999999999


Q ss_pred             Eec
Q 045187          258 RPK  260 (265)
Q Consensus       258 RPk  260 (265)
                      |||
T Consensus       152 RPK  154 (154)
T PF14299_consen  152 RPK  154 (154)
T ss_pred             ecC
Confidence            998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.78  E-value=6.5e-09  Score=70.43  Aligned_cols=45  Identities=29%  Similarity=0.547  Sum_probs=40.3

Q ss_pred             cCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccC
Q 045187            4 TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFL   48 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~fl   48 (265)
                      +++||+|++.+|+++++|.|.+++++||+.|+.++.++.+|.++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            468999999999999999999999999999999999999998764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.43  E-value=9.1e-08  Score=64.55  Aligned_cols=44  Identities=36%  Similarity=0.619  Sum_probs=38.9

Q ss_pred             cCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhccc
Q 045187            4 TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKF   47 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~f   47 (265)
                      +.+||++++.+|++++++.|.++++.||+.|+.+++++.+|.++
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            56899999999999999999999999999999999999999865

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.37  E-value=4.3e-07  Score=58.66  Aligned_cols=40  Identities=40%  Similarity=0.556  Sum_probs=38.6

Q ss_pred             CcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcc
Q 045187            7 LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEK   46 (265)
Q Consensus         7 Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~   46 (265)
                      ||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=95.65  E-value=0.012  Score=46.90  Aligned_cols=73  Identities=18%  Similarity=0.297  Sum_probs=58.8

Q ss_pred             CccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCccccccccccCCcccccCCCCHHHHHHhhcC
Q 045187            2 DITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCH   80 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~~il~~~~~~~~~~~~~skKely~~Lc~   80 (265)
                      ..++++|.++|.-||...+|....++..-|+.+  +-++|.+|.+|+-.||..-.....+ .   +..+-+++|..+.+
T Consensus         2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~~-~---~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQKP-K---EPESWRELYEKLKK   74 (109)
T ss_pred             CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcccc-c---ccchHHHHHHHHHH
Confidence            568899999999999999999999999998765  5679999999999999852222211 1   34689999998764

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.01  E-value=0.024  Score=53.48  Aligned_cols=81  Identities=15%  Similarity=0.164  Sum_probs=57.7

Q ss_pred             cCCCcHHHHHHHHhcCC-----hHHHHHHhhccHHHHhhhcchhhhcccCCccccccccccCCcc--cccCCCCHHHHHH
Q 045187            4 TNVLPAECISHIISLTT-----PRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSS--FLITSLSKKDLYF   76 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~-----P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~~il~~~~~~~--~~~~~~skKely~   76 (265)
                      +..||++.+..|+...=     -++.-++|+||+.|+-+|..|.+|..+|=.-|..-+-...+-.  +. -..|-+++|.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sk-y~~SWR~Mfl  185 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSK-YYTSWREMFL  185 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhH-HHhHHHHHHh
Confidence            57899999999987654     4999999999999999999999999988766653332222110  01 2357788887


Q ss_pred             hhcCCCeeecC
Q 045187           77 HLCHHPIFINN   87 (265)
Q Consensus        77 ~Lc~~pvlld~   87 (265)
                      .--  -|.+||
T Consensus       186 ~Rp--RvrFdG  194 (366)
T KOG2997|consen  186 ERP--RVRFDG  194 (366)
T ss_pred             hCc--ceeecc
Confidence            532  355555

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=90.95  E-value=0.21  Score=48.30  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=36.6

Q ss_pred             CCccCCCcHHHHHHHHhcC-ChHHHHHHhhccHHHHhhhcch
Q 045187            1 MDITNVLPAECISHIISLT-TPRDACRLAVVSPAFKSAADSV   41 (265)
Q Consensus         1 ~~~~~~Lpe~ci~~il~~~-~P~d~~r~a~vs~~fr~aa~sD   41 (265)
                      |..-.+||+|.+..|...+ +..|..|+++||+++|+|+...
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence            4556789999999999998 7999999999999999998863

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=86.87  E-value=0.18  Score=48.03  Aligned_cols=50  Identities=20%  Similarity=0.235  Sum_probs=45.9

Q ss_pred             ccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCccc
Q 045187            3 ITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDY   52 (265)
Q Consensus         3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy   52 (265)
                      .++.+|.+.+..+++++.++++.+.|+||+.++..++-+.+|++++-.++
T Consensus         7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l   56 (386)
T KOG4408|consen    7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL   56 (386)
T ss_pred             chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence            46789999999999999999999999999999999999999999985443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=85.45  E-value=0.73  Score=43.88  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=40.9

Q ss_pred             cCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcc
Q 045187            4 TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEK   46 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~   46 (265)
                      ++.||++.+..|.+.+--.|.-+++.||+.|...|....+|..
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~  140 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT  140 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence            5789999999999999999999999999999999999999954

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=84.54  E-value=0.68  Score=43.11  Aligned_cols=74  Identities=23%  Similarity=0.337  Sum_probs=53.7

Q ss_pred             cCCCcHHHHHHHHhcCC-hHHHHHHhhccHHHHhhhcchhhhcccCCccccc--cccccCCcccccCCCCHHHHHHhhc
Q 045187            4 TNVLPAECISHIISLTT-PRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKL--IISNSVSSSFLITSLSKKDLYFHLC   79 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~-P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~~--il~~~~~~~~~~~~~skKely~~Lc   79 (265)
                      |-|||++|+..||..++ -+|.--+|.|-.++....+.+.+|.+.+--.|.+  |-....... . ...--|++|+.|-
T Consensus       202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k-~-~q~dWkqmyf~L~  278 (332)
T KOG3926|consen  202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSK-K-GQKDWKQMYFQLR  278 (332)
T ss_pred             cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcc-c-cchhHHHHHHHHH
Confidence            66999999999998865 8999999999999999999999999887755441  222111000 0 1123578888774

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=83.56  E-value=0.74  Score=46.53  Aligned_cols=50  Identities=24%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             cCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCcccc
Q 045187            4 TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYK   53 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~   53 (265)
                      +..||-+..-.|+++++|++.+.+++||+.|+..++.|.+|.+.+.....
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~  157 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG  157 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence            56799999999999999999999999999999999999999876665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	3e-05

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 7  LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYK 53
          LP +   +I+S  +P D C+L   +  +       ++W  FL  D  
Sbjct: 8  LPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.82
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.73
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.13
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.64
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.8
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	93.74
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	91.0

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.82  E-value=3.3e-09  Score=72.41  Aligned_cols=45  Identities=18%  Similarity=0.248  Sum_probs=40.2

Q ss_pred             ccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhccc
Q 045187            3 ITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKF   47 (265)
Q Consensus         3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~f   47 (265)
                      .+++||++++.+|+++++|+|.+++++||+.|+.++.++.+|+.+
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            578999999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.73  E-value=5.3e-09  Score=96.15  Aligned_cols=82  Identities=21%  Similarity=0.344  Sum_probs=64.4

Q ss_pred             CccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCcccc---ccccccCCccc----------ccCC
Q 045187            2 DITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYK---LIISNSVSSSF----------LITS   68 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~---~il~~~~~~~~----------~~~~   68 (265)
                      |.|++||.+++.+|++|++|+|+|++++||+.||.+|+.+.+|+.||-.|++   +|-..+.|...          ...+
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~   82 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF   82 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence            5789999999999999999999999999999999999999999999987744   44443332210          0014


Q ss_pred             CCHHHHHHhhcCCCeee
Q 045187           69 LSKKDLYFHLCHHPIFI   85 (265)
Q Consensus        69 ~skKely~~Lc~~pvll   85 (265)
                      ..++.+|.+=|  |.|+
T Consensus        83 ~~~~~~y~~~~--p~l~   97 (312)
T 3l2o_B           83 FDYMAVYRMCC--PYLI   97 (312)
T ss_dssp             CCHHHHHHHHC--TTCC
T ss_pred             ccHHHHHHhcC--hhhh
Confidence            56899999988  5443

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.13  E-value=1.4e-06  Score=79.83  Aligned_cols=80  Identities=13%  Similarity=0.202  Sum_probs=61.1

Q ss_pred             CccCCCcHHHHHHHHhcCChHHHH-HHhhccHHHHhhhcchhhhcccCCccccccccc-cCCcccccCCCCHHHHHHhhc
Q 045187            2 DITNVLPAECISHIISLTTPRDAC-RLAVVSPAFKSAADSVLVWEKFLPSDYKLIISN-SVSSSFLITSLSKKDLYFHLC   79 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~-r~a~vs~~fr~aa~sD~vW~~flP~dy~~il~~-~~~~~~~~~~~skKely~~Lc   79 (265)
                      ..+..||++.+..||+++.|++.+ |+++|||.||..++++.+|.+.|...  .+... ...+    +..+-|.+|..--
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~~~----~~~~Wk~~y~~~~  122 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSADE----ERDHWQQFYFLSK  122 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC---------CCSCHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--CcccccccCC----CCCChhhhhehee
Confidence            467899999999999999999999 99999999999999999999988765  12211 1111    2356899998743


Q ss_pred             CCCeeecC
Q 045187           80 HHPIFINN   87 (265)
Q Consensus        80 ~~pvlld~   87 (265)
                      ..-+||.|
T Consensus       123 ~gRNLL~N  130 (297)
T 2e31_A          123 RRRNLLRN  130 (297)
T ss_dssp             HCCCCSSC
T ss_pred             cccceeec
Confidence            34566655

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.94  E-value=4.4e-06  Score=76.71  Aligned_cols=48  Identities=23%  Similarity=0.405  Sum_probs=45.0

Q ss_pred             CccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCC
Q 045187            2 DITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLP   49 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP   49 (265)
                      ..++.||++++.+|+++++|+|.|++++||+.|+.+++++.+|++++-
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            457899999999999999999999999999999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.64  E-value=1.5e-05  Score=73.08  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=42.8

Q ss_pred             ccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcc-hhhhcccC
Q 045187            3 ITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADS-VLVWEKFL   48 (265)
Q Consensus         3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~s-D~vW~~fl   48 (265)
                      -+..||++++.+|+++++|+|.|++++||+.|+.++++ +.+|.+++
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35679999999999999999999999999999999987 99999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.63  E-value=1.2e-05  Score=73.75  Aligned_cols=49  Identities=18%  Similarity=0.432  Sum_probs=45.0

Q ss_pred             ccCCCcHH----HHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCcc
Q 045187            3 ITNVLPAE----CISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSD   51 (265)
Q Consensus         3 ~~~~Lpe~----ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~d   51 (265)
                      -+..||++    ++.+|+++++|+|.|++++||+.|+.+++++.+|.+++...
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            35679999    99999999999999999999999999999999999887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.01  E-value=0.00045  Score=61.24  Aligned_cols=46  Identities=17%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             CccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhccc
Q 045187            2 DITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKF   47 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~f   47 (265)
                      ..+++||++++.+|+++++++|.++++.||+.|+.++.+...|..+
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            3578999999999999999999999999999999998777778653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.38  E-value=0.009  Score=56.81  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             CccCCCcHHHHHHHHhcCC-hHHHHHHhhccHHHHhh
Q 045187            2 DITNVLPAECISHIISLTT-PRDACRLAVVSPAFKSA   37 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~-P~d~~r~a~vs~~fr~a   37 (265)
                      ..+++||++++.+|+++++ ++|++++|+||+.|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4678999999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.80  E-value=0.032  Score=53.02  Aligned_cols=33  Identities=12%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             CCcHHHHHHHHhcC-ChHHHHHHhhccHHHHhhh
Q 045187            6 VLPAECISHIISLT-TPRDACRLAVVSPAFKSAA   38 (265)
Q Consensus         6 ~Lpe~ci~~il~~~-~P~d~~r~a~vs~~fr~aa   38 (265)
                      +||++++.+|++++ +++|+++++.||+.|+.+.
T Consensus        15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            79999999999999 8999999999999999873

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=93.74  E-value=1.6  Score=35.48  Aligned_cols=96  Identities=9%  Similarity=0.029  Sum_probs=59.2

Q ss_pred             cccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEc--CceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCC
Q 045187          152 RILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVE--GINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNG  229 (265)
Q Consensus       152 ~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~--~g~~~~~~~v~l~~~~~~~~~p~~r~dgW~EielGeF~~~~~  229 (265)
                      ..|.||++|.+..-+|+.+..   ....+.+++...  +|..   +...+..       -....++|.+++-|.|.....
T Consensus        63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~---~y~~i~~-------~~~~~~~W~~L~G~~ft~~~~  129 (160)
T 1dyo_A           63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ---RYDTIDM-------KTVGPNQWVHLYNPQYRIPSD  129 (160)
T ss_dssp             TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE---EEEEEEE-------EEECSSCCEEEEEEEEECCTT
T ss_pred             hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE---EEEEEee-------EEEcCCccEEEECcEEEeCCC
Confidence            478999999999999997742   223444455442  2332   1122211       012358999999889998654


Q ss_pred             CCcEEEEEEEEEeCCcccceEEEEEEEEEecCCCC
Q 045187          230 DGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKMPM  264 (265)
Q Consensus       230 ~~~ev~fsl~e~~~~~wK~GLiv~GIeIRPk~~~~  264 (265)
                      . ..+.+- .|  +..-..=+.|+.|.|.|....|
T Consensus       130 ~-~~~~ly-ve--~~~~~~d~yiDdv~i~~~g~~~  160 (160)
T 1dyo_A          130 A-TDMYVY-VE--TADDTINFYIDEAIGAVAGTVI  160 (160)
T ss_dssp             C-EEEEEE-EE--ESSCCCCEEEEEEEEEETTCCC
T ss_pred             C-CEEEEE-EE--CCCCCccEEEEEEEEEeCcccC
Confidence            2 234332 23  2334556899999999987654

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=91.00  E-value=0.096  Score=40.21  Aligned_cols=65  Identities=15%  Similarity=0.291  Sum_probs=40.2

Q ss_pred             CCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCccccccccccCCcccccCCCCHHHHHHhhcC
Q 045187            6 VLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCH   80 (265)
Q Consensus         6 ~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~~il~~~~~~~~~~~~~skKely~~Lc~   80 (265)
                      ..|-+.+.-||...+|....++-.-|..+  .-++|-+|.+++-.||..--     +.   ...|-+++|.+|.+
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~---e~esWRelY~rl~~   76 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PE---EYESWREMYLRLQD   76 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CC---SSSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CC---CCCCHHHHHHHHHH
Confidence            36888899999999999999999999965  67899999999999998332     11   45799999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	4e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.001

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 1  MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDY 52
           D  ++LP E   +++S   P+D  + A     ++  A+  L+W +    + 
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 67

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 4e-04
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 7  LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVW 44
          LP E +  I S     +  +++ V   +   A    +W
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 1  MDITNVLPAECISHIISLTTPRDACRLAVVSPAFKS-AADSVLVWEKFLPSDYKLIISNS 59
           D+   LP E    I +     D      VS  +      S  +W+K L S+   +    
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE-NFVSPKG 61

Query: 60 VSSSFLITSLSKKDLYFHLCHHPIFINN 87
           +S  L  S     L         F+ N
Sbjct: 62 FNSLNLKLSQKYPKLSQQDRLRLSFLEN 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.92
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.37
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.2
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	95.02
d1guia_	155	Carbohydrate binding module from laminarinase 16A	87.84

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.5e-10  Score=74.44  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=39.9

Q ss_pred             cCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhh
Q 045187            4 TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVW   44 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW   44 (265)
                      ++.||++++.+|+++++|+|.||+++|||.|+.+++++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            57899999999999999999999999999999999999999

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=6e-10  Score=83.63  Aligned_cols=51  Identities=22%  Similarity=0.374  Sum_probs=46.3

Q ss_pred             CccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCccc
Q 045187            2 DITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDY   52 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy   52 (265)
                      +-|..||+|++.+|+++++|+|+|++|+||+.|+.++.+|.+|+..+-.++
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~   67 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG   67 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence            347889999999999999999999999999999999999999988775543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=4.3e-08  Score=73.43  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=40.8

Q ss_pred             ccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcc-hhhhcccC
Q 045187            3 ITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADS-VLVWEKFL   48 (265)
Q Consensus         3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~s-D~vW~~fl   48 (265)
                      -+.+||++++.+|+++++|.|.|++|+||+.|+..+++ ..+|.+.+
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~   51 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   51 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            36789999999999999999999999999999988765 47998753

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.6e-07  Score=72.06  Aligned_cols=49  Identities=18%  Similarity=0.417  Sum_probs=43.5

Q ss_pred             cCCCcH----HHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCccc
Q 045187            4 TNVLPA----ECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDY   52 (265)
Q Consensus         4 ~~~Lpe----~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy   52 (265)
                      +..||.    +.+..|+++++|.|.|++|+||+.|+..++++.+|.+++-+.+
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~   63 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV   63 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence            456775    9999999999999999999999999999999999998875543

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.02  E-value=0.34  Score=35.86  Aligned_cols=103  Identities=8%  Similarity=0.031  Sum_probs=61.0

Q ss_pred             EEEeccccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEe
Q 045187          147 ARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFN  226 (265)
Q Consensus       147 G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g~~~~~~~v~l~~~~~~~~~p~~r~dgW~EielGeF~~  226 (265)
                      -.+....|.||++|.+.+-+|+.+...+   ..+.+.+...++.. ......+..       .....++|.++..++|..
T Consensus        55 ~~~~~~~l~~g~tY~~s~~vk~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~W~~~~~~~~~~  123 (157)
T d1h6ya_          55 RALNPRTFVPGNTYCFSVVASFIEGASS---TTFCMKLQYVDGSG-TQRYDTIDM-------KTVGPNQWVHLYNPQYRI  123 (157)
T ss_dssp             EECCTTTSCTTCEEEEEEEEECCSSSSC---EEEEEEEEEECTTS-CEEEEEEEE-------EEECTTCCEEEEEEEEEC
T ss_pred             EEecceeccCCCEEEEEEEEEeCCCCcc---eeEEEEEEEecCCC-ceeEEEeeE-------EEeccCccEEEEEEEEEC
Confidence            3344456899999999999998874433   33444444433221 111111111       122357899998889877


Q ss_pred             cCCCCcEEEEEEEEEeCCcccceEEEEEEEEEecCCCC
Q 045187          227 KNGDGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKMPM  264 (265)
Q Consensus       227 ~~~~~~ev~fsl~e~~~~~wK~GLiv~GIeIRPk~~~~  264 (265)
                      ..+. ..+.|-+ +  +..-..-+.|+-+.+.|+...|
T Consensus       124 ~~~~-~~~~l~~-~--~~~~~~~~yiDDv~~~~~~~~~  157 (157)
T d1h6ya_         124 PSDA-TDMYVYV-A--TADDTINFYIDEAIGAVAGTVI  157 (157)
T ss_dssp             CTTC-EEEEEEE-E--ESSCCCCEEEEEEEEEETTCCC
T ss_pred             CCCC-cEEEEEE-E--CCCCCceEEEeeEEEecccccC
Confidence            5543 3455432 2  2222233999999999998765

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

Probab=87.84  E-value=3.8  Score=29.94  Aligned_cols=88  Identities=9%  Similarity=0.115  Sum_probs=52.3

Q ss_pred             ccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCCCc
Q 045187          153 ILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGG  232 (265)
Q Consensus       153 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g~~~~~~~v~l~~~~~~~~~p~~r~dgW~EielGeF~~~~~~~~  232 (265)
                      .|.||.+|.+.|.+|-...      .++.+.+...++....-....+           .-...|.++++ +|......+.
T Consensus        68 ~l~~g~~Y~lSf~~k~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------~~t~~W~~~s~-~f~~~~~~~~  129 (155)
T d1guia_          68 GLYRGKTYTISFKAKADTP------RPINVKILQNHDPWTNYFAQTV-----------NLTADWQTFTF-TYTHPDDADE  129 (155)
T ss_dssp             ECCTTCEEEEEEEEEESSC------EEEEEEEECSSTTCCEEEEEEE-----------EECSSCEEEEE-EEECCTTSCS
T ss_pred             EecCCCEEEEEEEEEeCCC------CcEEEEEEEcCCCCeEEeeeEE-----------eeccccEEEEE-EEEecCCCCc
Confidence            4779999999999886542      3444444433321101111111           12468999985 7877664444


Q ss_pred             EEEEEEEEEeCCcccceEEEEEEEEEec
Q 045187          233 TLLCSLFDFDRFGTRHGLVIQGIEFRPK  260 (265)
Q Consensus       233 ev~fsl~e~~~~~wK~GLiv~GIeIRPk  260 (265)
                      .+.+.+. . ++.-.+.+.|+-|.|.||
T Consensus       130 ~~~l~~~-~-~~~~~~~~~iDnV~l~~~  155 (155)
T d1guia_         130 VVQISFE-L-GEGTATTIYFDDVTVSPQ  155 (155)
T ss_dssp             EEEEEEE-C-CSSCCCEEEEEEEEEEEC
T ss_pred             cEEEEEE-E-CCCCCcEEEEEEEEEEEC
Confidence            5555443 2 333456799999999997