Citrus Sinensis ID: 045196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MGKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEEKQKCFEAAASDSVFELGMETN
Secondary Structure (PSIPRED)
cccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHccEEccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHcHcHHHHHHcccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHEEEHHHHHHHHHHHEEEEEEEcHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHcccccccccccHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgkklptnltlanpsaaktgsnnsdnkneslWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFsnnnnnkgkgggswpqLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLslwlpetknaplyETLKQQGEEEEKQKCFEAAASDSVFELGMETN
Flexible Loop (DISEMBL)
mgkklptnltlanpsaaktgsnnsdnkneSLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEEKQKCFEAAASDSVFELGMETN
Low Complexity Region (SEG)
MGKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSnnnnnkgkgggSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLkqqgeeeekqkcfeaaaSDSVFELGMETN
Disordered region (IsUnstruct)
******************************LWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLF*************WPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLY********************************
Disordered Region (DISOPRED)
*GKKLPT**********************SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLK****************************
Disordered Region (DISEMBL)
MGKKLPTNLTLAN**************NESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQ*********CFEAAASDSVFELGMETN
Disordered Region (DISPRO)
*****PTNLTLANP*******NNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEE**********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEEKQKCFEAAASDSVFELGMETN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9CAT6	539	Organic cation/carnitine	yes	no	0.901	0.426	0.600	2e-77
O64515	527	Organic cation/carnitine	no	no	0.780	0.377	0.394	2e-33
Q9SAK7	515	Organic cation/carnitine	no	no	0.835	0.413	0.372	5e-33
Q9SA38	518	Organic cation/carnitine	no	no	0.745	0.366	0.402	3e-31
Q9SA36	521	Organic cation/carnitine	no	no	0.756	0.370	0.355	1e-28
Q9LHQ6	526	Organic cation/carnitine	no	no	0.858	0.416	0.340	2e-25
Q7ZX53	487	Solute carrier family 22	N/A	no	0.725	0.379	0.357	5e-22
Q28ES4	487	Solute carrier family 22	yes	no	0.725	0.379	0.341	7e-22
Q9WTN6	564	Solute carrier family 22	yes	no	0.862	0.390	0.282	2e-19
O76082	557	Solute carrier family 22	yes	no	0.878	0.402	0.268	2e-19

>sp|Q9CAT6|OCT1_ARATH Organic cation/carnitine transporter 1 OS=Arabidopsis thaliana GN=OCT1 PE=2 SV=1

 Score =  289 bits (739), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/233 (60%), Positives = 173/233 (74%), Gaps = 3/233 (1%)

Query: 2   GKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN 61
           GK+LP +L+L +P   +   ++  + +E  W TKWA KR+IMVM AGFG GFVYYGIQLN
Sbjct: 301 GKQLPADLSLVDPIPER---DDQTSSSEKFWKTKWAVKRIIMVMMAGFGSGFVYYGIQLN 357

Query: 62  VGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNN 121
             NLNFNLY +VA+NALME PAV IG+ LL   NRR L S S+Y+AG A +LC + S + 
Sbjct: 358 AENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSNSSYLAGFACLLCAVLSIHR 417

Query: 122 NNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV 181
             +      W QL +E VGFMA+STA+DV+Y+YCVELFPTNVRN AVS LRQA MLGAS 
Sbjct: 418 VIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLLRQAFMLGASA 477

Query: 182 SPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEE 234
           +PLLV +GR S  +SF+VFG  S+ SG++SLWL ET+NAPLYETL QQG+ EE
Sbjct: 478 APLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPLYETLAQQGKAEE 530

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Regulates lateral root development.
Arabidopsis thaliana (taxid: 3702)

>sp|O64515|OCT2_ARATH Organic cation/carnitine transporter 2 OS=Arabidopsis thaliana GN=OCT2 PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 35  KWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFT 94
           +WA KRL  VM   FG+G VYYG+ L + NL+FN+Y S A NALM++PA +I   L+   
Sbjct: 321 RWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAAFNALMDLPANLITLFLVDKL 380

Query: 95  NRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY 154
           +RR  L     + G +S+L  +F+ +N   G  G    QL +E + + +A +AF++  IY
Sbjct: 381 SRRNALIGFTALGGVSSVL--IFALHNMRIGNHGAL--QLALELISYFSACSAFNMEMIY 436

Query: 155 CVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWL 214
            +ELFPT VRN A++  RQAL+LG   SP++V  GR +   SF +FG      G+ ++ L
Sbjct: 437 TIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFGLFGLAIGLLGLFAVGL 496

Query: 215 PETKNAPLYETLKQQGEEEEKQK 237
           PET+ + L +T+ ++  ++ + K
Sbjct: 497 PETRGSDLCDTMDEEECKDRRSK 519

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK7|OCT5_ARATH Organic cation/carnitine transporter 5 OS=Arabidopsis thaliana GN=OCT5 PE=2 SV=1

 Score =  141 bits (355), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 123/220 (55%), Gaps = 7/220 (3%)

Query: 18  KTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNA 77
           +T    S    + L+  KWA +R+ +VM   FG+G  YYG+ L V ++  N+Y S ALNA
Sbjct: 298 ETLEQTSSYSIKDLFIIKWAFRRVTLVMIIMFGLGMSYYGVPLAVRDIKVNIYMSEALNA 357

Query: 78  LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE 137
           ++E+P  V+  +LL   +RR  +  +  + G++ +LC + S     K           +E
Sbjct: 358 MVELPTFVVTPILLEQFSRRSSVLVNCLIGGASGVLCFVMSLYGRTK-------IAFALE 410

Query: 138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSF 197
              F  A   F++M IY VELFPT VRN A   LRQAL++G +  PL+  +GR  PSLSF
Sbjct: 411 LGSFFCARIGFNLMAIYLVELFPTCVRNSATMMLRQALVVGGACCPLIASLGRNVPSLSF 470

Query: 198 LVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEEKQK 237
            VFG      G+ +L LPETK   L +T+++Q + ++  K
Sbjct: 471 AVFGFAMSGLGLFALLLPETKGLSLCDTMEEQEQRDQALK 510

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA38|OCT3_ARATH Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 11/201 (5%)

Query: 35  KWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFT 94
            W+ +RL+  M  GFG+G VYYG+ L + NLNFNLY  V  NAL E PA +I    +   
Sbjct: 320 SWSFRRLLAAMVVGFGIGMVYYGMPLALTNLNFNLYLGVVFNALSEFPAFLITFFFIDKI 379

Query: 95  NRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY 154
           NRR  L     ++G +S L  +        G+  GS  Q+++E V F +A TAF++  IY
Sbjct: 380 NRRDALIGFTALSGISSALIAVL-------GQQLGS-LQIVLELVSFFSACTAFNMTLIY 431

Query: 155 CVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWL 214
            +E+FPT VRN A+S +RQAL+ G   SP++V  GR +   S+ +FG +    G+    L
Sbjct: 432 TIEMFPTCVRNSAISMVRQALVFGGVFSPVMVAAGRENQFWSYGLFGLIIGLCGLFVFGL 491

Query: 215 PETKNAPLYETLKQQGEEEEK 235
           PET+ + L +T+    EEE K
Sbjct: 492 PETRGSVLCDTMD---EEEYK 509

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA36|OCT6_ARATH Organic cation/carnitine transporter 6 OS=Arabidopsis thaliana GN=OCT6 PE=2 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 114/200 (57%), Gaps = 7/200 (3%)

Query: 35  KWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFT 94
           KWA +R+++VM   FG+G  YYG+ L   +++ N+Y S  LNAL+E+P  VI  +LL   
Sbjct: 321 KWAFRRILVVMIIMFGLGISYYGVPLAARDIDVNIYLSETLNALVELPTFVITPILLERF 380

Query: 95  NRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY 154
           NRR  +  +  + G++ +LC + S         G +      E   F  A   F++M ++
Sbjct: 381 NRRSSVLVNTLLGGASGVLCFVLSIL-------GKTEIAFAFELGTFFCARIGFNLMAVF 433

Query: 155 CVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWL 214
            VE+FPT VR+ A    RQAL++G +  PL+  +GR  PS+SF +FG      G+  L L
Sbjct: 434 MVEMFPTCVRSSATMMFRQALVVGGACCPLIASIGRYIPSVSFAIFGIAMSGLGMFVLIL 493

Query: 215 PETKNAPLYETLKQQGEEEE 234
           PETK   L +++++Q + ++
Sbjct: 494 PETKGLSLCDSMEEQEKRDQ 513

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHQ6|OCT4_ARATH Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 127/244 (52%), Gaps = 25/244 (10%)

Query: 2   GKKLPTNLTLANPSAAKTGSNNSDNKNESLWGT-------KWAAKRLIMVMTAGFGVGFV 54
           G+ +P  +TLA     +   NN+  +N ++ G+            RL++ +   F V  V
Sbjct: 288 GRHIPAGVTLALDDDVE---NNNGERNTAVEGSLKDVILSPLMRMRLVISVAISFTVSIV 344

Query: 55  YYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILC 114
           YYG+ LNVGNL  NLY +V +NA+ E+PA  I  VLL    R+ L   + +    + + C
Sbjct: 345 YYGLSLNVGNLKTNLYLNVFVNAVSEMPAFAITAVLLDKYGRKPLSIGTQWF---SCVFC 401

Query: 115 TL-FSNNNNNKGKGGGSWPQL-IIEGV-GFMAASTAFDVMYIYCVELFPTNVRNIAVSFL 171
            + FS        G G W  + ++ GV G    +  +++++IY  ELFPT VRN A+   
Sbjct: 402 LVGFSV------WGAGPWKSVRMVSGVLGIFGMAGTYNLLFIYIAELFPTVVRNAALGCA 455

Query: 172 RQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGE 231
            QA  +GA ++P +VV+G     L F VF    +  G L+ +LPET N PLY+T+    E
Sbjct: 456 TQAAQMGAILAPFVVVLGE---ELPFGVFAVCGLVGGGLAFYLPETLNKPLYDTMFGMHE 512

Query: 232 EEEK 235
            E +
Sbjct: 513 AESE 516

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7ZX53|S22FL_XENLA Solute carrier family 22 member 15-like OS=Xenopus laevis GN=slc22a15b PE=2 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 11/196 (5%)

Query: 35  KWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLL--S 92
           +W   R I++M   +    VYYG+ LN G L  NLY +VAL  L+E+PA  +    +  S
Sbjct: 282 RW---RTILLMYIWYVCSLVYYGLTLNAGELKGNLYLNVALYGLVEVPAFPLCLYFIEKS 338

Query: 93  FTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY 152
           ++ RR   +     AG A I  T+F    N     G      ++   G ++ S AF+V+Y
Sbjct: 339 WSGRRRATAGFLVFAGFACIF-TIFVPETN-----GDFINPTVLALFGKLSVSAAFNVVY 392

Query: 153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSL 212
           IY  EL+PT VRN  +     A   G  +SP +  +   +PS+ F+ FG   I +G+LSL
Sbjct: 393 IYTSELYPTVVRNAGLGVCAMACRFGGILSPFIPAMKSFNPSMPFVAFGISGISAGILSL 452

Query: 213 WLPETKNAPLYETLKQ 228
            LPET+N P+ ET++ 
Sbjct: 453 LLPETRNKPIAETIED 468

Probably transports organic cations.

Xenopus laevis (taxid: 8355)

>sp|Q28ES4|S22FL_XENTR Solute carrier family 22 member 15-like OS=Xenopus tropicalis GN=slc22a15b PE=2 SV=1

 Score =  104 bits (259), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 11/196 (5%)

Query: 35  KWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLL--S 92
           +W   R I++M   +    VYYG+ LN G L  NLY +VAL  L+E+PA  +    +  S
Sbjct: 282 RW---RTILLMYIWYVCSLVYYGLTLNAGELKGNLYLNVALYGLVEVPAFPLCLYFIEKS 338

Query: 93  FTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY 152
           ++ RR   +     AG A I        N      G      ++   G ++ S AF+V+Y
Sbjct: 339 WSGRRKATAGFLGFAGFACIFTIFLPETN------GDLLNPTVLALFGKLSVSAAFNVVY 392

Query: 153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSL 212
           IY  EL+PT VRN  +     A   G  +SP +  +  ++PS+ F+ FG   I +G+LSL
Sbjct: 393 IYTSELYPTVVRNAGLGVCAMACRFGGILSPFIPTMKSLNPSMPFVAFGISGISAGILSL 452

Query: 213 WLPETKNAPLYETLKQ 228
            LPET+N P+ E+++ 
Sbjct: 453 LLPETRNKPIAESIED 468

Probably transports organic cations.

Xenopus tropicalis (taxid: 8364)

>sp|Q9WTN6|S22AL_MOUSE Solute carrier family 22 member 21 OS=Mus musculus GN=Slc22a21 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 14/234 (5%)

Query: 10  TLANPSAAKTGSNNSDNKNES-----LWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN 64
           T+ +PS      ++S  K +S     L  T       IM +     +   Y+G+ L+  N
Sbjct: 311 TIFDPSETNKLQDDSSKKPQSHHIYDLVRTPNIRILTIMSIILWLTISVGYFGLSLDTPN 370

Query: 65  LNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNK 124
           LN N+Y +  L A +E+PA V+  +LL   +RR  ++ S ++ GS  +L  L  ++ +  
Sbjct: 371 LNGNIYVNCFLLAAVEVPAYVLAWLLLQHVSRRYSMAGSLFLGGSVLLLVQLVPSDLH-- 428

Query: 125 GKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL 184
                 +    +  VG    ++A+ ++Y+Y  EL+PT VRN+ V     A  LG+ +SP 
Sbjct: 429 ------YLSTTLVMVGKFGITSAYSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPY 482

Query: 185 LVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQ-QGEEEEKQK 237
            V +G     L +++ G+L+I + +++L+ PE+    L ET+ + Q  ++ KQ+
Sbjct: 483 FVYLGAYDRRLPYILMGSLTILTAIITLFFPESSGVSLPETIDEMQKVKKLKQR 536

Sodium-ion independent, medium affinity carnitine transporter. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 746.

Mus musculus (taxid: 10090)

>sp|O76082|S22A5_HUMAN Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 22/246 (8%)

Query: 10  TLANPSAAKTGSNNSDNKNESL-----WGTKWAAKRLIMV-MTAGFGVGFVYYGIQLNVG 63
           T+ +PS  +  S+     +  L     W  +      IM+ MT   G    Y+G+ L+  
Sbjct: 311 TIFDPSELQDLSSKKQQSHNILDLLRTWNIRMVTIMSIMLWMTISVG----YFGLSLDTP 366

Query: 64  NLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNN 123
           NL+ +++ +  L+A++E+PA V+  +LL +  RR  ++ + ++ GS  +   L   +   
Sbjct: 367 NLHGDIFVNCFLSAMVEVPAYVLAWLLLQYLPRRYSMATALFLGGSVLLFMQLVPPDLYY 426

Query: 124 KGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSP 183
                      ++  VG    + AF ++Y+Y  EL+PT VRN+ V     A  LG+ +SP
Sbjct: 427 LAT--------VLVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSP 478

Query: 184 LLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQ----QGEEEEKQKCF 239
             V +G     L +++ G+L+I + +L+L+LPE+   PL +T+ Q    +G +  K    
Sbjct: 479 YFVYLGAYDRFLPYILMGSLTILTAILTLFLPESFGTPLPDTIDQMLRVKGMKHRKTPSH 538

Query: 240 EAAASD 245
                D
Sbjct: 539 TRMLKD 544

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
29365516	547	putative organic cation transport protei	0.964	0.449	0.684	2e-92
356560049	540	PREDICTED: solute carrier family 22 memb	0.964	0.455	0.681	4e-92
356531062	543	PREDICTED: solute carrier family 22 memb	0.949	0.445	0.664	1e-88
224125700	508	predicted protein [Populus trichocarpa]	0.913	0.458	0.679	3e-87
224120460	546	predicted protein [Populus trichocarpa]	0.921	0.430	0.699	1e-83
225462640	527	PREDICTED: solute carrier family 22 memb	0.960	0.464	0.670	6e-79
297839191	528	sugar transporter family protein [Arabid	0.901	0.435	0.605	5e-76
21618320	328	unknown [Arabidopsis thaliana]	0.901	0.701	0.600	9e-76
30698926	539	organic cation/carnitine transporter1 [A	0.901	0.426	0.600	1e-75
361067955	155	Pinus taeda anonymous locus 2_5744_01 ge	0.596	0.980	0.622	4e-46

>gi|29365516|gb|AAO83155.1|AF402773_1 putative organic cation transport protein [Phaseolus vulgaris]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 178/260 (68%), Positives = 199/260 (76%), Gaps = 14/260 (5%)

Query: 3   KKLPTNLTLANPSAAKT--------GSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFV 54
           +KLPTNLTL NPS +          G   + N  E+LW TKWAA R++ VM AGFGVGFV
Sbjct: 290 QKLPTNLTLTNPSGSSNVAPCTTSEGGERTPNNKENLWTTKWAAIRMVTVMLAGFGVGFV 349

Query: 55  YYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILC 114
           YYG+QLNV NLNFNLY SVALNALMEIPAVVIGT LL FTNRRLLLS S+Y+A  +SILC
Sbjct: 350 YYGVQLNVENLNFNLYVSVALNALMEIPAVVIGTFLLGFTNRRLLLSVSSYIAAVSSILC 409

Query: 115 TLFSNNNNN---KGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFL 171
           T FS+           GGSW QLIIE +GFM AST FD++YIYCVELFPTNVRN AVS L
Sbjct: 410 TFFSHRGKTSKVHSNHGGSWAQLIIEAIGFMGASTTFDILYIYCVELFPTNVRNFAVSML 469

Query: 172 RQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGE 231
           RQA+MLGASV+PLLVV+GR+SPSLSF VFGA SI SGVLSLWLPET+NAPLYETLKQQ E
Sbjct: 470 RQAIMLGASVAPLLVVLGRLSPSLSFFVFGAFSISSGVLSLWLPETRNAPLYETLKQQ-E 528

Query: 232 EEEKQKCFEAAASDSVFELG 251
           EEEK      + +D   ELG
Sbjct: 529 EEEKHNW--VSHNDCALELG 546

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560049|ref|XP_003548308.1| PREDICTED: solute carrier family 22 member 3-like isoform 1 [Glycine max] gi|356560051|ref|XP_003548309.1| PREDICTED: solute carrier family 22 member 3-like isoform 2 [Glycine max]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/254 (68%), Positives = 200/254 (78%), Gaps = 8/254 (3%)

Query: 3   KKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNV 62
           KKLP NLTL NP  +     + +N  E+LW TKWAA R++ VM AGFGVGFVYYG+QLNV
Sbjct: 289 KKLPNNLTLVNPCGSSCDETSPNNNKENLWTTKWAAIRMVTVMLAGFGVGFVYYGVQLNV 348

Query: 63  GNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNN- 121
            NLNFNLY SVA+NALMEIPAVVIGT LL FTNRRLLLS S+Y+A  +SILCT FS+   
Sbjct: 349 ENLNFNLYVSVAINALMEIPAVVIGTFLLGFTNRRLLLSVSSYIAAVSSILCTFFSHKGG 408

Query: 122 ----NNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML 177
               +N    GG+W QLIIE +GFM ASTAFD++YIYCVELFPTNVRN AVS LRQA+ML
Sbjct: 409 TSKVHNNNSYGGNWGQLIIEAIGFMGASTAFDILYIYCVELFPTNVRNFAVSMLRQAIML 468

Query: 178 GASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEEKQK 237
           GASV+PLLVV+GR+SPSLSFLVFG  +I SGVLS+WLPET+NAPLYETLKQQ EEEEK  
Sbjct: 469 GASVAPLLVVLGRLSPSLSFLVFGVFAISSGVLSIWLPETRNAPLYETLKQQ-EEEEKHS 527

Query: 238 CFEAAASDSVFELG 251
               + +D   E+G
Sbjct: 528 WM--SQNDCALEMG 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531062|ref|XP_003534097.1| PREDICTED: solute carrier family 22 member 3-like [Glycine max]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 172/259 (66%), Positives = 203/259 (78%), Gaps = 17/259 (6%)

Query: 3   KKLPTNLTLANPSAAKTGSNNS---DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQ 59
           KKLP NL+L NP  ++ G ++    +N  E+LW TKWAA R++ VM +GFGVGFVYYG+Q
Sbjct: 291 KKLPDNLSLVNPCGSQNGESDETSPNNNKENLWTTKWAAIRMVTVMLSGFGVGFVYYGVQ 350

Query: 60  LNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSN 119
           LNV NLNFNLY SVA+NALMEIPAVVIGT LL FTNRRLLLS S+Y+A  +SILCT  S+
Sbjct: 351 LNVENLNFNLYVSVAINALMEIPAVVIGTFLLGFTNRRLLLSMSSYIAAVSSILCTFLSH 410

Query: 120 -------NNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLR 172
                  +NNN G    +W QLIIE +GFM ASTAFD++YIYCVELFPTNVRN AVS LR
Sbjct: 411 KGSTSKVHNNNSG----NWGQLIIEAIGFMGASTAFDILYIYCVELFPTNVRNFAVSMLR 466

Query: 173 QALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEE 232
           QALMLGASV+PLLVV+GR+SPS+SFLVFG L+I SGVLS+ LPET+NAPLYETLKQQ EE
Sbjct: 467 QALMLGASVAPLLVVLGRLSPSISFLVFGVLAISSGVLSICLPETRNAPLYETLKQQ-EE 525

Query: 233 EEKQKCFEAAASDSVFELG 251
           EEK      + +D   E+G
Sbjct: 526 EEKHNW--VSHNDCALEMG 542

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125700|ref|XP_002329696.1| predicted protein [Populus trichocarpa] gi|222870604|gb|EEF07735.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/240 (67%), Positives = 190/240 (79%), Gaps = 7/240 (2%)

Query: 2   GKKLPTNLTLANPSAAKTGSNNS----DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYG 57
           GK LP NL+L NPS  K G  N         ESLW TKWAAKR+I VM AGFGVGFVYYG
Sbjct: 269 GKTLPENLSLLNPSEPKEGGENEALTKTCTKESLWRTKWAAKRMITVMIAGFGVGFVYYG 328

Query: 58  IQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLF 117
           +QLNV NLNFNLYFSV +NALMEIPA+V GT+LL  T+RRLL S SA++AG + +LC +F
Sbjct: 329 VQLNVENLNFNLYFSVGINALMEIPAIVFGTILLGLTSRRLLFSLSAFLAGISCLLCIIF 388

Query: 118 SNNNNNKG---KGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQA 174
           ++  + K       GSW QLIIEG+GFMAAS AFDV+YIYCVELFPTNVRN A+S  R +
Sbjct: 389 AHGKHVKKAEKSSAGSWAQLIIEGIGFMAASIAFDVLYIYCVELFPTNVRNFALSQSRLS 448

Query: 175 LMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEE 234
           LMLGAS++PLLV  GR+SPSLSFL+FG LSIFSGV+SLWLPETKNAPLY++LKQQ EEE+
Sbjct: 449 LMLGASIAPLLVAAGRLSPSLSFLIFGILSIFSGVVSLWLPETKNAPLYDSLKQQEEEEK 508

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120460|ref|XP_002318335.1| predicted protein [Populus trichocarpa] gi|222859008|gb|EEE96555.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/243 (69%), Positives = 194/243 (79%), Gaps = 8/243 (3%)

Query: 2   GKKLPTNLTLANPSA-AKTGSNNSDNKN---ESLWGTKWAAKRLIMVMTAGFGVGFVYYG 57
           GK LP NL LANPSA  + G N +  KN   ESLW TKWAAKR+I VM AGFGVGFVYYG
Sbjct: 297 GKTLPENLCLANPSAPGEGGENEALTKNCTEESLWRTKWAAKRMITVMIAGFGVGFVYYG 356

Query: 58  IQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLF 117
           +QLN+ NLNFNLYFSV LNALME+PAVVIGT+LL  T RRLL S SA++AG + +LC LF
Sbjct: 357 VQLNIENLNFNLYFSVGLNALMEVPAVVIGTILLGLTGRRLLFSLSAFLAGISCLLCILF 416

Query: 118 SNNNNNKG---KGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQA 174
           ++    K       G+W QL IEG+GFMAAS AFDV+Y+YCVELFPTNVRN AVS  RQA
Sbjct: 417 AHGKRAKNADKSSTGNWAQLAIEGIGFMAASVAFDVLYVYCVELFPTNVRNFAVSQSRQA 476

Query: 175 LMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEE 234
           LMLGAS++PLLV  GR+SPSLSFLVFG LSIFSGV+S WLPET+NAPLY+TLKQQ EE+E
Sbjct: 477 LMLGASIAPLLVAAGRLSPSLSFLVFGILSIFSGVISWWLPETRNAPLYDTLKQQ-EEDE 535

Query: 235 KQK 237
           K K
Sbjct: 536 KNK 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462640|ref|XP_002267247.1| PREDICTED: solute carrier family 22 member 3 [Vitis vinifera] gi|297742779|emb|CBI35459.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (767), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 169/252 (67%), Positives = 199/252 (78%), Gaps = 7/252 (2%)

Query: 2   GKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN 61
           GKKLP NL LANP     G  ++  + +SLW T WAAKR++MVM AGFGVGFVYYG+QLN
Sbjct: 280 GKKLPQNLRLANPGGVDEG--DAIKRKKSLWSTGWAAKRMVMVMLAGFGVGFVYYGVQLN 337

Query: 62  VGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSN-- 119
           V NL+FNLY +VA+NA+MEIPAV+IG+VLLSFTNRRLL S S  +AG A I+C  FS   
Sbjct: 338 VENLSFNLYLTVAINAIMEIPAVLIGSVLLSFTNRRLLFSSSICLAGVACIVCIFFSEAG 397

Query: 120 NNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGA 179
               + +  GSWPQL IE +GFMAASTAFDV+YIYCVELFPTNVRN AVS LRQ+LMLGA
Sbjct: 398 GRRRREESRGSWPQLSIEAIGFMAASTAFDVLYIYCVELFPTNVRNFAVSMLRQSLMLGA 457

Query: 180 SVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEEKQKCF 239
           S++PLLVVVGR+SP+ SFL+FG LS+ SG+L + LPETKNAPLYETL+QQ EEEEK  C 
Sbjct: 458 SIAPLLVVVGRLSPARSFLIFGILSMVSGLLGMSLPETKNAPLYETLEQQ-EEEEKLTCL 516

Query: 240 EAAASDSVFELG 251
             A+ DS  ELG
Sbjct: 517 --ASDDSGLELG 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839191|ref|XP_002887477.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297333318|gb|EFH63736.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 173/233 (74%), Gaps = 3/233 (1%)

Query: 2   GKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN 61
           GK+LP +L+L +P   +   ++  + +E  W TKWA KR+IMVM AGFG GFVYYGIQLN
Sbjct: 290 GKQLPADLSLVDPIPER---DDQTSSSEKFWKTKWAVKRIIMVMMAGFGSGFVYYGIQLN 346

Query: 62  VGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNN 121
             NLNFNLY +VA+NALME PAV IG+ LL   NRR L S S+Y+AG A +LC + S + 
Sbjct: 347 AENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSNSSYLAGVACLLCAVLSIHR 406

Query: 122 NNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV 181
             +      W QL +E VGFMA+STA+DV+Y+YCVELFPTNVRN AVS LRQA MLGAS 
Sbjct: 407 VIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLLRQAFMLGASA 466

Query: 182 SPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEE 234
           +PLLV +GR S  +SF+VFG  S+ SGV+SLWL ET+NAPLYETL QQG+ EE
Sbjct: 467 APLLVALGRESAMMSFIVFGVASVLSGVVSLWLRETRNAPLYETLAQQGKAEE 519

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21618320|gb|AAM67370.1| unknown [Arabidopsis thaliana]

 Score =  289 bits (739), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 140/233 (60%), Positives = 173/233 (74%), Gaps = 3/233 (1%)

Query: 2   GKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN 61
           GK+LP +L+L +P   +   ++  + +E  W TKWA KR+IMVM AGFG GFVYYGIQLN
Sbjct: 90  GKQLPADLSLVDPIPER---DDQTSSSEKFWKTKWAVKRIIMVMMAGFGSGFVYYGIQLN 146

Query: 62  VGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNN 121
             NLNFNLY +VA+NALME PAV IG+ LL   NRR L S S+Y+AG A +LC + S + 
Sbjct: 147 AENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSNSSYLAGFACLLCAVLSIHR 206

Query: 122 NNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV 181
             +      W QL +E VGFMA+STA+DV+Y+YCVELFPTNVRN AVS LRQA MLGAS 
Sbjct: 207 VIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLLRQAFMLGASA 266

Query: 182 SPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEE 234
           +PLLV +GR S  +SF+VFG  S+ SG++SLWL ET+NAPLYETL QQG+ EE
Sbjct: 267 APLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPLYETLAQQGKAEE 319

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698926|ref|NP_565059.2| organic cation/carnitine transporter1 [Arabidopsis thaliana] gi|75262291|sp|Q9CAT6.1|OCT1_ARATH RecName: Full=Organic cation/carnitine transporter 1; Short=AtOCT1 gi|12324316|gb|AAG52125.1|AC010556_7 putative transporter; 29320-27598 [Arabidopsis thaliana] gi|27311699|gb|AAO00815.1| putative transporter [Arabidopsis thaliana] gi|31711954|gb|AAP68333.1| At1g73220 [Arabidopsis thaliana] gi|332197310|gb|AEE35431.1| organic cation/carnitine transporter1 [Arabidopsis thaliana]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/233 (60%), Positives = 173/233 (74%), Gaps = 3/233 (1%)

Query: 2   GKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN 61
           GK+LP +L+L +P   +   ++  + +E  W TKWA KR+IMVM AGFG GFVYYGIQLN
Sbjct: 301 GKQLPADLSLVDPIPER---DDQTSSSEKFWKTKWAVKRIIMVMMAGFGSGFVYYGIQLN 357

Query: 62  VGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNN 121
             NLNFNLY +VA+NALME PAV IG+ LL   NRR L S S+Y+AG A +LC + S + 
Sbjct: 358 AENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSNSSYLAGFACLLCAVLSIHR 417

Query: 122 NNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV 181
             +      W QL +E VGFMA+STA+DV+Y+YCVELFPTNVRN AVS LRQA MLGAS 
Sbjct: 418 VIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLLRQAFMLGASA 477

Query: 182 SPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQQGEEEE 234
           +PLLV +GR S  +SF+VFG  S+ SG++SLWL ET+NAPLYETL QQG+ EE
Sbjct: 478 APLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPLYETLAQQGKAEE 530

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|361067955|gb|AEW08289.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150743|gb|AFG57382.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150749|gb|AFG57385.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150751|gb|AFG57386.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150753|gb|AFG57387.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150755|gb|AFG57388.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150757|gb|AFG57389.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150759|gb|AFG57390.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150761|gb|AFG57391.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150763|gb|AFG57392.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence gi|383150765|gb|AFG57393.1| Pinus taeda anonymous locus 2_5744_01 genomic sequence

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 123/159 (77%), Gaps = 7/159 (4%)

Query: 52  GFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSAS 111
           G  YYGIQLNV NLNF+LYF+VA NALMEIPAV  G++LL+F +RR+L++  + +AG + 
Sbjct: 1   GLAYYGIQLNVENLNFDLYFTVAFNALMEIPAVFGGSLLLTFVDRRILVASCSVLAGISC 60

Query: 112 ILCTLFSNNNNNKGKGGG---SWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAV 168
           I+CTLF    +  G G     SW QLI E +GFMA S +FDVMYIY VELFPTNVRNIAV
Sbjct: 61  IICTLF----HQSGTGVSVYRSWAQLIAESIGFMAVSLSFDVMYIYSVELFPTNVRNIAV 116

Query: 169 SFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFS 207
           S LRQALM GA+++PLLV++GR++ SLSFLVFG + I S
Sbjct: 117 SMLRQALMSGAALAPLLVILGRINASLSFLVFGLVGIVS 155

Source: Pinus radiata

Species: Pinus radiata

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2197244	539	OCT1 "AT1G73220" [Arabidopsis	0.870	0.411	0.604	1.3e-68
TAIR|locus:2207360	527	OCT2 "AT1G79360" [Arabidopsis	0.737	0.356	0.395	1.4e-30
TAIR|locus:2206430	515	OCT5 "AT1G79410" [Arabidopsis	0.792	0.392	0.377	1.5e-30
TAIR|locus:2032825	518	OCT3 "AT1G16390" [Arabidopsis	0.717	0.353	0.387	5.8e-30
TAIR|locus:2032790	521	OCT6 "AT1G16370" [Arabidopsis	0.725	0.355	0.364	1.9e-27
TAIR|locus:2083425	526	OCT4 "organic cation/carnitine	0.823	0.399	0.336	2.5e-25
UNIPROTKB|F1NSV2	433	SLC22A15 "Uncharacterized prot	0.705	0.415	0.348	1.3e-22
UNIPROTKB|F1NC31	486	LOC423653 "Uncharacterized pro	0.709	0.372	0.349	3.9e-22
UNIPROTKB|E1B8T2	547	SLC22A15 "Uncharacterized prot	0.854	0.398	0.293	9e-21
UNIPROTKB|F1SAX0	549	SLC22A15 "Uncharacterized prot	0.713	0.331	0.327	1.5e-20

TAIR|locus:2197244 OCT1 "AT1G73220" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 136/225 (60%), Positives = 164/225 (72%)

Query:     2 GKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN 61
             GK+LP +L+L +P   +    +S   +E  W TKWA KR+IMVM AGFG GFVYYGIQLN
Sbjct:   301 GKQLPADLSLVDPIPERDDQTSS---SEKFWKTKWAVKRIIMVMMAGFGSGFVYYGIQLN 357

Query:    62 VGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSXXX 121
               NLNFNLY +VA+NALME PAV IG+ LL   NRR L S S+Y+AG A +LC + S   
Sbjct:   358 AENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSNSSYLAGFACLLCAVLSIHR 417

Query:   122 XXXXXXXXSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV 181
                      W QL +E VGFMA+STA+DV+Y+YCVELFPTNVRN AVS LRQA MLGAS 
Sbjct:   418 VIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLLRQAFMLGASA 477

Query:   182 SPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETL 226
             +PLLV +GR S  +SF+VFG  S+ SG++SLWL ET+NAPLYETL
Sbjct:   478 APLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPLYETL 522

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0015226 "carnitine transmembrane transporter activity" evidence=IDA

GO:0010150 "leaf senescence" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2207360 OCT2 "AT1G79360" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 76/192 (39%), Positives = 114/192 (59%)

Query:    35 KWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFT 94
             +WA KRL  VM   FG+G VYYG+ L + NL+FN+Y S A NALM++PA +I   L+   
Sbjct:   321 RWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAAFNALMDLPANLITLFLVDKL 380

Query:    95 NRRLLLSRSAYVAGSASILCTLFSXXXXXXXXXXXSWPQLIIEGVGFMAASTAFDVMYIY 154
             +RR  L     + G +S+L  +F+              QL +E + + +A +AF++  IY
Sbjct:   381 SRRNALIGFTALGGVSSVL--IFALHNMRIGNHGAL--QLALELISYFSACSAFNMEMIY 436

Query:   155 CVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWL 214
              +ELFPT VRN A++  RQAL+LG   SP++V  GR +   SF +FG      G+ ++ L
Sbjct:   437 TIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFGLFGLAIGLLGLFAVGL 496

Query:   215 PETKNAPLYETL 226
             PET+ + L +T+
Sbjct:   497 PETRGSDLCDTM 508

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2206430 OCT5 "AT1G79410" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 79/209 (37%), Positives = 115/209 (55%)

Query:    18 KTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNA 77
             +T    S    + L+  KWA +R+ +VM   FG+G  YYG+ L V ++  N+Y S ALNA
Sbjct:   298 ETLEQTSSYSIKDLFIIKWAFRRVTLVMIIMFGLGMSYYGVPLAVRDIKVNIYMSEALNA 357

Query:    78 LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSXXXXXXXXXXXSWPQLIIE 137
             ++E+P  V+  +LL   +RR  +  +  + G++ +LC + S                 +E
Sbjct:   358 MVELPTFVVTPILLEQFSRRSSVLVNCLIGGASGVLCFVMSLYGRTKIAFA-------LE 410

Query:   138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSF 197
                F  A   F++M IY VELFPT VRN A   LRQAL++G +  PL+  +GR  PSLSF
Sbjct:   411 LGSFFCARIGFNLMAIYLVELFPTCVRNSATMMLRQALVVGGACCPLIASLGRNVPSLSF 470

Query:   198 LVFGALSIFSGVLSLWLPETKNAPLYETL 226
              VFG      G+ +L LPETK   L +T+
Sbjct:   471 AVFGFAMSGLGLFALLLPETKGLSLCDTM 499

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2032825 OCT3 "AT1G16390" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 5.8e-30, P = 5.8e-30
 Identities = 74/191 (38%), Positives = 108/191 (56%)

Query:    36 WAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTN 95
             W+ +RL+  M  GFG+G VYYG+ L + NLNFNLY  V  NAL E PA +I    +   N
Sbjct:   321 WSFRRLLAAMVVGFGIGMVYYGMPLALTNLNFNLYLGVVFNALSEFPAFLITFFFIDKIN 380

Query:    96 RRLLLSRSAYVAGSASILCTLFSXXXXXXXXXXXSWPQLIIEGVGFMAASTAFDVMYIYC 155
             RR  L     ++G +S L  +                Q+++E V F +A TAF++  IY 
Sbjct:   381 RRDALIGFTALSGISSALIAVLGQQLGSL--------QIVLELVSFFSACTAFNMTLIYT 432

Query:   156 VELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLP 215
             +E+FPT VRN A+S +RQAL+ G   SP++V  GR +   S+ +FG +    G+    LP
Sbjct:   433 IEMFPTCVRNSAISMVRQALVFGGVFSPVMVAAGRENQFWSYGLFGLIIGLCGLFVFGLP 492

Query:   216 ETKNAPLYETL 226
             ET+ + L +T+
Sbjct:   493 ETRGSVLCDTM 503

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2032790 OCT6 "AT1G16370" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.9e-27, P = 1.9e-27
 Identities = 70/192 (36%), Positives = 108/192 (56%)

Query:    35 KWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFT 94
             KWA +R+++VM   FG+G  YYG+ L   +++ N+Y S  LNAL+E+P  VI  +LL   
Sbjct:   321 KWAFRRILVVMIIMFGLGISYYGVPLAARDIDVNIYLSETLNALVELPTFVITPILLERF 380

Query:    95 NRRLLLSRSAYVAGSASILCTLFSXXXXXXXXXXXSWPQLIIEGVGFMAASTAFDVMYIY 154
             NRR  +  +  + G++ +LC + S              +L   G  F  A   F++M ++
Sbjct:   381 NRRSSVLVNTLLGGASGVLCFVLSILGKTEIAFAF---EL---GT-FFCARIGFNLMAVF 433

Query:   155 CVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWL 214
              VE+FPT VR+ A    RQAL++G +  PL+  +GR  PS+SF +FG      G+  L L
Sbjct:   434 MVEMFPTCVRSSATMMFRQALVVGGACCPLIASIGRYIPSVSFAIFGIAMSGLGMFVLIL 493

Query:   215 PETKNAPLYETL 226
             PETK   L +++
Sbjct:   494 PETKGLSLCDSM 505

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2083425 OCT4 "organic cation/carnitine transporter4" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 79/235 (33%), Positives = 122/235 (51%)

Query:     2 GKKLPTNLTLANPSAAKTGSNNSDNKNESLWGT-------KWAAKRLIMVMTAGFGVGFV 54
             G+ +P  +TLA     +   NN+  +N ++ G+            RL++ +   F V  V
Sbjct:   288 GRHIPAGVTLALDDDVE---NNNGERNTAVEGSLKDVILSPLMRMRLVISVAISFTVSIV 344

Query:    55 YYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILC 114
             YYG+ LNVGNL  NLY +V +NA+ E+PA  I  VLL    R+ L   + + +    + C
Sbjct:   345 YYGLSLNVGNLKTNLYLNVFVNAVSEMPAFAITAVLLDKYGRKPLSIGTQWFS---CVFC 401

Query:   115 TL-FSXXXXXXXXXXXSWPQL-IIEGV-GFMAASTAFDVMYIYCVELFPTNVRNIAVSFL 171
              + FS            W  + ++ GV G    +  +++++IY  ELFPT VRN A+   
Sbjct:   402 LVGFSVWGAG------PWKSVRMVSGVLGIFGMAGTYNLLFIYIAELFPTVVRNAALGCA 455

Query:   172 RQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETL 226
              QA  +GA ++P +VV+G   P   F VF    +  G L+ +LPET N PLY+T+
Sbjct:   456 TQAAQMGAILAPFVVVLGEELP---FGVFAVCGLVGGGLAFYLPETLNKPLYDTM 507

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|F1NSV2 SLC22A15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 265 (98.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 67/192 (34%), Positives = 106/192 (55%)

Query:    39 KRLIMVMT--AGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLS--FT 94
             + LIM+ T    F    VYYG+ LNVG+L  N+Y ++AL+ L+EIPA  I   L++  + 
Sbjct:   216 RTLIMMFTWYLKFVCSLVYYGLTLNVGDLGGNIYANLALSGLIEIPAYPICIYLINQKWF 275

Query:    95 NRRLLLSRSAYVAGSASILCTLFSXXXXXXXXXXXSWPQLIIEGVGFMAASTAFDVMYIY 154
              R+  LS   ++ G A ++  +F            S        +G +  S AF+++YIY
Sbjct:   276 GRKRTLSAFLFLGGLACLI-VMFLPKKKVVNSRSLSL-------LGKLTISAAFNIVYIY 327

Query:   155 CVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWL 214
               EL+PT +RN+ +        +G  ++P +  +  +  SL ++VFGA  + SG+LSL L
Sbjct:   328 TSELYPTVIRNVGMGACSMFSRVGGIIAPFVPSLKSVQWSLPYIVFGATGLLSGLLSLLL 387

Query:   215 PETKNAPLYETL 226
             PET N+PL ET+
Sbjct:   388 PETLNSPLLETI 399

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NC31 LOC423653 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 3.9e-22, P = 3.9e-22
 Identities = 66/189 (34%), Positives = 101/189 (53%)

Query:    40 RLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPA--VVIGTVLLSFTNRR 97
             R +++M   +   FVYYG+ LN G L  NLY +VAL  L+E+PA  + I  +  S++ RR
Sbjct:   283 RTVVLMYIWYVCSFVYYGLTLNAGELGGNLYLNVALYGLVEVPAFPLCIFFIEKSWSGRR 342

Query:    98 LLLSRSAYVAGSASILCTLFSXXXXXXXXXXXSWPQLIIEGVGFMAASTAFDVMYIYCVE 157
               +      AG A I  T+F              P L+    G M  S AF++ YIY  E
Sbjct:   343 RTMMWFLMFAGFACIF-TMFLQKNSGLLLS----PTLLAL-CGKMMVSAAFNIAYIYTSE 396

Query:   158 LFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPET 217
             L+PT +RN  +     +   G  ++P +  +  +SPS+ F+VFG   + +G L+L+LPET
Sbjct:   397 LYPTVLRNAGLGVCSMSCRFGGILAPFVPTMKSLSPSVPFVVFGISGLSAGFLTLFLPET 456

Query:   218 KNAPLYETL 226
              N P+ E++
Sbjct:   457 LNKPIAESI 465

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1B8T2 SLC22A15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 252 (93.8 bits), Expect = 9.0e-21, P = 9.0e-21
 Identities = 66/225 (29%), Positives = 114/225 (50%)

Query:     3 KKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNV 62
             ++L  + +LA P+    GS         L+  +      + +M   F    VYYG+ L+ 
Sbjct:   273 RQLRCSFSLARPAG---GSCEEAGSVLDLFRRRVLLGHTLTLMFIWFVCSLVYYGLTLSA 329

Query:    63 GNLNFNLYFSVALNALMEIPAVVIGTVLLS--FTNRRLLLSRSAYVAGSASILCTLFSXX 120
             G+L  N+Y ++AL+ L+EIP+  +   L++  +  R+  L+    + G A ++       
Sbjct:   330 GDLGGNIYANLALSGLIEIPSYPVCIYLINQRWFGRKRTLAAFLCLGGLACLIVMFLPEK 389

Query:   121 XXXXXXXXXSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGAS 180
                      +   L +  +G +  S AF+++YIY  EL+PT +RN+ +        +G  
Sbjct:   390 KDTGVFAVVNSHSLSL--LGKLTISAAFNIVYIYTSELYPTVIRNVGLGTCSMFSRVGGI 447

Query:   181 VSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYET 225
             ++P +  +  +  SL F+VFGA  + SG+LSL LPET N+PL ET
Sbjct:   448 IAPFIPSLKYVQWSLPFIVFGATGLTSGLLSLLLPETLNSPLLET 492

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1SAX0 SLC22A15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 250 (93.1 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 61/186 (32%), Positives = 100/186 (53%)

Query:    42 IMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLS--FTNRRLL 99
             + +M   F    VYYG+ L+ G+L  N+Y ++AL+ L+EIP+  I   L++  +  R+  
Sbjct:   311 LTLMFIWFVCSLVYYGLTLSAGDLGGNIYANLALSGLIEIPSYPICIYLINQKWFGRKRT 370

Query:   100 LSRSAYVAGSASILCTLFSXXXXXXXXXXXSWPQLIIEGVGFMAASTAFDVMYIYCVELF 159
             L+    + G A ++                +   L +  +G +  S AF+V+YIY  EL+
Sbjct:   371 LAAFLCLGGLACLIVMFLPEKKDTGVFAVVNSHSLSL--LGKLTISAAFNVVYIYTSELY 428

Query:   160 PTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKN 219
             PT +RN+ +        +G  ++P +  +  +  SL F+VFGA  + SG+LSL LPET N
Sbjct:   429 PTVIRNVGLGTCSMFSRVGGIIAPFIPSLKYVQWSLPFIVFGATGLTSGLLSLLLPETLN 488

Query:   220 APLYET 225
             +PL ET
Sbjct:   489 SPLLET 494

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.122.131.1	hypothetical protein (508 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.10530002	annotation not avaliable (163 aa)			•						0.460
	gw1.I.810.1	hypothetical protein (504 aa)			•						0.413
	fgenesh4_pg.C_LG_XI000339	hypothetical protein (521 aa)			•						0.408
	gw1.IX.3870.1	hypothetical protein (483 aa)			•						0.407
	eugene3.134000001	hypothetical protein (307 aa)			•						0.401
	estExt_fgenesh4_pm.C_LG_IV0065	hypothetical protein (523 aa)			•						0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-37
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-06
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.001
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.002

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  137 bits (346), Expect = 2e-37
 Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 9/224 (4%)

Query: 2   GKKLPTNLTLANPSAAKTGSNNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN 61
           GKKLP  +   +     + S    +  + L+ T    K  + +M   F   F YYG+ L+
Sbjct: 291 GKKLPAEVLSLSLEKDLSSSKKQYSFLD-LFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD 349

Query: 62  VGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNN 121
           +GNL  N+Y  + ++ L+E+PA +I  +L+    RR  ++ S  +AG A +L        
Sbjct: 350 LGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-- 407

Query: 122 NNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV 181
                    + +  +  +G    ++AF ++Y+Y  EL+PT VRN+ V        +G+ +
Sbjct: 408 ------DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII 461

Query: 182 SPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYET 225
           SP LV +G     L  ++FG L++ +G+L+L+LPETK  PL ET
Sbjct: 462 SPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 19/187 (10%)

Query: 39  KRLIMVMTAGFGVGFVYYGI--------QLNVGNLNFNLYFSVALNALMEIPAVVIGTVL 90
           + L+++  A F + F YYG+        Q  +G         ++L  L  I   ++G +L
Sbjct: 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234

Query: 91  LSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDV 150
                RR LL     +  +  +L    + +             L+   +       AF  
Sbjct: 235 SDRLGRRRLLLLIGLLLAALGLLLLALAPS---------LALLLVALLLLGFGLGFAFPA 285

Query: 151 MYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLV--VVGRMSPSLSFLVFGALSIFSG 208
           +     EL P   R  A         LG ++ PLL   ++        FL+  AL++ + 
Sbjct: 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345

Query: 209 VLSLWLP 215
           +L L LP
Sbjct: 346 LLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 37/217 (17%)

Query: 30  SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTV 89
            L+  K   +RL+M        G +    Q   G  N   Y+S  +   + +   ++ T+
Sbjct: 243 ELFRGKTVRQRLLM--------GVMLQIFQQLTGI-NAIFYYSPTIFETLGLSDSLLVTI 293

Query: 90  LLSFTN----------------RRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQ 133
           ++   N                R LLL  +A +A    +L         +KG G  +   
Sbjct: 294 IVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVA--- 350

Query: 134 LIIEGVGFMAASTAFD---VMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLL--VVV 188
             I  +    A  A     V ++   ELFP  VR  A++    A  L   +   L  ++ 
Sbjct: 351 --IVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIIT 408

Query: 189 GRMSPSLSFLVFGALSIFSGVLSLW-LPETKNAPLYE 224
           G +     FLVF  L +   +   + +PETK   L E
Sbjct: 409 GAIGGY-VFLVFAGLLVLFILFVFFFVPETKGRTLEE 444

Length = 449

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 69  LYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGG 128
           +YF   L  L  +P  ++  +L+    R  +L+ S  ++    I C   S  N+      
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSC---ISCFFLSFGNSESAMIA 653

Query: 129 GSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFL----RQALMLGASVSPL 184
                L + G   +AA  A DV+    VEL+P++ R  A  FL    + A +LG  +   
Sbjct: 654 ----LLCLFGGLSIAAWNALDVL---TVELYPSDKRATAFGFLNALCKAAAVLGILIFGS 706

Query: 185 LVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPL 222
            V + + +P    L   A     G+L+L LP+T+   L
Sbjct: 707 FVGITKAAP---ILFASAALACGGLLALKLPDTRGQVL 741

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 150 VMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL--LVVVGRMSPSLSFLVFGALSIFS 207
           V ++   E+FP ++R   +S    A  L   +       ++  +     F+ FG L++  
Sbjct: 403 VPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLG 462

Query: 208 GVLSLW-LPETKNAPLYET 225
            +   + LPETK   L E 
Sbjct: 463 LIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
TIGR00898	505	2A0119 cation transport protein.	99.9
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.9
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.87
KOG0569	485	consensus Permease of the major facilitator superf	99.87
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.83
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.74
PRK10642	490	proline/glycine betaine transporter; Provisional	99.74
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.71
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.7
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.69
PRK09952	438	shikimate transporter; Provisional	99.68
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.68
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.67
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.67
TIGR00900	365	2A0121 H+ Antiporter protein.	99.66
TIGR00895	398	2A0115 benzoate transport.	99.65
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.65
KOG0254	513	consensus Predicted transporter (major facilitator	99.64
TIGR00891	405	2A0112 putative sialic acid transporter.	99.63
PRK11663	434	regulatory protein UhpC; Provisional	99.63
PRK10054	395	putative transporter; Provisional	99.62
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.62
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.61
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.61
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.61
PRK10489	417	enterobactin exporter EntS; Provisional	99.61
TIGR00893	399	2A0114 d-galactonate transporter.	99.61
PRK10489	417	enterobactin exporter EntS; Provisional	99.61
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.61
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.6
PRK03545	390	putative arabinose transporter; Provisional	99.6
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.6
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.6
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.6
TIGR00898	505	2A0119 cation transport protein.	99.59
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.59
PLN00028	476	nitrate transmembrane transporter; Provisional	99.59
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.59
PRK12307	426	putative sialic acid transporter; Provisional	99.58
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.58
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.58
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.58
PRK03893	496	putative sialic acid transporter; Provisional	99.58
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.58
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.58
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.57
PRK05122	399	major facilitator superfamily transporter; Provisi	99.57
PRK10091	382	MFS transport protein AraJ; Provisional	99.57
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.57
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.56
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.56
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.56
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.56
PLN00028	476	nitrate transmembrane transporter; Provisional	99.56
PRK12307	426	putative sialic acid transporter; Provisional	99.55
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.55
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.55
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.55
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.55
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.55
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.54
PRK09528	420	lacY galactoside permease; Reviewed	99.54
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.54
PRK03699	394	putative transporter; Provisional	99.54
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.54
PRK10504	471	putative transporter; Provisional	99.54
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.53
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.53
PRK11043	401	putative transporter; Provisional	99.53
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.53
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.52
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.52
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.52
KOG2615	451	consensus Permease of the major facilitator superf	99.52
PRK10642	490	proline/glycine betaine transporter; Provisional	99.52
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.51
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.51
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.5
PRK09705	393	cynX putative cyanate transporter; Provisional	99.5
TIGR00893	399	2A0114 d-galactonate transporter.	99.5
KOG0569	485	consensus Permease of the major facilitator superf	99.5
PRK11010	491	ampG muropeptide transporter; Validated	99.5
PRK09952	438	shikimate transporter; Provisional	99.49
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.48
PRK11663	434	regulatory protein UhpC; Provisional	99.48
PRK15011	393	sugar efflux transporter B; Provisional	99.48
PRK09874	408	drug efflux system protein MdtG; Provisional	99.48
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.47
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.47
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.47
PRK03633	381	putative MFS family transporter protein; Provision	99.47
PRK05122	399	major facilitator superfamily transporter; Provisi	99.47
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.47
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.46
PRK03545	390	putative arabinose transporter; Provisional	99.46
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.46
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.46
PRK03633	381	putative MFS family transporter protein; Provision	99.46
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.45
PRK10429	473	melibiose:sodium symporter; Provisional	99.45
PRK10504	471	putative transporter; Provisional	99.45
PRK12382	392	putative transporter; Provisional	99.45
PRK11010	491	ampG muropeptide transporter; Validated	99.44
TIGR00900	365	2A0121 H+ Antiporter protein.	99.44
PRK09848	448	glucuronide transporter; Provisional	99.44
COG2211	467	MelB Na+/melibiose symporter and related transport	99.44
PRK12382	392	putative transporter; Provisional	99.43
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.43
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.43
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.42
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.42
PRK15075	434	citrate-proton symporter; Provisional	99.42
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.42
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.42
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.41
PRK11902	402	ampG muropeptide transporter; Reviewed	99.41
PRK15075	434	citrate-proton symporter; Provisional	99.41
PRK09705	393	cynX putative cyanate transporter; Provisional	99.4
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.4
PTZ00207	591	hypothetical protein; Provisional	99.4
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.4
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.39
PRK09874	408	drug efflux system protein MdtG; Provisional	99.39
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.39
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.39
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.39
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.39
PRK09669	444	putative symporter YagG; Provisional	99.39
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.38
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.38
TIGR00901	356	2A0125 AmpG-related permease.	99.37
PRK03893	496	putative sialic acid transporter; Provisional	99.37
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.36
PRK09528	420	lacY galactoside permease; Reviewed	99.36
TIGR00805	633	oat sodium-independent organic anion transporter.	99.36
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.36
TIGR00895	398	2A0115 benzoate transport.	99.36
PRK03699	394	putative transporter; Provisional	99.36
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.35
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.35
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.34
PRK10133	438	L-fucose transporter; Provisional	99.33
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.33
KOG2532	466	consensus Permease of the major facilitator superf	99.32
TIGR00891	405	2A0112 putative sialic acid transporter.	99.32
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.32
KOG0254	513	consensus Predicted transporter (major facilitator	99.31
PRK11462	460	putative transporter; Provisional	99.31
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.31
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.31
PF13347	428	MFS_2: MFS/sugar transport protein	99.31
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.3
PRK11902	402	ampG muropeptide transporter; Reviewed	99.3
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.29
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.28
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.28
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.27
PRK10133	438	L-fucose transporter; Provisional	99.26
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.26
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.25
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.25
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.24
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.24
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.24
KOG2533	495	consensus Permease of the major facilitator superf	99.24
PRK15011	393	sugar efflux transporter B; Provisional	99.23
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.23
TIGR00901	356	2A0125 AmpG-related permease.	99.22
PRK11043	401	putative transporter; Provisional	99.22
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.21
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.2
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.19
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.19
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.18
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.16
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.16
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.15
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.15
PRK10054	395	putative transporter; Provisional	99.14
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.14
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.13
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.13
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.13
PRK10091	382	MFS transport protein AraJ; Provisional	99.11
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.09
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.08
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.01
KOG2532	466	consensus Permease of the major facilitator superf	98.99
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.99
KOG2533	495	consensus Permease of the major facilitator superf	98.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.96
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.93
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.93
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.93
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.92
KOG3762	618	consensus Predicted transporter [General function	98.9
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.89
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.88
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.83
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.81
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.79
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.75
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.74
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.73
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.68
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.68
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.66
PRK09669	444	putative symporter YagG; Provisional	98.62
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.6
PRK10429	473	melibiose:sodium symporter; Provisional	98.6
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.58
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.45
PTZ00207	591	hypothetical protein; Provisional	98.45
PRK11462	460	putative transporter; Provisional	98.44
KOG2563	480	consensus Permease of the major facilitator superf	98.4
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.39
KOG2563	480	consensus Permease of the major facilitator superf	98.39
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.38
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.37
PF13347	428	MFS_2: MFS/sugar transport protein	98.32
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.27
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.27
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.26
COG2211	467	MelB Na+/melibiose symporter and related transport	98.21
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.18
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.16
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.13
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.1
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.96
PF12832	77	MFS_1_like: MFS_1 like family	97.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.94
PRK09848	448	glucuronide transporter; Provisional	97.91
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.88
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.8
COG0477	338	ProP Permeases of the major facilitator superfamil	97.73
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.72
KOG2615	451	consensus Permease of the major facilitator superf	97.68
COG3202	509	ATP/ADP translocase [Energy production and convers	97.65
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.65
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.63
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.62
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.49
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.32
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.27
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.25
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.19
TIGR00805	633	oat sodium-independent organic anion transporter.	97.15
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.12
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.02
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.99
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.93
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.71
KOG3626	735	consensus Organic anion transporter [Secondary met	96.64
KOG0637	498	consensus Sucrose transporter and related proteins	96.61
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.46
KOG3626	735	consensus Organic anion transporter [Secondary met	96.21
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.07
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.79
PRK03612	521	spermidine synthase; Provisional	95.65
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	95.26
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.91
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.54
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.41
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	94.33
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.21
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.21
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	93.78
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.75
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.72
KOG3762	618	consensus Predicted transporter [General function	93.68
KOG3810	433	consensus Micronutrient transporters (folate trans	93.45
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.19
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.38
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	92.36
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.28
KOG2325	488	consensus Predicted transporter/transmembrane prot	91.26
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	89.92
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	89.52
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	88.16
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	86.91
KOG3810	433	consensus Micronutrient transporters (folate trans	86.66
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	85.76

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=7.5e-22  Score=166.07  Aligned_cols=191  Identities=32%  Similarity=0.554  Sum_probs=158.4

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAY  105 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~  105 (255)
                      .+++++++++.+++.++..+..++...+.+|+...+.+..+.+......+.++..+++.++.++++||+|||+.+.++.+
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~  393 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLL  393 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            57889999999888888888888888888998888888888888888788888999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhH
Q 045196          106 VAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLL  185 (255)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~  185 (255)
                      +++++++++.+..        ....+..+...++..++.+..++..+.+.+|.+|++.|+++.|+.+..+.+|++++|++
T Consensus       394 ~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i  465 (505)
T TIGR00898       394 LAGVALLLLLFVP--------VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFL  465 (505)
T ss_pred             HHHHHHHHHHHcC--------CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHH
Confidence            8888877766652        12224444555556666666778889999999999999999999999999999999999


Q ss_pred             HHhhhcCCCchhHHHHHHHHHHHHHHHHhccCCCCCchH
Q 045196          186 VVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYE  224 (255)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (255)
                      .+....+...++.+++++.+++.++.+++|||++++++|
T Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       466 VYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE  504 (505)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence            885555566788888888888887778889999887654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=9.1e-23  Score=156.62  Aligned_cols=189  Identities=26%  Similarity=0.382  Sum_probs=154.4

Q ss_pred             CCccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeeccc---------------------------CchhHHHHHH
Q 045196           23 NSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNL---------------------------NFNLYFSVAL   75 (255)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~   75 (255)
                      +...+..+++. |++||.++..+..++...+.||+.......+                           ....+...++
T Consensus       311 e~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdlli  389 (528)
T KOG0253|consen  311 EVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLI  389 (528)
T ss_pred             ccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHH
Confidence            34456677774 5679999999999999999999865322110                           0123556678


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q 045196           76 NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYC  155 (255)
Q Consensus        76 ~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (255)
                      .++..++|.++.++++||+|||+.+..+.++++++.+++....          ......++.+.+.++.++.+.+.|+|.
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~----------~rn~~tvllf~arafisg~fqvaYvYt  459 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK----------TRNAYTVLLFTARAFISGAFQVAYVYT  459 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc----------CcchhHHHHHHHHHHHhchheEEEEec
Confidence            8899999999999999999999999999999999998888773          444556667778888888899999999


Q ss_pred             ccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCchhHHHHHHHHHHHHHHHHhc-cCCCCCc
Q 045196          156 VELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLP-ETKNAPL  222 (255)
Q Consensus       156 ~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~  222 (255)
                      +|++|+..|+++.|.+...+++|+++.|++.-........+..+++++++++.+...++| ||+++.+
T Consensus       460 PEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  460 PEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             CcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            999999999999999999999999999999854444567788999999999988887776 8998864

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.87  E-value=5e-21  Score=164.54  Aligned_cols=140  Identities=19%  Similarity=0.253  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           73 VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      .++.+++.+++.+++|+++||+|||++++++.++.+++++++.+.          .+.+..+++.++.+++.++.++..+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~----------~s~~~ll~~~~l~g~~~~~~~~~~~  670 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG----------NSESAMIALLCLFGGLSIAAWNALD  670 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH----------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344557888999999999999999999999999888888877765          2334444445555666667778899


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH-hhhcCCCchhHHHHHHHHHHHHHHHHhccCCCCCc
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV-VGRMSPSLSFLVFGALSIFSGVLSLWLPETKNAPL  222 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (255)
                      ++++|++|++.|++++|+.+..+++|++++|++.+ +...+...++++++++.++++++.+++|||+++.+
T Consensus       671 a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l  741 (742)
T TIGR01299       671 VLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTRGQVL  741 (742)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            99999999999999999999999999999999987 33344556788888888887777778899988653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=3e-21  Score=156.87  Aligned_cols=205  Identities=18%  Similarity=0.191  Sum_probs=147.1

Q ss_pred             CCccchHHhhcChhHHHHHHHHHHHHHHHHH------HhhheeeeecccCchh---HHHHHHHHHHHHHHHHHHHHHHhh
Q 045196           23 NSDNKNESLWGTKWAAKRLIMVMTAGFGVGF------VYYGIQLNVGNLNFNL---YFSVALNALMEIPAVVIGTVLLSF   93 (255)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr   93 (255)
                      .++.+++++++++..|+...+.+...+++.+      .+|. ..++.+.|.+.   .......++..++.++++.+++||
T Consensus       253 ~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Ys-t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~  331 (485)
T KOG0569|consen  253 KKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYS-TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR  331 (485)
T ss_pred             ccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3667899999999989888888777776632      2333 33445556543   445566778889999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHH---HHHHHHH-HHHHhhhhhhhhhhhccccchhcHHHHHH
Q 045196           94 TNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQ---LIIEGVG-FMAASTAFDVMYIYCVELFPTNVRNIAVS  169 (255)
Q Consensus        94 ~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  169 (255)
                      +|||++++.+..++.++.+++.......+.    ...|..   ++..++. ..+..+..|+.|-+.+|++|++.|+.+++
T Consensus       332 ~gRRpLll~~~~~~~~~~~~~~~~~~l~~~----~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s  407 (485)
T KOG0569|consen  332 LGRRPLLLISLSLMAVALLLMSIALFLSNS----FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS  407 (485)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence            999999999999999888877654321110    112321   2222222 33445667999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhHHHh-hhcCCCchhHHHHHHHHHHHHHH-HHhccCCCCCchHhHHhhhhh
Q 045196          170 FLRQALMLGASVSPLLVVV-GRMSPSLSFLVFGALSIFSGVLS-LWLPETKNAPLYETLKQQGEE  232 (255)
Q Consensus       170 ~~~~~~~~g~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~  232 (255)
                      +.....++..++..+.... ...-....|+++.+.+.+..+.. +.+||||+|+..|+.++.++.
T Consensus       408 ~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  408 VATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            9999999988876666552 22222367788888887776665 577999999998887776544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.83  E-value=3.6e-19  Score=149.58  Aligned_cols=194  Identities=16%  Similarity=0.165  Sum_probs=125.3

Q ss_pred             cchHHhhcCh---hHHHHHHHHHHHHHHHHHHhhheeeeec----ccCchhH---------------HHHHHHHHHHHHH
Q 045196           26 NKNESLWGTK---WAAKRLIMVMTAGFGVGFVYYGIQLNVG----NLNFNLY---------------FSVALNALMEIPA   83 (255)
Q Consensus        26 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~~~~~~~~~~~~   83 (255)
                      .+++++++++   +.++.++.....++.+.+.+|+...+.+    ..|.+..               ....+..++.+++
T Consensus       272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g  351 (502)
T TIGR00887       272 ASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPG  351 (502)
T ss_pred             hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578887642   2234444445556666667777654443    2333211               0122333466778


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhc
Q 045196           84 VVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNV  163 (255)
Q Consensus        84 ~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  163 (255)
                      .+++++++||+|||++++++..+++++++++.....      ............+...++..+..+..+.+.+|++|++.
T Consensus       352 ~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~  425 (502)
T TIGR00887       352 YWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN------HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY  425 (502)
T ss_pred             HHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH------hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH
Confidence            899999999999999998888777776665554320      00111111112122222233455788899999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHhh-h-----------cCCCchhHHHHHHHHHHHHHHHHhccCCCCCchHh
Q 045196          164 RNIAVSFLRQALMLGASVSPLLVVVG-R-----------MSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYET  225 (255)
Q Consensus       164 r~~~~~~~~~~~~~g~~~~p~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (255)
                      |+++.|+.+.+++++++++|.+.+.. +           .+....+++++++++++.+..+++|||++++++|.
T Consensus       426 R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei  499 (502)
T TIGR00887       426 RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEEL  499 (502)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhh
Confidence            99999999999999999999988742 2           11234677788887777666677799999887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.74  E-value=1.2e-18  Score=137.68  Aligned_cols=195  Identities=15%  Similarity=0.159  Sum_probs=141.5

Q ss_pred             hHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc----cCch----hH-------H-HHHHHHHHHHHHHHHHHHHH
Q 045196           28 NESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN----LNFN----LY-------F-SVALNALMEIPAVVIGTVLL   91 (255)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~-------~-~~~~~~~~~~~~~~~~g~l~   91 (255)
                      +...+..+ +-++++..+..||...+.+|...++...    ++..    ..       . ..++.....++|.++..+++
T Consensus       294 F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~i  372 (538)
T KOG0252|consen  294 FSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFI  372 (538)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEe
Confidence            33444433 3578899999999999999887654432    2221    11       1 12223345566888889999


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHH
Q 045196           92 SFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFL  171 (255)
Q Consensus        92 dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  171 (255)
                      |++|||++.+.+++++.+..+.+....  ++   ........+...+...++..+.......+.+|.||++.|+++.|++
T Consensus       373 d~iGRk~iq~~GF~~~~i~~~~~~~~y--~~---~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIs  447 (538)
T KOG0252|consen  373 DIIGRKYIQLMGFFIMTIFFFVIAGPY--NQ---LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGIS  447 (538)
T ss_pred             ehhhhHHHHHhhHHHHHHHHHHHcCCc--cc---ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHH
Confidence            999999999999999988887776653  11   1122223333334444456677788999999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHhhh-------cCCCchhHHHHHHHHHHHHHHHHhccCCCCCchHhHHh
Q 045196          172 RQALMLGASVSPLLVVVGR-------MSPSLSFLVFGALSIFSGVLSLWLPETKNAPLYETLKQ  228 (255)
Q Consensus       172 ~~~~~~g~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (255)
                      ...+.+|++++.+......       .+....+++++++++++.++.+++|||++++++++..+
T Consensus       448 AA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e  511 (538)
T KOG0252|consen  448 AASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNE  511 (538)
T ss_pred             HHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcCh
Confidence            9999999999988776422       35566799999999999888899999999998877433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.74  E-value=1.3e-16  Score=133.83  Aligned_cols=189  Identities=13%  Similarity=0.059  Sum_probs=112.3

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhhee----eee-cccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcch
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQ----LNV-GNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNR   96 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr   96 (255)
                      +.++++++++.  ++.+...+...++....+|...    .++ ..++.+....   .....++.+++.++.|+++||+||
T Consensus       238 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  315 (490)
T PRK10642        238 KVSFKEIATKH--WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGR  315 (490)
T ss_pred             cCCHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34577777642  3333333333333333333322    223 2345443322   233345677888999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH
Q 045196           97 RLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM  176 (255)
Q Consensus        97 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  176 (255)
                      |+.+..+.++..+..+.+....       ...+....++..++.+++.+...+....+.+|++|++.|+++.|+.+..+.
T Consensus       316 r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~  388 (490)
T PRK10642        316 RPFVILGSVALFVLAIPAFILI-------NSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV  388 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH
Confidence            9988877764443333222211       012233334444444444445556677888899999999999999887788


Q ss_pred             HhhhhhhhHHHhh--h-cCCCchhHHHHHHHHHHHHHHHHhccCCCCCc
Q 045196          177 LGASVSPLLVVVG--R-MSPSLSFLVFGALSIFSGVLSLWLPETKNAPL  222 (255)
Q Consensus       177 ~g~~~~p~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (255)
                      +++.++|.+.++.  . .++..++++..+.++++.+..+++||++++..
T Consensus       389 ~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~  437 (490)
T PRK10642        389 LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            8888899888742  2 22344555555666666666677799877654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.71  E-value=3.5e-16  Score=134.97  Aligned_cols=150  Identities=15%  Similarity=0.077  Sum_probs=112.7

Q ss_pred             eeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHH
Q 045196           59 QLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLI  135 (255)
Q Consensus        59 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
                      +.+...++.+....   .....++.+++.+++|+++||+|||+.++++.++.+++.++..+.          .+.+.+++
T Consensus       191 p~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa----------~s~~~llv  260 (742)
T TIGR01299       191 PSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV----------QGYGFFLF  260 (742)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHH
Confidence            33334455544333   333456888999999999999999999999988888887777766          45677777


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hh-------------cCCCchhHHH
Q 045196          136 IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GR-------------MSPSLSFLVF  200 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~-------------~~~~~~~~~~  200 (255)
                      ..++.+++.++..+...+++.|.+|.+.|+...++...+..+|.++++.+...  ..             .+|++.+++.
T Consensus       261 ~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~  340 (742)
T TIGR01299       261 CRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVC  340 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHH
Confidence            88888888888889999999999999999999999999998988888775531  11             1344555555


Q ss_pred             HHHHHHHHHHHHHhccCC
Q 045196          201 GALSIFSGVLSLWLPETK  218 (255)
Q Consensus       201 ~~~~~~~~~~~~~~~e~~  218 (255)
                      ++.++++.++.+++||+.
T Consensus       341 ~lp~ll~ll~~~~lPESP  358 (742)
T TIGR01299       341 AFPCVFAIGALTFMPESP  358 (742)
T ss_pred             HHHHHHHHHHHHHcCCCH
Confidence            555555555567789874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.70  E-value=2.9e-15  Score=126.66  Aligned_cols=199  Identities=34%  Similarity=0.517  Sum_probs=161.7

Q ss_pred             CccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 045196           24 SDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRS  103 (255)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~  103 (255)
                      ++..+.++++.++.++.++...+.++.....+|+.......+|.+.+....+.+....++....+...|+.|||.....+
T Consensus       307 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~  386 (521)
T KOG0255|consen  307 PKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLS  386 (521)
T ss_pred             CCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHH
Confidence            33568899999988999999999999999999999999999999999998888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCc-hHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          104 AYVAGSASILCTLFSNNNNNKGKGGGS-WPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                      .++..++++...+...        ... +...+...++.++.+..+...+.+..|++|+..|..+.+.....+.++++++
T Consensus       387 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~a  458 (521)
T KOG0255|consen  387 LFLAGIGLLLFGWLPD--------DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILA  458 (521)
T ss_pred             HHHHHHHHHHHHHhhc--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888741        122 3455566666666777777789999999999999999999999999999999


Q ss_pred             hhHHHhhhc-CCCchhHHHHHHHHHHHHHH-HHhccCCCCCchHhHHhhh
Q 045196          183 PLLVVVGRM-SPSLSFLVFGALSIFSGVLS-LWLPETKNAPLYETLKQQG  230 (255)
Q Consensus       183 p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~  230 (255)
                      |.+...... .....+.+++....+..++. +++|||+++.+.+..++.+
T Consensus       459 p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  459 PLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence            998864332 23333344466666665555 7889999999877665544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.69  E-value=8.3e-20  Score=151.63  Aligned_cols=201  Identities=19%  Similarity=0.216  Sum_probs=129.7

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHh-----hheeeeecccCchhH-HHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVY-----YGIQLNVGNLNFNLY-FSVALNALMEIPAVVIGTVLLSFTNRRLL   99 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~grr~~   99 (255)
                      .+++++++++..++++...+.....+....     +..+......+.+.. ....+.++..+++.+++.+++||+|||++
T Consensus       239 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~  318 (451)
T PF00083_consen  239 ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKL  318 (451)
T ss_pred             eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            568888888665556665555555442222     222333444444433 34445556777788888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH-HHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHh
Q 045196          100 LSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG-FMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLG  178 (255)
Q Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  178 (255)
                      ++++..+++++.+.+........+. +.......+++..+. ..+..+..+..+.+.+|++|++.|+++.++....++++
T Consensus       319 ~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~  397 (451)
T PF00083_consen  319 LIIGLLLMAICSLILGIIFFLGVSS-SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIG  397 (451)
T ss_pred             ccccccccccccccccccccccccc-ccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence            9999888887777664110000000 000112222222222 22333556788899999999999999999999999999


Q ss_pred             hhhhhhHHHhh--hcCCCchhHHHHHHHHHHHHHH-HHhccCCCCCchHhHH
Q 045196          179 ASVSPLLVVVG--RMSPSLSFLVFGALSIFSGVLS-LWLPETKNAPLYETLK  227 (255)
Q Consensus       179 ~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~  227 (255)
                      ++++|.+....  ..+....+.+++++++++.++. +++|||++++++|.++
T Consensus       398 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  398 GFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence            99888876532  2233556777777777666554 5789999999988754

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09952 shikimate transporter; Provisional

Probab=99.68  E-value=4.5e-15  Score=122.82  Aligned_cols=138  Identities=13%  Similarity=0.068  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY  154 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (255)
                      +.++..+++.++.|+++||+|||+.+..+.++..++.+.......      .....+..+...++.+++.+...+..+++
T Consensus       294 ~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  367 (438)
T PRK09952        294 LVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE------AQSIFWIVFFSIMLANIAHDMVVCVQQPM  367 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566778889999999999999888776655544433322210      01122333333444455555566788999


Q ss_pred             hccccchhcHHHHHHHHHHHHH-HhhhhhhhHHHhh-h-c--CCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          155 CVELFPTNVRNIAVSFLRQALM-LGASVSPLLVVVG-R-M--SPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       155 ~~e~~p~~~r~~~~~~~~~~~~-~g~~~~p~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      ++|.+|++.|+++.++.+..+. +++.++|.+.++. + .  ++..++.+.+++.+++.+..+.++|++
T Consensus       368 ~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        368 FTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ  436 (438)
T ss_pred             HHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence            9999999999999999877765 8889999988842 2 2  234455666666666666666667643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.68  E-value=2.3e-15  Score=126.63  Aligned_cols=143  Identities=8%  Similarity=-0.027  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           73 VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      .....++.+++.++.|+++||+|||+.+.++.++..++.++......    ..+..+.+.+++..++.+++.++..+...
T Consensus        62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  137 (502)
T TIGR00887        62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG----SSPKSVMATLCFWRFWLGVGIGGDYPLSA  137 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC----cccchHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            34455678899999999999999999999988888887776665420    00001135677788888888888889999


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh-------------------------hcCCCchhHHHHHHHHHH
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG-------------------------RMSPSLSFLVFGALSIFS  207 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-------------------------~~~~~~~~~~~~~~~~~~  207 (255)
                      .++.|.+|++.|+++.++.+....+|.++++.+....                         ..+|+..+.+.++..++.
T Consensus       138 ~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~  217 (502)
T TIGR00887       138 IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA  217 (502)
T ss_pred             HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888777665411                         124666676666666666


Q ss_pred             HHHHHHhccCCC
Q 045196          208 GVLSLWLPETKN  219 (255)
Q Consensus       208 ~~~~~~~~e~~~  219 (255)
                      .++.+++||+.+
T Consensus       218 ~~~~~~lpESpr  229 (502)
T TIGR00887       218 LYFRLTIPETPR  229 (502)
T ss_pred             HHHHHhCCCCHH
Confidence            566677899854

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.67  E-value=3.9e-15  Score=122.33  Aligned_cols=187  Identities=14%  Similarity=0.008  Sum_probs=118.8

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchh-----------HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNL-----------YFSVALNALMEIPAVVIGTVLLSFTN   95 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~l~dr~g   95 (255)
                      +.++++|+|.++..++..++........+...+.+..+.+.+.           .....+..+..+++.++.++++||+|
T Consensus       200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g  279 (418)
T TIGR00889       200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG  279 (418)
T ss_pred             hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3456788887655444444443333222211222333333221           22233444577788899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-CchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHH-H
Q 045196           96 RRLLLSRSAYVAGSASILCTLFSNNNNNKGKGG-GSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLR-Q  173 (255)
Q Consensus        96 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~  173 (255)
                      ||+++.++.++.++...++....       ... ..+..++..++.+++.+...+....++.|.+|++.|+++.|+.+ .
T Consensus       280 ~r~~l~~~~~~~~v~~~l~~~~~-------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~  352 (418)
T TIGR00889       280 IKKVMLLSLVAWALRFGFFAYGD-------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLM  352 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            99999999888777665554431       001 12333444555555555666777888999999999999999997 5


Q ss_pred             HHHHhhhhhhhHHHh--hh------cCCCchhHHHHHHHHHHHHHH-HHhccCCCC
Q 045196          174 ALMLGASVSPLLVVV--GR------MSPSLSFLVFGALSIFSGVLS-LWLPETKNA  220 (255)
Q Consensus       174 ~~~~g~~~~p~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~  220 (255)
                      ...+|.+++|.+.+.  ..      .++...|.+.+++.+++.++. ++++|++++
T Consensus       353 ~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       353 CNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            567899999999984  22      134456777777766665554 566776544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.67  E-value=1.3e-14  Score=119.06  Aligned_cols=151  Identities=15%  Similarity=0.126  Sum_probs=117.1

Q ss_pred             eeeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHH
Q 045196           59 QLNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLI  135 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
                      +...++++.+....+.+   ..++..++.++.|+++||+|||+++..+.++.++..++..+.          ++.+.+++
T Consensus        32 ~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~  101 (412)
T TIGR02332        32 LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA----------TGPESLYL  101 (412)
T ss_pred             HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh----------cCHHHHHH
Confidence            34456667665554433   345667788999999999999999999998888888887776          46677777


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh--------hcCCCchhHHHHHHHHHH
Q 045196          136 IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG--------RMSPSLSFLVFGALSIFS  207 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--------~~~~~~~~~~~~~~~~~~  207 (255)
                      ..++.+++.+...+....++.|.+|+++|+++.++.+....+|.+++|.+.+..        ..+|++.|++.++..++.
T Consensus       102 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~  181 (412)
T TIGR02332       102 LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVIL  181 (412)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHH
Confidence            788888888887888888999999999999999999999999999998887632        236788888877776654


Q ss_pred             HHH-HHHhccCCC
Q 045196          208 GVL-SLWLPETKN  219 (255)
Q Consensus       208 ~~~-~~~~~e~~~  219 (255)
                      .++ .+++||++.
T Consensus       182 ~~~~~~~~~~~p~  194 (412)
T TIGR02332       182 GVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHhhccCCCcc
Confidence            443 356677654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.66  E-value=7.5e-15  Score=118.36  Aligned_cols=166  Identities=13%  Similarity=0.043  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHhhheeeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccc
Q 045196           44 VMTAGFGVGFVYYGIQLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNN  120 (255)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~  120 (255)
                      .++..+........++.+..+.+.+......   ...++..++.++.|+++||+|||++++.+..+.++..++..+....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   87 (365)
T TIGR00900         8 QLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL   87 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3333444444445555555556665544433   3445777889999999999999999999888777766665554210


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhH
Q 045196          121 NNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFL  198 (255)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~  198 (255)
                           +..+.+..++..++.+++.+...+...++++|.+|+++|+++.++.+....+|.+++|.+.+.  ...+++..++
T Consensus        88 -----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~  162 (365)
T TIGR00900        88 -----GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW  162 (365)
T ss_pred             -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                 112566677777777777777888899999999999999999999999999999999998874  3456666777


Q ss_pred             HHHHHHHHHHHHHHHh
Q 045196          199 VFGALSIFSGVLSLWL  214 (255)
Q Consensus       199 ~~~~~~~~~~~~~~~~  214 (255)
                      +.++..+++.+..+.+
T Consensus       163 ~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       163 VDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            6666555554444433

>TIGR00895 2A0115 benzoate transport

Probab=99.65  E-value=9.2e-15  Score=119.22  Aligned_cols=151  Identities=17%  Similarity=0.107  Sum_probs=112.8

Q ss_pred             eeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHH
Q 045196           58 IQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQL  134 (255)
Q Consensus        58 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (255)
                      .+.+.+.++.+.....   ....++.+++.++.|+++||+|||+.+..+.++.+++.++....          .+.+..+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  109 (398)
T TIGR00895        40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA----------TNVTQLL  109 (398)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc----------cchHHHH
Confidence            3445556666654433   33445778889999999999999999999988887777766655          4566666


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHH-H
Q 045196          135 IIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVL-S  211 (255)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~  211 (255)
                      +..++.+++.+...+...+++.|.+|++.|+++.++......+|..++|.+.+.  ...+++..+++.+++.++..++ .
T Consensus       110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  189 (398)
T TIGR00895       110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM  189 (398)
T ss_pred             HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence            667777777777788999999999999999999999999999999999988873  3446667777765555544443 3


Q ss_pred             HHhccCC
Q 045196          212 LWLPETK  218 (255)
Q Consensus       212 ~~~~e~~  218 (255)
                      +++||+.
T Consensus       190 ~~~~~~~  196 (398)
T TIGR00895       190 RFLPESI  196 (398)
T ss_pred             HhCCCCC
Confidence            4567654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.65  E-value=1e-14  Score=114.91  Aligned_cols=171  Identities=17%  Similarity=0.121  Sum_probs=118.3

Q ss_pred             hhcChhHHHHHHHHHHHHHHHHHHhhheeee-----ecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhc--chhHHH
Q 045196           31 LWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN-----VGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFT--NRRLLL  100 (255)
Q Consensus        31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~--grr~~l  100 (255)
                      +++||.    ++..++..++..+.-|++..|     .+..+.+...+...   .=+++++|++++||++||+  |||...
T Consensus       248 VL~Nk~----iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~  323 (448)
T COG2271         248 VLKNKL----IWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM  323 (448)
T ss_pred             HHcChH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence            456665    445555555554444444433     34456655444333   3458899999999999996  788766


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHH-hh
Q 045196          101 SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML-GA  179 (255)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~  179 (255)
                      .+.+.+....+++..+..       ++.+.++..++.++.++...+..-+......|..|++.-|++.|+...++.+ |+
T Consensus       324 ~~i~~~~i~~~~~~~w~~-------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga  396 (448)
T COG2271         324 ALIFMLLITASLVLYWLA-------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA  396 (448)
T ss_pred             HHHHHHHHHHHHHHHHcC-------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH
Confidence            555554444444444432       2345567777778888888888788889999999999999999999999998 77


Q ss_pred             hhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196          180 SVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       180 ~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  212 (255)
                      ..+....++  +..+|...|.+..+.++++.++..
T Consensus       397 ~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         397 ALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             HhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence            777777763  345788888888877777766543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.64  E-value=3.1e-14  Score=120.02  Aligned_cols=204  Identities=17%  Similarity=0.158  Sum_probs=136.5

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhhe-eee----ecccCch-h-HHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGI-QLN----VGNLNFN-L-YFSVALNALMEIPAVVIGTVLLSFTNRRLL   99 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~l~dr~grr~~   99 (255)
                      .++++++ +..++++.+.+....++.+..+.. .+|    ++..+.. . .....+.++..+++.+++.++.||+|||++
T Consensus       283 ~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l  361 (513)
T KOG0254|consen  283 SWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKL  361 (513)
T ss_pred             cHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            4667776 555777777777776665443222 222    3333433 2 556667778888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCC--CCCCCchHHHH-HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH
Q 045196          100 LSRSAYVAGSASILCTLFSNNNNNK--GKGGGSWPQLI-IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM  176 (255)
Q Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  176 (255)
                      ++.+...+.++.++++.......+.  ......+..++ ..+....+..+..++.|.+.+|++|.+.|+++.++....++
T Consensus       362 ll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~  441 (513)
T KOG0254|consen  362 LLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNW  441 (513)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHH
Confidence            9999999999888777654322211  11122333333 33333444556678999999999999999999999999998


Q ss_pred             HhhhhhhhHHHh-hhc-CCCchhHHHHHHHHHHHH--HHHHhccCCCCCchHhHHhhhh
Q 045196          177 LGASVSPLLVVV-GRM-SPSLSFLVFGALSIFSGV--LSLWLPETKNAPLYETLKQQGE  231 (255)
Q Consensus       177 ~g~~~~p~~~~~-~~~-~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~  231 (255)
                      +.+++....... ... +....|..+++.+.+..+  ..+++|||+++++++..+..++
T Consensus       442 ~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  442 LWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            887655444332 222 235667777777666655  3457799999998887655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.63  E-value=1.9e-14  Score=117.71  Aligned_cols=149  Identities=17%  Similarity=0.160  Sum_probs=109.9

Q ss_pred             eeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+.++++.+.....   .+..++..++.++.|+++||+|||+++.++.++.++..++..+.          .+.+..++.
T Consensus        37 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~  106 (405)
T TIGR00891        37 EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA----------PGYITMFIA  106 (405)
T ss_pred             HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHH
Confidence            33455566544433   33445778899999999999999999999988888887777665          466777777


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcC--CCchhHHHHHHHHHHHHHHH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMS--PSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~  212 (255)
                      .++.+++.+...+...+++.|.+|+++|+++.++.+....+|.+++|.+.+.  ...+  |+..+.+.++..++..+...
T Consensus       107 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~  186 (405)
T TIGR00891       107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRK  186 (405)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            7888887777888889999999999999999999999999999999988763  2222  55556554444444443344


Q ss_pred             HhccCC
Q 045196          213 WLPETK  218 (255)
Q Consensus       213 ~~~e~~  218 (255)
                      .+||++
T Consensus       187 ~~~~~~  192 (405)
T TIGR00891       187 NIPEAE  192 (405)
T ss_pred             hCCCCh
Confidence            567654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.63  E-value=1.1e-14  Score=120.40  Aligned_cols=150  Identities=13%  Similarity=0.131  Sum_probs=113.6

Q ss_pred             eeeeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHH
Q 045196           58 IQLNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQL  134 (255)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (255)
                      .+.+.++++.+......+   ..++..++.++.|+++||+|||+++.++.++.+++.++..+.          ++.+.++
T Consensus        46 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~  115 (434)
T PRK11663         46 MPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS----------SSLWAFA  115 (434)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH----------hHHHHHH
Confidence            345556677765554433   345777899999999999999999999999988888777666          4566666


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHH-H
Q 045196          135 IIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVL-S  211 (255)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~  211 (255)
                      +..++.+++.+...+....++.|.+|+++|++++++.+....+|+.++|.+.+.  ...+|++.|++.+++.++..+. .
T Consensus       116 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~  195 (434)
T PRK11663        116 LLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLC  195 (434)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence            666666666676778888999999999999999999999999999999988773  3456777787777665544433 3


Q ss_pred             HHhccC
Q 045196          212 LWLPET  217 (255)
Q Consensus       212 ~~~~e~  217 (255)
                      +++||+
T Consensus       196 ~~~~~~  201 (434)
T PRK11663        196 WRLRDK  201 (434)
T ss_pred             HHcCCC
Confidence            455654

>PRK10054 putative transporter; Provisional

Probab=99.62  E-value=7e-14  Score=114.20  Aligned_cols=161  Identities=14%  Similarity=0.091  Sum_probs=112.8

Q ss_pred             HHHHHHHhhheeeee-cccCchhHHHHHHH---HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCC
Q 045196           48 GFGVGFVYYGIQLNV-GNLNFNLYFSVALN---ALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNN  123 (255)
Q Consensus        48 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~  123 (255)
                      .+........++.++ +.+|.+......+.   .+..+++.++.|+++||+|||+++.++.++.++..+.+.+.      
T Consensus        20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~------   93 (395)
T PRK10054         20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV------   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH------
Confidence            333333333333333 45677665554443   35667788999999999999999998888877777666665      


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hhcCCCchhHHHHH
Q 045196          124 KGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GRMSPSLSFLVFGA  202 (255)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~~~~~~~~~~~~~  202 (255)
                          ++.+..++...+.+...+...+....+..|.+|++.|+++.++.+...++|.+++|.+.++ ...++...|.+.++
T Consensus        94 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~  169 (395)
T PRK10054         94 ----NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAI  169 (395)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence                3455444444444444445567788899999999999999999999999999999998884 34567778887777


Q ss_pred             HHHHHHHHH-HHhccCC
Q 045196          203 LSIFSGVLS-LWLPETK  218 (255)
Q Consensus       203 ~~~~~~~~~-~~~~e~~  218 (255)
                      +.+++.+.. +++|+++
T Consensus       170 ~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        170 CSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            776665444 3456543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.62  E-value=5.8e-15  Score=116.29  Aligned_cols=153  Identities=12%  Similarity=0.090  Sum_probs=124.1

Q ss_pred             eeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHH
Q 045196           59 QLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLI  135 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
                      +...++.+.+.....   ....+..-++.++.|.++||.+.|..+.+++++++++.+++.+.          ++.+.+.+
T Consensus        53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs----------~s~~~~~~  122 (448)
T COG2271          53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS----------PSLFLFAV  122 (448)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh----------hHHHHHHH
Confidence            344445556654444   34456777899999999999999999999999999999999987          47778888


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHH--Hh--hhcCCCchhHHHHHHHHHHHHHH
Q 045196          136 IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLV--VV--GRMSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      +.++.+++.+..+|.+...+...+|.++||+..++-++..++|+.+.|.+.  +.  .+.+++..|++.++++++..++.
T Consensus       123 l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~  202 (448)
T COG2271         123 LWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALIL  202 (448)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999888887  53  34478889999998888776665


Q ss_pred             H-Hh---ccCCCCC
Q 045196          212 L-WL---PETKNAP  221 (255)
Q Consensus       212 ~-~~---~e~~~~~  221 (255)
                      + .+   |++.+.+
T Consensus       203 ~~~~rd~Pqs~GLP  216 (448)
T COG2271         203 LFLLRDRPQSEGLP  216 (448)
T ss_pred             HHHhCCCccccCCC
Confidence            4 44   4444444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.61  E-value=7.9e-14  Score=113.87  Aligned_cols=148  Identities=14%  Similarity=0.074  Sum_probs=114.8

Q ss_pred             eecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           61 NVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        61 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      +.++++.+......   ...++..++.++.|+++||+|||+++..+.++.++..++..+.          ++.+..++..
T Consensus        46 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r  115 (394)
T PRK10213         46 MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA----------NSFSLLLIGR  115 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH----------ChHHHHHHHH
Confidence            44566666554433   3455777889999999999999999999999998887777665          5677888888


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH-Hh
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL-WL  214 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~  214 (255)
                      ++.+++.+...+....+++|.+|+++|+.+.++......++..++|.+.+.  ...+|+..|++.+++++++.+... ..
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~  195 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSL  195 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            888888888888999999999999999999999999999999999998874  334677777777666655544333 35


Q ss_pred             ccCC
Q 045196          215 PETK  218 (255)
Q Consensus       215 ~e~~  218 (255)
                      ||++
T Consensus       196 p~~~  199 (394)
T PRK10213        196 PSLP  199 (394)
T ss_pred             CCCC
Confidence            6643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.61  E-value=7.9e-14  Score=113.87  Aligned_cols=152  Identities=18%  Similarity=0.123  Sum_probs=111.8

Q ss_pred             eeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHH
Q 045196           58 IQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQL  134 (255)
Q Consensus        58 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (255)
                      .+.+..+++.+.....   ....++..++.++.|+++||+|||+.++.+..+..+..+.....          ++.+..+
T Consensus        26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----------~~~~~~~   95 (392)
T PRK10473         26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----------ETSSLFL   95 (392)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh----------CcHHHHH
Confidence            3444555666554443   33345667788999999999999999999988888777776655          3555556


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-
Q 045196          135 IIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-  211 (255)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-  211 (255)
                      +..++.+.+.+...+..+.++.|.+|+++|+++.++.+....++..++|.+.+.  ...++...+++.+++.++..++. 
T Consensus        96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473         96 AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence            666666766666777889999999999999999999999999999999988774  33456666777776666655543 


Q ss_pred             HHhccCCC
Q 045196          212 LWLPETKN  219 (255)
Q Consensus       212 ~~~~e~~~  219 (255)
                      +++||+++
T Consensus       176 ~~~~~~~~  183 (392)
T PRK10473        176 FILKETRP  183 (392)
T ss_pred             HHcCCCCC
Confidence            45677643

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.61  E-value=7.8e-14  Score=116.42  Aligned_cols=176  Identities=11%  Similarity=-0.039  Sum_probs=101.8

Q ss_pred             hhcChhHHHHHHHHHHHHHHH-HHHhhheeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 045196           31 LWGTKWAAKRLIMVMTAGFGV-GFVYYGIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYV  106 (255)
Q Consensus        31 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~  106 (255)
                      +++++..+...+..++..... ....+...+..+.+|.+.....   ....++.+++.+++|+++||+|||+.+.....+
T Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~  333 (467)
T PRK09556        254 VLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL  333 (467)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            567766444333332222222 1222222233345666654433   334457788999999999999999876655443


Q ss_pred             HHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHH-hhhhhhhH
Q 045196          107 AGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML-GASVSPLL  185 (255)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~p~~  185 (255)
                      ..+.........        ..+.+...+..++.+++..+.......+..|.+|++.|+++.|+.+..+++ |++++|.+
T Consensus       334 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~  405 (467)
T PRK09556        334 ALIIFTLGVYQH--------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG  405 (467)
T ss_pred             HHHHHHHHHHHh--------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh
Confidence            333222222221        123333333344444333333333446677999999999999999999997 66899998


Q ss_pred             HHh-hh-------------cCCCchhHHHHHHHHHHHHHHHHh
Q 045196          186 VVV-GR-------------MSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       186 ~~~-~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      .+. .+             .++...|.+.+++.+++.+..+++
T Consensus       406 ~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        406 LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            884 22             345556767666666665555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.61  E-value=4.1e-14  Score=116.45  Aligned_cols=190  Identities=12%  Similarity=-0.069  Sum_probs=119.2

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      .++.++++|..+...+..+..........+ .+.+..+ .+.+.....   ...+++.+++.++.+++.||.++++.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~  294 (417)
T PRK10489        216 GFRFLLASPVVGGIALLGGLLTMASAVRVL-YPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLL  294 (417)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHhHHHh-hHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHH
Confidence            355667777644433333322222222122 2333344 555543332   33456778889999999999887777777


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                      +..+.++..+++...          .+.+...+..++.+++.+...+...+++.|..|++.|+++.|+.+....+|..++
T Consensus       295 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g  364 (417)
T PRK10489        295 STLGSFLAVGLFGLM----------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIG  364 (417)
T ss_pred             HHHHHHHHHHHHHcc----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHH
Confidence            766665555544433          2334444455555555555556777899999999999999999999999999999


Q ss_pred             hhHHHh--hhcCCCchhHHHHHHHHHH-HHHHHHhccCCCCCchHhHH
Q 045196          183 PLLVVV--GRMSPSLSFLVFGALSIFS-GVLSLWLPETKNAPLYETLK  227 (255)
Q Consensus       183 p~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~  227 (255)
                      |.+.+.  ...+....++..+++.++. .+....+|++++++.+|.++
T Consensus       365 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        365 AALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            999984  3334555666666555444 44445668888776665543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.61  E-value=1.2e-14  Score=118.18  Aligned_cols=149  Identities=22%  Similarity=0.192  Sum_probs=115.3

Q ss_pred             eeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+.+.++.+....   .....++..++.++.|+++||+|||+.+.++.++.++..++..+.          .+.+..++.
T Consensus        19 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~   88 (399)
T TIGR00893        19 MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------GAYVSLYIL   88 (399)
T ss_pred             HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----------cCHHHHHHH
Confidence            3444556554433   334456778899999999999999999999988888888777776          466777777


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH-H
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL-W  213 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~  213 (255)
                      .++.+++.+...+....++.|.+|+++|+++.++......+|..++|.+.+.  ...++++.+.+.+++.++..+..+ .
T Consensus        89 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893        89 RVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhe
Confidence            8888888888888999999999999999999999999999999999998873  445677777777777666555443 3


Q ss_pred             hccCC
Q 045196          214 LPETK  218 (255)
Q Consensus       214 ~~e~~  218 (255)
                      .||++
T Consensus       169 ~~~~~  173 (399)
T TIGR00893       169 IPDPP  173 (399)
T ss_pred             ecCCC
Confidence            45543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.61  E-value=1.5e-14  Score=119.05  Aligned_cols=188  Identities=14%  Similarity=0.032  Sum_probs=126.0

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      .+++.+.+++.++..++..++..+...+.....+.+..+.+.+......   ...++.+++.++.|+++||+|||+++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489          8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            3455566677766555555555555555555555555665555544433   3446777889999999999999999888


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                      +..+.++..+.+......     ...+.+...+..++.+++.+...+...++++|.+|++.|+++.++.+....+|..++
T Consensus        88 ~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  162 (417)
T PRK10489         88 ARGTCGLGFIGLALNAFL-----PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVIS  162 (417)
T ss_pred             hHHHHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhH
Confidence            777666655544321100     113445555566666666565667778899999999999999999999999999999


Q ss_pred             hhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          183 PLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       183 p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      |.+.+.  ...++.+.+.+.++..+++.+..+.+|+++
T Consensus       163 ~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (417)
T PRK10489        163 PALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALP  200 (417)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            998873  334566667766666666655556667653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.61  E-value=3.9e-14  Score=114.68  Aligned_cols=173  Identities=11%  Similarity=0.020  Sum_probs=110.7

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHH---HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYF---SVALNALMEIPAVVIGTVLLSFTNRRLLLSRS  103 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~  103 (255)
                      +.++.++++..+......+...+.........+.+.++.+.+...   ...+..++.+++.++.|+++||+|||+.+.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  276 (377)
T TIGR00890       197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIV  276 (377)
T ss_pred             hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            456778877654333322222222211111112233445544332   23445567788999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhh
Q 045196          104 AYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSP  183 (255)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p  183 (255)
                      ..+..+..+++....        ....+..+...++.+++.+...+....+++|.+|+++|+++.|+.+....+|+.++|
T Consensus       277 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~  348 (377)
T TIGR00890       277 FGISAVGMAAMLFIP--------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGG  348 (377)
T ss_pred             HHHHHHHHHHHHHcc--------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence            887777766655441        112222333334445555555567778899999999999999999999999999999


Q ss_pred             hHHHh--hhcCCCchhHHHHHHHHHH
Q 045196          184 LLVVV--GRMSPSLSFLVFGALSIFS  207 (255)
Q Consensus       184 ~~~~~--~~~~~~~~~~~~~~~~~~~  207 (255)
                      .+.+.  ...++...+.+.+++.+++
T Consensus       349 ~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       349 LIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            98884  3445666677666665554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.60  E-value=4.7e-14  Score=113.21  Aligned_cols=147  Identities=20%  Similarity=0.188  Sum_probs=113.3

Q ss_pred             eeecccCchhHH---HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYF---SVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+.++++.+...   ......++..++.++.|+++||+|||+++.++.++.++..++..+.          .+.+..++.
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~   91 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA----------SNFWLLLIA   91 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH----------CCHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh----------hhHHHHhhh
Confidence            445566655433   3334456778899999999999999999999998888885555543          355677778


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LW  213 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~  213 (255)
                      .++.+++.+...+....++.|.+|+++|+++.++......+|.+++|.+.+.  ...+++..+++.+++.++..++. ++
T Consensus        92 ~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~  171 (352)
T PF07690_consen   92 RFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILF  171 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhh
Confidence            8888888888889999999999999999999999999999999999999884  34567788888888888776643 34


Q ss_pred             hcc
Q 045196          214 LPE  216 (255)
Q Consensus       214 ~~e  216 (255)
                      +++
T Consensus       172 ~~~  174 (352)
T PF07690_consen  172 LPE  174 (352)
T ss_dssp             C--
T ss_pred             hhh
Confidence            443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.60  E-value=1.4e-13  Score=112.42  Aligned_cols=148  Identities=17%  Similarity=0.068  Sum_probs=114.3

Q ss_pred             eeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+.++++.+......+   ..++..++.+..|+++||+|||+++..+..+.++..+...+.          ++.+..++.
T Consensus        34 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~  103 (390)
T PRK03545         34 DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA----------WNFTVLLIS  103 (390)
T ss_pred             HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHH
Confidence            3455667766555444   334556778889999999999999999999888888877776          467777777


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH-H
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL-W  213 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~  213 (255)
                      .++.+.+.+...+...+++.|.+|+++|+++.|+......+|..++|.+.+.  ...+|++.|++.++++++..+..+ .
T Consensus       104 r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~  183 (390)
T PRK03545        104 RIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777776666678888999999999999999999999999999999998874  345777888888877766655443 4


Q ss_pred             hccC
Q 045196          214 LPET  217 (255)
Q Consensus       214 ~~e~  217 (255)
                      +||.
T Consensus       184 ~~~~  187 (390)
T PRK03545        184 LPLL  187 (390)
T ss_pred             CCCC
Confidence            5654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.60  E-value=3.9e-14  Score=118.23  Aligned_cols=139  Identities=15%  Similarity=0.044  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           73 VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      .....++..++.++.|+++||+|||++++++.++..+..++..+..       ...+.+..++..++.+++.+...+...
T Consensus        77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~r~l~G~~~~~~~~~~~  149 (481)
T TIGR00879        77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA-------FALSVEMLIVGRVLLGIGVGIASALVP  149 (481)
T ss_pred             HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-------cccchHHHHHHHHHHHhhhhHHHhHHH
Confidence            3445567788999999999999999999999888888777765542       112334667777888887888888899


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhhhhHH---Hh--hhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLV---VV--GRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      .++.|.+|++.|+++.++.+....+|.+++|.+.   ..  ...+|+..|++.+...++..+..+++||+.
T Consensus       150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~  220 (481)
T TIGR00879       150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESP  220 (481)
T ss_pred             HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999999999999999999999988   43  334566677776555555555556677763

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.60  E-value=7.8e-14  Score=113.44  Aligned_cols=150  Identities=20%  Similarity=0.123  Sum_probs=113.9

Q ss_pred             eeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+.++++.+......   ...++..++.++.|+++||+|||+.+..+..+.++..+.....          ++.+..++.
T Consensus        30 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~   99 (385)
T TIGR00710        30 EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS----------NNIETLLVL   99 (385)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----------ccHHHHHHH
Confidence            344566666544433   3445778899999999999999999999988888887777665          456666677


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LW  213 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~  213 (255)
                      .++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.  ...+++..+++.+++.++..+.. +.
T Consensus       100 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       100 RFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             HHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777777778889999999999999999999999999999999998874  33456667777776666655544 34


Q ss_pred             hccCCC
Q 045196          214 LPETKN  219 (255)
Q Consensus       214 ~~e~~~  219 (255)
                      .||+++
T Consensus       180 ~~~~~~  185 (385)
T TIGR00710       180 LPETLP  185 (385)
T ss_pred             CCCCCC
Confidence            566544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.60  E-value=9.8e-14  Score=116.24  Aligned_cols=148  Identities=14%  Similarity=0.182  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHh-hhhhh
Q 045196           72 SVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAAS-TAFDV  150 (255)
Q Consensus        72 ~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  150 (255)
                      .....++..+++.+++++++||+|||++++.+.++++++.+++.....      ............++.+.+.+ ...+.
T Consensus       311 ~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (479)
T PRK10077        311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------TQAPGIVALLSMLFYVAAFAMSWGPV  384 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHHhccccch
Confidence            334456778889999999999999999999999888887776654320      00111122222222222222 23467


Q ss_pred             hhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--------hhcCCCchhHHHHHHHHHHHHHHH-HhccCCCCC
Q 045196          151 MYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--------GRMSPSLSFLVFGALSIFSGVLSL-WLPETKNAP  221 (255)
Q Consensus       151 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~  221 (255)
                      .+.+++|.+|++.|+++.|+.+..+++++++++.+.+.        ...++...|+++++.+++++++.+ +.||+++++
T Consensus       385 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  464 (479)
T PRK10077        385 CWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  464 (479)
T ss_pred             hHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence            89999999999999999999999999999888665542        134556677777777776666554 568998876


Q ss_pred             chHh
Q 045196          222 LYET  225 (255)
Q Consensus       222 ~~~~  225 (255)
                      .+|.
T Consensus       465 ~~~~  468 (479)
T PRK10077        465 LEEM  468 (479)
T ss_pred             HHHH
Confidence            6544

>TIGR00898 2A0119 cation transport protein

Probab=99.59  E-value=3.8e-14  Score=119.51  Aligned_cols=135  Identities=16%  Similarity=0.099  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           73 VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      ..+..++.+++.++.|+++||+|||++++++.++.+++.++..+.          .+.+.+++..++.+++.++..+...
T Consensus       133 ~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~r~l~G~~~~~~~~~~~  202 (505)
T TIGR00898       133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS----------PNYTVFLVFRLLVGMGIGGIWVQAV  202 (505)
T ss_pred             HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc----------ccHHHHHHHHHHHHhhccchHHHHH
Confidence            344556888899999999999999999999998888888777766          4677778888888888888889999


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      +++.|.+|++.|+.+.++......+|.+++|.+...... |++.+++.++..++..+..+++||+.
T Consensus       203 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-wr~~~~~~~i~~~~~~~~~~~~~esp  267 (505)
T TIGR00898       203 VLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-WRWLQLAVSLPTFLFFLLSWFVPESP  267 (505)
T ss_pred             HHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            999999999999999999988888888888887764322 66777777777776666667778864

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.59  E-value=5.5e-14  Score=113.50  Aligned_cols=178  Identities=11%  Similarity=0.011  Sum_probs=106.8

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHH-HHHhhheeeeecccCchhHHHHHHHHHHHHHHHHHHHHHHhhcchh---HHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGV-GFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRR---LLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr---~~l~~  102 (255)
                      +++++++++..+...+..++..... .+..|. +.++.+.+.+.. ......+..+.+.+..++++||..||   +....
T Consensus       184 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl-p~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~  261 (368)
T TIGR00903       184 EFGALAGRKDLWIIGAILGFGVALFDNLAIWL-EAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIR  261 (368)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHH
Confidence            4778888887544333333222222 122222 223334455433 33444455556666778899987653   33222


Q ss_pred             -HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          103 -SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       103 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                       ...+.++........          .+.+..+.+..+.+++.....+..+++.+|.+|++.|+++.|+.+..++++++.
T Consensus       262 ~~~~~~a~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~  331 (368)
T TIGR00903       262 AAALLIAAFFLALAFE----------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA  331 (368)
T ss_pred             HHHHHHHHHHHHHHHc----------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH
Confidence             333333333333322          223334444555555666666778899999999999999999999999999999


Q ss_pred             hhhHHHhhhcCCCchhHHHHHHHHHHHHHHHHhcc
Q 045196          182 SPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPE  216 (255)
Q Consensus       182 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  216 (255)
                      +|.+.+....+....|.++++..+++.+..+.+++
T Consensus       332 ~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       332 LALAAMLFISSAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99888743334455677777777777666554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.59  E-value=2e-13  Score=114.16  Aligned_cols=145  Identities=17%  Similarity=0.067  Sum_probs=100.6

Q ss_pred             eecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           61 NVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        61 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      +.++++.+.....   ....++..++.++.|+++||+|||+++.++.++.++..++..+.          .+.+.+++..
T Consensus        62 l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----------~s~~~l~~~r  131 (476)
T PLN00028         62 IRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV----------SSATGFIAVR  131 (476)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh----------cCHHHHHHHH
Confidence            3445666544433   23345677788999999999999999998888888777766665          3555555556


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-----hh------cCCCchhHHHHHHHHH
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-----GR------MSPSLSFLVFGALSIF  206 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-----~~------~~~~~~~~~~~~~~~~  206 (255)
                      ++.+++.+.. .....+++|.+|++.|+++.|+.+..+.+|+.+++.+...     ..      .+|++.|++.+++.++
T Consensus       132 ~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~  210 (476)
T PLN00028        132 FFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHII  210 (476)
T ss_pred             HHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Confidence            6666555443 3455678999999999999999987777777666554431     11      3577888888887776


Q ss_pred             HHHHHHHhcc
Q 045196          207 SGVLSLWLPE  216 (255)
Q Consensus       207 ~~~~~~~~~e  216 (255)
                      ..++.+++++
T Consensus       211 ~~l~~~~~~~  220 (476)
T PLN00028        211 MGILVLTLGQ  220 (476)
T ss_pred             HHHHHHHHcC
Confidence            6655555543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.59  E-value=7.5e-14  Score=113.95  Aligned_cols=147  Identities=11%  Similarity=0.072  Sum_probs=102.8

Q ss_pred             eeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHH
Q 045196           59 QLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLI  135 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
                      +.+..+++.+.....   ....+...+..++.|+++||+|||++++++..+.++..+++.+..          +.   ++
T Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~----------~~---~~   93 (393)
T PRK11195         27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI----------HP---LL   93 (393)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH----------HH---HH
Confidence            334455555443332   334457778899999999999999999999988877766655441          21   44


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          136 IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      ..++.+.+.+...|...++++|++|+++|+++.++......++.+++|.+.++ ....+...+.+.+.+.+++.+..+.+
T Consensus        94 ~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l  173 (393)
T PRK11195         94 AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFI  173 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55667777888889999999999999999999999999999999999999884 22223333333333333333334556


Q ss_pred             ccCC
Q 045196          215 PETK  218 (255)
Q Consensus       215 ~e~~  218 (255)
                      ||.+
T Consensus       174 ~~~~  177 (393)
T PRK11195        174 PRLG  177 (393)
T ss_pred             CCCc
Confidence            7654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.58  E-value=7e-14  Score=115.38  Aligned_cols=136  Identities=15%  Similarity=0.129  Sum_probs=105.0

Q ss_pred             hhheeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCch
Q 045196           55 YYGIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSW  131 (255)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (255)
                      .+..+.+.++++.+.....   .+..++..++.++.|+++||+|||+++.++.++.+++.++..+.          ++.+
T Consensus        38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------~~~~  107 (426)
T PRK12307         38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA----------SGVI  107 (426)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------hHHH
Confidence            3333444456666544333   33456778899999999999999999999999988888777776          4667


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHH
Q 045196          132 PQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVF  200 (255)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~  200 (255)
                      ..++..++.+++.+...+....++.|.+|++.|+++.++......+|.+++|.+.+.  ...+|+..+++.
T Consensus       108 ~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~  178 (426)
T PRK12307        108 MLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG  178 (426)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence            777788888887777888899999999999999999999999888999988887763  234565666553

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.58  E-value=1e-13  Score=113.76  Aligned_cols=149  Identities=18%  Similarity=0.180  Sum_probs=109.9

Q ss_pred             eeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+.++++.+.....   ....++..++.++.|+++||+|||+++..+.++..+..++..+.          .+.+..++.
T Consensus        40 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  109 (406)
T PRK11551         40 RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA----------WDFPSLLVA  109 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------ccHHHHHHH
Confidence            34455666554433   33446778899999999999999999999988877777666655          466666777


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LW  213 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~  213 (255)
                      .++.+++.+...+...+++.|.+|++.|+++.++.+....+|+.++|.+...  ...+++..+++.+++.++..++. ++
T Consensus       110 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (406)
T PRK11551        110 RLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRW  189 (406)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777877777778889999999999999999999999999999999887763  22345556666665554444333 45


Q ss_pred             hccCC
Q 045196          214 LPETK  218 (255)
Q Consensus       214 ~~e~~  218 (255)
                      +||+.
T Consensus       190 l~~~~  194 (406)
T PRK11551        190 LPESR  194 (406)
T ss_pred             CCCCh
Confidence            67753

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.58  E-value=2.9e-13  Score=111.96  Aligned_cols=186  Identities=12%  Similarity=0.096  Sum_probs=98.4

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeee-----ecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchh
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN-----VGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRR   97 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr   97 (255)
                      .++++++++++.+...+..   .+.....+|....|     .+..+.+.....   .+..++..++.++.|+++||+|||
T Consensus       233 ~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr  309 (432)
T PRK10406        233 GSLKGLWRNRRAFIMVLGF---TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR  309 (432)
T ss_pred             ccHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            3578888876533222221   11112222222222     233455443322   223345567778889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHH
Q 045196           98 LLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML  177 (255)
Q Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  177 (255)
                      +.+.++..+.++....+.....      ...+.+..+.+..+..+..+...+..+.+.+|.+|++.|+++.|+.+..+++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~  383 (432)
T PRK10406        310 TSMLCFGSLAALFTVPILSALQ------NVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANA  383 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHH
Confidence            9887766554433332221110      0112222222222233333333456778899999999999999999988775


Q ss_pred             -hhhhhhhHHHh-hhcCCCc-hhHHHHHHHHHHHHHHHHhccCCCCC
Q 045196          178 -GASVSPLLVVV-GRMSPSL-SFLVFGALSIFSGVLSLWLPETKNAP  221 (255)
Q Consensus       178 -g~~~~p~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (255)
                       ++...|.+.++ ...+.+. .++..++..+++.+..+++ ++++++
T Consensus       384 ~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l-~~~~~~  429 (432)
T PRK10406        384 LFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML-HRKGKG  429 (432)
T ss_pred             HHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-hhcccc
Confidence             34457776663 2233233 3444445555554444443 444443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.58  E-value=5.4e-14  Score=117.78  Aligned_cols=145  Identities=18%  Similarity=0.095  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCCCchHHHHHHHHHHHHHhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNN--KGKGGGSWPQLIIEGVGFMAASTAFDVM  151 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (255)
                      ....++..++.++.|+++||+|||++++++..+.+++.+...+.......  .++....+.+++.+++.+++.++..+..
T Consensus        62 s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~  141 (479)
T PRK10077         62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLS  141 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHH
Confidence            34456888899999999999999999999988877776655542100000  0000122355677888888888888999


Q ss_pred             hhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh----------hhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          152 YIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV----------GRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       152 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      .++++|.+|+++|+.++++......+|.++++.+...          ...+|++.|++.++..++..+..+++||+.
T Consensus       142 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~  218 (479)
T PRK10077        142 PMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETP  218 (479)
T ss_pred             HHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9999999999999999999998888888887765431          124567777777666666655556778874

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.58  E-value=1.2e-13  Score=116.12  Aligned_cols=149  Identities=19%  Similarity=0.201  Sum_probs=107.6

Q ss_pred             eeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHH
Q 045196           59 QLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLI  135 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
                      +.+..+++.+.....   ....++..++.++.|+++||+|||+.+.++.++.++..+++.+.          .+.+..++
T Consensus        44 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~  113 (496)
T PRK03893         44 TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA----------PGYWTLFI  113 (496)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHH
Confidence            344455666554433   33445777889999999999999999999988888887777765          46666777


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHH
Q 045196          136 IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLW  213 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  213 (255)
                      ..++.+++.+...+....++.|.+|++.|+++.++......+|..++|.+.+.  ...+|+..|++.+...++..+....
T Consensus       114 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  193 (496)
T PRK03893        114 ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKN  193 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            77777877777778889999999999999999999999999999999988874  3334555555433333222222234


Q ss_pred             hccC
Q 045196          214 LPET  217 (255)
Q Consensus       214 ~~e~  217 (255)
                      +||+
T Consensus       194 ~p~~  197 (496)
T PRK03893        194 LPEA  197 (496)
T ss_pred             CCCc
Confidence            4554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.58  E-value=3.8e-14  Score=119.88  Aligned_cols=138  Identities=17%  Similarity=0.103  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhh
Q 045196           71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDV  150 (255)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (255)
                      ....+..++..+|++++|.++||+|||++++++.++..++.++.++.          .+.+..++++++.+++.++...+
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a----------~~~~~~~~~Rfl~G~~~~~~~~~  191 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA----------PNYWMFLIFRFLSGFFGSGPLTV  191 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh----------CcHHHHHHHHHHHHhhccchhHH
Confidence            34455667889999999999999999999999999999999888887          68889999999999999999999


Q ss_pred             hhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCchhHHHHHHHHHHHHHHHHhccCCC
Q 045196          151 MYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETKN  219 (255)
Q Consensus       151 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (255)
                      .+.+..|+++++.|+.+..+ ......++.++|...++...+|++.+++..+..++..++.++.||+++
T Consensus       192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~r  259 (521)
T KOG0255|consen  192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPR  259 (521)
T ss_pred             hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChH
Confidence            99999999999999999999 777778888887777755457778888877777766665445557654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.58  E-value=1.2e-13  Score=113.40  Aligned_cols=147  Identities=15%  Similarity=0.089  Sum_probs=111.1

Q ss_pred             cccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHH
Q 045196           63 GNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGV  139 (255)
Q Consensus        63 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (255)
                      ++++.+.....   .+..++..++.++.|+++||+|||++++.+..+.+++.++....          ++.+.+++..++
T Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------~~~~~l~~~r~l  113 (413)
T PRK15403         44 RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT----------TSMTQFLIARFI  113 (413)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHH
Confidence            34555543333   33345777889999999999999999999988888877777665          466677777777


Q ss_pred             HHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HHhcc
Q 045196          140 GFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LWLPE  216 (255)
Q Consensus       140 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~e  216 (255)
                      .+++.+...+..++++.|.+|++.|++++++.+....++..++|.+.+.  ...+|++.|++.+++.+++.+.. +.+||
T Consensus       114 ~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        114 QGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7776655556778889999999999999999999999999999988873  23467778888877777666543 45788


Q ss_pred             CCC
Q 045196          217 TKN  219 (255)
Q Consensus       217 ~~~  219 (255)
                      +++
T Consensus       194 ~~~  196 (413)
T PRK15403        194 TVK  196 (413)
T ss_pred             Ccc
Confidence            654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.57  E-value=1.5e-13  Score=114.27  Aligned_cols=153  Identities=10%  Similarity=-0.034  Sum_probs=103.8

Q ss_pred             eeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHH
Q 045196           59 QLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLI  135 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
                      +.+.+. +.+......   ...++..++.++.|+++||+|||++++++.++.++..+++.+...      ...+.+..++
T Consensus        53 p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~  125 (452)
T PRK11273         53 PYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW------ATSSIAVMFV  125 (452)
T ss_pred             HHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc------ccccHHHHHH
Confidence            333444 665544433   344577788999999999999999999999888887777665420      0123445555


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhh-hhhhHHH-h-hhcCCCchhHHHHHHHHHHHHH-H
Q 045196          136 IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGAS-VSPLLVV-V-GRMSPSLSFLVFGALSIFSGVL-S  211 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~-~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~  211 (255)
                      ..++.+++.+...+.....+.|.+|++.|+++.++.+....+|+. .+|.+.. . ...+|+..|++.++++++..++ .
T Consensus       126 ~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        126 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666676777888999999999999999888888764 4555432 2 2335667777777666655443 3


Q ss_pred             HHhccCC
Q 045196          212 LWLPETK  218 (255)
Q Consensus       212 ~~~~e~~  218 (255)
                      +++||+.
T Consensus       206 ~~~~~~~  212 (452)
T PRK11273        206 AMMRDTP  212 (452)
T ss_pred             HHccCCH
Confidence            5566643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.57  E-value=4.4e-13  Score=109.75  Aligned_cols=138  Identities=17%  Similarity=0.087  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYI  153 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (255)
                      ....++.+++.++.+++.||+|||+.+..+..+.++..+++...          ++.+..++..++.+++.+..++....
T Consensus       256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~G~~~~~~~~~~~~  325 (399)
T PRK05122        256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA----------PSPWMALIGAALTGFGFSLVFPALGV  325 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            34556778889999999999999999888877777666655544          34444555555666666666677677


Q ss_pred             hhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhccCCCCC
Q 045196          154 YCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLPETKNAP  221 (255)
Q Consensus       154 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (255)
                      ...|.+|++.|+++.++.+....+|..++|.+.+.  ...++...+.+.+++++++.++.++++++++++
T Consensus       326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (399)
T PRK05122        326 EAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA  395 (399)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            78899999999999999999999998888887773  334566677777777777766666666544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.57  E-value=3.1e-13  Score=110.01  Aligned_cols=151  Identities=14%  Similarity=0.087  Sum_probs=115.0

Q ss_pred             eeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHH
Q 045196           58 IQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQL  134 (255)
Q Consensus        58 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (255)
                      ++.+.+++|.+....   .....++..++.++.|+++||+|||+++.++..+.++..++..+.          ++.+..+
T Consensus        26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~----------~~~~~l~   95 (382)
T PRK10091         26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS----------SSYLMLA   95 (382)
T ss_pred             hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----------CcHHHHH
Confidence            344455666654443   334456888899999999999999999999999998888877776          4677777


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-
Q 045196          135 IIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-  211 (255)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-  211 (255)
                      +..++.+++.+...+....++.|.+|+++|+.+.++......++..++|.+.+.  ...+|++.|.+.+++.++..+.. 
T Consensus        96 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091         96 IGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            778888877776667778889999999999999999988888999998888764  33467777887777666554433 


Q ss_pred             HHhccCC
Q 045196          212 LWLPETK  218 (255)
Q Consensus       212 ~~~~e~~  218 (255)
                      +++||.+
T Consensus       176 ~~lp~~~  182 (382)
T PRK10091        176 FWVPDIR  182 (382)
T ss_pred             HhCCCCC
Confidence            4567754

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.57  E-value=4e-13  Score=109.95  Aligned_cols=164  Identities=13%  Similarity=0.075  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHhhheee-eecccCchhHHHHHHHHH---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc
Q 045196           44 VMTAGFGVGFVYYGIQL-NVGNLNFNLYFSVALNAL---MEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSN  119 (255)
Q Consensus        44 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~  119 (255)
                      .++..+.....+..++. +.+..|.+......+.++   ...+..++.|+++||+|||+++..+..+.++..+.+...  
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--   96 (400)
T PRK11646         19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--   96 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--
Confidence            33333443333333333 345667776666555543   445567889999999999999999999888888877665  


Q ss_pred             cCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hhcCCCchhH
Q 045196          120 NNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GRMSPSLSFL  198 (255)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~~~~~~~~~  198 (255)
                              ++.+..++..++.+++.+...+...+++.|.+|++.|+++.++.+....+|..++|.+.++ ...+++..|+
T Consensus        97 --------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~  168 (400)
T PRK11646         97 --------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCA  168 (400)
T ss_pred             --------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                    4566666666666766666667888999999999999999999999999999999998873 3455666777


Q ss_pred             HHHHHHHHHHHHH-HHhccC
Q 045196          199 VFGALSIFSGVLS-LWLPET  217 (255)
Q Consensus       199 ~~~~~~~~~~~~~-~~~~e~  217 (255)
                      +.+...+++.++. ++.||.
T Consensus       169 ~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        169 TGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHhCCcc
Confidence            7666655554433 445653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.56  E-value=6.2e-13  Score=110.59  Aligned_cols=176  Identities=16%  Similarity=0.009  Sum_probs=97.7

Q ss_pred             hhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhHHH---HHHHHHHHHHHHHHHHHHHhhc--chhHHHH-HH
Q 045196           31 LWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLYFS---VALNALMEIPAVVIGTVLLSFT--NRRLLLS-RS  103 (255)
Q Consensus        31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~--grr~~l~-~~  103 (255)
                      ++|++..|...+..++............+.++. ..+.+....   ..+..++.+++.++.|+++||+  |||.... ..
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~  328 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  328 (452)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence            556666544333333333332222222233343 345543333   2334567778999999999999  5554332 22


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh-h
Q 045196          104 AYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV-S  182 (255)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~-~  182 (255)
                      ..+..+..+.+....        ..+.+..++..+..+....+.......+..|.+|++.||++.|+.+....+|+.+ +
T Consensus       329 ~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g  400 (452)
T PRK11273        329 MTLVTIATIVYWLNP--------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA  400 (452)
T ss_pred             HHHHHHHHHHHHHhc--------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhh
Confidence            222222222222221        1222322222333333222222334456789999999999999999988888654 7


Q ss_pred             hhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          183 PLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       183 p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      |.+.+.  ...++...|.+.+++++++++....+
T Consensus       401 ~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        401 SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             hhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            888773  44567777888888777777665544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.56  E-value=1.6e-13  Score=115.11  Aligned_cols=156  Identities=17%  Similarity=0.207  Sum_probs=119.3

Q ss_pred             HHhhheeeeecccCchhH---HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 045196           53 FVYYGIQLNVGNLNFNLY---FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGG  129 (255)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (255)
                      ......+.+..+++.+..   .......++..++.++.|+++||+|||+.++++.++..+..++....          ++
T Consensus        20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~   89 (485)
T TIGR00711        20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA----------PN   89 (485)
T ss_pred             HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc----------CC
Confidence            334444555666666543   33344556788899999999999999999999998888887777655          46


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHH
Q 045196          130 SWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFS  207 (255)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~  207 (255)
                      .+..++..++.+++.+...+....++.|.+|++.|+++.++......+|..++|.+.++  ...+|++.|++.+.+.+++
T Consensus        90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~  169 (485)
T TIGR00711        90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIV  169 (485)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHH
Confidence            67777778888888788888999999999999999999999999999999999998874  3456777787777666665


Q ss_pred             HHHH-HHhccCC
Q 045196          208 GVLS-LWLPETK  218 (255)
Q Consensus       208 ~~~~-~~~~e~~  218 (255)
                      .++. +++||++
T Consensus       170 ~~~~~~~~~~~~  181 (485)
T TIGR00711       170 VVVAFFILPRDK  181 (485)
T ss_pred             HHHHHHHcCCcc
Confidence            5544 3456543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.56  E-value=1.3e-13  Score=115.02  Aligned_cols=164  Identities=17%  Similarity=0.173  Sum_probs=107.3

Q ss_pred             eeeecccCchh---HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchH-HH
Q 045196           59 QLNVGNLNFNL---YFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWP-QL  134 (255)
Q Consensus        59 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  134 (255)
                      +.+....|.+.   ........++.+++.++.++++||+|||+.+.++..+.+++.+++.+......+..+....+. ..
T Consensus       308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (481)
T TIGR00879       308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIV  387 (481)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHH
Confidence            33444555544   233344556778899999999999999999988877777666665532110000000001222 22


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196          135 IIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  212 (255)
                      ...+...++..+..+....++.|.+|++.|+++.++.+...++|++++|.+.+.  ...++...|++.+++++++.++.+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence            222222333333446777888999999999999999999999999999998873  344677778888888777766654


Q ss_pred             -HhccCCCCCc
Q 045196          213 -WLPETKNAPL  222 (255)
Q Consensus       213 -~~~e~~~~~~  222 (255)
                       +.||+++++.
T Consensus       468 ~~~~~~~~~~~  478 (481)
T TIGR00879       468 FFLPETKGRTL  478 (481)
T ss_pred             eecccCCCCCh
Confidence             5688776543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.56  E-value=4.6e-13  Score=108.55  Aligned_cols=178  Identities=12%  Similarity=0.077  Sum_probs=111.5

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeee-cccCchhHHHHHHH---HHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNV-GNLNFNLYFSVALN---ALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      +.++.+++++++......+..+..........+.+. ...+.+......+.   .+..+++.++.|++.||+|||+.+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  270 (375)
T TIGR00899       191 EVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLL  270 (375)
T ss_pred             hhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHH
Confidence            344566676644433333333332222222223232 34555544433332   23456677899999999999998887


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                      +.++..+........          ++.+..+...++.+++.+...+....+..|..|++ |+++.++.+...++|..++
T Consensus       271 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g  339 (375)
T TIGR00899       271 AALAGVAFYTGLAAD----------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIA  339 (375)
T ss_pred             HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHH
Confidence            766555444443333          24454445555556656666677788889998875 6699999999999999999


Q ss_pred             hhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhc
Q 045196          183 PLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLP  215 (255)
Q Consensus       183 p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
                      |.+.+.  ...++...+.+.+++.+++.++.++++
T Consensus       340 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       340 GSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence            999884  334566677777777777766655554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.56  E-value=8.4e-14  Score=116.37  Aligned_cols=142  Identities=15%  Similarity=0.099  Sum_probs=88.0

Q ss_pred             cccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhH-------HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchH
Q 045196           63 GNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRL-------LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWP  132 (255)
Q Consensus        63 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (255)
                      ...|.+.....   .+..++.+++.+++|+++||++||+       ...+...+.++..+++...          .+.+.
T Consensus       281 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~----------~~~~~  350 (476)
T PLN00028        281 DRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA----------NSLGA  350 (476)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc----------chHHH
Confidence            34566544433   3345677889999999999998752       2222222222222222211          23333


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh-hcCCCchhHHHHHHHHHHHHHH
Q 045196          133 QLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG-RMSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      .++..++.+++.....+..+++.+++.| +.|+++.|+.+..+.+|++++|.+.+.. ..++...|++.+++.+++.++.
T Consensus       351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        351 AIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHH
Confidence            3334444444444455667778888765 6799999999888888998888876532 2245667888888887777766


Q ss_pred             HHhc
Q 045196          212 LWLP  215 (255)
Q Consensus       212 ~~~~  215 (255)
                      ++++
T Consensus       430 ~~~~  433 (476)
T PLN00028        430 AFIH  433 (476)
T ss_pred             Hhee
Confidence            6553

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.55  E-value=4.6e-13  Score=110.57  Aligned_cols=154  Identities=7%  Similarity=-0.026  Sum_probs=94.5

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHH---HHhhheeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVG---FVYYGIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLL  100 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l  100 (255)
                      +++++++++.++..............   ......+.+....+.+.....   .+..++.+++.++.+++.||+|||+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  299 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF  299 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            56778887764433322222111111   111122334444555543332   334567788999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHH-HHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhh
Q 045196          101 SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGV-GFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGA  179 (255)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  179 (255)
                      ..+.++..+..+......         ......+....+ ..+...+..+..+.++.|.+|++.|+++.|+.+..+.+++
T Consensus       300 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~  370 (426)
T PRK12307        300 SIGLLMSFLFIFPLFRIP---------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSG  370 (426)
T ss_pred             HHHHHHHHHHHHHHHHHc---------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHH
Confidence            888777666555444331         122222211111 2222223345667788999999999999999999999999


Q ss_pred             hhhhhHHHhh
Q 045196          180 SVSPLLVVVG  189 (255)
Q Consensus       180 ~~~p~~~~~~  189 (255)
                      .++|.+.++.
T Consensus       371 ~~gp~~~g~l  380 (426)
T PRK12307        371 TFNSMAATWL  380 (426)
T ss_pred             HHHHHHHHHH
Confidence            9999998853

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.55  E-value=5.2e-13  Score=106.15  Aligned_cols=168  Identities=17%  Similarity=0.142  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhe----eeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 045196           38 AKRLIMVMTAGFGVGFVYYGI----QLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSA  110 (255)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~  110 (255)
                      +.+++...+..|+....-+..    +...++++.+....   ...++++..++.++...+.||+.||++++....+..++
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            444555555555554333333    33444566664443   34566788889999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--
Q 045196          111 SILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--  188 (255)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--  188 (255)
                      .++..+.          .+++.+++.+++.++..+..++...++..++.|+++|++++++......++.+++..+..+  
T Consensus        92 n~l~alA----------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig  161 (394)
T COG2814          92 NLLSALA----------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG  161 (394)
T ss_pred             HHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence            9999988          5889999999999999999999999999999999999999999999998888887776663  


Q ss_pred             hhcCCCchhHHHHHHHHHHHHHH-HHhc
Q 045196          189 GRMSPSLSFLVFGALSIFSGVLS-LWLP  215 (255)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~  215 (255)
                      +..+|+.+|+..+.+.+++.+.. ..+|
T Consensus       162 ~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         162 QLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            44679999999999988887765 4668

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.55  E-value=2.1e-13  Score=111.84  Aligned_cols=145  Identities=12%  Similarity=-0.028  Sum_probs=96.5

Q ss_pred             eeecccCchhHH---HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYF---SVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+..+.|.+...   .....+++.+++.++.|+++||+|||+.+..+.....+..+.+...          .+.+...+.
T Consensus       245 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  314 (406)
T PRK11551        245 SLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA----------PSFAGMLLA  314 (406)
T ss_pred             HHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc----------CcHHHHHHH
Confidence            334445554332   3334456788899999999999999998887666555554444433          234444444


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh-hcCCC--chhHHHHHHHHHHHHHHHH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG-RMSPS--LSFLVFGALSIFSGVLSLW  213 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~  213 (255)
                      .++.+++..+..+..+++.+|.+|++.|+++.|+.+....+|+.++|.+.+.. +....  ..++....+.+++.+..++
T Consensus       315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            45555555566788889999999999999999999999999999999999842 22222  2333344444444444444


Q ss_pred             h
Q 045196          214 L  214 (255)
Q Consensus       214 ~  214 (255)
                      +
T Consensus       395 ~  395 (406)
T PRK11551        395 L  395 (406)
T ss_pred             H
Confidence            4

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.55  E-value=5e-13  Score=109.67  Aligned_cols=149  Identities=14%  Similarity=0.007  Sum_probs=110.7

Q ss_pred             eecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           61 NVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        61 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      +.++++.+.....   ....++..++.++.|+++||+|||+++.++..+.+++.+.....          ++.+..++..
T Consensus        39 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~~  108 (406)
T PRK15402         39 VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA----------QSIEQFTLLR  108 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------ccHHHHHHHH
Confidence            3455666544433   33445777888999999999999999999988888887777665          4566666667


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HHh
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LWL  214 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~  214 (255)
                      ++.+.+.+...+..+..+.|.+|++.|.++.++......++..++|.+.+.  ...+++..+++.+++.+++.+.. +..
T Consensus       109 ~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~  188 (406)
T PRK15402        109 FLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAM  188 (406)
T ss_pred             HHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhC
Confidence            777766666667888899999999999999999888888888899988763  33467778887777776665544 345


Q ss_pred             ccCCC
Q 045196          215 PETKN  219 (255)
Q Consensus       215 ~e~~~  219 (255)
                      ||+++
T Consensus       189 ~~~~~  193 (406)
T PRK15402        189 PETAG  193 (406)
T ss_pred             CCCCc
Confidence            77643

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.55  E-value=4.5e-13  Score=112.62  Aligned_cols=156  Identities=14%  Similarity=0.040  Sum_probs=116.4

Q ss_pred             HHhhheeeeecccCchhHH---HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 045196           53 FVYYGIQLNVGNLNFNLYF---SVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGG  129 (255)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (255)
                      ......+.+..+++.+...   ......++...+.++.|+++||+|||++++++..+..+..+.....          ++
T Consensus        24 iv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a----------~~   93 (495)
T PRK14995         24 VLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS----------PT   93 (495)
T ss_pred             HHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc----------CC
Confidence            3444455556666665433   3333455667788999999999999999999999998888887776          57


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhcccc-chhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHH
Q 045196          130 SWPQLIIEGVGFMAASTAFDVMYIYCVELF-PTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIF  206 (255)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~  206 (255)
                      .+.+++..++.+++.+...+.....+.+.+ |+++|+++.|+......+|..++|.+.++  ...+|++.|++...++++
T Consensus        94 ~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~  173 (495)
T PRK14995         94 ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLV  173 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Confidence            777777888888777777777777776665 77899999999999999999999999884  345677888877766666


Q ss_pred             HHHHH-HHhccCC
Q 045196          207 SGVLS-LWLPETK  218 (255)
Q Consensus       207 ~~~~~-~~~~e~~  218 (255)
                      ..++. +++|+.+
T Consensus       174 ~~~l~~~~l~~~~  186 (495)
T PRK14995        174 VMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHhCCCCC
Confidence            55544 4556643

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.55  E-value=2.5e-13  Score=112.35  Aligned_cols=139  Identities=16%  Similarity=0.073  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 045196           78 LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVE  157 (255)
Q Consensus        78 ~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  157 (255)
                      ++..+|.+++|+++||+|||+.+.++.++.++..++..+.+.+..-  .......+++.+++.+++.++.++...+++.|
T Consensus        74 ~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  151 (432)
T PRK10406         74 LMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETI--GTWAPALLLLARLFQGLSVGGEYGTSATYMSE  151 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHH
Confidence            4555899999999999999999999999999888888776200000  00011246677888888888888999999999


Q ss_pred             ccchhcHHHHHHHHHHHHHHhhhhhhhHHHh----------hhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          158 LFPTNVRNIAVSFLRQALMLGASVSPLLVVV----------GRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       158 ~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      .+|+++|+...++.+.....|.++++.+...          ...+|+..|++.++..++..++...+||++
T Consensus       152 ~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~  222 (432)
T PRK10406        152 VAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETS  222 (432)
T ss_pred             hCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            9999999999988877666666666654321          145777888876666655543333456653

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.54  E-value=3.2e-13  Score=93.71  Aligned_cols=130  Identities=18%  Similarity=0.210  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhc
Q 045196           77 ALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCV  156 (255)
Q Consensus        77 ~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (255)
                      .++.+++.++.+++.||+|||+.+..+.....+..+.....          .+.+...+..++.+++.+...+....+..
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   77 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS----------SNITVLIIARFLQGFGAAFALVAGAALIA   77 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            45678889999999999999999998888877777666554          35566666667777777777788999999


Q ss_pred             cccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh--hcCCCchhHHHHHHHHHHHHHHHH-hcc
Q 045196          157 ELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG--RMSPSLSFLVFGALSIFSGVLSLW-LPE  216 (255)
Q Consensus       157 e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~e  216 (255)
                      |.+|++.|+++.++.+....++..++|.+.+..  ..++...+.+.+.+.+++.+..++ .||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999988742  234555667666666666555443 344

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.54  E-value=1.9e-13  Score=112.67  Aligned_cols=129  Identities=12%  Similarity=0.145  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY  154 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (255)
                      +..+...++.+++|+++||+|||+.+.++..+.++..++..+.          ++.+..+...++.+...+...+....+
T Consensus       270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~~~  339 (420)
T PRK09528        270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA----------TGPLEVSILKLLHAFEVPFLLVGVFKY  339 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677899999999999999999888888777766666554          355555555555555555555666788


Q ss_pred             hccccchhcHHHHHHH-HHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHH
Q 045196          155 CVELFPTNVRNIAVSF-LRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLW  213 (255)
Q Consensus       155 ~~e~~p~~~r~~~~~~-~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  213 (255)
                      ++|.+|++.|++..+. .++...+|.+++|.+.++  ...++...|...+++.++..++.++
T Consensus       340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            8999999999887766 466678999999998884  3446777788777777666555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.54  E-value=3.2e-13  Score=109.65  Aligned_cols=148  Identities=16%  Similarity=0.139  Sum_probs=112.7

Q ss_pred             eecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           61 NVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        61 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      +.++++.+.....   ....++..++.++.|+++||+|||+.+..+.++.++..+.+.+.          .+.+..++..
T Consensus        17 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~   86 (377)
T PRK11102         17 IAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----------QTIDQLIYMR   86 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH----------ccHHHHHHHH
Confidence            3445566544433   33445677889999999999999999999998888888877766          4566666777


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HHh
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LWL  214 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~  214 (255)
                      ++.+++.+...+...+++.|.+|++.|+++.++.+....+|..++|.+.+.  ...++...+++.++++++..++. +++
T Consensus        87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (377)
T PRK11102         87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI  166 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence            777777777778888999999999999999999999999999999998873  33456667777777666655444 456


Q ss_pred             ccCC
Q 045196          215 PETK  218 (255)
Q Consensus       215 ~e~~  218 (255)
                      ||+.
T Consensus       167 ~~~~  170 (377)
T PRK11102        167 PETL  170 (377)
T ss_pred             CccC
Confidence            7653

>PRK03699 putative transporter; Provisional

Probab=99.54  E-value=5.8e-13  Score=108.86  Aligned_cols=164  Identities=8%  Similarity=-0.040  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhe----eeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 045196           38 AKRLIMVMTAGFGVGFVYYGI----QLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSA  110 (255)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~  110 (255)
                      ++.++..++.++......+..    +.+.++++.+.....   ....++..++.++.|+++||+|||+.+..+.++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~   85 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            455555555555443333332    233445566544433   3344677889999999999999999999988888877


Q ss_pred             HHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--
Q 045196          111 SILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--  188 (255)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--  188 (255)
                      .++..+.          ++.+..++..++.+++.+...+....++.|.+|++.|+.+.++.+....+++.++|.+.+.  
T Consensus        86 ~~l~~~~----------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (394)
T PRK03699         86 VAGLMFS----------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL  155 (394)
T ss_pred             HHHHHHc----------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777665          4566666777777777777777888899999999999999999888888888888887763  


Q ss_pred             h-hcCCCchhHHHHHHHHHHHHHH
Q 045196          189 G-RMSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       189 ~-~~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      . ..+|+..|.+.+++.++..++.
T Consensus       156 ~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        156 ARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHH
Confidence            2 2467777777776665554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.54  E-value=2.6e-14  Score=115.79  Aligned_cols=149  Identities=13%  Similarity=0.110  Sum_probs=111.5

Q ss_pred             eeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHH
Q 045196           59 QLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLI  135 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
                      +.+.+.++.+.....   ....++..++.++.|+++||+|||+.+.++.++.+++.++..+.          .+.+..++
T Consensus        19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~   88 (379)
T TIGR00881        19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS----------TSLWVMAA   88 (379)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------hhHHHHHH
Confidence            344455566554433   33446777889999999999999999999999888888877776          46677777


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhh-HHHh--hhcCCCchhHHHHHHHHHHHHHH-
Q 045196          136 IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL-LVVV--GRMSPSLSFLVFGALSIFSGVLS-  211 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~-  211 (255)
                      ..++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|. +...  ...+++..+++.+++.++..++. 
T Consensus        89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881        89 LWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             HHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            7777787777778899999999999999999999999999999999984 4432  33456667777766665544443 


Q ss_pred             HHhccC
Q 045196          212 LWLPET  217 (255)
Q Consensus       212 ~~~~e~  217 (255)
                      ++.||+
T Consensus       169 ~~~~~~  174 (379)
T TIGR00881       169 LLLRDS  174 (379)
T ss_pred             eeeCCC
Confidence            344554

>PRK10504 putative transporter; Provisional

Probab=99.54  E-value=7.1e-13  Score=110.86  Aligned_cols=167  Identities=16%  Similarity=0.123  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHH----HhhheeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 045196           40 RLIMVMTAGFGVGF----VYYGIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASI  112 (255)
Q Consensus        40 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~  112 (255)
                      .++..+...+...+    .....+.+.+++|.+.....   ....++..++.++.|+++||+|||++++.+..+.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            34444444444332    23334455566777654432   333456677899999999999999999988877777666


Q ss_pred             HHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hh
Q 045196          113 LCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GR  190 (255)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~  190 (255)
                      ...+.          .+.+..++..++.+++.+...+...+++.|.+|++.|+++.++.+....+|..++|.+.+.  ..
T Consensus        91 ~~~~~----------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~  160 (471)
T PRK10504         91 FCALS----------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY  160 (471)
T ss_pred             HHHHh----------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            65544          4566667777788887777788899999999999999999999999999999999998874  33


Q ss_pred             cCCCchhHHHHHHHHHHHHHHH-Hhcc
Q 045196          191 MSPSLSFLVFGALSIFSGVLSL-WLPE  216 (255)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~-~~~e  216 (255)
                      .+|++.|.+...+..++.+... ..|+
T Consensus       161 ~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        161 ASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4566677776666655555443 3344

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.53  E-value=3.1e-13  Score=111.81  Aligned_cols=162  Identities=13%  Similarity=0.099  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHhhheee----ee-cccCchhHHHHHHH---HHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHH
Q 045196           40 RLIMVMTAGFGVGFVYYGIQL----NV-GNLNFNLYFSVALN---ALMEIPAVVIGTVLLSFT-NRRLLLSRSAYVAGSA  110 (255)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr~-grr~~l~~~~~~~~~~  110 (255)
                      .++..+...+...+.+|++..    ++ ..+|.+......+.   .+...++.+++|+++||+ |||+.++++.++.++.
T Consensus        10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg   89 (493)
T PRK15462         10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            344444454555555554432    22 23566554444333   345566889999999999 9999999999888887


Q ss_pred             HHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchh--cHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          111 SILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTN--VRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      .+++....         .......+...+...+.+...+...++++|.+|++  .|.+++++.+...++|++++|.+.++
T Consensus        90 ~lll~~~~---------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~  160 (493)
T PRK15462         90 HVVLGASE---------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY  160 (493)
T ss_pred             HHHHHHhh---------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence            76554321         11122222222333344445566778999999986  69999999999999999999999985


Q ss_pred             h--hcCCCchhHHHHHHHHHHHHH
Q 045196          189 G--RMSPSLSFLVFGALSIFSGVL  210 (255)
Q Consensus       189 ~--~~~~~~~~~~~~~~~~~~~~~  210 (255)
                      .  ..+++..|.+.++..+++.+.
T Consensus       161 L~~~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        161 AQEEYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHhhhChHHHHHHHHHHHHHHHHH
Confidence            3  456777787766554444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.53  E-value=1.7e-12  Score=107.56  Aligned_cols=153  Identities=8%  Similarity=0.024  Sum_probs=100.0

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCch--hHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFN--LYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      ..+++++++|.++......++.++.........+++.+. .+..  ......+..++.+++.++.++++||+|||+.+.+
T Consensus       213 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~  292 (437)
T TIGR00792       213 QIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG  292 (437)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            456778888876654444444433333222122222222 2211  1122233456778889999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccc-------hhcHHHHHHHHHHHH
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFP-------TNVRNIAVSFLRQAL  175 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~  175 (255)
                      +..+.++..+.+.+..         .+.+..++..++.+++.+...+..+++.+|..+       .+.+|+..|+.++..
T Consensus       293 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  363 (437)
T TIGR00792       293 GILLMVLGYLIFFFAG---------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVR  363 (437)
T ss_pred             HHHHHHHHHHHHHHcc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHH
Confidence            8877776665554431         233444555556666667777888999998865       456789999999999


Q ss_pred             HHhhhhhhhHHH
Q 045196          176 MLGASVSPLLVV  187 (255)
Q Consensus       176 ~~g~~~~p~~~~  187 (255)
                      .+|..+++.+.+
T Consensus       364 ~~g~~lg~~i~g  375 (437)
T TIGR00792       364 KLGQALAGFLVG  375 (437)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988877

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11043 putative transporter; Provisional

Probab=99.53  E-value=1.6e-12  Score=106.57  Aligned_cols=147  Identities=13%  Similarity=0.051  Sum_probs=107.3

Q ss_pred             eecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           61 NVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        61 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      +.++++.+......+   ..++..++.++.|+++||+|||+.+..+..+..+..++..+.          ++.+..++..
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~  101 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV----------ESAAQLLVLR  101 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh----------cCHHHHHHHH
Confidence            344556655544433   345677899999999999999999999888887777766665          4556666666


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhc
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLP  215 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
                      ++.+++.+...+....++.|.+|.+.++...+..+....++..++|.+.+.  ...+++..+++.+++.++..+..++++
T Consensus       102 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  181 (401)
T PRK11043        102 FVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLK  181 (401)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcC
Confidence            666665555556677888999999989888888888888888999988874  345666777777777666655555555


Q ss_pred             cC
Q 045196          216 ET  217 (255)
Q Consensus       216 e~  217 (255)
                      |.
T Consensus       182 ~~  183 (401)
T PRK11043        182 PS  183 (401)
T ss_pred             CC
Confidence            44

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.53  E-value=2.2e-12  Score=105.08  Aligned_cols=173  Identities=11%  Similarity=-0.035  Sum_probs=122.4

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      .++++++|+|+++...+..++.+......+...+.+.++.|.+......+   ..+..+++.++.+++.||+|+|+.+.+
T Consensus       196 ~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~  275 (382)
T TIGR00902       196 SAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLI  275 (382)
T ss_pred             hhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHH
Confidence            45778899988666555555444443322222334455677765444333   345677788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHH-HHHHhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQ-ALMLGASV  181 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~~g~~~  181 (255)
                      +.+.+.+...++.+.          ++.+..+...++.++..+...+....++.+. |++.|++++++.+. ...+|..+
T Consensus       276 ~~~~~~~~~~~~~~~----------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~  344 (382)
T TIGR00902       276 SAIACVGRWAIIGAI----------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAI  344 (382)
T ss_pred             HHHHHHHHHHHHHhH----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHH
Confidence            999888888777665          4667777777888888888888888899988 99999999999864 44688889


Q ss_pred             hhhHHHh--hhcCCCchhHHHHHHHHHHHHH
Q 045196          182 SPLLVVV--GRMSPSLSFLVFGALSIFSGVL  210 (255)
Q Consensus       182 ~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~  210 (255)
                      +|.+.|+  +..+ ...|++.+++.+++.++
T Consensus       345 g~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       345 FTAFAGFIYPTLG-AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHhcc-HHHHHHHHHHHHHHHHH
Confidence            9999984  2223 24466666666655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.52  E-value=1.8e-12  Score=105.95  Aligned_cols=150  Identities=13%  Similarity=0.044  Sum_probs=108.2

Q ss_pred             eeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+.++++.+......   ...++..++.++.|+++||+|||+.+.++.....+..+.....          ++.+..++.
T Consensus        33 ~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~  102 (394)
T PRK11652         33 DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA----------HSLTVLIAA  102 (394)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----------ccHHHHHHH
Confidence            344556666544433   3445777889999999999999999999888887777766655          456666666


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHH-HHH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVL-SLW  213 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~  213 (255)
                      .++.+++.+...+....+..|.++.+.|+.+.++.+....++..++|.+.+.  ...+++..+++.+++.++..++ .++
T Consensus       103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  182 (394)
T PRK11652        103 SAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARW  182 (394)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence            7777766666667777888999999999999999888888888899988874  2345666777766655544433 345


Q ss_pred             hccCCC
Q 045196          214 LPETKN  219 (255)
Q Consensus       214 ~~e~~~  219 (255)
                      .||+++
T Consensus       183 ~~~~~~  188 (394)
T PRK11652        183 MPETRP  188 (394)
T ss_pred             CCccCc
Confidence            677543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.52  E-value=4.1e-13  Score=112.04  Aligned_cols=141  Identities=10%  Similarity=-0.024  Sum_probs=103.6

Q ss_pred             cCchhHHHHHH---HHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           65 LNFNLYFSVAL---NALMEIPAVVIGTVLLSF-TNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        65 ~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      +|.+......+   ..++..++.+++|+++|| +|||+++.++.++.++..+++.+.          .+.+..++...+.
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~----------~~~~~~~~~~~l~  112 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS----------IYPDLIFYGLGTI  112 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc----------ccHhHHHHHHHHH
Confidence            56665444433   345677899999999999 899999999999888888777665          2344444455556


Q ss_pred             HHHHhhhhhhhhhhhccccchhc---HHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhc
Q 045196          141 FMAASTAFDVMYIYCVELFPTNV---RNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLP  215 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
                      +.+.+...+...++++|.+|++.   |+++.++.+...++|++++|.+.++  ...+++..|.+.++..+++.+..++.+
T Consensus       113 g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       113 AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence            66666677888899999998754   8889999999999999999999884  334677777776665555544443333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00897 2A0118 polyol permease family

Probab=99.52  E-value=1.4e-12  Score=106.83  Aligned_cols=181  Identities=15%  Similarity=0.060  Sum_probs=106.5

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHH-H
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLS-R  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~-~  102 (255)
                      .+++++++|+.+...+..++.........+..+.+.+..|.+.....   ....++.+++.++.|+++||+|||+.+. .
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~  293 (402)
T TIGR00897       214 AATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWF  293 (402)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence            45668888875544333332222222122223445556666554432   2344678889999999999999888764 3


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                      +.+.+++..+.+......     ...+.+..++..++.+++.+...+ ......|..| +.|+++.|+.+....+++.++
T Consensus       294 ~~l~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~g  366 (402)
T TIGR00897       294 GGVGCGIFTLALYYIPQH-----FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLA  366 (402)
T ss_pred             HHHHHHHHHHHHHHHHHc-----cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHH
Confidence            333333333333222100     012334444444445554444433 3455677655 579999999999999999999


Q ss_pred             hhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          183 PLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       183 p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      |.+.+.  ...++...+++.+++.+++.++..++
T Consensus       367 p~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       367 PAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            998883  33455566777777777766665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.52  E-value=8.9e-14  Score=108.09  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYI  153 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (255)
                      ...++..++.++.+|.++||+|||+++.++.+..+++..+.+..          .+...+++..++.+.+-+ ..++..+
T Consensus        75 SsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S----------~~F~afv~aR~l~Gi~kg-nl~v~rA  143 (451)
T KOG2615|consen   75 SSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS----------RNFAAFVLARFLGGIFKG-NLSVIRA  143 (451)
T ss_pred             hHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhhccC-chHHHHH
Confidence            44567889999999999999999999999999888876666655          355344444777776554 4488999


Q ss_pred             hhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          154 YCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       154 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      +++|+++++.|+.+++.......+|-++||.+.++
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgy  178 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY  178 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhH
Confidence            99999999999999999999999999999999984

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.52  E-value=3.2e-13  Score=113.37  Aligned_cols=131  Identities=17%  Similarity=0.115  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCch--------HHHHHHHHHHHHHhhhhh
Q 045196           78 LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSW--------PQLIIEGVGFMAASTAFD  149 (255)
Q Consensus        78 ~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  149 (255)
                      ++..+|.+++|+++||+|||+++.++.++.+++.+++.+.+          +++        .+++..++.+++.++.++
T Consensus        68 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~----------~~~~~g~~a~~~l~~~R~l~G~g~g~~~~  137 (490)
T PRK10642         68 LIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIP----------SYATIGIWAPILLLLCKMAQGFSVGGEYT  137 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcc----------cHHHHHHHHHHHHHHHHHHHHhHhHhhHH
Confidence            56778999999999999999999999999999998888873          332        367778888888888889


Q ss_pred             hhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh----------hhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          150 VMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV----------GRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       150 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      ....++.|.+|++.|+...++......+|..+++.+...          ...+|++.|++.+.+.+++.++...+||+.
T Consensus       138 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp  216 (490)
T PRK10642        138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETP  216 (490)
T ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            999999999999999999999887777777666644321          135677788776655554444434567763

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.51  E-value=1.6e-12  Score=108.64  Aligned_cols=142  Identities=13%  Similarity=0.059  Sum_probs=109.2

Q ss_pred             cCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHH
Q 045196           65 LNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGF  141 (255)
Q Consensus        65 ~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (255)
                      ++.+....+.   ...++..++.++.|+++||+|||+.+..+.++.++..++..+..        ..+.+..++..++.+
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~~~G  142 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA--------GGGIALVVFCRVIQG  142 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH--------HcCchHHHHHHHHHH
Confidence            4444444333   34457788999999999999999999998888777776654431        124556777788888


Q ss_pred             HHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hh-cCCCchhHHHHHHHHHHHHHHHHh
Q 045196          142 MAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GR-MSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       142 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      ++.+...+....+++|.+|+++|+++.++......+|.+++|.+.+.  .. .+|+..|++.+++.++..++.+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999999998873  33 378888888887776665555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.51  E-value=4.8e-13  Score=110.81  Aligned_cols=148  Identities=12%  Similarity=0.056  Sum_probs=104.2

Q ss_pred             ccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           64 NLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        64 ~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      +.+.+.....   ....++..++.++.|+++||+|||+.+.++.++.+++.++......      ...+.+...+..++.
T Consensus        55 ~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~l~  128 (438)
T TIGR00712        55 EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW------ATSSIAIMFVLLFLN  128 (438)
T ss_pred             HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHH
Confidence            3465544433   3344577788999999999999999999888887777666544310      012334444555666


Q ss_pred             HHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--h-hcCCCchhHHHHHHHHHHHHHH-HHhcc
Q 045196          141 FMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--G-RMSPSLSFLVFGALSIFSGVLS-LWLPE  216 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~-~~~~e  216 (255)
                      +++.+..++.....+.|.+|+++|+++.++.+....+++.++|.+.+.  . ..+|+..|++.++++++..+.. +++||
T Consensus       129 g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~  208 (438)
T TIGR00712       129 GWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRD  208 (438)
T ss_pred             HHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            666666667778888999999999999999999999999888876552  2 2467778888777777655443 45566


Q ss_pred             C
Q 045196          217 T  217 (255)
Q Consensus       217 ~  217 (255)
                      +
T Consensus       209 ~  209 (438)
T TIGR00712       209 T  209 (438)
T ss_pred             C
Confidence            4

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.50  E-value=1.2e-12  Score=105.79  Aligned_cols=149  Identities=14%  Similarity=0.017  Sum_probs=103.2

Q ss_pred             eeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+.++++.+......+   ..++..++.+..|+++||+|||+++........... ......         .+.+.+++.
T Consensus        16 ~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~~---------~~~~~l~~~   85 (368)
T TIGR00903        16 LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLDP---------FNYEWLLAC   85 (368)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHh---------ccHHHHHHH
Confidence            3344556555444333   345677889999999999999987665544333332 222221         356677777


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LW  213 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~  213 (255)
                      +++.+.+.+. ........+|.+|+++|++++++.+....+|..++|.+...  ...+|+..|++.+++.++..++. ++
T Consensus        86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903        86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777664 45566667899999999999999999999999999888774  34578888888777776655544 56


Q ss_pred             hccCCC
Q 045196          214 LPETKN  219 (255)
Q Consensus       214 ~~e~~~  219 (255)
                      +||+.+
T Consensus       165 lp~~p~  170 (368)
T TIGR00903       165 LPALPF  170 (368)
T ss_pred             cCCCCC
Confidence            787643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.50  E-value=3.1e-12  Score=104.50  Aligned_cols=149  Identities=11%  Similarity=0.049  Sum_probs=97.0

Q ss_pred             ecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH
Q 045196           62 VGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG  138 (255)
Q Consensus        62 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (255)
                      +.+.+.+....   ..+.+++.+++.++.+++.||+|||+.+.++..+..+..+++....         .+....  ..+
T Consensus       232 l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~--~~~  300 (393)
T PRK09705        232 YIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP---------LQLPVL--WAM  300 (393)
T ss_pred             HHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc---------chHHHH--HHH
Confidence            34456554433   3445678889999999999999999988888776666655444331         111111  122


Q ss_pred             HHHHHHhhhhhhhhhhhcccc-chhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcC-CCchhHHHHHHHHHHHHHH-HH
Q 045196          139 VGFMAASTAFDVMYIYCVELF-PTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMS-PSLSFLVFGALSIFSGVLS-LW  213 (255)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~  213 (255)
                      +.+++.+...+.......+.+ |++.|++..++.+..+.+++.++|.+.++  ...+ +...+.+.+.++++..++. .+
T Consensus       301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            334444555566666666766 46789999999999999999999999984  2222 4445555555555554443 45


Q ss_pred             hccCCCCC
Q 045196          214 LPETKNAP  221 (255)
Q Consensus       214 ~~e~~~~~  221 (255)
                      .||++++.
T Consensus       381 ~~~~~~~~  388 (393)
T PRK09705        381 APARFPQL  388 (393)
T ss_pred             ccccccch
Confidence            58877654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.50  E-value=1.2e-12  Score=106.55  Aligned_cols=180  Identities=15%  Similarity=0.185  Sum_probs=103.5

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeee-cccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhH--
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNV-GNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRL--   98 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~--   98 (255)
                      ..+.++++++++.+...+..+.............+.+. +..+.+....   .....++.+++.++.++++||+|||+  
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  284 (399)
T TIGR00893       205 KYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS  284 (399)
T ss_pred             ccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            34567788887755444443333333332222223333 3345543332   33445677889999999999999986  


Q ss_pred             HHHHHHHH--HHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH
Q 045196           99 LLSRSAYV--AGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM  176 (255)
Q Consensus        99 ~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  176 (255)
                      ........  ..+..........      .....+..+....+..++. +..+..+.+.+|.+|++.|+++.|+.+....
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  357 (399)
T TIGR00893       285 LVFARKTAIIAGLVLSLLMFATN------YVNIPYAALALVALGFFGL-GAGAIGWALISDNAPGNIAGLTGGLINSLGN  357 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHhch-hhhhHHHHHHHhhcChhHHHHHHHHHHHHHH
Confidence            21111111  1111111111110      0012233333333333333 3678899999999999999999999999999


Q ss_pred             HhhhhhhhHHHhh--hcC-CCchhHHHHHHHHHHHHHH
Q 045196          177 LGASVSPLLVVVG--RMS-PSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       177 ~g~~~~p~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~  211 (255)
                      +|+.++|.+.+..  ..+ +...+.+.+++.+++.+..
T Consensus       358 ~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       358 LGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999998842  233 4556666666666655544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.50  E-value=8.4e-13  Score=107.99  Aligned_cols=138  Identities=16%  Similarity=0.105  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q 045196           76 NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYC  155 (255)
Q Consensus        76 ~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (255)
                      ..++.++|+++.++++||+|||..+.++.++..++.+++.+..       .......+++..++.+...+........++
T Consensus        69 f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~-------~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   69 FFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSK-------SAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4468899999999999999999999988888777777666542       124666888889999988888889999999


Q ss_pred             ccccchhcHHHHHHHHHHHHHHhhhhhhhHHH---hhh-cCCCchhHHHHHHHHHHHHHHHHhccCCCC
Q 045196          156 VELFPTNVRNIAVSFLRQALMLGASVSPLLVV---VGR-MSPSLSFLVFGALSIFSGVLSLWLPETKNA  220 (255)
Q Consensus       156 ~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (255)
                      .|+.|++.||....+......+|..++..+..   +.. ..|.+.+....+..++..+...++||+.+.
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~  210 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKY  210 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence            99999999999888888888888877755543   111 224444455556666666667788998654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.50  E-value=4.7e-12  Score=106.22  Aligned_cols=157  Identities=15%  Similarity=0.025  Sum_probs=111.1

Q ss_pred             hhheeeeecccCchhHHHHHHHHHHH-HHHHHHHHHHHhhc-----chhHH-HHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 045196           55 YYGIQLNVGNLNFNLYFSVALNALME-IPAVVIGTVLLSFT-----NRRLL-LSRSAYVAGSASILCTLFSNNNNNKGKG  127 (255)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~l~dr~-----grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (255)
                      ....+.|....|.+......+..++. .++.++++.++||+     |||+. +..+.+..+++...+.+..       +.
T Consensus        32 ~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~-------~~  104 (491)
T PRK11010         32 SGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE-------PG  104 (491)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC-------Cc
Confidence            33445666666777655555433322 26889999999999     99885 5566666666666665542       22


Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hh--cCCCchhHHHHHHH
Q 045196          128 GGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GR--MSPSLSFLVFGALS  204 (255)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~--~~~~~~~~~~~~~~  204 (255)
                      .+.+...+..++.+++.+...+...++..|.+|+++|+++.++......+|.++++.+... ..  .+|+..|++.+++.
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~  184 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALL  184 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            3455555556666666667778889999999999999999999999999999988877763 22  36778888888777


Q ss_pred             HHHHHHHHHhccCC
Q 045196          205 IFSGVLSLWLPETK  218 (255)
Q Consensus       205 ~~~~~~~~~~~e~~  218 (255)
                      ++..+..++.||+.
T Consensus       185 ll~~l~~~~~~e~~  198 (491)
T PRK11010        185 IPCIIATLLAPEPT  198 (491)
T ss_pred             HHHHHHHHhcCCCc
Confidence            77665555677754

>PRK09952 shikimate transporter; Provisional

Probab=99.49  E-value=1.8e-12  Score=107.40  Aligned_cols=131  Identities=17%  Similarity=0.100  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCch--------HHHHHHHHHHHHHhhhhh
Q 045196           78 LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSW--------PQLIIEGVGFMAASTAFD  149 (255)
Q Consensus        78 ~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  149 (255)
                      ++..+|.++.|+++||+|||+.+.++..+.+++.++..+.+          +..        .+++.+++.+++.++.++
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~R~l~G~~~g~~~~  144 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLP----------SFSTIGWWAPVLLVTLRAIQGFAVGGEWG  144 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHHHHHHHHHHhhhcccHH
Confidence            34567889999999999999999999999999888888763          332        466678888888888888


Q ss_pred             hhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh----------hhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          150 VMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV----------GRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       150 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      ....++.|.+|++.|+...+.......+|..+++.+...          ...+|+.+|++.++..++...+....||++
T Consensus       145 ~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~  223 (438)
T PRK09952        145 GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESA  223 (438)
T ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            889999999999999999888888777887776654431          134677778776665544332223446653

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.48  E-value=3.6e-14  Score=112.97  Aligned_cols=139  Identities=14%  Similarity=0.158  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhh
Q 045196           71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDV  150 (255)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (255)
                      ..+....++..+.++++|++.||++||+++.++..+..++.++..+.          ..+|.+++++.+.+.+-+...++
T Consensus        72 ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----------~~Fwq~~l~R~~vGiGeAs~~~i  141 (493)
T KOG1330|consen   72 LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----------NHFWQVLLCRGFVGIGEASYSPI  141 (493)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhccchhhhccc
Confidence            34445567788899999999999999999999999999999988887          57889999999999999999999


Q ss_pred             hhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh---hhcCCCchhHHHHHHHHHHHHHHH-HhccCCC
Q 045196          151 MYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV---GRMSPSLSFLVFGALSIFSGVLSL-WLPETKN  219 (255)
Q Consensus       151 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  219 (255)
                      ...+++|.||...|++++++.++...+|+.+|-.....   ...+|++.|.+.+++.+++.++.+ +.+|.++
T Consensus       142 a~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  142 APSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             chhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            99999999999999999999999998888776544432   223488899999999988877765 4455443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.48  E-value=5.6e-12  Score=104.36  Aligned_cols=142  Identities=13%  Similarity=-0.105  Sum_probs=84.1

Q ss_pred             cccCchhHHHH---HHHHHHHHHHHHHHHHHHhhc--ch-hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           63 GNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFT--NR-RLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        63 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~--gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      ...|.+.....   .+..++.+++.++.|+++||+  ++ |...........+....+....        ..+.......
T Consensus       272 ~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  343 (434)
T PRK11663        272 ETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP--------FASYVMQAAC  343 (434)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc--------cccHHHHHHH
Confidence            44566544333   344567888999999999998  33 3332222222222222222221        1122222222


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  212 (255)
                      .+..+++..+..........|.+|++.|+++.|+.++.+.+|++++|.+.+.  ...++...|.+.+++.+++.+..+
T Consensus       344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            2222322222223445677899999999999999999999999999998884  344566677777777766655443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.48  E-value=4.7e-12  Score=103.49  Aligned_cols=143  Identities=13%  Similarity=0.089  Sum_probs=94.2

Q ss_pred             cccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHH
Q 045196           63 GNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGV  139 (255)
Q Consensus        63 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (255)
                      +.++.+......+   ..++.+++.++.|+++||+|||+.+..+.....+....+...          ++.+..++..++
T Consensus       245 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~l  314 (393)
T PRK15011        245 NELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA----------HSPAILLGLQLL  314 (393)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHH
Confidence            3455554433322   234556788999999999999998777665554443333222          234444444444


Q ss_pred             HHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhcc
Q 045196          140 GFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLPE  216 (255)
Q Consensus       140 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e  216 (255)
                      .+++.+...+....+..|.+|++ |+++.++.+...++|..++|.+.+.  ...++...+.+.+++.+++.+..+++||
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            44444444456667788999864 8999999988889999999999884  3345666677667777776666666665

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.48  E-value=4.2e-12  Score=104.21  Aligned_cols=132  Identities=18%  Similarity=0.178  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY  154 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (255)
                      +..+...++.++.|+++||+|||+.+..+....++..+++...          ++.+..++..++.+++. +..+....+
T Consensus        62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~-~~~~~~~~~  130 (408)
T PRK09874         62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA----------QNIWQFLILRALLGLLG-GFVPNANAL  130 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHhh-hhHHhHHHH
Confidence            3445677888999999999999999999888877777666554          35565555666665543 345667778


Q ss_pred             hccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HHhccC
Q 045196          155 CVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LWLPET  217 (255)
Q Consensus       155 ~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~  217 (255)
                      +.|.+|+++|+++.++.+....+|.+++|.+.+.  ...+++..+++.+++.+++.+.. +++||.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        131 IATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            8899999999999999999989999999998874  33466667777777666665544 345554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.47  E-value=4.1e-12  Score=104.22  Aligned_cols=186  Identities=11%  Similarity=-0.012  Sum_probs=115.0

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCc-hhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNF-NLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      ..+..+.+|+|+.|...++.++.+.......+.++++.. .+.. +......+..+...++.+++|+++||+|+|+++.+
T Consensus       242 ~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~  321 (462)
T PRK15034        242 IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI  321 (462)
T ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence            345677889988665544444433322212222222222 2211 11222333445677788999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccch---------------------
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPT---------------------  161 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------  161 (255)
                      +...+.++...........    ...+.+...+..+...++.+......+.+++.++|+                     
T Consensus       322 ~~i~~~i~~~~~~l~lp~~----~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~  397 (462)
T PRK15034        322 NFIFMAIFSALLFLTLPGT----GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAV  397 (462)
T ss_pred             HHHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHH
Confidence            8887777665443332100    012233444444444455666777888899999985                     


Q ss_pred             hcHHHHHHHHHHHHHHhhhhhhhHHHhh--h-cCCCchhHHHHHHHHHHHHHHHHh
Q 045196          162 NVRNIAVSFLRQALMLGASVSPLLVVVG--R-MSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       162 ~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      ++-|.+.|+....+.+|+++.|.+.+..  . .++...++.+.+..++|.++.++.
T Consensus       398 ~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        398 TETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            1467888999999999999999887732  2 334456777888888887776554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.47  E-value=3.3e-12  Score=105.82  Aligned_cols=153  Identities=11%  Similarity=0.019  Sum_probs=113.3

Q ss_pred             ccCchh---HHHHHHHHHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHH--hcccCCCCCCCCCchHHHHH
Q 045196           64 NLNFNL---YFSVALNALMEIPAVVIGTVLLSFTNRR--LLLSRSAYVAGSASILCTL--FSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        64 ~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .++.+.   ....++..+.+++|++++|++.||+|.|  ++++++.....+..+...+  ...    .....+.+.+.++
T Consensus       311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~----~~g~~~~~~f~~~  386 (477)
T PF11700_consen  311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS----FFGLKSPWEFWVL  386 (477)
T ss_pred             hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc----ccCcccHHHHHHH
Confidence            455543   3344556678899999999999999988  7777776665444333322  110    0012456677777


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh---hhcCCCchhHHHHHHHHHHHHHHHH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV---GRMSPSLSFLVFGALSIFSGVLSLW  213 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  213 (255)
                      .++.+.+.++.++..-++.+|+.|+++.+..+|+....+...++++|++.+.   ...+.+..++...++.++++++.++
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            8888888999999999999999999999999999999999999999999984   2234566777777777777777777


Q ss_pred             hccCCCC
Q 045196          214 LPETKNA  220 (255)
Q Consensus       214 ~~e~~~~  220 (255)
                      ++..+++
T Consensus       467 v~~~~g~  473 (477)
T PF11700_consen  467 VDVEKGR  473 (477)
T ss_pred             ccchhhh
Confidence            7765544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.47  E-value=1.8e-12  Score=108.42  Aligned_cols=161  Identities=16%  Similarity=0.112  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHHHhhheeee-----ecccCchhHHHHHHHH---HHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Q 045196           39 KRLIMVMTAGFGVGFVYYGIQLN-----VGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSF-TNRRLLLSRSAYVAGS  109 (255)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~grr~~l~~~~~~~~~  109 (255)
                      +.++..+...+...+.+|++..+     .+.+|.+......+.+   ....+..+++|+++|| +|||++++++.++.++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            34555555556566666655422     2345655444333322   2344456789999999 9999999999999999


Q ss_pred             HHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhc--HHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          110 ASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNV--RNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ..+++.+..         ......++...+.+.+.+...+...+++.|.+|++.  |+.++++.+...++|.+++|.+.+
T Consensus        94 g~~~~~~~~---------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g  164 (489)
T PRK10207         94 GYFMTGMSL---------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP  164 (489)
T ss_pred             HHHHHHHhc---------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            888877652         222233345556666677777888999999998874  577899999999999999998888


Q ss_pred             h--hhcCCCchhHHHHHHHHHHH
Q 045196          188 V--GRMSPSLSFLVFGALSIFSG  208 (255)
Q Consensus       188 ~--~~~~~~~~~~~~~~~~~~~~  208 (255)
                      +  ...+|++.|++.++..+++.
T Consensus       165 ~l~~~~gw~~~F~i~~i~~~~~~  187 (489)
T PRK10207        165 VIADKFGYSVTYNLCGAGLIIAL  187 (489)
T ss_pred             HHHHhhChHHHHHHHHHHHHHHH
Confidence            4  34467777777544333333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.47  E-value=1.5e-11  Score=100.21  Aligned_cols=173  Identities=16%  Similarity=0.035  Sum_probs=105.3

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRS  103 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~  103 (255)
                      ++++.++++..+......+...+.....+...+.+.++.+.+.....   .+..++.+++.+..|++.||+|||+.+..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~  271 (381)
T PRK03633        192 SIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQ  271 (381)
T ss_pred             CHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHH
Confidence            45677777764432222222222222222233445555566544332   234457778999999999999999988877


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhh
Q 045196          104 AYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSP  183 (255)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p  183 (255)
                      ..+..+..+... .           ... .....++.+.+.....+...+++.|..|++.++...+..+....+|++++|
T Consensus       272 ~~~~~~~~~~~~-~-----------~~~-~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp  338 (381)
T PRK03633        272 VFVVILGSIAML-S-----------QAA-MAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGP  338 (381)
T ss_pred             HHHHHHHHHHHh-h-----------hHH-HHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776665544332 1           111 112222333333445678888888999988888778888888889999999


Q ss_pred             hHHHh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196          184 LLVVV--GRMSPSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       184 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  212 (255)
                      .+.++  +..++...|.+.+++.++..+..+
T Consensus       339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        339 SFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            99984  344566666666666655543333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.47  E-value=2e-12  Score=105.81  Aligned_cols=152  Identities=10%  Similarity=-0.090  Sum_probs=99.6

Q ss_pred             HHHHHhhheeee-ecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 045196           50 GVGFVYYGIQLN-VGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKG  125 (255)
Q Consensus        50 ~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  125 (255)
                      ...+....++.+ .+.++.+......+   ..++..++.++.|+++||+|||+++..+.++.++..+.+.......  +.
T Consensus        30 ~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~  107 (399)
T PRK05122         30 TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLA--AW  107 (399)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhh--cc
Confidence            333433344443 34567665554444   3456778889999999999999999999887776655443321000  00


Q ss_pred             CCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHH
Q 045196          126 KGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGAL  203 (255)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~  203 (255)
                      ...+.+.+++..++.+.+.+...+....+..|.+|.++|+++.++......+|..++|.+.+.  ...++...+++.+++
T Consensus       108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~  187 (399)
T PRK05122        108 PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLL  187 (399)
T ss_pred             chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            001233456666777777777777888888999999999999999888888888888888773  333444444444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.47  E-value=1.7e-12  Score=104.01  Aligned_cols=142  Identities=18%  Similarity=0.195  Sum_probs=108.4

Q ss_pred             eeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+..+.+.+.....   ....++..++.++.|+++||+|||+.+.++..+..+..+.....          ++.+..++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~   93 (352)
T cd06174          24 LLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA----------SSLWLLLVG   93 (352)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh----------ccHHHHHHH
Confidence            34444555544333   33446778899999999999999999999999888888877665          466677777


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      .++.+++.+...+...++..|.+|+++|+++.++.+....+|..++|.+.+.  ...+++..+.+.+++.+++.+..
T Consensus        94 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174          94 RFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             HHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            7777877777888999999999999999999999999999999999998873  33345666666665555544433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.46  E-value=6.9e-13  Score=110.77  Aligned_cols=148  Identities=9%  Similarity=-0.048  Sum_probs=104.9

Q ss_pred             eeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      .+.++++.+....+.+   ..++..++.++.|+++||+|||+++.++.++.++..+++......     ...+.+.+++.
T Consensus        54 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~  128 (467)
T PRK09556         54 DMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS-----GSVSLGLMIAL  128 (467)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHH
Confidence            3445666665444433   345667889999999999999999988888777776665543100     01356677777


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hh---cCCCchhHHHHHHHHHHHHHH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GR---MSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      .++.+++.+...+....+++|.+|+++|+++.|+......+|.++++.+..+  ..   .++...|.+.+++.++..++.
T Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~  208 (467)
T PRK09556        129 WALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIG  208 (467)
T ss_pred             HHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHH
Confidence            7888887777788888999999999999999999998888888888776642  11   134555666666655544443


Q ss_pred             H
Q 045196          212 L  212 (255)
Q Consensus       212 ~  212 (255)
                      +
T Consensus       209 ~  209 (467)
T PRK09556        209 L  209 (467)
T ss_pred             H
Confidence            3

>PRK03545 putative arabinose transporter; Provisional

Probab=99.46  E-value=8.5e-12  Score=101.87  Aligned_cols=178  Identities=14%  Similarity=0.036  Sum_probs=106.9

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHH-HHhhheeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVG-FVYYGIQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      .+.++++|++.++......++...... ...+..++.....+.+....   ....+++.+++.++.++++||+|||....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~  275 (390)
T PRK03545        196 KSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI  275 (390)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence            346678888875544433333222222 11222222333345443332   33455678889999999999999887543


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                       +..+..+.........         .+.+..++..++.+++.....+.....+.+..| +.|+++.|+.+....+|..+
T Consensus       276 -~~~~~~~~~~~l~~~~---------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~  344 (390)
T PRK03545        276 -AIALLLVCLLLLLPAA---------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA  344 (390)
T ss_pred             -HHHHHHHHHHHHHHHh---------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH
Confidence             4333333333332221         334444445555555555445556677778777 57899999999999999999


Q ss_pred             hhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          182 SPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       182 ~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      +|.+.+.  ...+....+...+++.+++.++....
T Consensus       345 G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        345 GALLGNQVSLHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999884  44556666777777776666554433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.46  E-value=7.5e-12  Score=104.84  Aligned_cols=180  Identities=13%  Similarity=0.066  Sum_probs=127.4

Q ss_pred             HhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 045196           30 SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYV  106 (255)
Q Consensus        30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~  106 (255)
                      ..+|+|.+++......+..++..+...+...++.+...++....++   ..+-.++.++++|.++||++||++++.+-++
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~   84 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLL   84 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence            4578888777666666666666555555555555555555444333   3445567889999999999999999998887


Q ss_pred             HHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHH
Q 045196          107 AGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLV  186 (255)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~  186 (255)
                      .++..+.+.+....     ...+.|.++++.++.+.+.....|...++++|+.|.+....+.++.....++..++||.+.
T Consensus        85 ~~~~~~~L~~l~~~-----~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalg  159 (524)
T PF05977_consen   85 RALVALLLAVLAFF-----GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALG  159 (524)
T ss_pred             HHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHH
Confidence            76655544433211     1245677777778888888888899999999999999999999999999999999999998


Q ss_pred             Hh--hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          187 VV--GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       187 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      |.  ...+....|.+-++..++..+.+...
T Consensus       160 G~Lva~~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  160 GILVAFFGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            83  33455566666665555544444444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.46  E-value=8.9e-13  Score=106.72  Aligned_cols=144  Identities=14%  Similarity=0.152  Sum_probs=102.8

Q ss_pred             ecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH
Q 045196           62 VGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG  138 (255)
Q Consensus        62 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (255)
                      .++++.+.....   ....++..++.++.|+++||+|||+++.++.++.++..+...+.          ++.+..++..+
T Consensus        30 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~   99 (377)
T TIGR00890        30 GRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA----------DSLAALYLTYG   99 (377)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence            344565544433   34456778899999999999999999999998888888777776          45666666666


Q ss_pred             HHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH-h-hhcCCCchhHHHHHHHHHHHHHHH-Hhc
Q 045196          139 VGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV-V-GRMSPSLSFLVFGALSIFSGVLSL-WLP  215 (255)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~  215 (255)
                      +.+++.+..++.......|.+| ++|+++.++......+|..+++.+.+ . ...+++..|++.+++.++..+..+ +++
T Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  178 (377)
T TIGR00890       100 LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG  178 (377)
T ss_pred             HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence            7777666666667777888887 56999999999888888776544443 2 334566777777777766655443 444


Q ss_pred             c
Q 045196          216 E  216 (255)
Q Consensus       216 e  216 (255)
                      +
T Consensus       179 ~  179 (377)
T TIGR00890       179 Y  179 (377)
T ss_pred             c
Confidence            3

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.46  E-value=8.7e-12  Score=101.52  Aligned_cols=127  Identities=10%  Similarity=0.023  Sum_probs=99.4

Q ss_pred             HHHhhheeeeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 045196           52 GFVYYGIQLNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGG  128 (255)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (255)
                      .......+.+..+++.+....+.+   ..++..++.++.|+++||+|||+.+..+.++.++..+...+.          +
T Consensus        23 ~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~----------~   92 (381)
T PRK03633         23 AVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM----------V   92 (381)
T ss_pred             hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------c
Confidence            344444556666777765554444   345778899999999999999999999998888887777665          4


Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          129 GSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      +.+..++..++.+++.+...+.......+..|++.|++++++......+|..++|.+.+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            667777777777777777667777777788888999999999999999999999998874

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.45  E-value=8e-12  Score=101.02  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=86.6

Q ss_pred             eecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-CchHHHHH
Q 045196           61 NVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGG-GSWPQLII  136 (255)
Q Consensus        61 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  136 (255)
                      ..+.++.+......+   ..++..++.++.|+++||+|||+.++++.++.++..+++.+.          . +.+..++.
T Consensus        28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~   97 (366)
T TIGR00886        28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA----------VQSYSVLLLL   97 (366)
T ss_pred             HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHH
Confidence            334567665544333   445778899999999999999999999999888888777766          3 56666666


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      .++.+++.+ ..+....++.|.+|+++|+++.++......+|..+++.+.+
T Consensus        98 ~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        98 RLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             HHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            666665533 44667788999999999999999988777777666655543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.45  E-value=2.2e-11  Score=101.85  Aligned_cols=157  Identities=8%  Similarity=0.023  Sum_probs=94.0

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHH---HHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYF---SVALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      ..++.+++||.++..+...++.+...........++......+...   ...+.+++.+++.++.++++||+|||+.+.+
T Consensus       222 ~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~  301 (473)
T PRK10429        222 DIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG  301 (473)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            3455666887755544444444443332222222333322222222   2223346778888999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccc-----hhc--HHHHHHHHHHHH
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFP-----TNV--RNIAVSFLRQAL  175 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~--r~~~~~~~~~~~  175 (255)
                      +..+..+..+........     ...+.+..++..++.+++.+...+..+++++|..+     +..  .|...|...+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~  376 (473)
T PRK10429        302 ASIFPVLSCGVLLLMGLA-----APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVV  376 (473)
T ss_pred             HHHHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHH
Confidence            877655554443322000     11334444555555666677777888999999955     333  345667778888


Q ss_pred             HHhhhhhhhHHH
Q 045196          176 MLGASVSPLLVV  187 (255)
Q Consensus       176 ~~g~~~~p~~~~  187 (255)
                      .++..+++.+.+
T Consensus       377 K~~~al~~~i~g  388 (473)
T PRK10429        377 KGGSAFAAFFIG  388 (473)
T ss_pred             HHHHHHHHHHHH
Confidence            888888888776

>PRK10504 putative transporter; Provisional

Probab=99.45  E-value=6.3e-12  Score=105.16  Aligned_cols=151  Identities=17%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             HhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 045196           30 SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAY  105 (255)
Q Consensus        30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~  105 (255)
                      +++|++.++..+...++..+......+..+++.+ ..|.+.......   ..++.+++.++.+++.||+|||+++..+..
T Consensus       256 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~  335 (471)
T PRK10504        256 KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTL  335 (471)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            4788887655544444444444443444444444 356554443322   334556667889999999999999988888


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhH
Q 045196          106 VAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLL  185 (255)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~  185 (255)
                      +.++..+++.+..       ...+.+......++.+++.+...+....+..+.+|++.|+.+.++.++...+|..++|.+
T Consensus       336 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i  408 (471)
T PRK10504        336 GLALVSLLFMLVA-------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTI  408 (471)
T ss_pred             HHHHHHHHHHhcc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHH
Confidence            7777766655442       112222223333444455555667778888899999999999999999999999988888


Q ss_pred             HH
Q 045196          186 VV  187 (255)
Q Consensus       186 ~~  187 (255)
                      .+
T Consensus       409 ~g  410 (471)
T PRK10504        409 AG  410 (471)
T ss_pred             HH
Confidence            76

>PRK12382 putative transporter; Provisional

Probab=99.45  E-value=5.9e-12  Score=102.87  Aligned_cols=125  Identities=10%  Similarity=-0.068  Sum_probs=88.4

Q ss_pred             ecccCchhHHHHHHHH---HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH
Q 045196           62 VGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG  138 (255)
Q Consensus        62 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (255)
                      .+++|.+......+.+   +...++.++.|+++||+|||++++++.+.+.++.+.........  .....+.+..++..+
T Consensus        43 ~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~  120 (392)
T PRK12382         43 HHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILP--VSAPFKFALLVVGRL  120 (392)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            3567777655554443   46677889999999999999999988877665544322211000  000123455666677


Q ss_pred             HHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          139 VGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      +.+.+.+...+...+++.|.+|+++|+++.++......++..++|.+.+.
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~  170 (392)
T PRK12382        121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLL  170 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            77776666667777888999999999999999988888888899988774

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.44  E-value=9.7e-12  Score=104.33  Aligned_cols=186  Identities=12%  Similarity=0.040  Sum_probs=112.2

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHh-hheeeeecccCchhHHHHHHH----HHHHHHHHHHHHHHHhhcchhHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVY-YGIQLNVGNLNFNLYFSVALN----ALMEIPAVVIGTVLLSFTNRRLLL  100 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~dr~grr~~l  100 (255)
                      .++++++++++.+......+.........+ +..+++....|.+......+.    .++.++|.+++|+++||+|||+.+
T Consensus       213 ~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l  292 (491)
T PRK11010        213 APLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL  292 (491)
T ss_pred             HHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            357778877664443333332222222222 222333345666654443332    346778999999999999998887


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhh
Q 045196          101 SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGAS  180 (255)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  180 (255)
                      .++.++.++..+.......      ...+.+......++..++.+...+..+++..++.|.+.+++..++.+....+|..
T Consensus       293 ~i~~~l~~l~~l~~~~l~~------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~  366 (491)
T PRK11010        293 MIFGILQGVSNAGYWLLSI------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV  366 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHh------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            7666554544433222110      0122333333333433334444466788888999999999999999999999988


Q ss_pred             hhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhccC
Q 045196          181 VSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLPET  217 (255)
Q Consensus       181 ~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  217 (255)
                      +++.+.+.  ...++...|.+.+++++++.+....++++
T Consensus       367 ~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        367 YVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77777763  33456666777777777776666666554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.44  E-value=3.6e-12  Score=102.77  Aligned_cols=154  Identities=9%  Similarity=-0.066  Sum_probs=106.7

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHh-hheeeeecc-cCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVY-YGIQLNVGN-LNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLL  100 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l  100 (255)
                      ..++.++++|..+......+...+...... ...+.+..+ ++.+....   ....+++.+++.++.+++.||+|||+.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  280 (365)
T TIGR00900       201 EGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM  280 (365)
T ss_pred             hHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence            345667788775554444443333332222 333444443 45443332   3344567788999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhh
Q 045196          101 SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGAS  180 (255)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  180 (255)
                      ..+..+.++..+.+.+..         .+.+...+..++.+++.+...+....+..|.+|++.|+++.|+.+....+++.
T Consensus       281 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (365)
T TIGR00900       281 TGAIFVIGLAILVVGLTP---------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP  351 (365)
T ss_pred             HHHHHHHHHHHHHHHhhc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            887777766666655541         12455555666667777777788899999999999999999999999999999


Q ss_pred             hhhhHHHh
Q 045196          181 VSPLLVVV  188 (255)
Q Consensus       181 ~~p~~~~~  188 (255)
                      ++|.+.+.
T Consensus       352 ~g~~~~g~  359 (365)
T TIGR00900       352 LGLILAGP  359 (365)
T ss_pred             HHHHHHHH
Confidence            99998874

>PRK09848 glucuronide transporter; Provisional

Probab=99.44  E-value=2.4e-11  Score=101.05  Aligned_cols=154  Identities=10%  Similarity=0.026  Sum_probs=102.1

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      ..++.++++|.++...+..++.+..........+++.+. ++.+.......   ..++.+++.++.+++.||+|+|+.+.
T Consensus       219 ~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~  298 (448)
T PRK09848        219 ISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFL  298 (448)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            457789999986665555554444433333333444433 34443332221   13456678899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchh-------cHHHHHHHHHHH
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTN-------VRNIAVSFLRQA  174 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~~~  174 (255)
                      ++..++++..+.+.+.        +..+.+...+..++.+++.+...+..+++.+|..|.+       .+|...|+.++.
T Consensus       299 ~g~~~~~i~~~~~~~~--------~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~  370 (448)
T PRK09848        299 IGALLGTCGYLLFFWV--------SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFT  370 (448)
T ss_pred             HHHHHHHHHHHHHHHc--------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHH
Confidence            9888777766665543        1234444444455566667777788889999988754       358888999988


Q ss_pred             HHHhhhhhhhHHH
Q 045196          175 LMLGASVSPLLVV  187 (255)
Q Consensus       175 ~~~g~~~~p~~~~  187 (255)
                      ..+|..+++.+.+
T Consensus       371 ~klg~aig~~i~g  383 (448)
T PRK09848        371 RKCGQAIGGSIPA  383 (448)
T ss_pred             HHHHHHHHHHHHH
Confidence            8899988888776

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2.8e-11  Score=98.32  Aligned_cols=153  Identities=11%  Similarity=0.078  Sum_probs=107.0

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHH----HHHhhheeeeecccCchhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGV----GFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      ++..+++|+.++...+..++.+...    +...|+..+.+..................+++.++...+++|+|+|+++.+
T Consensus       228 ~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~  307 (467)
T COG2211         228 SFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLI  307 (467)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHH
Confidence            3456889988666655444444333    233444444444433444444444555667778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccc-----hhcH--HHHHHHHHHHH
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFP-----TNVR--NIAVSFLRQAL  175 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~~~~  175 (255)
                      +.++.++..+.+.+..        .++.+..++..++.+++.+...++.|++++|...     +..|  |...+...++.
T Consensus       308 ~~~~~~i~~~~~~f~~--------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~  379 (467)
T COG2211         308 GLLLLAVGYLLLYFTP--------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFR  379 (467)
T ss_pred             HHHHHHHHHHHHHhhc--------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHH
Confidence            9999999888888873        3455666667778888888899999999999854     3334  45567777777


Q ss_pred             HHhhhhhhhHHH
Q 045196          176 MLGASVSPLLVV  187 (255)
Q Consensus       176 ~~g~~~~p~~~~  187 (255)
                      .+|.+++..+.+
T Consensus       380 K~g~ala~~~~g  391 (467)
T COG2211         380 KLGLALAGFIPG  391 (467)
T ss_pred             HHHHHHHHHHHH
Confidence            788877776665

>PRK12382 putative transporter; Provisional

Probab=99.43  E-value=1.6e-11  Score=100.31  Aligned_cols=128  Identities=15%  Similarity=0.036  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY  154 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (255)
                      ..+++.+++.++.|++.||+|||+.+..+..+.++..+++...          .+.+..++..++.+++.+...+.....
T Consensus       257 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~~~  326 (392)
T PRK12382        257 AFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA----------PTAWVALAGAALTGAGCSLIFPALGVE  326 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc----------ccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3455677889999999999999999888887777766655443          344444445555555555566777778


Q ss_pred             hccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196          155 CVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       155 ~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  212 (255)
                      ..|.+|++.|+++.|+.+....+|..++|.+.+.  ...++...+.+.+++.+++.++.+
T Consensus       327 ~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        327 VVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999998884  445677778877777776665544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.43  E-value=3.9e-12  Score=117.18  Aligned_cols=108  Identities=13%  Similarity=-0.011  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYI  153 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (255)
                      .+..++.+++.+++|+++||+|||++++++.++.++..++..+..       ...+.+.+++..++.+++.+...+...+
T Consensus        54 ~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         54 ALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAY-------YLGWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH-------HHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            344556778899999999999999999888766555554433321       0134667777777888888888889999


Q ss_pred             hhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          154 YCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       154 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      +++|++|.+.|+.++|+......+|.+++|.+.++
T Consensus       127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~  161 (1146)
T PRK08633        127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSF  161 (1146)
T ss_pred             hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998874

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.43  E-value=7e-12  Score=115.41  Aligned_cols=181  Identities=9%  Similarity=-0.009  Sum_probs=111.7

Q ss_pred             HHhhcChhHHHHHHHHHHHHHHHHHHhhhee-----eeecccCch----hHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 045196           29 ESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQ-----LNVGNLNFN----LYFSVALNALMEIPAVVIGTVLLSFTNRRLL   99 (255)
Q Consensus        29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~   99 (255)
                      .++++++.+++.++..++..+...+....+.     ......+.+    ..+...+..+..++..+++|+++||+|||++
T Consensus         5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~   84 (1140)
T PRK06814          5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL   84 (1140)
T ss_pred             hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence            3467777655554444444444333222211     111111111    1222333445667888999999999999997


Q ss_pred             HHHHHHHHHH--HHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHH
Q 045196          100 LSRSAYVAGS--ASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML  177 (255)
Q Consensus       100 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  177 (255)
                      +.....+..+  ...+..+..         .+.+.++++.++.+.+.+...+...+++.+++|.+.|+.++|+.++...+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~---------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~i  155 (1140)
T PRK06814         85 AKILKFAEIGIAALAIYGFHL---------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFI  155 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHH
Confidence            6432222111  111222221         46777888888888888888899999999999999999999999999999


Q ss_pred             hhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          178 GASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       178 g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      |.+++|.+.++  ...++...|...+++.+++.++.+++|+++
T Consensus       156 g~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        156 AILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            99999999984  333444444333333333444445566543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.42  E-value=2e-11  Score=100.16  Aligned_cols=122  Identities=4%  Similarity=-0.099  Sum_probs=95.1

Q ss_pred             eeeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHH
Q 045196           59 QLNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLI  135 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
                      +.+.+.++.+......+   ..++..++.+..|++.||+|||+.+.++..++++..++.....       ..++.+..++
T Consensus        27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-------~~~~~~~~l~   99 (410)
T TIGR00885        27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-------EIMNYTLFLV   99 (410)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-------hhccHHHHHH
Confidence            44455667665544433   4467788999999999999999999999998888876654331       1135666677


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          136 IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ..++.+.+.+...+....++.++.|++.|++..++.+....+|..++|.+..
T Consensus       100 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885       100 GLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             HHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888888888999999999999999999999999999988776

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.42  E-value=5.9e-12  Score=102.52  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-HHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASI-LCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      ....+..+++.++.++++||+|||+.+.....+..+..+ ......       ...+.+......++.+++.+...+...
T Consensus       262 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~  334 (394)
T TIGR00883       262 MLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL-------DSGSFTLFFFLVLGLALIGGMYTGPMG  334 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------cCCchHHHHHHHHHHHHHHHHHhhhHH
Confidence            334567788889999999999999987765554443332 222111       112444444455555666666778889


Q ss_pred             hhhccccchhcHHHHHHHHHHH-HHHhhhhhhhHHHh
Q 045196          153 IYCVELFPTNVRNIAVSFLRQA-LMLGASVSPLLVVV  188 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~-~~~g~~~~p~~~~~  188 (255)
                      ++++|.+|++.|+++.++.+.. ..+|+.++|.+.+.
T Consensus       335 ~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~  371 (394)
T TIGR00883       335 SFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA  371 (394)
T ss_pred             HHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence            9999999999999999986544 45788899998884

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.42  E-value=3.1e-12  Score=106.46  Aligned_cols=171  Identities=13%  Similarity=0.069  Sum_probs=102.7

Q ss_pred             HhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhc--chhHHHHHH-
Q 045196           30 SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFT--NRRLLLSRS-  103 (255)
Q Consensus        30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~--grr~~l~~~-  103 (255)
                      ++++++.++......++..+........++.+..+.+.+.....   .+.+++.+++.++.++++||.  ++|+...++ 
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  315 (455)
T TIGR00892       236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSF  315 (455)
T ss_pred             HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHH
Confidence            46677765433333332222222222222333344555543333   334556677888899999973  344333332 


Q ss_pred             -HHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          104 -AYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                       .+..++..++....          .+.+..++..++.+++.+...+..++++.|.+|++.++++.|+.+....+|++++
T Consensus       316 ~~~~~~l~~ll~~~~----------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig  385 (455)
T TIGR00892       316 ALLFNGLTHLLCALA----------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIG  385 (455)
T ss_pred             HHHHHHHHHHHHHHh----------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcc
Confidence             22222333333222          3455555556666666666778888999999999999999999999999999999


Q ss_pred             hhHHHh--hhc-CCCchhHHHHHHHHHHHHH
Q 045196          183 PLLVVV--GRM-SPSLSFLVFGALSIFSGVL  210 (255)
Q Consensus       183 p~~~~~--~~~-~~~~~~~~~~~~~~~~~~~  210 (255)
                      |.+.+.  ... ++...|.+.+++.+++.+.
T Consensus       386 p~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       386 PPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             ccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            999984  222 3556677766666655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.42  E-value=6.5e-12  Score=103.97  Aligned_cols=110  Identities=14%  Similarity=0.122  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCch--------HHHHHHHHHHHHHhhhhhhhh
Q 045196           81 IPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSW--------PQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        81 ~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      .++.++.|+++||+|||+.++.+..+..+..+++.+.          ++.+        .+++.+++.+++.+...+...
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~  139 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV----------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVS  139 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC----------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHH
Confidence            4678999999999999999999999888888887776          2332        345667777777777777788


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh----------hhcCCCchhHHH
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV----------GRMSPSLSFLVF  200 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~----------~~~~~~~~~~~~  200 (255)
                      .+++|.+|++.|+++.++.....++|..+++.+.+.          ...+|+.+|++.
T Consensus       140 ~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~  197 (434)
T PRK15075        140 VYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG  197 (434)
T ss_pred             HHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence            999999999999999999888877776666655442          234566666653

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.42  E-value=2.3e-11  Score=99.36  Aligned_cols=180  Identities=12%  Similarity=0.034  Sum_probs=107.2

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHHHHH----HHHHHHHHHHHHHHhhcchhHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNA----LMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      .++++++|+|..+......++........+-..+.+..+.|.+......+..    ...+++.++.|++.||+|+|+.+.
T Consensus       199 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~  278 (390)
T TIGR02718       199 ASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI  278 (390)
T ss_pred             HHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4577888888755444444433333322222233455567777665554433    244567889999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccch-hcHHHHHHHHHHHHHHhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPT-NVRNIAVSFLRQALMLGAS  180 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~  180 (255)
                      ++..+.++..+.........    .....+.......+..+..+...+.......+..++ +.+++.+++.+....+|..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~  354 (390)
T TIGR02718       279 LGVGLAGSLALLWFAQAAFW----LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL  354 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHcc----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH
Confidence            77665533322222111000    001222223333333444555556666666666665 8899999999999999999


Q ss_pred             hhhhHHHh--hhcCCCchhHHHHHHHHHHHH
Q 045196          181 VSPLLVVV--GRMSPSLSFLVFGALSIFSGV  209 (255)
Q Consensus       181 ~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~  209 (255)
                      ++|.+.+.  ...++...|...+++.+++.+
T Consensus       355 ~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       355 IASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999884  334555666666665555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.42  E-value=1.7e-11  Score=98.15  Aligned_cols=131  Identities=24%  Similarity=0.247  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhh
Q 045196           73 VALNALMEIPAVVIGTVLLSFTNRRL-LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVM  151 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (255)
                      .....++..++.++.+++.||+|||+ .+..+..+..++.+.....          .+.+...+..++.+++.+...+..
T Consensus       217 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~  286 (352)
T cd06174         217 LSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA----------PSLALLLVALLLLGFGLGFAFPAL  286 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHhccchhH
Confidence            34455678889999999999999999 8888888888887777665          345566666777777778888999


Q ss_pred             hhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHH
Q 045196          152 YIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLW  213 (255)
Q Consensus       152 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  213 (255)
                      ..+..|..|++.|++..++.+....++..++|.+.+.  ...++...+.+.+++.+++.+..++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            9999999999999999999999999999999999884  3456777788888887777665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.41  E-value=4.5e-11  Score=98.17  Aligned_cols=115  Identities=16%  Similarity=0.030  Sum_probs=84.2

Q ss_pred             ccCchhHHHHHHH---HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           64 NLNFNLYFSVALN---ALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        64 ~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      +++.+......+.   .+...++.+..|++.||+|.|+++.++.++.++..+...+....     ..++++.+++..++.
T Consensus        64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~-----~~~s~~~lli~r~l~  138 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN-----PNTPFGIFIVIALLC  138 (462)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc-----cCCCHHHHHHHHHHH
Confidence            4666655444333   34555677888999999999999999999888888777764100     113566777777777


Q ss_pred             HHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhh
Q 045196          141 FMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL  184 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~  184 (255)
                      +++ +..++.....+++.+|+++||++.|+....+++|..++++
T Consensus       139 Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~  181 (462)
T PRK15034        139 GFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL  181 (462)
T ss_pred             HHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence            775 5677889999999999999999999997666666654433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.41  E-value=3e-11  Score=99.07  Aligned_cols=161  Identities=12%  Similarity=0.105  Sum_probs=112.8

Q ss_pred             HHHhhheeeeecccCchhHHHHHHHHH-HHHHHHHHHHHHHhhc-----chhH-HHHHHHHHHHHHHHHHHHhcccCCCC
Q 045196           52 GFVYYGIQLNVGNLNFNLYFSVALNAL-MEIPAVVIGTVLLSFT-----NRRL-LLSRSAYVAGSASILCTLFSNNNNNK  124 (255)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~-----grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~  124 (255)
                      .+.....+.|+.+.|.+......+..+ .-.+..+++|+++||+     |||+ .+.++..+++++...+.+..      
T Consensus        16 ~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~------   89 (402)
T PRK11902         16 ALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP------   89 (402)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC------
Confidence            444455667888888887766555433 2256789999999999     7765 67777777777777666552      


Q ss_pred             CCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hh--cCCCchhHHHH
Q 045196          125 GKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GR--MSPSLSFLVFG  201 (255)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~--~~~~~~~~~~~  201 (255)
                       +..+.+...+..++.+++.....+...++++|.+|+++|+++.++......+|.++++.+... ..  .+|+..|++.+
T Consensus        90 -~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a  168 (402)
T PRK11902         90 -PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMA  168 (402)
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHH
Confidence             112344444444455555666778889999999999999999999998888888888776653 22  36777888877


Q ss_pred             HHHHHHHHHHHHhccCCC
Q 045196          202 ALSIFSGVLSLWLPETKN  219 (255)
Q Consensus       202 ~~~~~~~~~~~~~~e~~~  219 (255)
                      ++.+++.+..++.||++.
T Consensus       169 ~~~l~~~l~~~~~~e~~~  186 (402)
T PRK11902        169 GLMLAGALTTLWAPEPEV  186 (402)
T ss_pred             HHHHHHHHHHHhcCCCcc
Confidence            776666555556676543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.41  E-value=2.7e-11  Score=100.28  Aligned_cols=117  Identities=15%  Similarity=0.045  Sum_probs=74.0

Q ss_pred             cCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH-HHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           65 LNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASIL-CTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        65 ~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      .|.+....   ..+..++.+++.++.|+++||+|||+.++.+..+..+..+. .....       ...+........++.
T Consensus       269 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  341 (434)
T PRK15075        269 LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV-------AAPSFARMLAVELWL  341 (434)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-------cCCchHHHHHHHHHH
Confidence            45543332   33445677889999999999999999887765544332221 11111       012222222222333


Q ss_pred             HHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHH-hhhhhhhHHHh
Q 045196          141 FMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML-GASVSPLLVVV  188 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~p~~~~~  188 (255)
                      +++.+...+..+.+..|.+|++.|+++.++.+..+.. ++.++|.+.++
T Consensus       342 ~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~  390 (434)
T PRK15075        342 SFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW  390 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence            3444555566778899999999999999998766654 57788988874

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.40  E-value=1.5e-11  Score=100.57  Aligned_cols=137  Identities=12%  Similarity=0.049  Sum_probs=101.9

Q ss_pred             eeecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHH
Q 045196           60 LNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLII  136 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
                      ....+++.+......+   ..++..++.++.|+++||+|||+++..+..+.+++.+...+.          ++.+..++.
T Consensus        34 ~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----------~~~~~ll~~  103 (393)
T PRK09705         34 QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----------PQSALLLSS  103 (393)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC----------cchHHHHHH
Confidence            3444566665444433   335677889999999999999999999999999999988887          466777778


Q ss_pred             HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hh--cCCCchhHHHHHHHHHH
Q 045196          137 EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GR--MSPSLSFLVFGALSIFS  207 (255)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~--~~~~~~~~~~~~~~~~~  207 (255)
                      .++.+++.+...+....++.+.+| ++|+.++++......+|..+++.+.+. ..  .+|+..+..+++..++.
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            888888888877888888999997 679999999988877777777776663 21  13445555444444333

>TIGR00897 2A0118 polyol permease family

Probab=99.40  E-value=2.6e-11  Score=99.45  Aligned_cols=135  Identities=10%  Similarity=-0.002  Sum_probs=91.7

Q ss_pred             HHHHHHHhhheeeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 045196           48 GFGVGFVYYGIQLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNK  124 (255)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  124 (255)
                      .......+...+.+.++++.+......   ...++..++.++.|+++||+|||+++..+..+.+++.++......     
T Consensus        26 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~-----  100 (402)
T TIGR00897        26 MTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL-----  100 (402)
T ss_pred             HHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            333333333344455666766544433   445677889999999999999999999988888776654432100     


Q ss_pred             CCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhh-hhhhhHHHh
Q 045196          125 GKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGA-SVSPLLVVV  188 (255)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~-~~~p~~~~~  188 (255)
                       ...+.+..++..++.+++.+...+....++.+.+|+++|+++.|+.+....+|. .++|.+.++
T Consensus       101 -~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897       101 -GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             -cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             012445555556666655555555666778899999999999999999988886 578887663

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PTZ00207 hypothetical protein; Provisional

Probab=99.40  E-value=4e-11  Score=101.18  Aligned_cols=145  Identities=12%  Similarity=0.126  Sum_probs=99.2

Q ss_pred             ecccCchhHHHHHHHHHHHH--HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHH
Q 045196           62 VGNLNFNLYFSVALNALMEI--PAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGV  139 (255)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (255)
                      ...++.+......+.+++..  .+.+++|++.||+|||+++.++.++.++..++..+....    ....+.+.+.+..++
T Consensus        54 ~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~----~i~~s~~~l~l~r~l  129 (591)
T PTZ00207         54 QARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE----VIEGSVVRLSVYNGL  129 (591)
T ss_pred             HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc----cccCcHHHHHHHHHH
Confidence            44556665444444333222  345578999999999999999999999988887775200    001356666667777


Q ss_pred             HHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh-hhhHHHhhhcCCCchhHHHHHHHHHHHHHH
Q 045196          140 GFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV-SPLLVVVGRMSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       140 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      .+.+.+...+.....+.++|| +.||.+.|+......+|+++ +|+...+...++...+++.+++.++..++.
T Consensus       130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~  201 (591)
T PTZ00207        130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA  201 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            777776666777788889997 67999999999999999875 555554443445556666666666554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.40  E-value=2.5e-11  Score=98.45  Aligned_cols=147  Identities=18%  Similarity=0.143  Sum_probs=96.4

Q ss_pred             ecccCchhHHHHHHHH---HHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           62 VGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSFTNRRLLLSR-SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        62 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~grr~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      .++++.+......+.+   +...+..++.|+++||+|||+.++. +.....+..++..+.          ++.+..++..
T Consensus        25 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~   94 (375)
T TIGR00899        25 SEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN----------RNYFLLLVLG   94 (375)
T ss_pred             HcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc----------chHHHHHHHH
Confidence            3456776655544433   4566778899999999999887655 444444444454444          3555554444


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHH--HHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-H
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIA--VSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-L  212 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~  212 (255)
                      ++.+.+.+...+....+..|..|++.|+.+  .+.......+|..++|.+.+.  ...+++..|++.+.+.++..++. +
T Consensus        95 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899        95 VLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            444444455567777888888887777654  567777778888999988874  34567778888877766665554 4


Q ss_pred             HhccCC
Q 045196          213 WLPETK  218 (255)
Q Consensus       213 ~~~e~~  218 (255)
                      ++||.+
T Consensus       175 ~~~~~~  180 (375)
T TIGR00899       175 FLPSYP  180 (375)
T ss_pred             hCCCcc
Confidence            467644

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.39  E-value=7e-11  Score=96.24  Aligned_cols=172  Identities=11%  Similarity=-0.096  Sum_probs=107.6

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      ..++++++|+|.++......++........+...+.+..+.|.+......   +..++.++..++.+++.||+|+|+.+.
T Consensus       195 ~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~  274 (382)
T PRK11128        195 WPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLL  274 (382)
T ss_pred             cchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            35688999998866655544444443322222223333455655433332   334566777889999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHH-HHhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQAL-MLGAS  180 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~  180 (255)
                      ++....++..+.+...          ++.+..++..++.+++.+...+....+..+. +++.+++..++.+... .+|..
T Consensus       275 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~  343 (382)
T PRK11128        275 LSAICGVVRWGLMGST----------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIA  343 (382)
T ss_pred             HHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHH
Confidence            8888777766655544          4566666666666766666667777777776 4555788888876443 56668


Q ss_pred             hhhhHHHhhhcC-CCchhHHHHHHHHHH
Q 045196          181 VSPLLVVVGRMS-PSLSFLVFGALSIFS  207 (255)
Q Consensus       181 ~~p~~~~~~~~~-~~~~~~~~~~~~~~~  207 (255)
                      ++|.+.|..... ....++..+++.+++
T Consensus       344 ig~~i~G~l~~~~g~~~~~~~~~~~~~~  371 (382)
T PRK11128        344 IMTVLSGFLYQHLGAGVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            899988843221 123444445444444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.39  E-value=1.2e-11  Score=101.48  Aligned_cols=128  Identities=13%  Similarity=0.023  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q 045196           76 NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYC  155 (255)
Q Consensus        76 ~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (255)
                      .+++.+++.++.|+++||+|||+.+..+..+..+..+.....          .+.+...+..++.+++.+...+....+.
T Consensus       267 ~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~  336 (408)
T PRK09874        267 PGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV----------QTPLQLGILRFLLGAADGALLPAVQTLL  336 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence            345666788889999999999999888877666655554443          3445555555566666666677778888


Q ss_pred             ccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHH
Q 045196          156 VELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLW  213 (255)
Q Consensus       156 ~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  213 (255)
                      .+..|.+.|++..++.+....+|..++|.+.+.  ...++...|.+.+++.+++.++.++
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        337 VYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999884  3345667788777777776665543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.39  E-value=2.3e-11  Score=99.57  Aligned_cols=175  Identities=8%  Similarity=0.034  Sum_probs=107.3

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec----ccCchhHH---HHHHHHHHHHHHHHHHHHHHhhcchhH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG----NLNFNLYF---SVALNALMEIPAVVIGTVLLSFTNRRL   98 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~grr~   98 (255)
                      .+.++++|+|.++...+..+.............+.+.+    ..+.+...   ...+..+...++.+..+++.||+|||+
T Consensus       206 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~  285 (396)
T TIGR00882       206 KLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN  285 (396)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            45778888887554444333332222111111111211    11222222   223344566778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHH-HHHHHHH
Q 045196           99 LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSF-LRQALML  177 (255)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~  177 (255)
                      .+.++..+.++...+....          .+.+..+...++.+.+..........+..+..|++.++++.+. .+....+
T Consensus       286 ~l~~~~~l~~l~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~l  355 (396)
T TIGR00882       286 ALLIAGTIMSVRIIGSSFA----------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQL  355 (396)
T ss_pred             hHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHH
Confidence            9988887777765554443          3555555555555555444444556677888888888887766 5677789


Q ss_pred             hhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHH
Q 045196          178 GASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVL  210 (255)
Q Consensus       178 g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~  210 (255)
                      |++++|.+.++  ...++...|.+.+++.++..++
T Consensus       356 g~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       356 AMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            99999998884  3346667777777766665544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.39  E-value=3.8e-11  Score=100.94  Aligned_cols=167  Identities=13%  Similarity=0.039  Sum_probs=105.6

Q ss_pred             HhhcChhHHHHHHHHHHHHHHHHHHhhhee-----eeecccCchhHHHHHHHHH---HHHHHHHHHHHHHhh-cchhHHH
Q 045196           30 SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQ-----LNVGNLNFNLYFSVALNAL---MEIPAVVIGTVLLSF-TNRRLLL  100 (255)
Q Consensus        30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr-~grr~~l  100 (255)
                      +.+++|+   .++..+...++..+.+|.+.     +..+.+|.+......+.+.   ......+++|+++|| +|||+.+
T Consensus        15 ~~~~~p~---~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~   91 (500)
T PRK09584         15 NAFKQPK---AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI   91 (500)
T ss_pred             hhhcCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            3455553   23344444444444444433     2234566655443333222   223334689999999 5999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhc--HHHHHHHHHHHHHHh
Q 045196          101 SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNV--RNIAVSFLRQALMLG  178 (255)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g  178 (255)
                      +++.++.++..+++.+..         ...+...+...+.+++.+...+...+++.|.+|++.  |..+.++.+...++|
T Consensus        92 ~~g~~~~~ig~~l~~~~~---------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG  162 (500)
T PRK09584         92 MLGAIVLAIGYALVAWSG---------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIG  162 (500)
T ss_pred             HHHHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHH
Confidence            999988888776666541         223334444455566666666788889999998643  456788889999999


Q ss_pred             hhhhhhHHHh--hhcCCCchhHHHHHHHHHHH
Q 045196          179 ASVSPLLVVV--GRMSPSLSFLVFGALSIFSG  208 (255)
Q Consensus       179 ~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~  208 (255)
                      ++++|.+.++  ...+|+..|.+.++..+++.
T Consensus       163 ~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        163 SFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            9999999984  33567777877665444443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.39  E-value=1.9e-11  Score=102.63  Aligned_cols=139  Identities=14%  Similarity=0.112  Sum_probs=100.0

Q ss_pred             ecccCchh--HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHH
Q 045196           62 VGNLNFNL--YFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGV  139 (255)
Q Consensus        62 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (255)
                      ..++|.+.  .+......+...++.++.|.++|.+|||..++.+.++..+..+.....          ++...++....+
T Consensus        71 ~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA----------~~~~~~iag~~l  140 (599)
T PF06609_consen   71 NADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA----------QNMNTFIAGMVL  140 (599)
T ss_pred             HHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC----------CcHHHHHHHHHH
Confidence            34455433  233334456777788999999999999999999999998888887766          455566667777


Q ss_pred             HHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH
Q 045196          140 GFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       140 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      .+++.+.. .+....++|+.|.+.|..+.++.....-+....+|.+...  ...+|++.|++.++...++++..
T Consensus       141 ~GvgaG~~-~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  141 YGVGAGVQ-ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             HHHhhHHH-HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence            77664443 5566778999999999888877765554545566776652  34578999988888777766554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=5.8e-12  Score=98.71  Aligned_cols=131  Identities=17%  Similarity=0.161  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYI  153 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (255)
                      ..-++.+++.+++.|.+.||+|+|..++++..++..+.+++++.          ++++..++.+.+.+.+.+.......+
T Consensus       113 askA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg----------~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  113 ASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG----------NSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             HHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc----------chhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            33457888999999999999999999999999999999999887          67888899999999999999999999


Q ss_pred             hhccccchhc-HHHHHHHHHHHHHHhhhhhhhHHH--hhhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          154 YCVELFPTNV-RNIAVSFLRQALMLGASVSPLLVV--VGRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       154 ~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      ++++.||.+. |++++|+.-.+..+|-.++|.+.+  +...+...+|++.++++++...+.+++
T Consensus       183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            9999999866 799999999999999999999998  466788999999999999988776655

>PRK09669 putative symporter YagG; Provisional

Probab=99.39  E-value=9.8e-11  Score=97.28  Aligned_cols=155  Identities=10%  Similarity=-0.006  Sum_probs=94.7

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhH---HHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLY---FSVALNALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      ..++++++|++.++..+...++.............++......+..   .......+..+++.+++++++||+|||+.+.
T Consensus       219 ~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~  298 (444)
T PRK09669        219 WKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFK  298 (444)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            4567788999886655444333333332211111122221111111   1112233566678889999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccch-------hcHHHHHHHHHHH
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPT-------NVRNIAVSFLRQA  174 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~  174 (255)
                      ++..+.++..+.+.+.        +.++.+..++..++.+++.+...+..+++++|..+.       +..|...++.++.
T Consensus       299 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~  370 (444)
T PRK09669        299 WTIVAFVILSALIFFI--------PPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA  370 (444)
T ss_pred             HHHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence            8776655444433333        123445555556667777777888999999999863       2235567778888


Q ss_pred             HHHhhhhhhhHHH
Q 045196          175 LMLGASVSPLLVV  187 (255)
Q Consensus       175 ~~~g~~~~p~~~~  187 (255)
                      ..+|..++|.+.+
T Consensus       371 ~klg~alg~~i~g  383 (444)
T PRK09669        371 IKLGLAIGGAVVG  383 (444)
T ss_pred             HHHHHHHHHHHHH
Confidence            8899988888776

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.38  E-value=3.6e-11  Score=97.66  Aligned_cols=147  Identities=18%  Similarity=0.160  Sum_probs=113.5

Q ss_pred             eeeecccCchhHH-HHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHH
Q 045196           59 QLNVGNLNFNLYF-SVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQL  134 (255)
Q Consensus        59 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (255)
                      +...+.+|.+... .+.+   ...+..++.+++|+++||+|-|+++.++.+..++..++..+.          .+.+.+.
T Consensus        50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa----------~Sl~~L~  119 (511)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG----------TSVWHMQ  119 (511)
T ss_pred             HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence            4445566766554 3333   335777889999999999999999999999999999988887          4677888


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hhcCCCchh---HHHHHHHHHHHHH
Q 045196          135 IIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GRMSPSLSF---LVFGALSIFSGVL  210 (255)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~~~~~~~~---~~~~~~~~~~~~~  210 (255)
                      ++.++.+++.+... ....++...+|+++|+++.|+.+....+|.++++.+.++ ...+|....   ++..+...++.++
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~  198 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence            88889998888887 999999999999999999999999999999999888874 223443322   2333444455566


Q ss_pred             HHHhcc
Q 045196          211 SLWLPE  216 (255)
Q Consensus       211 ~~~~~e  216 (255)
                      .+++|.
T Consensus       199 a~~LP~  204 (511)
T TIGR00806       199 ALFLKR  204 (511)
T ss_pred             HHhCCC
Confidence            678874

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.38  E-value=1.5e-10  Score=94.31  Aligned_cols=153  Identities=15%  Similarity=0.078  Sum_probs=110.7

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccC-chhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLN-FNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      +..+++|+|+...-++..++........+.....++++.| .+.....   .+..+.+++..+..+++..|+|.|+++.+
T Consensus       199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~  278 (400)
T PF03825_consen  199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLL  278 (400)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            4457899988665555555555455554444556677777 3322222   34456788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH----HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHH-HH
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE----GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQAL-ML  177 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~  177 (255)
                      +.+..++-..++....         ++.+......    .+.+...+........++.+..|++.|++++++.+... .+
T Consensus       279 a~~~~~vR~~l~a~~~---------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Gl  349 (400)
T PF03825_consen  279 ALVAYAVRWLLYAYFS---------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGL  349 (400)
T ss_pred             HHHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhH
Confidence            9999998888877762         2333333222    34676677777888899999999999999999987765 58


Q ss_pred             hhhhhhhHHHh
Q 045196          178 GASVSPLLVVV  188 (255)
Q Consensus       178 g~~~~p~~~~~  188 (255)
                      |+.++.++.|+
T Consensus       350 g~~iG~~igG~  360 (400)
T PF03825_consen  350 GGAIGSLIGGW  360 (400)
T ss_pred             HHHHHHHHHHH
Confidence            88888888884

>TIGR00901 2A0125 AmpG-related permease

Probab=99.37  E-value=4.7e-11  Score=96.30  Aligned_cols=154  Identities=10%  Similarity=-0.021  Sum_probs=102.0

Q ss_pred             heeeeecccCchhHHHHHHHHH--HHHHHHHHHHHHHhhc-----chhHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 045196           57 GIQLNVGNLNFNLYFSVALNAL--MEIPAVVIGTVLLSFT-----NRRLLL-SRSAYVAGSASILCTLFSNNNNNKGKGG  128 (255)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~dr~-----grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (255)
                      ..+.+.++.|.+.........+  ... ..+++|+++||+     |||+.+ +.+.++.+++...+.+..       +..
T Consensus        10 ~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~-------~~~   81 (356)
T TIGR00901        10 TLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV-------PST   81 (356)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-------cch
Confidence            3445566777776665544422  222 388999999998     888864 556666666655555442       112


Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcC--------CCchhH
Q 045196          129 GSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMS--------PSLSFL  198 (255)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~--------~~~~~~  198 (255)
                      +.+......++.+.+.+...+...++++|.+|+++|+.+.++......+|.+++|.+.+.  ...+        |+..|+
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~  161 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF  161 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence            333444444445555566667888999999999999999999999889999988888763  2233        666777


Q ss_pred             HHHHHHHHHHHHHHH-hccCC
Q 045196          199 VFGALSIFSGVLSLW-LPETK  218 (255)
Q Consensus       199 ~~~~~~~~~~~~~~~-~~e~~  218 (255)
                      +.+++.+++.++.++ .||..
T Consensus       162 i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       162 WTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHHHHHHHHHHhccCCC
Confidence            777766665554443 46643

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.37  E-value=7.5e-12  Score=105.37  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             ccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           64 NLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        64 ~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      ..|.+....   .....++.+++.++.|+++||+|||+.+..+..+..+..++.....        ..+.+......++.
T Consensus       305 ~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  376 (496)
T PRK03893        305 DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG--------GANVWVLGLLLFFQ  376 (496)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--------ccHHHHHHHHHHHH
Confidence            556554333   2334567788999999999999999998877766555444333321        12222222223332


Q ss_pred             HHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh--hcCCCchhHHHHHH
Q 045196          141 FMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG--RMSPSLSFLVFGAL  203 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~  203 (255)
                      .+...+..+....+++|.+|++.|++++++.+....+|+.++|.+.+..  ..++...+...++.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        377 QMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            3333334466778899999999999999999999999999999998843  33444444444433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.36  E-value=1.5e-11  Score=100.21  Aligned_cols=134  Identities=18%  Similarity=0.148  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC---chHHHHHHHHHHHHHhhhhhhhhhhh
Q 045196           79 MEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGG---SWPQLIIEGVGFMAASTAFDVMYIYC  155 (255)
Q Consensus        79 ~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (255)
                      ...++.++.|+++||+|||+.+..+.++..+..++..+...+.     ...   .+..++..++.+++.+...+....++
T Consensus        47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  121 (394)
T TIGR00883        47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYA-----TIGIWAPILLLLARLIQGFSLGGEWGGAALYL  121 (394)
T ss_pred             HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChh-----hhHHHHHHHHHHHHHHHHhhccccccccHHHh
Confidence            3456889999999999999999999998888877776652000     000   01345556666666666777888999


Q ss_pred             ccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh----------hhcCCCchhHHHHHHHHHHHHHHHHhccC
Q 045196          156 VELFPTNVRNIAVSFLRQALMLGASVSPLLVVV----------GRMSPSLSFLVFGALSIFSGVLSLWLPET  217 (255)
Q Consensus       156 ~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  217 (255)
                      .|.+|+++|+...++......+|.+++|.+...          ...+|+..+++.+.+.+++.++....||+
T Consensus       122 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  193 (394)
T TIGR00883       122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEET  193 (394)
T ss_pred             hhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999998888888888876542          12345556666555555444333445554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.36  E-value=2.7e-11  Score=99.92  Aligned_cols=177  Identities=8%  Similarity=-0.106  Sum_probs=97.4

Q ss_pred             HhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 045196           30 SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAY  105 (255)
Q Consensus        30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~  105 (255)
                      +.+++|.++...+..++.+++.......++.++.+ +|.+......+   ..+...++.++.|+++||+|||+.++++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~   84 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIIS   84 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            45666665555444444444444333333444444 77776555444   445777889999999999999999887655


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCCch--HHHHHHHHHHHHHhhhhhhhhhhhccccc--hhcHHHHHHHHHHHHHHhhhh
Q 045196          106 VAGSASILCTLFSNNNNNKGKGGGSW--PQLIIEGVGFMAASTAFDVMYIYCVELFP--TNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      +.++..........        ...+  .......+.++..+...........++.+  .+.++...|.....+.+|..+
T Consensus        85 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i  156 (420)
T PRK09528         85 GLLVLFGPFFIYVF--------APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWAL  156 (420)
T ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHH
Confidence            54433322111100        0000  01111122222222222222222233322  234566778888888899999


Q ss_pred             hhhHHHh-hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          182 SPLLVVV-GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       182 ~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      +|.+.+. .+.+++..|++.+++++++.++.++.
T Consensus       157 ~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        157 CAFIAGILFNINPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             HHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcc
Confidence            9998884 34466777877777766665555444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.36  E-value=5.4e-12  Score=108.50  Aligned_cols=159  Identities=11%  Similarity=0.132  Sum_probs=111.5

Q ss_pred             eeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc----cCCC---------
Q 045196           60 LNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSN----NNNN---------  123 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~----~~~~---------  123 (255)
                      .+.+.++.+....+.   ...++..++.++.+++.||+|||+++.++.++.++..++.++...    +...         
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence            344455655444333   344677888999999999999999999999998888877665421    0000         


Q ss_pred             ----------C--------------C-CC--C-CchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHH
Q 045196          124 ----------K--------------G-KG--G-GSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQAL  175 (255)
Q Consensus       124 ----------~--------------~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  175 (255)
                                .              . ..  . ....+++..++.+++.+..+++..+++.|.+|++.|+...++.+...
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence                      0              0 00  1 23355677888888888888999999999999999999999999999


Q ss_pred             HHhhhhhhhHHHhhh-c-----------------------CCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          176 MLGASVSPLLVVVGR-M-----------------------SPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       176 ~~g~~~~p~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      .+|..+++.+.++.. .                       .|+..|++.+++.++..+.++++|++.
T Consensus       218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~l  284 (633)
T TIGR00805       218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKAL  284 (633)
T ss_pred             HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            999999988876311 0                       134456666766666655556667653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.36  E-value=2e-11  Score=101.66  Aligned_cols=141  Identities=13%  Similarity=0.037  Sum_probs=98.4

Q ss_pred             cccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHH-HHH
Q 045196           63 GNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLI-IEG  138 (255)
Q Consensus        63 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  138 (255)
                      ..++.+......+   ..++..++.++.|+++||+|||++++.+.++.++..++..+.          ++.+..++ ..+
T Consensus        47 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~  116 (455)
T TIGR00892        47 QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS----------SNVIELYLTAGF  116 (455)
T ss_pred             HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh----------hhHHHHHHHHHH
Confidence            3455543333333   233456678899999999999999999888888777776665          34444433 334


Q ss_pred             HHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          139 VGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      +.+++.+...+....++.+.+| +.|+++.++.+....+|..++|.+.+.  ...+|+..|++.+++.+++.+..+++
T Consensus       117 l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       117 ITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555444566677888886 689999999999999999888887763  44578888888888776665544433

>TIGR00895 2A0115 benzoate transport

Probab=99.36  E-value=3.8e-11  Score=97.99  Aligned_cols=118  Identities=17%  Similarity=0.137  Sum_probs=84.0

Q ss_pred             eecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           61 NVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        61 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      +....+.+....   .....++.+++.++.++++||+|||+.+.. ..+.++...++....         .+.+..+...
T Consensus       276 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~  345 (398)
T TIGR00895       276 LMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTL---------FSPTLLLLLG  345 (398)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHh---------hCHHHHHHHH
Confidence            334445544332   334456778899999999999999954443 333334333333321         3444555556


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      ++.+++.+...+..++++.|.+|++.|+++.|+.+....+|++++|.+.+.
T Consensus       346 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       346 AIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            666777777788899999999999999999999999999999999998863

>PRK03699 putative transporter; Provisional

Probab=99.36  E-value=6.1e-11  Score=96.98  Aligned_cols=143  Identities=12%  Similarity=0.003  Sum_probs=96.9

Q ss_pred             cccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHH
Q 045196           63 GNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGV  139 (255)
Q Consensus        63 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (255)
                      +.++.+......+   ..++..++.++.++++||++||+.+.....+..+..+++...          .+.+...+..++
T Consensus       234 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  303 (394)
T PRK03699        234 KKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT----------DDPSHLLYAILG  303 (394)
T ss_pred             HHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc----------CCchHHHHHHHH
Confidence            4456665444333   345778899999999999999998887776665554444333          233333344455


Q ss_pred             HHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhcc
Q 045196          140 GFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLPE  216 (255)
Q Consensus       140 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e  216 (255)
                      .+++.+..++...++..|..|.+ ++...++....+.+|+.++|.+.++  ...++...++..+++++++.+.....++
T Consensus       304 ~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        304 LGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence            55555666677777778877644 5677888888889999999999884  3456667777777777776655555543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.35  E-value=1.6e-10  Score=92.15  Aligned_cols=178  Identities=15%  Similarity=0.038  Sum_probs=121.8

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchh---HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNL---YFSVALNALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      .+..+++|+|+.+..+....+...++...|.++..++. ..|.+.   .......+++.++|+.++|++.|| +.|+.+.
T Consensus       202 ~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~  280 (394)
T COG2814         202 RTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALI  280 (394)
T ss_pred             hHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHH
Confidence            34667899998777666666666555554444433333 344443   444566788999999999999999 8888888


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      ....+.++..+.+.+..         .+.+..++..++.++..............+ .-++.+..+.++.....++|..+
T Consensus       281 ~~~~l~a~~~l~l~~~~---------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~  350 (394)
T COG2814         281 AALLLLALALLALTFTG---------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIAL  350 (394)
T ss_pred             HHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHH
Confidence            88777777777766653         444555555555555555444455556666 33567899999999999999999


Q ss_pred             hhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          182 SPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       182 ~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      |..+.+.  ...++....++.+++.+++.++.+..
T Consensus       351 GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         351 GAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            9888883  44555566677777777776655444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.35  E-value=6.9e-11  Score=98.79  Aligned_cols=183  Identities=11%  Similarity=0.004  Sum_probs=100.1

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHH-HHhhheeeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHH-
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVG-FVYYGIQLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLL-   99 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~-   99 (255)
                      +.+++++++++..+...+..+....... +..|...+..+.++.+......   +..++.+++.+++|+++||+++|+. 
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~  330 (465)
T TIGR00894       251 SLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTL  330 (465)
T ss_pred             CCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3468888888875544333333332222 2222222223344555444333   3456778899999999999764421 


Q ss_pred             -------HHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHH
Q 045196          100 -------LSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLR  172 (255)
Q Consensus       100 -------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  172 (255)
                             +..+.........++....       ...+.+..+++..+.+++.+...+..+....|..|. .+|.+.++.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~  402 (465)
T TIGR00894       331 SLTAARKIFNGIGGLGPGIFAYALPY-------LSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITG  402 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHH
Confidence                   1111111111111111110       012333334444444444444455566667777776 7999999999


Q ss_pred             HHHHHhhhhhhhHHHhh-hc----CCCchhHHHHHHHHHHHHHHHHhc
Q 045196          173 QALMLGASVSPLLVVVG-RM----SPSLSFLVFGALSIFSGVLSLWLP  215 (255)
Q Consensus       173 ~~~~~g~~~~p~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
                      ..+.++++++|.+.+.. +.    .+...|.+.++..+++.++..+.+
T Consensus       403 ~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       403 LPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            99999999999998842 21    134456666666666665544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.34  E-value=6.6e-11  Score=98.14  Aligned_cols=180  Identities=14%  Similarity=0.058  Sum_probs=95.9

Q ss_pred             hhcChhHHHHHHHHHHHHHHH-HHHhhheeeeec-ccCchhHH---HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 045196           31 LWGTKWAAKRLIMVMTAGFGV-GFVYYGIQLNVG-NLNFNLYF---SVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAY  105 (255)
Q Consensus        31 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~  105 (255)
                      +++++..+...+...+..... .+..|. +.++. ..|.+...   .....++..+++.+++|+++||+++++....+..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  325 (438)
T TIGR00712       247 VLPNKLLWYIAIANVFVYLLRYGVLDWS-PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVF  325 (438)
T ss_pred             HccCchHHHHHHHHHHHHHHHHHHHHhH-HHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHH
Confidence            566766554433333333222 222222 33333 34555433   2334556778899999999999964432222222


Q ss_pred             HHHHH--HHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhh-hhh
Q 045196          106 VAGSA--SILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGA-SVS  182 (255)
Q Consensus       106 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~-~~~  182 (255)
                      ...+.  .+......       +..+.+......+..++...+..........|.+|++.|+++.|+.+..+.+++ +++
T Consensus       326 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~g  398 (438)
T TIGR00712       326 FMTLVTIAVIVYWMN-------PAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA  398 (438)
T ss_pred             HHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhc
Confidence            22111  11111111       111223222222223322222222334567899999999999999998888875 678


Q ss_pred             hhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HHhccCC
Q 045196          183 PLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LWLPETK  218 (255)
Q Consensus       183 p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~  218 (255)
                      |.+.+.  ...++...+.+.+++.+++.+.. +++||.|
T Consensus       399 p~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       399 SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             chhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            998884  33456666776666666665554 4557654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10133 L-fucose transporter; Provisional

Probab=99.33  E-value=1.8e-10  Score=95.41  Aligned_cols=124  Identities=6%  Similarity=-0.097  Sum_probs=93.6

Q ss_pred             heeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHH
Q 045196           57 GIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQ  133 (255)
Q Consensus        57 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (255)
                      ..+.+.+.++.+.....   ....++..++.++.|+++||+|||+++..+..+.++..+++....       ..++.+..
T Consensus        48 ~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-------~a~~~~~l  120 (438)
T PRK10133         48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-------EIMNYTLF  120 (438)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-------hcCCHHHH
Confidence            34445556676654443   334567888999999999999999999999998888876653211       01466677


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          134 LIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ++..++.+++.+...+....++.|..|.+.|....++.+....+|..++|.+..
T Consensus       121 l~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888888888888877777777889999888899988887754

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.33  E-value=4.8e-11  Score=94.45  Aligned_cols=185  Identities=17%  Similarity=0.087  Sum_probs=123.6

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHH-HHHHHhhheeeeecccCchhHHHHHHHHH---HHHHHHHHHHHHHhhcchhHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGF-GVGFVYYGIQLNVGNLNFNLYFSVALNAL---MEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      ..++.++++++.|...+.....+- ...+..+...++..+++.+...+..+...   ...+..+++|+++||+|.++++.
T Consensus       209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~  288 (417)
T COG2223         209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL  288 (417)
T ss_pred             hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH
Confidence            457778888775544333333222 22344444445566778777665544444   44456788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      +....+.++..+..+......   ...+.+..+...+....+.+......+.+++.++|.+ -|.+.|+....+.+|++.
T Consensus       289 ~~f~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~  364 (417)
T COG2223         289 AVFVGMALAAALLSLFLTGFG---HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFF  364 (417)
T ss_pred             HHHHHHHHHHHHHHccccccc---cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-hhHHHHHHHHhccccccc
Confidence            888888888777766531110   0123344444455555567777788999999999874 678899999999999999


Q ss_pred             hhhHHHh--hhcC-CCchhHHHHHHHHHHHHHHHHh
Q 045196          182 SPLLVVV--GRMS-PSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       182 ~p~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      -|...+.  ...+ +...|.++..+.+++.++.+.+
T Consensus       365 lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         365 LPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             hhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998873  2223 4456777777777777766544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.32  E-value=5.9e-11  Score=97.95  Aligned_cols=131  Identities=16%  Similarity=0.148  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q 045196           76 NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYC  155 (255)
Q Consensus        76 ~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (255)
                      ...+.+++.+.+|++.||+|-|+++..+.++.++..++..+..        ....+.+++++++.+++.+..+|....+.
T Consensus        82 ~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa--------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~  153 (466)
T KOG2532|consen   82 FFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA--------SIGFYLLLVLRFLQGLGQGVLFPAIGSIL  153 (466)
T ss_pred             HHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--------HhcchhhHHHHHHhHHHHhHHHhhhhcee
Confidence            3468889999999999999999999999999999988887773        24556778899999999999999999999


Q ss_pred             ccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--h-hcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          156 VELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--G-RMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       156 ~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      ..+.|+++|++..++......+|.+++-.+.++  . ..||...|++.++++++..++++++
T Consensus       154 ~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  154 AKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             eeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998877666664  2 2678899999999988876665443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.32  E-value=6.2e-11  Score=97.02  Aligned_cols=116  Identities=16%  Similarity=0.094  Sum_probs=82.6

Q ss_pred             ccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           64 NLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        64 ~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      ..+.+....   .....++.+++.++.+++.||+|||+.+.++...+.+..+......         .+.+...+..++.
T Consensus       268 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  338 (405)
T TIGR00891       268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG---------ANVAVLGLGLFFQ  338 (405)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC---------CchHHHHHHHHHH
Confidence            345544333   3345567888999999999999999998877765543333322221         2334444443444


Q ss_pred             HHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          141 FMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      +++..+..+....+++|.+|++.|+++.|+.+....+++.++|.+.+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~  386 (405)
T TIGR00891       339 QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL  386 (405)
T ss_pred             HHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            444555667788899999999999999999999999999999999984

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.32  E-value=4e-11  Score=95.00  Aligned_cols=145  Identities=14%  Similarity=0.081  Sum_probs=111.1

Q ss_pred             ccCch---hHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           64 NLNFN---LYFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        64 ~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      .+|.+   ........++.+++|+++.|++.||+|-|+++.++.++..+.++...+.          .......++..+.
T Consensus       282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~----------~~~~~f~i~gll~  351 (438)
T COG2270         282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL----------EGELDFWILGLLV  351 (438)
T ss_pred             HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc----------cccHHHHHHHHHH
Confidence            45554   3445566778889999999999999999999999888887777766665          2344555566677


Q ss_pred             HHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh---hcCCCchhHHHHHHHHHHHHHHHHhccC
Q 045196          141 FMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG---RMSPSLSFLVFGALSIFSGVLSLWLPET  217 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~  217 (255)
                      +.+.++.++..-++..++.|+++-++.+|+++..++..++++|++.+..   ....+..+.....+.+++.++.++.|+.
T Consensus       352 g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         352 GTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            7778889999999999999999999999999999999999999998842   2234445555556666666666666654


Q ss_pred             C
Q 045196          218 K  218 (255)
Q Consensus       218 ~  218 (255)
                      +
T Consensus       432 ~  432 (438)
T COG2270         432 G  432 (438)
T ss_pred             C
Confidence            3

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.31  E-value=3.9e-11  Score=101.35  Aligned_cols=138  Identities=13%  Similarity=0.117  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhh
Q 045196           71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDV  150 (255)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (255)
                      +......++..++.++.|+++|++|||+.++++.+...+..++..+.          .+.+.+++.+++.+++.++...+
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a----------~~~~~l~~GR~l~G~g~G~~~~~  162 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA----------PSWYQLIVGRILTGLGVGGASVL  162 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhccchhhhhhc
Confidence            44455667889999999999999999999999999999999999888          47788889999999999998899


Q ss_pred             hhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hh---cCCCchhHHHHHHHHHHHHHHHHhccCCC
Q 045196          151 MYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GR---MSPSLSFLVFGALSIFSGVLSLWLPETKN  219 (255)
Q Consensus       151 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (255)
                      ...+.+|+.|++.||.-.++.+....+|..++ ++.+. ..   .+|+..+.+..+.+++..+..+++||+.+
T Consensus       163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~  234 (513)
T KOG0254|consen  163 APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPR  234 (513)
T ss_pred             chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            99999999999999999999988888777776 44442 22   25666666666666666666667788644

>PRK11462 putative transporter; Provisional

Probab=99.31  E-value=5.3e-10  Score=93.15  Aligned_cols=154  Identities=9%  Similarity=0.054  Sum_probs=83.6

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHH----HHHhhheeeeecccCchhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGV----GFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNRRLLL  100 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l  100 (255)
                      +..++.+++|+.++..+...++.....    ....|...++...-. ..........+..+++.+++++++||+|+|+.+
T Consensus       218 ~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~  296 (460)
T PRK11462        218 REDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF  296 (460)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence            345677888887554433332332222    222233333322111 111122334567778899999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccc-----hhcHHHHH--HHHHH
Q 045196          101 SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFP-----TNVRNIAV--SFLRQ  173 (255)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r~~~~--~~~~~  173 (255)
                      ..+..+.++..+++.+..        ..+.+..++..++.+++.+...++.+++.+|...     +..|..+.  +...+
T Consensus       297 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f  368 (460)
T PRK11462        297 WWTNALLAVISLAMFFVP--------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLF  368 (460)
T ss_pred             HHHHHHHHHHHHHHHHhc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHH
Confidence            655554444333333331        1222233333344455555556677888888766     23455444  44456


Q ss_pred             HHHHhhhhhhhHHH
Q 045196          174 ALMLGASVSPLLVV  187 (255)
Q Consensus       174 ~~~~g~~~~p~~~~  187 (255)
                      ...+|..+++.+.+
T Consensus       369 ~~Klg~alg~~i~g  382 (460)
T PRK11462        369 VLKLGLAFGGALIG  382 (460)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77788877777665

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.31  E-value=1.1e-10  Score=92.53  Aligned_cols=142  Identities=15%  Similarity=0.060  Sum_probs=101.1

Q ss_pred             cccCchhHHHHHHHH---HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHH
Q 045196           63 GNLNFNLYFSVALNA---LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGV  139 (255)
Q Consensus        63 ~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (255)
                      .+++.+..+...+.+   +...+..++.|.+.||+|-|++..++.++..+.++...+...       ..+.|.++++.++
T Consensus        42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~-------~~~~~~ll~~gll  114 (417)
T COG2223          42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT-------YPSTWQLLVIGLL  114 (417)
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc-------CCchHHHHHHHHH
Confidence            566777666555444   456667899999999999999999999999999988888741       1233555555555


Q ss_pred             HHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcC---CCchhHHHHHHHHHHHHHHHH
Q 045196          140 GFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMS---PSLSFLVFGALSIFSGVLSLW  213 (255)
Q Consensus       140 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~  213 (255)
                      .++ .++.++....++++.||++++|.+.|+.. .+++|..+..++...  ...+   ++....++....++..+..++
T Consensus       115 ~G~-~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~  191 (417)
T COG2223         115 LGL-AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL  191 (417)
T ss_pred             Hhc-ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554 45567899999999999999999999998 888887655554442  2222   555566666666665555443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.31  E-value=2.7e-10  Score=92.66  Aligned_cols=176  Identities=12%  Similarity=-0.007  Sum_probs=99.7

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeee-cccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNV-GNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      ..+++++++++.+...+................+.+. +..+.+.....   ....++.+++.++.+++.||+|||+.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       197 ETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR  276 (385)
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3566778887755444333333322222222222222 34555544332   3345677889999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      .+..+..+..+++......     .....+..+...++.+++.+...+.......|..| +.|+++.++.+.....++.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i  350 (385)
T TIGR00710       277 MGLILFAVSAVLLEITAIL-----GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAI  350 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHH
Confidence            8777666655554433100     00122233333444555566666778888888887 56899999998887654444


Q ss_pred             hhhHHHhhhcCCCchhHHHHHHHHHH
Q 045196          182 SPLLVVVGRMSPSLSFLVFGALSIFS  207 (255)
Q Consensus       182 ~p~~~~~~~~~~~~~~~~~~~~~~~~  207 (255)
                      .+.+.+.........+........+.
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (385)
T TIGR00710       351 VGYLVSLIHGNTAWPMSLSCLVLAVV  376 (385)
T ss_pred             HHHHHHhccccChHHHHHHHHHHHHH
Confidence            44444433333344444444433333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.31  E-value=1e-10  Score=96.78  Aligned_cols=157  Identities=10%  Similarity=0.071  Sum_probs=110.1

Q ss_pred             CCccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCch--hHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 045196           23 NSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFN--LYFSVALNALMEIPAVVIGTVLLSFTNRRLL   99 (255)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~   99 (255)
                      +-+..+++++++|.+++.....++.++..........++.+. .+.+  ......+..+..+++.++.++++||+|+|+.
T Consensus       213 ~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~  292 (428)
T PF13347_consen  213 SLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV  292 (428)
T ss_pred             ccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence            345668889999886665555555545443222222222221 1222  1222234456778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchh-------cHHHHHHHHH
Q 045196          100 LSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTN-------VRNIAVSFLR  172 (255)
Q Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~  172 (255)
                      +..+..+.++..+++.+..        ..+.+..++..++.+++.+..+...+++.+|+.+.+       ..|...|+.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~  364 (428)
T PF13347_consen  293 YIIGLLLAALGFLLLFFLG--------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS  364 (428)
T ss_pred             hhhhHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence            9999999988888877762        246677777888888888888899999999998743       3477778888


Q ss_pred             HHHHHhhhhhhhHHH
Q 045196          173 QALMLGASVSPLLVV  187 (255)
Q Consensus       173 ~~~~~g~~~~p~~~~  187 (255)
                      +...++..+++.+.+
T Consensus       365 ~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  365 FFIKIGQGLAGAIVG  379 (428)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            888888888877665

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.30  E-value=2.5e-10  Score=91.93  Aligned_cols=181  Identities=12%  Similarity=0.091  Sum_probs=121.5

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHH-----HhhheeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGF-----VYYGIQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRL   98 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~   98 (255)
                      +..+++|.|++|...+...........     ..|...+ .++.+.+....   ..+..+.+++...+.+++.+|+|.|+
T Consensus       212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~-f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~  290 (412)
T PF01306_consen  212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASF-FQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN  290 (412)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh
Confidence            456788999877655544444333222     2222111 22222222222   22334577888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHH-HHHHHH
Q 045196           99 LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFL-RQALML  177 (255)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~  177 (255)
                      .++++..++++-....++.          ++.+.+...-.+.++-.........-|+++.+|++..++...+. +....+
T Consensus       291 ~Lllag~i~~iRi~~~~~~----------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~  360 (412)
T PF01306_consen  291 LLLLAGVIMAIRIIGSGFA----------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQI  360 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHT------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhhh----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHH
Confidence            9999999999998888887          57788888888888877777788899999999999999988886 455568


Q ss_pred             hhhhhhhHHH--hhhcCCCchhHHHHHHHHHHHHHH-HHhccCC
Q 045196          178 GASVSPLLVV--VGRMSPSLSFLVFGALSIFSGVLS-LWLPETK  218 (255)
Q Consensus       178 g~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~  218 (255)
                      +.++.+.+.|  ++..+....+++.+.+.++..++. +.+++.+
T Consensus       361 ~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  361 GIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            8887777777  355556667888877766666554 4455443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.30  E-value=2.1e-10  Score=94.15  Aligned_cols=182  Identities=12%  Similarity=0.089  Sum_probs=100.4

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHH-hhheeeeecccCchhHHHHHHH---H-HHHHHHHHHHHHHHhhcchhHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFV-YYGIQLNVGNLNFNLYFSVALN---A-LMEIPAVVIGTVLLSFTNRRLLL  100 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~dr~grr~~l  100 (255)
                      .++++++|+|.++..+...++........ .+..++.....|.+......+.   + ++.+++.++++++.||+|||+.+
T Consensus       200 ~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l  279 (402)
T PRK11902        200 GPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL  279 (402)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            46778888887554444333333322211 1222233444666655443333   2 34678899999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH----HHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH
Q 045196          101 SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG----VGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM  176 (255)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  176 (255)
                      .++..+..+..+.+.....      ..++.+..++..+    ..++..+...+....++.+.+|.+.++    +.+....
T Consensus       280 ~~~~~~~~l~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  349 (402)
T PRK11902        280 MLFGVLQAVSNLGYWVLAV------TPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALAS  349 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHH
Confidence            7766665555443322110      0023343333332    333344455667777888888866544    3333444


Q ss_pred             HhhhhhhhHHH--hhhcCCCchhHHHHHHHHHHHHHHHHhccC
Q 045196          177 LGASVSPLLVV--VGRMSPSLSFLVFGALSIFSGVLSLWLPET  217 (255)
Q Consensus       177 ~g~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  217 (255)
                      ++...++.+.+  ....++...|.+.+++++++.++....+.+
T Consensus       350 l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        350 VGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            55543444455  244566666777777777766655555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.29  E-value=8.1e-11  Score=98.29  Aligned_cols=177  Identities=15%  Similarity=0.081  Sum_probs=128.9

Q ss_pred             HHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHH
Q 045196           29 ESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTN--RRLLLSRS  103 (255)
Q Consensus        29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g--rr~~l~~~  103 (255)
                      .++++++.++...+-..+..+.....++.++.+..+.+.+....   ..+.++..+++.++.|++.|+..  ++.+..++
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~  371 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLT  371 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHH
Confidence            57888876554444444444444444444455555666654443   34456788899999999999987  45556677


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhh
Q 045196          104 AYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSP  183 (255)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p  183 (255)
                      .++++++.+.+.+.          .+++.++....+.+++.+...+....++.|+.+.+.-..+.|+...+..++.+++|
T Consensus       372 ll~~gl~~~~~p~~----------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gp  441 (509)
T KOG2504|consen  372 LLIAGLARLFLPFA----------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGP  441 (509)
T ss_pred             HHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence            77777776565555          46677777788888888887788888999999999999999999999999999999


Q ss_pred             hHHHh--hhc-CCCchhHHHHHHHHHHHHHHHHhc
Q 045196          184 LLVVV--GRM-SPSLSFLVFGALSIFSGVLSLWLP  215 (255)
Q Consensus       184 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
                      .+.++  ... .+...|...+++.+++.++++..|
T Consensus       442 Piag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  442 PIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99984  222 366678888888888877766666

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.28  E-value=1.5e-10  Score=93.71  Aligned_cols=155  Identities=12%  Similarity=-0.080  Sum_probs=86.5

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHH-HHhhheeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcc-hhHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVG-FVYYGIQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTN-RRLLLS  101 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g-rr~~l~  101 (255)
                      .++++++++..+...+..+....... +..+...+..+..+.+....   .....++.+++.++.+++.||.. ||+...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~  287 (379)
T TIGR00881       208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL  287 (379)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH
Confidence            35566777765544333333333322 22222222223445544333   33445677889999999999863 333222


Q ss_pred             -HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhh
Q 045196          102 -RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGAS  180 (255)
Q Consensus       102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  180 (255)
                       ..........+......       +..+.+...+..++.+++..+..+..+.+..|.+|++.|+++.|+.+....+|+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  360 (379)
T TIGR00881       288 AVFFMALIIVSLLVYWLN-------PAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI  360 (379)
T ss_pred             HHHHHHHHHHHHHHHhcC-------cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh
Confidence             22211111111111110       1122233333334444444445566678899999999999999999999999999


Q ss_pred             hhhhHHHh
Q 045196          181 VSPLLVVV  188 (255)
Q Consensus       181 ~~p~~~~~  188 (255)
                      ++|.+.+.
T Consensus       361 ~~~~~~g~  368 (379)
T TIGR00881       361 LAGLPLGY  368 (379)
T ss_pred             hhhhhHHH
Confidence            99998874

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.28  E-value=1.7e-14  Score=119.89  Aligned_cols=140  Identities=21%  Similarity=0.172  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           73 VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      .....++.++|++++|+++||+|||+.+.++.++..+..++..+..       ...+.+.+.+..++.+++.++..+...
T Consensus        52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP-------SYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHhhhcccccccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccc
Confidence            3445568889999999999999999999999999888888877762       011677778888899998888889999


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh----h-hcCCCchhHHHHHHHHHHHHHHHHhccCCC
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV----G-RMSPSLSFLVFGALSIFSGVLSLWLPETKN  219 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (255)
                      .++.|..|++.|+...++.+....+|..++..+...    . ...|+..+.+.++..++..+..+++||+..
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~  196 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPR  196 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999998888887777766655431    1 123566666666666555555677898744

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.27  E-value=3.3e-11  Score=96.71  Aligned_cols=149  Identities=16%  Similarity=0.085  Sum_probs=95.7

Q ss_pred             hHHhhcChhHHHHHHHHHHHHHHHHHHhhheeee-ecccCch-hHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           28 NESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN-VGNLNFN-LYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      ++.+++++..+...+..+...+.........+.+ .+.++.+ .....   .+..+..+++.++.++++||+++|+...+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (352)
T PF07690_consen  199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLI  278 (352)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            5666666654422222222222322222223333 4455656 44443   33445666778999999999998877777


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                      ......+..+.+.....       ..+....+...++.+++.+...+....+..|.+|++.|+++.|+.+....+++.++
T Consensus       279 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  279 AILLLILGALGLLLLPF-------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             HHHHHHHHHHHHCCSHH-------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            66666655555444320       01233444455556667777789999999999999999999999999999999998


Q ss_pred             h
Q 045196          183 P  183 (255)
Q Consensus       183 p  183 (255)
                      |
T Consensus       352 P  352 (352)
T PF07690_consen  352 P  352 (352)
T ss_dssp             H
T ss_pred             C
Confidence            7

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10133 L-fucose transporter; Provisional

Probab=99.26  E-value=1.1e-09  Score=90.65  Aligned_cols=150  Identities=13%  Similarity=0.087  Sum_probs=95.8

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHH-HHhhheeeeec-ccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVG-FVYYGIQLNVG-NLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLL  100 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l  100 (255)
                      .+.++++++|.++...+..++...... ...|...+..+ ..+.+.....   ....++.++|.++++++.||+|||+++
T Consensus       249 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l  328 (438)
T PRK10133        249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL  328 (438)
T ss_pred             hhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            346678888876554333333222222 12222222223 4566654443   445567888999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhh
Q 045196          101 SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGAS  180 (255)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  180 (255)
                      ..+..+..+.+++..+.          ... ..+....+.+++.+..+|..++...|.+|++ .+++.++... ..+|+.
T Consensus       329 ~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~  395 (438)
T PRK10133        329 AAYALIAMALCLISAFA----------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGG  395 (438)
T ss_pred             HHHHHHHHHHHHHHHHc----------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-Hhccch
Confidence            88877665555444433          122 2344556677788888999999999998864 5677777753 446777


Q ss_pred             hhhhHHHh
Q 045196          181 VSPLLVVV  188 (255)
Q Consensus       181 ~~p~~~~~  188 (255)
                      ++|.+.+.
T Consensus       396 ~~~~i~G~  403 (438)
T PRK10133        396 IVTPVMGF  403 (438)
T ss_pred             HHHHHHHH
Confidence            88877774

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.26  E-value=3.2e-10  Score=93.28  Aligned_cols=105  Identities=15%  Similarity=0.135  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLL-LSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      ....++.+++.++.|+++||++||+. ........++.. ++....         ......+...++..++.....+..+
T Consensus       286 ~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~  355 (412)
T TIGR02332       286 AIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASAT---------DHNLIQLLGIIMASMGSFSAMAIFW  355 (412)
T ss_pred             hHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhc---------CCHHHHHHHHHHHHHHhhhhhhHHH
Confidence            44456788899999999999997764 333333333332 222211         1222222222222222222334556


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      ....|.+|++.|+++.|+.+..+++|++++|.+.+.
T Consensus       356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~  391 (412)
T TIGR02332       356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI  391 (412)
T ss_pred             hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            677888999999999999999999999999998874

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.25  E-value=4.1e-10  Score=93.16  Aligned_cols=160  Identities=13%  Similarity=0.025  Sum_probs=96.8

Q ss_pred             eeeecccCchhHHHHHH---HHHHHHHHHHHHHHHHh----hcchhHHHHHH-HHHHHHHHHHHHHhcccC---CCCCCC
Q 045196           59 QLNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLS----FTNRRLLLSRS-AYVAGSASILCTLFSNNN---NNKGKG  127 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~d----r~grr~~l~~~-~~~~~~~~~~~~~~~~~~---~~~~~~  127 (255)
                      +.++..+|.+......+   ..+..++..++.|+++|    |+|||+.++++ .....++.+++.+.....   .++.+.
T Consensus        28 ~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~  107 (477)
T TIGR01301        28 TPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDK  107 (477)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccc
Confidence            34566677776555444   34566778899999999    59999988775 444444545554432100   000000


Q ss_pred             CC-c---hHHHHHHHHHHHHHhhhhhhhhhhhccccchhcH--HHHHHHHHHHHHHhhhhhhhHHHhhh----c------
Q 045196          128 GG-S---WPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVR--NIAVSFLRQALMLGASVSPLLVVVGR----M------  191 (255)
Q Consensus       128 ~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~g~~~~p~~~~~~~----~------  191 (255)
                      .+ .   +..++...+..++.....+...++++|++|+++|  +.+.++.+...++|+++++.+.++..    .      
T Consensus       108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~  187 (477)
T TIGR01301       108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE  187 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence            11 1   1222223333445555667788999999998865  57888888888999999888776321    0      


Q ss_pred             -------CCCchhHHHHHHHHHHHHHH-HHhccCC
Q 045196          192 -------SPSLSFLVFGALSIFSGVLS-LWLPETK  218 (255)
Q Consensus       192 -------~~~~~~~~~~~~~~~~~~~~-~~~~e~~  218 (255)
                             +....|++.+++.+++.++. +..+|..
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                   22345666666666665554 4557754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.25  E-value=4.2e-10  Score=94.48  Aligned_cols=176  Identities=16%  Similarity=0.062  Sum_probs=116.2

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      .++-+.++|..+..++...+..++.....-.++.+.. .++.+....   ....+++.++|.++.+++.+|+++++++..
T Consensus       210 G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~  289 (524)
T PF05977_consen  210 GLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLL  289 (524)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHH
Confidence            4444555665443333333322222222222233332 345444333   334567888899999999999999888888


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                      +.++.+++.+.+.+.          .+.+...+..++.+++.........+...+..|.+.||++.++..+....+..+|
T Consensus       290 ~~~~~a~~~~~lal~----------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lG  359 (524)
T PF05977_consen  290 ASLLFALALLLLALS----------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLG  359 (524)
T ss_pred             HHHHHHHHHHHHhcc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHH
Confidence            888888777777665          4666666677777777777777788899999999999999999998888888888


Q ss_pred             hhHHHh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196          183 PLLVVV--GRMSPSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       183 p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  212 (255)
                      .++.|.  ...+....+.+.++..+++.++..
T Consensus       360 sll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  360 SLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            888874  334455556655555555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.24  E-value=1e-09  Score=89.24  Aligned_cols=155  Identities=15%  Similarity=0.073  Sum_probs=83.7

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHH-HHhhheeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVG-FVYYGIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      +++++++++..+...+...+...... ...+...++.+..+.+.....   ....++.+++.++.+++.||+|||+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  265 (377)
T PRK11102        186 NFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRF  265 (377)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            45667777764433322222221111 111111223344555543332   33456777889999999999999999888


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHH-HHhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQAL-MLGASV  181 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~~  181 (255)
                      +..+..+..+.......      .....+...+...+...+.+...+....+..|..| +.|+++.++.+... .++..+
T Consensus       266 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~  338 (377)
T PRK11102        266 GLWIQFIMGIWLVVSAL------LDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIV  338 (377)
T ss_pred             HHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHH
Confidence            77665444333322210      00223333333323333333344455566778777 67899999887665 366667


Q ss_pred             hhhHHHh
Q 045196          182 SPLLVVV  188 (255)
Q Consensus       182 ~p~~~~~  188 (255)
                      ++++...
T Consensus       339 g~~~~~~  345 (377)
T PRK11102        339 GALLSLA  345 (377)
T ss_pred             HHHHHhc
Confidence            7766543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.24  E-value=2.4e-10  Score=105.52  Aligned_cols=152  Identities=10%  Similarity=-0.128  Sum_probs=101.9

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhhee-eeecccCchhH-H---HHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQ-LNVGNLNFNLY-F---SVALNALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      .++.+++++.++..++...+.++........++ +....++.+.. .   .....+++.+++.++.++++||+++++.+.
T Consensus       224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~  303 (1146)
T PRK08633        224 NLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVP  303 (1146)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchh
Confidence            456677777655444444444333322222222 22333454433 2   233345677889999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      ++.++.+++.+++.+.          .+.+..++..++.+++.+...+...+++.+..|++.||+++|+.+++..+|.++
T Consensus       304 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~  373 (1146)
T PRK08633        304 LGALGLALSLFLLPTA----------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL  373 (1146)
T ss_pred             HHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH
Confidence            8777777666666554          344555555566666666667788899999999999999999999999988877


Q ss_pred             hhhHHHh
Q 045196          182 SPLLVVV  188 (255)
Q Consensus       182 ~p~~~~~  188 (255)
                      ++.+.+.
T Consensus       374 ~~~~~~~  380 (1146)
T PRK08633        374 FLALTTL  380 (1146)
T ss_pred             HHHHHHH
Confidence            7766653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.24  E-value=2.6e-10  Score=93.31  Aligned_cols=173  Identities=7%  Similarity=-0.112  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhheeeee-cccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 045196           35 KWAAKRLIMVMTAGFGVGFVYYGIQLNV-GNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSA  110 (255)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~  110 (255)
                      |.++......++.+.........++.++ +.++.+......   +..+...++.++.|+++||+|||+.++.+....++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3334433344444444333332333333 345766554443   345677888999999999999999998776655443


Q ss_pred             HHHHHHhcccCCCCCCC--CCch-HHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          111 SILCTLFSNNNNNKGKG--GGSW-PQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       111 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ..........     +.  ...+ ...+..++.+++.+...+....+..|..+  .++...+.....+.+|.+++|.+.+
T Consensus        82 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g  154 (396)
T TIGR00882        82 FAPFFIYVFG-----PLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAG  154 (396)
T ss_pred             HHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHh
Confidence            3322111000     00  0011 11222233333334344445455544322  2344567777778888899998887


Q ss_pred             h-hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          188 V-GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       188 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      . ...+++.+|++.+++.++..++.+..
T Consensus       155 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       155 ILFSIDPQIVFWLGSGFALILMLLLMFA  182 (396)
T ss_pred             hhhccCchHHHHHHHHHHHHHHHHHHHh
Confidence            4 34567777877777777665554443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.24  E-value=7.8e-10  Score=91.73  Aligned_cols=140  Identities=13%  Similarity=0.054  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhh
Q 045196           70 YFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFD  149 (255)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (255)
                      .....+..++.+++.+.++.+.||++-.+.+....+..++..++....          .+.+.++++.++.+++.+..+|
T Consensus        84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~----------~s~~~~ialr~llGl~es~~wP  153 (495)
T KOG2533|consen   84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV----------HSFPGLIALRFLLGLFESGGWP  153 (495)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHhcccch
Confidence            344455667889999999999999997777666666666655555554          5788889999999999999999


Q ss_pred             hhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--------hhcCCCchhHHHHHHHHHHHHHH-HHhccCCC
Q 045196          150 VMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--------GRMSPSLSFLVFGALSIFSGVLS-LWLPETKN  219 (255)
Q Consensus       150 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~  219 (255)
                      ....+++..|..++|+.-+|+.+....+|+++++++...        ...+|++.|++-++++++..++. +++|+...
T Consensus       154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            999999999999999999999999999999998888753        34578999999999888877665 46675433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.23  E-value=1.2e-09  Score=89.36  Aligned_cols=170  Identities=17%  Similarity=0.121  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhheeee-ecccCchhHHHHHHHH---H-HHHHHHHHHHHHHhhcchhHHHH-HHHHHHHHHH
Q 045196           38 AKRLIMVMTAGFGVGFVYYGIQLN-VGNLNFNLYFSVALNA---L-MEIPAVVIGTVLLSFTNRRLLLS-RSAYVAGSAS  111 (255)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~-~~~~~~~~~g~l~dr~grr~~l~-~~~~~~~~~~  111 (255)
                      +..++..++..+...+....++.+ .++++.+......+.+   + ..+.+.+.+++ .||+|||+.++ .+.+..++..
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~   96 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC   96 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence            333444444444444444444443 4566776665554432   2 33345555566 99999988754 4444444444


Q ss_pred             HHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHH--HHHHHHHHHHHHhhhhhhhHHHh-
Q 045196          112 ILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRN--IAVSFLRQALMLGASVSPLLVVV-  188 (255)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~~~~~~~~~~g~~~~p~~~~~-  188 (255)
                      .+..+.          ++.+..++...+.+.......+....+..|..+++.|.  ...++.+....+|.+++|.+.+. 
T Consensus        97 ~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l  166 (393)
T PRK15011         97 TLFAWN----------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL  166 (393)
T ss_pred             HHHHHh----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            444443          34444333333333333445567777777777665553  33467777888999999999884 


Q ss_pred             -hhcCCCchhHHHHHHHHHHHHHH-HHhccCC
Q 045196          189 -GRMSPSLSFLVFGALSIFSGVLS-LWLPETK  218 (255)
Q Consensus       189 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~  218 (255)
                       ...+|+..|++.++.+++..+.. +++||.+
T Consensus       167 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        167 AMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence             34578888888777766665544 4567654

>TIGR01272 gluP glucose/galactose transporter

Probab=99.23  E-value=2.4e-09  Score=84.59  Aligned_cols=121  Identities=17%  Similarity=0.173  Sum_probs=81.8

Q ss_pred             cCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHH
Q 045196           65 LNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGF  141 (255)
Q Consensus        65 ~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (255)
                      ++.+....   ......+.++|.+++++++||+|+|+.+.++..++.+..++....          .. .......++.+
T Consensus       173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~----------~~-~~~~~~~~l~g  241 (310)
T TIGR01272       173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT----------HG-YVAMWFVLALG  241 (310)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc----------CC-HHHHHHHHHHH
Confidence            35554333   233445778899999999999999998887777666655444333          22 22223444566


Q ss_pred             HHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhH
Q 045196          142 MAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFL  198 (255)
Q Consensus       142 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~  198 (255)
                      ++.+..+|...+...+.+|++ .+++.++. ..+.+|+++.|.+.|.  +..+...+++
T Consensus       242 ~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       242 LFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            778888899999999988865 45666664 5677999999998884  3345555554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.22  E-value=1.5e-10  Score=93.33  Aligned_cols=117  Identities=10%  Similarity=0.010  Sum_probs=77.8

Q ss_pred             eeecccCchhHHHHHHH---H-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCchHHH
Q 045196           60 LNVGNLNFNLYFSVALN---A-LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNN-NKGKGGGSWPQL  134 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  134 (255)
                      .+..+.|.+......+.   + +..+++.++++++.||+|||+.++++.++.++...+..+...... .+....+.+...
T Consensus       234 ~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (356)
T TIGR00901       234 LFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLF  313 (356)
T ss_pred             HHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence            33444666654443322   2 356689999999999999999988888777766555444310000 000001234455


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH
Q 045196          135 IIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM  176 (255)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  176 (255)
                      ...++..++.+...+...++..|.+|++.||+.+|+.+...+
T Consensus       314 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       314 LTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            555566667777889999999999999999999999887654

>PRK11043 putative transporter; Provisional

Probab=99.22  E-value=1.9e-09  Score=88.47  Aligned_cols=158  Identities=13%  Similarity=-0.017  Sum_probs=91.5

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      +.++++++++++++...+................+.+.+..+.+......   ...++.++|.++.+++.||+|+|+.+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~  272 (401)
T PRK11043        193 ALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLP  272 (401)
T ss_pred             HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            34677888888755443333222221111111123344445665443332   234566778888999999999998765


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      ......+++.+.+......     .....+..++...+.+++.+...+.......|..|. .|+++.|+.+.....++..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~  346 (401)
T PRK11043        273 WLLVLFAVSVIAIWLASLL-----SHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFL  346 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHH
Confidence            5554444433332221100     012333333334445555566667777777777774 6999999999988888888


Q ss_pred             hhhHHHh
Q 045196          182 SPLLVVV  188 (255)
Q Consensus       182 ~p~~~~~  188 (255)
                      ++.+.+.
T Consensus       347 ~~~~~g~  353 (401)
T PRK11043        347 ASLLVSA  353 (401)
T ss_pred             HHHHHHH
Confidence            8887773

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.21  E-value=8e-10  Score=92.81  Aligned_cols=152  Identities=11%  Similarity=0.043  Sum_probs=100.5

Q ss_pred             HhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 045196           30 SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAY  105 (255)
Q Consensus        30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~  105 (255)
                      ++++++.++...+..++..+......+..+.+.. ..+.+.....   ....++.+++.++.|++.||+|||+.+.++..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~  329 (485)
T TIGR00711       250 RLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLI  329 (485)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence            5677776555444444444433333333343433 3465554433   33456778899999999999999999888887


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhH
Q 045196          106 VAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLL  185 (255)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~  185 (255)
                      +.++...++.+...      +..+.+......++.+++.+...+.......+..|++.|+++.|+.+....+|+.+++.+
T Consensus       330 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i  403 (485)
T TIGR00711       330 LYAVGFYWRAFTFT------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTAL  403 (485)
T ss_pred             HHHHHHHHHhccCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            77776666552210      112334444445556666666556666677788999999999999999999999999888


Q ss_pred             HH
Q 045196          186 VV  187 (255)
Q Consensus       186 ~~  187 (255)
                      .+
T Consensus       404 ~g  405 (485)
T TIGR00711       404 IT  405 (485)
T ss_pred             HH
Confidence            77

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.20  E-value=8.3e-10  Score=90.28  Aligned_cols=173  Identities=11%  Similarity=-0.040  Sum_probs=105.0

Q ss_pred             hHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 045196           28 NESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRS  103 (255)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~  103 (255)
                      ++.++++|..+..++...+.+.+.....+..+.|.+. ++.+.....   ...+++.++++++.+++.||.++|+.+..+
T Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g  277 (393)
T PRK11195        198 CRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAG  277 (393)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence            4566777765544444333344333334444444443 455544333   334567788999999999999988877776


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhc-HHHHHHHHHHHHHHhhhhh
Q 045196          104 AYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNV-RNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~  182 (255)
                      .. .++..+.+...          ++.+..+...++.+++.+...+...+...+..|++. +|++.++.+....++..++
T Consensus       278 ~~-~~~~~~~~~~~----------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~  346 (393)
T PRK11195        278 IL-MGLVVLLMALQ----------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLM  346 (393)
T ss_pred             HH-HHHHHHHHHHH----------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHH
Confidence            43 33333333332          234444444555555555555667777788766655 7999999999999998888


Q ss_pred             hhHHHh-hhcCCCchhHHHHHHHHHHHHHH
Q 045196          183 PLLVVV-GRMSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       183 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      ..+.+. ...+....+.+.+...+++..+.
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK11195        347 LGLYSLLVKLGVPVVAVIVGFGLLVALAMA  376 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            887773 44555555555555444444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.19  E-value=2.6e-09  Score=87.76  Aligned_cols=157  Identities=9%  Similarity=-0.117  Sum_probs=90.5

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeee-ecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN-VGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      .++++++++|..+.......+............+.+ ...++.+.....   ....++.+++.++.++++||+++|+.+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~  285 (406)
T PRK15402        206 RDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIR  285 (406)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            345677888775543333222222111111111222 233455543322   2233467788999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      ++..+..+..+++......     ...+.+..++..++.+++.+...+......... +++.|++..++.+....++..+
T Consensus       286 ~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~  359 (406)
T PRK15402        286 MGLWPMVAGLLLAALATVI-----SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTV  359 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHc-----ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHH
Confidence            8877666655555443100     012333334444445555554444444444333 3478999999999999999999


Q ss_pred             hhhHHHh
Q 045196          182 SPLLVVV  188 (255)
Q Consensus       182 ~p~~~~~  188 (255)
                      ++.+.+.
T Consensus       360 g~~~~~~  366 (406)
T PRK15402        360 GIELSKH  366 (406)
T ss_pred             HHHHHHh
Confidence            9988884

>TIGR00896 CynX cyanate transporter

Probab=99.19  E-value=1.5e-09  Score=87.51  Aligned_cols=151  Identities=11%  Similarity=-0.068  Sum_probs=92.1

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhc-chhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFT-NRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~-grr~~l~~  102 (255)
                      ..++++|+|..+...+...+............+.+.++.+.+....   .....++.+++.++.|++.||+ +||+.+.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~  268 (355)
T TIGR00896       189 TPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAV  268 (355)
T ss_pred             CCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Confidence            4566788876554333333222222222122234444556654333   3344567888999999999999 56666667


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhcccc-chhcHHHHHHHHHHHHHHhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELF-PTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      +..+++++.+.+.+..          +..... ...+.+++.+...+.....+.+.. +++.++...++.+..+.+++++
T Consensus       269 ~~~~~~~~~~~~~~~~----------~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  337 (355)
T TIGR00896       269 LAVLQLVGLCGLLFAP----------MHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL  337 (355)
T ss_pred             HHHHHHHHHHHHHHhh----------hhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666655555441          122222 234455566666666666665444 4667789999999999999999


Q ss_pred             hhhHHHh
Q 045196          182 SPLLVVV  188 (255)
Q Consensus       182 ~p~~~~~  188 (255)
                      +|.+.+.
T Consensus       338 gp~~~G~  344 (355)
T TIGR00896       338 GPLFVGV  344 (355)
T ss_pred             HHHHHHH
Confidence            9998884

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.18  E-value=2.4e-09  Score=87.80  Aligned_cols=153  Identities=8%  Similarity=-0.048  Sum_probs=88.1

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHHH---HHHHHHHHHHHHHHHH-hhcchhHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVAL---NALMEIPAVVIGTVLL-SFTNRRLLLS  101 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~-dr~grr~~l~  101 (255)
                      .+++++++++.++...+................+.+.++.+.+......+   .++....+....+++. ||++.++.+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  278 (400)
T PRK11646        199 EGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLM  278 (400)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            45677888876543322222222111111122344444433333332222   2233333344445555 4566666666


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      .+..+.++..+++...          ++.+...+...+.+.+.+...+...+++.|..|++.|+++.|+.+....+|..+
T Consensus       279 ~~~~~~~~~~~~l~~~----------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i  348 (400)
T PRK11646        279 AGLLIMSLSMFPIGMV----------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAI  348 (400)
T ss_pred             HHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHh
Confidence            6666666665555444          234434333344444455555777889999999999999999999999999999


Q ss_pred             hhhHHHh
Q 045196          182 SPLLVVV  188 (255)
Q Consensus       182 ~p~~~~~  188 (255)
                      +|.+.+.
T Consensus       349 g~~l~G~  355 (400)
T PRK11646        349 GYIGGGW  355 (400)
T ss_pred             cccchHH
Confidence            9998884

>TIGR00896 CynX cyanate transporter

Probab=99.18  E-value=8.4e-10  Score=89.02  Aligned_cols=115  Identities=11%  Similarity=0.016  Sum_probs=84.5

Q ss_pred             eecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           61 NVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        61 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      +.++++.+......   ...++..++.++.|+++||+|||+.+.++.++..+..+.. ..          ++.+..++..
T Consensus        26 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~----------~~~~~l~~~~   94 (355)
T TIGR00896        26 IRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA----------PGTALLFAGT   94 (355)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh----------ccHHHHHHHH
Confidence            34455665544433   3456778899999999999999999998887766655554 33          3455556666


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ++.+++.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+
T Consensus        95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~  143 (355)
T TIGR00896        95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATV  143 (355)
T ss_pred             HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66676666656667777888887 57999999999988898888887766

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.16  E-value=5.8e-09  Score=85.73  Aligned_cols=98  Identities=17%  Similarity=0.180  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 045196           78 LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVE  157 (255)
Q Consensus        78 ~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  157 (255)
                      ....+|.++++++.||+++|+.+.++..++.+++++....          +... ......+.+++.+..+|..++...+
T Consensus       280 ~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~----------~~~~-~~~~l~~~glf~s~~fp~i~sl~~~  348 (410)
T TIGR00885       280 VIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA----------GGHV-GLYCLTLCSAFMSLMFPTIYGIALK  348 (410)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc----------CChH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999888888887777776665          2222 3444555566777788999999999


Q ss_pred             ccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          158 LFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       158 ~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      ..+++.+..+.++....  +|+.+.|.+.+.
T Consensus       349 ~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~  377 (410)
T TIGR00885       349 GLGQDTKYGAAGLVMAI--IGGGIVPPLQGF  377 (410)
T ss_pred             hhhhhhhhhHHHHHHHH--hccchHHHHHHH
Confidence            99987665555555543  899999999884

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.16  E-value=5.3e-09  Score=85.57  Aligned_cols=156  Identities=13%  Similarity=0.088  Sum_probs=86.5

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHH
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLL  100 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l  100 (255)
                      +..++++++++..+...+..+.............+.+..+ ++.+......+   ..++.+++.++.+++.||++|+...
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  276 (394)
T PRK11652        197 LASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ  276 (394)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4457778888875543333332222222211122223333 55554443322   3345566677777777777743333


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhh
Q 045196          101 SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGAS  180 (255)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  180 (255)
                      ..................       ...+.+......++.+++.+...+....+..|.+| +.++++.++.+....+|+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~  348 (394)
T PRK11652        277 SVICCLLAGLLMWIPGWF-------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSG  348 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHH
Confidence            222222221111111110       01234444555555666666677888888889887 4689999999999999999


Q ss_pred             hhhhHHHh
Q 045196          181 VSPLLVVV  188 (255)
Q Consensus       181 ~~p~~~~~  188 (255)
                      +++.+.+.
T Consensus       349 ~~~~~~~~  356 (394)
T PRK11652        349 LAALLSAM  356 (394)
T ss_pred             HHHHHHHH
Confidence            99998874

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.15  E-value=1.8e-10  Score=93.25  Aligned_cols=168  Identities=15%  Similarity=0.155  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHhhheeee---------ecccCchhHHHHHHHHH---HHHHHHHHHHHHHhhc-chhHHHHHHHHH
Q 045196           40 RLIMVMTAGFGVGFVYYGIQLN---------VGNLNFNLYFSVALNAL---MEIPAVVIGTVLLSFT-NRRLLLSRSAYV  106 (255)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr~-grr~~l~~~~~~  106 (255)
                      .+...+..-+.--+.||++...         .+.+|.+...+..+.+.   .--...+++||++||+ |+|+.++.+.++
T Consensus        22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail  101 (498)
T COG3104          22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAIL  101 (498)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            3555555666666666665411         11234665555444332   1123678999999995 999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhc--HHHHHHHHHHHHHHhhhhhhh
Q 045196          107 AGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNV--RNIAVSFLRQALMLGASVSPL  184 (255)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~p~  184 (255)
                      .++..+++....        ......+.+...+...+.+..=+....++.|++|++.  |-.++++.+...++|++++|+
T Consensus       102 ~~iGh~~L~~~~--------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~  173 (498)
T COG3104         102 MAIGHLVLAISS--------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI  173 (498)
T ss_pred             HHHHHHHHhccc--------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence            999998887751        0123334444444446677777899999999998643  778888889999999999999


Q ss_pred             HHHh--hhcCCCchhHHHHHHHHHHHHHHHHhc
Q 045196          185 LVVV--GRMSPSLSFLVFGALSIFSGVLSLWLP  215 (255)
Q Consensus       185 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
                      +.++  ...+++..|...++-..++.+.....+
T Consensus       174 i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         174 ITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9985  445666677777777777766555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.15  E-value=2e-09  Score=87.79  Aligned_cols=155  Identities=8%  Similarity=-0.041  Sum_probs=96.4

Q ss_pred             HHHHHHhhheeeeecccCchhHHHHHHHH---HHHHHHHHHHHHHHhhcchhH----HHHHHHHHHHHHHHHHHHhcccC
Q 045196           49 FGVGFVYYGIQLNVGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSFTNRRL----LLSRSAYVAGSASILCTLFSNNN  121 (255)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~grr~----~l~~~~~~~~~~~~~~~~~~~~~  121 (255)
                      ++..+....++.+..+.+.+......+.+   +...++.++.|.++||+|||.    .+.+...   +..+.....    
T Consensus        18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~---~~~~~~~~~----   90 (382)
T PRK11128         18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTL---LFAVAFWFG----   90 (382)
T ss_pred             HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHH---HHHHHHHHh----
Confidence            33444444455677778877666555444   456778899999999999842    2222211   111122121    


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHH
Q 045196          122 NNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLV  199 (255)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~  199 (255)
                           .++.|..++..++.+.+.+...+...++..+.  .+.|+.+.+.....+.+|.+++|.+.++  ...+++..|++
T Consensus        91 -----~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~  163 (382)
T PRK11128         91 -----AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI  163 (382)
T ss_pred             -----cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence                 14566666666666666666667777777665  3457888888888889999999999984  34577777776


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 045196          200 FGALSIFSGVLSLWLPET  217 (255)
Q Consensus       200 ~~~~~~~~~~~~~~~~e~  217 (255)
                      .++..++..+..++.||.
T Consensus       164 ~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        164 LTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             HHHHHHHHHHHHHccCCC
Confidence            665444443333344554

>PRK10054 putative transporter; Provisional

Probab=99.14  E-value=1.9e-09  Score=88.28  Aligned_cols=100  Identities=15%  Similarity=0.028  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 045196           79 MEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVEL  158 (255)
Q Consensus        79 ~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  158 (255)
                      ...+..+..+++.||.++|+.+..+..+.++....+.+..         ++.+...+...+.+++.....+.....+.+.
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~  326 (395)
T PRK10054        256 MVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG---------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHI  326 (395)
T ss_pred             heeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc---------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            3344567888999999999998888776666655554431         2344444455555555555567777889999


Q ss_pred             cchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          159 FPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       159 ~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      .|++.|++..+..+ ...+|..++|.+.+.
T Consensus       327 ~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        327 APPGMKASYFSAQS-LGWLGAAINPLVSGV  355 (395)
T ss_pred             CCcccceehHhHHH-HHHHHHHHHHHHHHH
Confidence            99999999888654 667899999999984

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.14  E-value=3.3e-09  Score=86.50  Aligned_cols=142  Identities=10%  Similarity=-0.010  Sum_probs=89.8

Q ss_pred             HHHHhhheeeeecccCchhHHHHHHHH---HHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHhcccCCCCCC
Q 045196           51 VGFVYYGIQLNVGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAG-SASILCTLFSNNNNNKGK  126 (255)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~  126 (255)
                      ..+....++.+.++.|.+......+.+   +...++.++.+.++||+||+........... +..+......        
T Consensus        20 ~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~--------   91 (382)
T TIGR00902        20 YGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGA--------   91 (382)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence            344444455677788887766655543   4666788999999999998654322221111 1111111111        


Q ss_pred             CCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHH
Q 045196          127 GGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGAL  203 (255)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~  203 (255)
                       ++.+..++...+.+.+.+...+...++..+.  .++|++..|.....+.+|.+++|.+.+.  ...+++..|.+.+..
T Consensus        92 -~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902        92 -HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             -hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence             4566665555555555555667777776553  5678999999999999999999998873  344676666665544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.13  E-value=1.2e-08  Score=83.54  Aligned_cols=167  Identities=10%  Similarity=0.030  Sum_probs=94.4

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHH-HHhhheeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVG-FVYYGIQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      +.++.+++|..+...+..+....... ...+..+.+.+..|.+....   ....+++.+++.++.+++.||.+|+ .++.
T Consensus       208 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~  286 (394)
T PRK10213        208 NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAG  286 (394)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHH
Confidence            45677888775544333222222221 12222344455566654332   3334567788999999999996544 4343


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                      +..+..+..+.+....         .+.+......++.+++.+...+...+++.+..|+ .++...++......+|..++
T Consensus       287 ~~~~~~~~~~~l~~~~---------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G  356 (394)
T PRK10213        287 APLVLAVSALVLTLWG---------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCG  356 (394)
T ss_pred             HHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHH
Confidence            4333333323322221         3445555555566666666666677778888874 45666777777778899999


Q ss_pred             hhHHHhh--hcCCCchhHHHHHHH
Q 045196          183 PLLVVVG--RMSPSLSFLVFGALS  204 (255)
Q Consensus       183 p~~~~~~--~~~~~~~~~~~~~~~  204 (255)
                      |.+.+..  ..+....+...+++.
T Consensus       357 ~~l~G~l~~~~g~~~~~~~~~~~~  380 (394)
T PRK10213        357 AAIGGYALDNIGLTSPLMLSGTLM  380 (394)
T ss_pred             HHHHHHHHhccChhhHHHHHHHHH
Confidence            9999843  234444444444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.13  E-value=3.2e-09  Score=89.48  Aligned_cols=152  Identities=13%  Similarity=0.010  Sum_probs=100.5

Q ss_pred             HHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 045196           29 ESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSA  104 (255)
Q Consensus        29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~  104 (255)
                      .+++|++.++...+..+...+......+..+.+++ ..|.+.......   .+++..++.++.|++.||+|||+.+..+.
T Consensus       253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~  332 (495)
T PRK14995        253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGM  332 (495)
T ss_pred             HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            35777776444333333333322222222333333 346665444333   44677788999999999999999888887


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhh
Q 045196          105 YVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL  184 (255)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~  184 (255)
                      .+.++..+++....       ...+.+......++.+++.+...+.....+.+..|++.++.+.++.++...+|+.+++.
T Consensus       333 ~~~~~~~~~l~~~~-------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~a  405 (495)
T PRK14995        333 ALSALSFYGLAMTD-------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIA  405 (495)
T ss_pred             HHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHH
Confidence            77766655554431       11234444555666677677777777888888999999999999999999999999988


Q ss_pred             HHH
Q 045196          185 LVV  187 (255)
Q Consensus       185 ~~~  187 (255)
                      +.+
T Consensus       406 i~g  408 (495)
T PRK14995        406 IFG  408 (495)
T ss_pred             HHH
Confidence            776

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1.3e-09  Score=82.25  Aligned_cols=137  Identities=9%  Similarity=0.013  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHhhhe--eeeecccCchhHHHHHHHHH---HHHHHHHHHHHHHhhcchhHHHHHHHHHH-HHHHHH
Q 045196           40 RLIMVMTAGFGVGFVYYGI--QLNVGNLNFNLYFSVALNAL---MEIPAVVIGTVLLSFTNRRLLLSRSAYVA-GSASIL  113 (255)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr~grr~~l~~~~~~~-~~~~~~  113 (255)
                      .+.+.++.+...-+.+++.  .++.+.+|.++..++.+.+.   ...+.+++.|.++||+||+...+.+..+. .+....
T Consensus       268 ~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~  347 (459)
T KOG4686|consen  268 VLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSG  347 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhh
Confidence            3444444444444444443  35566778776655444443   44557789999999999998776654433 334444


Q ss_pred             HHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          114 CTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      +.+..         -+++..   ..+.+...+......|..++-+.|.++-|++.|+++...++|-.+.|++.+.
T Consensus       348 l~Ft~---------lsPy~~---m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~  410 (459)
T KOG4686|consen  348 LFFTF---------LSPYTS---MTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF  410 (459)
T ss_pred             HHhhh---------ccHHHH---HHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence            44432         233322   2222333333334578888889999999999999999999999999999985

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.11  E-value=1.1e-08  Score=83.51  Aligned_cols=139  Identities=12%  Similarity=-0.032  Sum_probs=81.9

Q ss_pred             ecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH
Q 045196           62 VGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG  138 (255)
Q Consensus        62 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (255)
                      ....|.+.....   ...+++.+++.++.+++.||+|+|+.+.++..+.++..+++....         ++.+...+..+
T Consensus       227 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~  297 (382)
T PRK10091        227 MFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG---------GMKTASLIFAF  297 (382)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHH
Confidence            334565544433   345567888999999999999999998888777766665544331         23333333333


Q ss_pred             HHHHHHhhhhh-hhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hh--cCCCchhHHHHHHHHHHHHHH
Q 045196          139 VGFMAASTAFD-VMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GR--MSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       139 ~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      +.+.+..+..+ .......+..|.+.++.+  ..+....+|..++|.+.+. .+  .++...+...++++++.....
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            33333222223 233344455555555544  3466678999999999984 22  345556666655555544443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.09  E-value=1e-10  Score=93.53  Aligned_cols=104  Identities=10%  Similarity=-0.086  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhh
Q 045196           70 YFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFD  149 (255)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (255)
                      ........++.++|.+++|++.||+|||+++...++++.++.++.....   ....+..-.+.+...+++.+++.++-+|
T Consensus        87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~---~~~~~~~~m~~L~~~R~~LGiGIGGDYP  163 (538)
T KOG0252|consen   87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV---GTTSPLGVMMTLCFFRFLLGIGIGGDYP  163 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC---CCCCCcchhhHHHHHHHHhhccccCCCc
Confidence            3344556678999999999999999999999999988888887544431   1111112334667778888999999999


Q ss_pred             hhhhhhccccchhcHHHHHHHHHHHHH
Q 045196          150 VMYIYCVELFPTNVRNIAVSFLRQALM  176 (255)
Q Consensus       150 ~~~~~~~e~~p~~~r~~~~~~~~~~~~  176 (255)
                      +..++++|....+.||.-.+.......
T Consensus       164 lSAtI~SE~an~~~RGa~iaavFa~Qg  190 (538)
T KOG0252|consen  164 LSATIMSESANKKTRGAFIAAVFAMQG  190 (538)
T ss_pred             chHHHhhhhhhhccccceeEEEEEecc
Confidence            999999999999999987776644443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.08  E-value=1.6e-08  Score=82.73  Aligned_cols=91  Identities=16%  Similarity=0.072  Sum_probs=53.9

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhhee-eeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQ-LNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      ..++.++++.++...+...+............+ +....+|.+....   ....+++.+++.++.+++.||+|||+.+.+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~  274 (392)
T PRK10473        195 ENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLT  274 (392)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            455677777655544433333222211111112 2223445554333   233456778899999999999999999988


Q ss_pred             HHHHHHHHHHHHHHh
Q 045196          103 SAYVAGSASILCTLF  117 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~  117 (255)
                      +..+..+..+.+...
T Consensus       275 ~~~~~~~~~~~~~~~  289 (392)
T PRK10473        275 SQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887777666665554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.01  E-value=2.7e-09  Score=89.25  Aligned_cols=129  Identities=18%  Similarity=0.171  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCch-HHHHHHHHHHHHHhhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSW-PQLIIEGVGFMAASTAFDVMYI  153 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  153 (255)
                      +......+..++.+.+.||+|.|.+.+.+.+++.+.+++..+.          ++.| +.+...++.+++.+..+....+
T Consensus        89 l~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~----------~~i~~l~lt~gvi~G~G~~~~~~paiv  158 (509)
T KOG2504|consen   89 LLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA----------TSLWQLYLTFGVIGGLGLGLIYLPAVV  158 (509)
T ss_pred             HHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHhhccchhhhcchhh
Confidence            3334556678999999999999999999999999999998888          4565 4555666777777777777777


Q ss_pred             hhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH--hhhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          154 YCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV--VGRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       154 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      ++...|+ +.|+.+.|+......+|.++-|.+..  +...+|+..+++.+.+.+-+.+....+
T Consensus       159 iv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~  220 (509)
T KOG2504|consen  159 ILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALL  220 (509)
T ss_pred             hhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            7776665 56999999999999999988887776  366789999999888887666655555

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.99  E-value=6.4e-09  Score=86.06  Aligned_cols=182  Identities=12%  Similarity=0.073  Sum_probs=109.5

Q ss_pred             CccchHHhhcChhHHHHHHHHHHHHHH-HHHHhhheeeeecccCchhHHHHHHHH---HHHHHHHHHHHHHHhhcch---
Q 045196           24 SDNKNESLWGTKWAAKRLIMVMTAGFG-VGFVYYGIQLNVGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSFTNR---   96 (255)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr---   96 (255)
                      .+.+|+++++++..|-..+..+.-... ..+..|...++-+.++.+....+.+.+   +...+..+++|.++||+-+   
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l  326 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL  326 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            467899999998744333322222222 233344433333446777665555544   5777888999999998744   


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHH
Q 045196           97 ------RLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSF  170 (255)
Q Consensus        97 ------r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  170 (255)
                            |..-.++....+++++.+.+..        ....+..+++..+.....+...+-.+.-..+.. ++.-+..+|+
T Consensus       327 s~t~~rkifn~i~~~~~ai~l~~l~~~~--------~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~  397 (466)
T KOG2532|consen  327 SETTVRKIFNTIAFGGPAVFLLVLAFTS--------DEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGI  397 (466)
T ss_pred             chHhHHHHHHhHHHHHHHHHHHeeeecC--------CCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHH
Confidence                  3333455555555555555552        223334444444433333433333344444434 4567899999


Q ss_pred             HHHHHHHhhhhhhhHHHhhh-----cCCCchhHHHHHHHHHHHHHHHHh
Q 045196          171 LRQALMLGASVSPLLVVVGR-----MSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       171 ~~~~~~~g~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      .++.+.+.++++|.+.+...     ..|...|++.+++.+++.++..+.
T Consensus       398 ~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  398 INFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            99999999999999998421     246677888888888777554433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.99  E-value=5.3e-09  Score=84.61  Aligned_cols=145  Identities=9%  Similarity=-0.029  Sum_probs=84.8

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeee-cccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNV-GNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      ..++++++++.+...+.....+..........+.+. ..++.+.....   .+..+..+++.+++|+++||+|||+.+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  296 (366)
T TIGR00886       217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLM  296 (366)
T ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHH
Confidence            456677776644433333322222211111122233 34455543333   33445677888999999999999887777


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCC-CchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGG-GSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGA  179 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  179 (255)
                      +......+..++.+..       ... +.+..+....+..+..+...+..+.+++|.+| +.+|++.|+.+..+++|+
T Consensus       297 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       297 SFLGVAMGAFLVVLGL-------VSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence            6665555444444331       001 33333344444444555566778888999988 579999999998887764

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.97  E-value=4.7e-09  Score=87.19  Aligned_cols=155  Identities=10%  Similarity=-0.075  Sum_probs=87.4

Q ss_pred             CccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHH---HHHHHHHHHHHHHHHHHHHHhh----cc
Q 045196           24 SDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYF---SVALNALMEIPAVVIGTVLLSF----TN   95 (255)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr----~g   95 (255)
                      +...+++.+++|..|...++.++.....+...+..+.++.+ .+.+...   ..+...++.+++.+++|+++||    ..
T Consensus       262 ~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~  341 (495)
T KOG2533|consen  262 KWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFA  341 (495)
T ss_pred             CHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHH
Confidence            44567788888875555444444444444333333444444 3344333   2344567889999999999999    56


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHH-HHHHHHH
Q 045196           96 RRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIA-VSFLRQA  174 (255)
Q Consensus        96 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~-~~~~~~~  174 (255)
                      +|..+.....+..+...+.....         ..........+.+..+.....+....+.++....+.|... .+.....
T Consensus       342 ~~~~~~~~~~~~~~~g~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~  412 (495)
T KOG2533|consen  342 RRLLFIVFLCLYAIIGAISLLAA---------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDG  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcc
Confidence            66666665555554443332221         2233333333444444555567788888888866555543 3444444


Q ss_pred             HHHhhhhhhhHHH
Q 045196          175 LMLGASVSPLLVV  187 (255)
Q Consensus       175 ~~~g~~~~p~~~~  187 (255)
                      .+.+++++|.+..
T Consensus       413 ~~s~~~~~~~~~~  425 (495)
T KOG2533|consen  413 TGSAGAISGQLFR  425 (495)
T ss_pred             hhHHHHhhhhhcc
Confidence            4555555555443

>TIGR00889 2A0110 nucleoside transporter

Probab=98.97  E-value=2.1e-08  Score=82.68  Aligned_cols=140  Identities=9%  Similarity=0.034  Sum_probs=78.1

Q ss_pred             cccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH
Q 045196           63 GNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNR-RLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG  138 (255)
Q Consensus        63 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (255)
                      ++.|.+......+   ..++.+++.++.|+++||+|| |+++.++.++..+...+..+.          ++.+...+..+
T Consensus        31 ~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  100 (418)
T TIGR00889        31 KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV----------TTPAGMFPVLL  100 (418)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh----------cCHHHHHHHHH
Confidence            4467665555444   446788899999999999965 777777776665655555544          34554444444


Q ss_pred             HHHHHHhhhhhhhh----hhhc----cccchhcHHHHHHHHHHHHHHhhhhhhhHHHhhhcC-CCchhHHHHHHHHHHHH
Q 045196          139 VGFMAASTAFDVMY----IYCV----ELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGRMS-PSLSFLVFGALSIFSGV  209 (255)
Q Consensus       139 ~~~~~~~~~~~~~~----~~~~----e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~  209 (255)
                      +.++......+...    .+..    |......|.+..|      .+|.+++|.+.+..... .+.+|++.++..++..+
T Consensus       101 l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~f~~~~~~~~~~~~  174 (418)
T TIGR00889       101 ANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQLYITAGSSALLGV  174 (418)
T ss_pred             HHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence            44443333333322    2222    2222222333333      35667777777643222 23356666666666555


Q ss_pred             HHHHhccCC
Q 045196          210 LSLWLPETK  218 (255)
Q Consensus       210 ~~~~~~e~~  218 (255)
                      +.+++||+.
T Consensus       175 ~~~~~~e~~  183 (418)
T TIGR00889       175 FALTLPDIP  183 (418)
T ss_pred             HHhcCCCCC
Confidence            556677763

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.96  E-value=2.7e-08  Score=92.12  Aligned_cols=162  Identities=9%  Similarity=-0.084  Sum_probs=101.1

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      .++.+.+++.++...+..++.++.........+.++. .++.+....   ....+++.++|.++.|+++|+.++++.+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~  296 (1140)
T PRK06814        217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI  296 (1140)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence            4667778877665555444444443322222233333 345554333   334556888899999999998877766655


Q ss_pred             HHHHHHHHHHHHHHhccc--CCCC--------CCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHH
Q 045196          103 SAYVAGSASILCTLFSNN--NNNK--------GKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLR  172 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  172 (255)
                      +.++.+++.+.+.+....  ....        ....+.|..++..++.+++.+...+...+++.+..|++.||+++|+.+
T Consensus       297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~  376 (1140)
T PRK06814        297 GALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANN  376 (1140)
T ss_pred             HHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHH
Confidence            555554444433331000  0000        001344555555566666667777788999999999999999999999


Q ss_pred             HHHHHhhhhhhhHHHh
Q 045196          173 QALMLGASVSPLLVVV  188 (255)
Q Consensus       173 ~~~~~g~~~~p~~~~~  188 (255)
                      +...++..+++.+.+.
T Consensus       377 ~~~~~~~~ig~~~~g~  392 (1140)
T PRK06814        377 VLNAAFMVAGTIILAL  392 (1140)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988774

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.96  E-value=1.1e-07  Score=78.87  Aligned_cols=145  Identities=13%  Similarity=0.066  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHhcccCCCC-C---------CCCC-chHHHHHHHHHH
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNR-RLLLSRSAYVAGSASILCTLFSNNNNNK-G---------KGGG-SWPQLIIEGVGF  141 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~-~~~~~~~~~~~~  141 (255)
                      .+.++...+.+++..++.+|+|+ |....++.++.++++....+.....++. .         +... .+..++...+.+
T Consensus       312 ~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G  391 (477)
T TIGR01301       312 MLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILG  391 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhh
Confidence            33445555667788889999985 6666777777776666665443111000 0         0001 245555666667


Q ss_pred             HHHhhhhhhhhhhhccccchh--cHHHHHHHHHHHHHHhhhhhhhHHHh----hhcCCCchhHHHHHHHHHHHHHH-HHh
Q 045196          142 MAASTAFDVMYIYCVELFPTN--VRNIAVSFLRQALMLGASVSPLLVVV----GRMSPSLSFLVFGALSIFSGVLS-LWL  214 (255)
Q Consensus       142 ~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~  214 (255)
                      +.....+++.++++++..|.+  ..|..+|+.|.+..+..++..+..+.    ...+....+.+.++..+++++.. +.+
T Consensus       392 i~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~  471 (477)
T TIGR01301       392 IPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL  471 (477)
T ss_pred             HHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence            777778899999999999954  44889999999988887766655542    22233445666677777777765 456


Q ss_pred             ccCC
Q 045196          215 PETK  218 (255)
Q Consensus       215 ~e~~  218 (255)
                      |+++
T Consensus       472 ~~~~  475 (477)
T TIGR01301       472 PRPR  475 (477)
T ss_pred             CCCC
Confidence            7654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.93  E-value=2.6e-08  Score=82.61  Aligned_cols=156  Identities=13%  Similarity=0.023  Sum_probs=91.4

Q ss_pred             eeeecccCchhHHHHHHHH---HHHHHHHHHHHHHHhh----cchhH-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCc
Q 045196           59 QLNVGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSF----TNRRL-LLSRSAYVAGSASILCTLFSNNNNNKGKGGGS  130 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr----~grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (255)
                      .++...+|.+......+..   +...+..++.|+++||    +|||+ .++++....+++.+++...+...    .....
T Consensus        24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~----~~~~~   99 (437)
T TIGR00792        24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFS----ATGKL   99 (437)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCC----cchHH
Confidence            3445567777766655554   5667788999999998    67744 56677777776666665542000    00011


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcccc-chhcHHHHHHHHHHHHHHhhhhhhhHHH-----hh----hcCCCchhHHH
Q 045196          131 WPQLIIEGVGFMAASTAFDVMYIYCVELF-PTNVRNIAVSFLRQALMLGASVSPLLVV-----VG----RMSPSLSFLVF  200 (255)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~p~~~~-----~~----~~~~~~~~~~~  200 (255)
                      +..++..++...+.+.......++.+|+. ++++|++..++.+....+|+.+++.+.+     ..    ..++...+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            22222333334444444456678888887 5688999999888887777765544432     11    12344455666


Q ss_pred             HHHHHHHHHHH-HHhccCC
Q 045196          201 GALSIFSGVLS-LWLPETK  218 (255)
Q Consensus       201 ~~~~~~~~~~~-~~~~e~~  218 (255)
                      +++.++..++. +..||++
T Consensus       180 ~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHcCCEecC
Confidence            66655554443 3456643

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.93  E-value=3.3e-08  Score=80.98  Aligned_cols=175  Identities=15%  Similarity=0.132  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHh--hhee--eeecc--cCchh---HHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHH
Q 045196           38 AKRLIMVMTAGFGVGFVY--YGIQ--LNVGN--LNFNL---YFSVALNALMEIPAVVIGTVLLSFTNR-RLLLSRSAYVA  107 (255)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~l~~~~~~~  107 (255)
                      |+.+++..+..+.+.+.+  +.+.  .|+..  .+.+.   .+.....+++..++++++|+...|.+. |+.++.+.+++
T Consensus        33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~  112 (488)
T KOG2325|consen   33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA  112 (488)
T ss_pred             hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence            455555555555544332  2222  23333  23322   223334567888899999999999885 66678888888


Q ss_pred             HHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHH-
Q 045196          108 GSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLV-  186 (255)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~-  186 (255)
                      .+++++.......     +....+++++..++.+++.+. ....-.|+++..-.+.|.++++.......+|.++||.+. 
T Consensus       113 ~~g~llY~~l~~~-----~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~  186 (488)
T KOG2325|consen  113 IIGNLLYLALAYV-----PNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQL  186 (488)
T ss_pred             HHHHHHHHHHHhc-----ccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence            8888777433211     122556777777777765544 478889999987777888888888776666666666544 


Q ss_pred             ---HhhhcC-----------CCchhHHHHHHHHHHHHHH-HHhccCC
Q 045196          187 ---VVGRMS-----------PSLSFLVFGALSIFSGVLS-LWLPETK  218 (255)
Q Consensus       187 ---~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~e~~  218 (255)
                         ++...+           +..+-++.+++.++.+++. ++++|..
T Consensus       187 ~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  187 AFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             HHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence               322211           2234566667777666655 4556643

>TIGR00788 fbt folate/biopterin transporter

Probab=98.93  E-value=2.7e-08  Score=83.19  Aligned_cols=124  Identities=20%  Similarity=0.088  Sum_probs=84.3

Q ss_pred             ccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           64 NLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        64 ~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      ..|.++...+   ...+++.+++..+.+++.+|++.|+++.++.++.++..+..........-.....+.+......++.
T Consensus       282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~  361 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA  361 (468)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence            4555544433   3455777888899999999999999999988887776644322110000000001222333344455


Q ss_pred             HHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          141 FMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      .++.+........++.+..|++.+++.+++.....++|..+++.+.+
T Consensus       362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg  408 (468)
T TIGR00788       362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV  408 (468)
T ss_pred             HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666777899999999999999999999999999999998776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.92  E-value=2.6e-08  Score=75.31  Aligned_cols=129  Identities=15%  Similarity=0.087  Sum_probs=86.1

Q ss_pred             Hhhheeeeec----ccCchhHHHHHHH---HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 045196           54 VYYGIQLNVG----NLNFNLYFSVALN---ALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGK  126 (255)
Q Consensus        54 ~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (255)
                      ..|.+..|.+    .++.+......+.   .++..+ .++.|.+.|++|.+.++.++.....+....+......   ..+
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~---~i~   92 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG---RIP   92 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC---ccC
Confidence            4444444444    4566655444443   344444 4888999999999999999999888888777665311   111


Q ss_pred             CCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          127 GGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ..+.|.+.+..++.+.+.+...........+.||. .||++.|+.-....+++.+-..+..
T Consensus        93 ~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~  152 (250)
T PF06813_consen   93 SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYS  152 (250)
T ss_pred             ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHH
Confidence            23455655555555554444555666667788985 6999999999999988877666655

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.90  E-value=3e-09  Score=86.77  Aligned_cols=172  Identities=16%  Similarity=0.200  Sum_probs=121.5

Q ss_pred             hhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 045196           31 LWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVA  107 (255)
Q Consensus        31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~  107 (255)
                      ++.++.....++..+++-+...++++.+-..+++.+....+.   ..+.-.+.++.-++.+++.+|+|+-+++.+++.+.
T Consensus       367 ~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~  446 (618)
T KOG3762|consen  367 VFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACN  446 (618)
T ss_pred             HhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHH
Confidence            455554333233333333334444444434455555433222   23334577888899999999999999999998888


Q ss_pred             HHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHH-HHhhhhhhhHH
Q 045196          108 GSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQAL-MLGASVSPLLV  186 (255)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~~~p~~~  186 (255)
                      .+-.+.+.+.          .+.|..+.+-++.+...+..|...-+|++...|++.|.++.++..... .+|-.+|.++.
T Consensus       447 ~~Rf~~~S~L----------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIG  516 (618)
T KOG3762|consen  447 VGRFLYYSYL----------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIG  516 (618)
T ss_pred             HHHHHHHHHh----------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhh
Confidence            8888777777          689999889999999999999999999999999999999999987665 46666777777


Q ss_pred             Hh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196          187 VV--GRMSPSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       187 ~~--~~~~~~~~~~~~~~~~~~~~~~~~  212 (255)
                      +.  ...+....|.++++.+++.+++..
T Consensus       517 G~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  517 GFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            63  344556677777777776655443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.89  E-value=3e-08  Score=77.68  Aligned_cols=132  Identities=11%  Similarity=0.102  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhc
Q 045196           77 ALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCV  156 (255)
Q Consensus        77 ~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (255)
                      ..+..+++..+|.++|++|||+.+.++....++..++-...          .++..+.++..+.+++.++ .|...++-.
T Consensus       123 ~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s----------pnf~~L~~f~~l~~~g~gg-~pv~~~~yl  191 (528)
T KOG0253|consen  123 FLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS----------PNFASLCVFRALWGFGVGG-LPVDSAIYL  191 (528)
T ss_pred             HhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC----------CCeehhhHHHHHHhccCCC-ccHhHHHHH
Confidence            35778899999999999999999998888877776665554          4556667777788877777 688899999


Q ss_pred             cccchhcHHHHHHHHHHHHHHhhhhhhhHHH--hhhcCCCchhHHHHHHHHHHHHHHHHhccCCCC
Q 045196          157 ELFPTNVRNIAVSFLRQALMLGASVSPLLVV--VGRMSPSLSFLVFGALSIFSGVLSLWLPETKNA  220 (255)
Q Consensus       157 e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (255)
                      |..|...|..-+-.. ++..+|.+....+.-  ....+|++.++.......+.+.+.+++||+.+.
T Consensus       192 e~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf  256 (528)
T KOG0253|consen  192 EFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRF  256 (528)
T ss_pred             HhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcch
Confidence            999999998766555 666677776666553  234456666666666666666777888987554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.88  E-value=1.4e-07  Score=74.75  Aligned_cols=148  Identities=17%  Similarity=0.087  Sum_probs=97.5

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHH--HHhhheeeeecccCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVG--FVYYGIQLNVGNLNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      ...+++++|+++. -.+..+++.+..  ...+...+..+..|.+.....   ...-.+.++|.+++.++..|+...+.+.
T Consensus       228 ~~~~l~~~~~~~~-gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~La  306 (422)
T COG0738         228 GLSSLFQNKHLRL-GVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLA  306 (422)
T ss_pred             hHHHHHhChHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            5788999998554 444444444432  222222232333554443332   2233577889999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      +..++..+.++...+.          ++. ..+...++.+++.+..+|..++...+..|.+  ....|..-....+|+++
T Consensus       307 f~a~~~ill~~~~~l~----------~g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGGAi  373 (422)
T COG0738         307 FYALIAILLLLAVALI----------GGV-VALYALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAI  373 (422)
T ss_pred             HHHHHHHHHHHHHHHh----------cCh-HHHHHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecchH
Confidence            8887777777777766          343 3444555666778889999999999999933  33334444455688899


Q ss_pred             hhhHHHh
Q 045196          182 SPLLVVV  188 (255)
Q Consensus       182 ~p~~~~~  188 (255)
                      .|.+.|+
T Consensus       374 iP~l~G~  380 (422)
T COG0738         374 IPPLQGV  380 (422)
T ss_pred             HHHHHHH
Confidence            9999885

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.83  E-value=2.4e-07  Score=73.52  Aligned_cols=108  Identities=10%  Similarity=-0.113  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           73 VALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      ++..-.+..++++..+++.+|+|+|+-++.+..++++.+.+..-..       ...++...++..++.+.+.+.......
T Consensus        54 qfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa-------~~~~y~~FL~~lFila~Gi~~LetaaN  126 (422)
T COG0738          54 QFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA-------SSKSYGFFLVALFILASGIGLLETAAN  126 (422)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh-------hhhhHHHHHHHHHHHHhhhHHHHhccc
Confidence            3334457788899999999999999999999999999888775332       113445666666777777777788888


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      .++..+.|++..+.-+.+.+.++.+|++++|.+.+
T Consensus       127 p~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738         127 PYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             hHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            99999999988888899999999999999999887

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.81  E-value=3.4e-07  Score=74.86  Aligned_cols=168  Identities=14%  Similarity=0.013  Sum_probs=96.4

Q ss_pred             HHHHHHHHHH----HHhhheeeeecccCchhHHHHHHH-----HHHHHHHHHHH-HHHHhhcchhHHHHHHHHHHHH-HH
Q 045196           43 MVMTAGFGVG----FVYYGIQLNVGNLNFNLYFSVALN-----ALMEIPAVVIG-TVLLSFTNRRLLLSRSAYVAGS-AS  111 (255)
Q Consensus        43 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-g~l~dr~grr~~l~~~~~~~~~-~~  111 (255)
                      ..+..++.+.    +.....+.|+++.|.+......+.     .+..++..++. ++..||+|||+..++...+... +.
T Consensus         5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~   84 (390)
T TIGR02718         5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACL   84 (390)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHH
Confidence            3344455553    333445677888888876665542     22334444444 4467778988886555533222 22


Q ss_pred             HHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--h
Q 045196          112 ILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--G  189 (255)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~  189 (255)
                      ..+.....      ............+...++.....+....+..|..+.+.++...+.......+|.++++...++  .
T Consensus        85 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~  158 (390)
T TIGR02718        85 ASLALVGP------DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG  158 (390)
T ss_pred             HHHHcCCc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222210      001122222333333344445556677778888888877877777777667888888766552  4


Q ss_pred             hcCCCchhHHHHHHHHHHHHHHHHhcc
Q 045196          190 RMSPSLSFLVFGALSIFSGVLSLWLPE  216 (255)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~e  216 (255)
                      ..+++.+|++.+++.++..+..++++|
T Consensus       159 ~~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       159 KFGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            457778888888877766655555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.79  E-value=6.7e-08  Score=79.83  Aligned_cols=134  Identities=20%  Similarity=0.262  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q 045196           76 NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYC  155 (255)
Q Consensus        76 ~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (255)
                      .++..++.+...|.++||+|||..+.+....+.+..+.+.+.           .+|..+ ..-+ ..+.....+...+++
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-----------~~~~~~-~~~l-~g~~~~~~s~~~a~v  137 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-----------GYWFFL-LLGL-SGGFSAIFSVGFAYV  137 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-----------HHHHhh-hccc-ccchhhhhhhhhhhe
Confidence            456677888999999999999999999888887776666654           233332 1111 222345567889999


Q ss_pred             ccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHH-HHhccCCCCCc
Q 045196          156 VELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLS-LWLPETKNAPL  222 (255)
Q Consensus       156 ~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~  222 (255)
                      +|+...+.|....|+.+.....+..++|.+.+.  ...+....+.+..+..++..+.. +++||+...+.
T Consensus       138 adis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~  207 (463)
T KOG2816|consen  138 ADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE  207 (463)
T ss_pred             eeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence            999999999999999999888899999998873  34556667777777777776655 46788765543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.75  E-value=2.6e-07  Score=77.63  Aligned_cols=114  Identities=7%  Similarity=0.005  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhH-------HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRL-------LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAAST  146 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (255)
                      .+..+..++..++.+++.||++||+       -+.++.++.+++.+.+........+.+...+.|..+...++.+.+...
T Consensus       316 ~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~  395 (489)
T PRK10207        316 ALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELF  395 (489)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            3444556677788899999999886       366677766665544321110001111123455566666677777777


Q ss_pred             hhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          147 AFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       147 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ..+....++.+..|++.++.++|+.+....+|+.++..+..
T Consensus       396 ~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~  436 (489)
T PRK10207        396 ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT  436 (489)
T ss_pred             HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999888888888877664

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.74  E-value=5.1e-07  Score=73.77  Aligned_cols=159  Identities=18%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             HHHHHHHhhheeeeecccCchhHHHHHHHH---HHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHhcccCCC
Q 045196           48 GFGVGFVYYGIQLNVGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSFTN-RRLLLSRSAYVAGSASILCTLFSNNNNN  123 (255)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~g-rr~~l~~~~~~~~~~~~~~~~~~~~~~~  123 (255)
                      ++......-.++.|+++.|.+....+.+.+   +..+++.++.|+++||.+ +|+++.+..++.++..+.....      
T Consensus        15 f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~------   88 (400)
T PF03825_consen   15 FFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS------   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh------
Confidence            333333333346788888888777666554   567788999999999986 5667766666666655444443      


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhh-----HHHhhh-cCCCchh
Q 045196          124 KGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL-----LVVVGR-MSPSLSF  197 (255)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~-----~~~~~~-~~~~~~~  197 (255)
                          .+.+.++...++..++.....|+.-++..+....  ++.-.|-...++.+|-+++..     +.+... ......+
T Consensus        89 ----~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~  162 (400)
T PF03825_consen   89 ----SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIF  162 (400)
T ss_pred             ----ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHH
Confidence                4556555555555555555556666666665542  233344444445444444322     222221 1222345


Q ss_pred             HHHHHHHHHHHHHHHHhccCC
Q 045196          198 LVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      ++.++..++.....+.+|+++
T Consensus       163 ~i~~~~~~ll~~~~l~lp~~~  183 (400)
T PF03825_consen  163 YIAAILSLLLAGFALFLPKTP  183 (400)
T ss_pred             HHHHHHHHHHHHHHHhCCCCc
Confidence            555555544444456677664

>TIGR00788 fbt folate/biopterin transporter

Probab=98.73  E-value=3.4e-07  Score=76.59  Aligned_cols=169  Identities=17%  Similarity=0.079  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHH---hhheeeeec-ccCchhHHHHHHHHHHHHH--HHHHHHHHHhhcc-----hhHHHHHHHHHHHH
Q 045196           41 LIMVMTAGFGVGFV---YYGIQLNVG-NLNFNLYFSVALNALMEIP--AVVIGTVLLSFTN-----RRLLLSRSAYVAGS  109 (255)
Q Consensus        41 ~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~g~l~dr~g-----rr~~l~~~~~~~~~  109 (255)
                      ..+....++.+++.   ......++. .+|.+....+...++..++  ..+++|.++||++     ||+.++++.++.. 
T Consensus        28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~-  106 (468)
T TIGR00788        28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGS-  106 (468)
T ss_pred             HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHH-
Confidence            34444455655544   222223344 4688877765555554443  4577999999997     6777777766553 


Q ss_pred             HHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHH---HHHHHHHHHHhhhhhhhHH
Q 045196          110 ASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIA---VSFLRQALMLGASVSPLLV  186 (255)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~---~~~~~~~~~~g~~~~p~~~  186 (255)
                      +........       ..+......++.++..++.+......-++..|..+ +.+..+   .++.+....+|.++++.+.
T Consensus       107 ~~~~~~l~~-------~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~  178 (468)
T TIGR00788       107 AILYGLLPG-------KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLG  178 (468)
T ss_pred             HHHHHhccc-------ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHH
Confidence            111111111       11222233335566666666677888999999998 444432   3344444457888888888


Q ss_pred             Hh--hhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          187 VV--GRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       187 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      +.  ...++...|++.+++.++..+..++++|.+
T Consensus       179 G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       179 GPLLDKTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence            74  334677788888777777755556778864

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.68  E-value=4.9e-06  Score=68.65  Aligned_cols=173  Identities=6%  Similarity=-0.127  Sum_probs=81.2

Q ss_pred             cchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHH
Q 045196           26 NKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLS  101 (255)
Q Consensus        26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~  101 (255)
                      .++++++++|.++...+...+............+.+.. ..+.+.......   ...+.++++.+.+.+.+|.++++...
T Consensus       209 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  288 (413)
T PRK15403        209 RDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIW  288 (413)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHH
Confidence            35677888887665444433333332222222343433 345655443332   23455566666666654444333332


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh--hhhccccchhcHHHHHHHHHHHHHHhh
Q 045196          102 RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY--IYCVELFPTNVRNIAVSFLRQALMLGA  179 (255)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~p~~~r~~~~~~~~~~~~~g~  179 (255)
                      ....+..+..+++......     ..+..+..++..++.+++.+...+...  ++.+...   .+|++.++.+.....+.
T Consensus       289 ~~~~~~~ig~~l~~~~~~~-----~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~---~~G~a~a~~~~~~~~~~  360 (413)
T PRK15403        289 RAVPIQLVGLALLIVGNLL-----WPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNL---PKGTVSASLNMVILMVM  360 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----ccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCC---CCcHHHHHHHHHHHHHH
Confidence            2222222222221111000     002222233444444555555555555  3322222   36888888888877777


Q ss_pred             hhhhhHHHhh-hcCCCchhHHHHHHHHH
Q 045196          180 SVSPLLVVVG-RMSPSLSFLVFGALSIF  206 (255)
Q Consensus       180 ~~~p~~~~~~-~~~~~~~~~~~~~~~~~  206 (255)
                      ..++...++. ..+...++...++++.+
T Consensus       361 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~  388 (413)
T PRK15403        361 AVSVEIGRWLWFNGGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            7777776642 33455556555544443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.68  E-value=1.7e-06  Score=73.32  Aligned_cols=105  Identities=9%  Similarity=-0.028  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRL-LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      ...+++..+|.++.|.+..+++|-| .++++...+.+++-++....        .++....+.+.++.+++.++......
T Consensus       356 ~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~--------~~n~~~~i~~~~l~g~giG~~~~~~~  427 (599)
T PF06609_consen  356 SPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR--------PDNKNAAIAFLVLAGFGIGGILVPAI  427 (599)
T ss_pred             hhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc--------CCCcchHHHHHHHHHHhHHHHHHHHH
Confidence            4455667778888999998888744 44566655554444444431        12333445666777777777767777


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhhhhHH
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVSPLLV  186 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~  186 (255)
                      ...+-..|++.-+++.|+..+...+|+.++..+.
T Consensus       428 ~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  428 VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7777788999999999999888888776654433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.66  E-value=1.1e-05  Score=63.67  Aligned_cols=147  Identities=15%  Similarity=-0.034  Sum_probs=90.4

Q ss_pred             cccCchhHHHHHHH---HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHH
Q 045196           63 GNLNFNLYFSVALN---ALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGV  139 (255)
Q Consensus        63 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (255)
                      +++|.+......+.   .+...+...+.|.++||+|||+.-+..+++.+++++....           ++.+.+++..++
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-----------~~~~~L~~GRvl  130 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-----------SNYPVLLLGRVL  130 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-----------cccHHHHHHHHH
Confidence            45666543332222   2355667788899999999999988888888888764322           467788888888


Q ss_pred             HHHHHhhhhhhhhhhh-cc----ccchhcHHHHHHHHHHH-HHHhhhhhhhHHH----hhhcCCCchhHHHHHHHHHHHH
Q 045196          140 GFMAASTAFDVMYIYC-VE----LFPTNVRNIAVSFLRQA-LMLGASVSPLLVV----VGRMSPSLSFLVFGALSIFSGV  209 (255)
Q Consensus       140 ~~~~~~~~~~~~~~~~-~e----~~p~~~r~~~~~~~~~~-~~~g~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~  209 (255)
                      ++...+..++..-+|. .|    -+|.+..+..++...+. +.+-++.+..+..    ....+...||.....+..++.+
T Consensus       131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~  210 (354)
T PF05631_consen  131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV  210 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            8887777666554443 22    25655555555544422 2333333333333    2333456788887777777766


Q ss_pred             HHH-HhccCCCC
Q 045196          210 LSL-WLPETKNA  220 (255)
Q Consensus       210 ~~~-~~~e~~~~  220 (255)
                      ++. ..+|..+.
T Consensus       211 ~I~~~W~ENyg~  222 (354)
T PF05631_consen  211 LILKTWPENYGD  222 (354)
T ss_pred             HHHhcccccCCC
Confidence            654 34665443

>PRK09669 putative symporter YagG; Provisional

Probab=98.62  E-value=5.6e-07  Score=74.96  Aligned_cols=126  Identities=8%  Similarity=-0.035  Sum_probs=75.5

Q ss_pred             hheeeeecccCchhHHHHHHHHH---HHHHHHHHHHHHHhh----cchh-HHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 045196           56 YGIQLNVGNLNFNLYFSVALNAL---MEIPAVVIGTVLLSF----TNRR-LLLSRSAYVAGSASILCTLFSNNNNNKGKG  127 (255)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr----~grr-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (255)
                      |...++.+.+|.+......+..+   ...+..++.|+++||    +||| +.++++....+++..++...+..    +..
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~----~~~  106 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDF----GAT  106 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCC----Ccc
Confidence            33344556678887776666554   455677999999998    6774 55556666666666554443200    000


Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhhhhcccc-chhcHHHHHHHHHHHHHHhhhhhhhH
Q 045196          128 GGSWPQLIIEGVGFMAASTAFDVMYIYCVELF-PTNVRNIAVSFLRQALMLGASVSPLL  185 (255)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~p~~  185 (255)
                      ...+...+..++...+.........++.+|+. ++++|++..++......+|+.+++.+
T Consensus       107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~  165 (444)
T PRK09669        107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVI  165 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122222222333334445556678889987 55779988888887777777666543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.60  E-value=5.4e-06  Score=65.17  Aligned_cols=166  Identities=13%  Similarity=0.021  Sum_probs=107.0

Q ss_pred             hHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc----cCchhHHHHHH---HHHHHHHHHHHHHHHHhhc-chhHH
Q 045196           28 NESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN----LNFNLYFSVAL---NALMEIPAVVIGTVLLSFT-NRRLL   99 (255)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~-grr~~   99 (255)
                      -..++|+|.-|..    .+.+-.+++.+|...-|++.    .|.+...+..+   ..+..++.++....+.+|. .+|+.
T Consensus       201 ~~~vw~~~~aW~v----tLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~  276 (395)
T COG2807         201 VRKVWRSPLAWQV----TLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL  276 (395)
T ss_pred             ccccccCchhHHH----HHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence            3457888764443    33444566677766666654    46666665544   4457778889999999975 57777


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccch-hcHHHHHHHHHHHHHHh
Q 045196          100 LSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPT-NVRNIAVSFLRQALMLG  178 (255)
Q Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g  178 (255)
                      .+.....+.+..+.+.+.+        ....+..   .++.+++.++.+++....+.+-.+. ++-+.-.|+.+.++.+-
T Consensus       277 ~~~~~~~~l~G~~G~~~~P--------~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYll  345 (395)
T COG2807         277 VVLALLLMLVGLVGLLLAP--------GQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLL  345 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhh--------hhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHH
Confidence            7777776666666666652        1222222   3566667778888888888877654 44566778888888999


Q ss_pred             hhhhhhHHHhhh---cCCCchhHHHHHHHHHHH
Q 045196          179 ASVSPLLVVVGR---MSPSLSFLVFGALSIFSG  208 (255)
Q Consensus       179 ~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~  208 (255)
                      +.++|++.|+.+   .+|..+...++...++..
T Consensus       346 Aa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~  378 (395)
T COG2807         346 AAFGPWLFGFLHDATGSWSAPLVLLALATLLML  378 (395)
T ss_pred             HhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence            999999999532   234444444444444333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.60  E-value=1.5e-06  Score=73.00  Aligned_cols=121  Identities=8%  Similarity=-0.122  Sum_probs=72.9

Q ss_pred             eeecccCchhHHHHHHHHH---HHHHHHHHHHHHHh----hcch-hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCch
Q 045196           60 LNVGNLNFNLYFSVALNAL---MEIPAVVIGTVLLS----FTNR-RLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSW  131 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~d----r~gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (255)
                      ++....|.+....+.+..+   ...+..++.|+++|    |+|| |+.++++...++++..++...+    +.+.....+
T Consensus        32 yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p----~~~~~~~~~  107 (473)
T PRK10429         32 YYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAH----LFEGTAQYV  107 (473)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCC----CCCccHHHH
Confidence            3445567777666655544   55567788999999    5688 5566667776666655553321    000000011


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcccc-chhcHHHHHHHHHHHHHHhhhhhhh
Q 045196          132 PQLIIEGVGFMAASTAFDVMYIYCVELF-PTNVRNIAVSFLRQALMLGASVSPL  184 (255)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~p~  184 (255)
                      ...+..++...+.........++.+|+. ++++|.+..++-..++.+|+.+.+.
T Consensus       108 ~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~  161 (473)
T PRK10429        108 FVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG  161 (473)
T ss_pred             HHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222223334445556667778899998 5888999888876666666555443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.58  E-value=3.1e-07  Score=74.31  Aligned_cols=170  Identities=11%  Similarity=-0.038  Sum_probs=81.2

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHHHHHHHH---HHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 045196           33 GTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFSVALNAL---MEIPAVVIGTVLLSFTNRRLLLSRSAYVAG  108 (255)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr~grr~~l~~~~~~~~  108 (255)
                      |++.+++.....+..++..+...-..+.|+++ .|.+....+.+.++   ..++..++.|.++||+|.||-++.......
T Consensus         5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~   84 (412)
T PF01306_consen    5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILL   84 (412)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHH
Confidence            45555554444444444444444445678875 78887777666554   566778899999999996665444332222


Q ss_pred             H--HHHHH-HHhcccCCCCCCCCCchHHHHH-HHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhh
Q 045196          109 S--ASILC-TLFSNNNNNKGKGGGSWPQLII-EGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL  184 (255)
Q Consensus       109 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~  184 (255)
                      +  ..+.. .+.+..      ..+.+...+. .+..++...+..++.-+++.+..  +..+.-.|=...++.+|.+++..
T Consensus        85 ~l~~pff~~v~~pll------~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~  156 (412)
T PF01306_consen   85 LLFGPFFIYVFGPLL------QSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASL  156 (412)
T ss_dssp             HTCHHHHHHTHHHHH------HTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHH
Confidence            1  11111 111100      0122211111 11111112222244433333221  22334456667788888888888


Q ss_pred             HHHh-hhcCCCchhHHHHHHHHHHHHH
Q 045196          185 LVVV-GRMSPSLSFLVFGALSIFSGVL  210 (255)
Q Consensus       185 ~~~~-~~~~~~~~~~~~~~~~~~~~~~  210 (255)
                      +.|. ...+....+++..+..++..++
T Consensus       157 ~~G~L~~i~p~~~fwi~s~~~~il~ll  183 (412)
T PF01306_consen  157 LAGILFNINPNIIFWIASAAAIILLLL  183 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhheeeeeCccHHHHHHHHHHHHHHHH
Confidence            8773 3333445566555444433333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.45  E-value=6.8e-05  Score=60.25  Aligned_cols=152  Identities=9%  Similarity=0.020  Sum_probs=102.1

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeeccc-----CchhHHH---HHHHHHHHHHHHHHHHHHHh-hcc
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNL-----NFNLYFS---VALNALMEIPAVVIGTVLLS-FTN   95 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~g~l~d-r~g   95 (255)
                      ...++++..+|+.++.+...++..+..++.-    ..++.+     |.++..+   +.+.+.+.++|....|++.. |.+
T Consensus       198 ~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD----~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~  273 (403)
T PF03209_consen  198 REAWRQVWASPQARRFFVFLFLGTLAFFMQD----VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLG  273 (403)
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHhhH----HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4567788888886665554444444333222    223333     4444333   34455677888888887766 678


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHH
Q 045196           96 RRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQAL  175 (255)
Q Consensus        96 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  175 (255)
                      +++...+++..+.++..++....       ...+.+.+....++.+++.+.......+.+.++.+++..|..+|.-....
T Consensus       274 ~~~~a~~G~~~~~~~f~lii~a~-------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQ  346 (403)
T PF03209_consen  274 KKRTAALGCLLGALAFALIILAG-------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQ  346 (403)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH-------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHH
Confidence            88888888888888777666553       22467777777788888777777777888889998888899998887777


Q ss_pred             HHhhhhhhhHHH
Q 045196          176 MLGASVSPLLVV  187 (255)
Q Consensus       176 ~~g~~~~p~~~~  187 (255)
                      .++..++..+.+
T Consensus       347 A~A~Glg~~~GG  358 (403)
T PF03209_consen  347 AIARGLGTFLGG  358 (403)
T ss_pred             HHHHHHHHHHHH
Confidence            666666655554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PTZ00207 hypothetical protein; Provisional

Probab=98.45  E-value=5e-06  Score=70.83  Aligned_cols=177  Identities=10%  Similarity=-0.053  Sum_probs=101.5

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeeccc-Cc--hh--HH-HHHHHHHHHHHHHHHHHHHHhhcchh---
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNL-NF--NL--YF-SVALNALMEIPAVVIGTVLLSFTNRR---   97 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~--~~-~~~~~~~~~~~~~~~~g~l~dr~grr---   97 (255)
                      ++++.+++..+|..++..++.........+....+.+.+ |.  +.  .. ...+.++++.+|.+..|+++...-||   
T Consensus       345 t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~  424 (591)
T PTZ00207        345 TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAE  424 (591)
T ss_pred             hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccc
Confidence            677777777655433333333222211111122222333 32  11  11 23567788889999998887322222   


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHH
Q 045196           98 -----LLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLR  172 (255)
Q Consensus        98 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  172 (255)
                           ++.+....++.+..+++.+..          ....+.+..++.+++.|..+++....++|+|. +.-|+-.-+..
T Consensus       425 ~r~prt~~l~~~~~~~~~~lll~~~~----------p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~  493 (591)
T PTZ00207        425 DRVPITIALFIPSVCIITMLTLFLTL----------PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCF  493 (591)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHC----------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHh
Confidence                 222222223445555555442          21456677778888899999999999999999 77777666666


Q ss_pred             HHHHHhhhhh-hhHHH-h-hh-------------cCCCchhHHHHHHHHHHHHHHHHh
Q 045196          173 QALMLGASVS-PLLVV-V-GR-------------MSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       173 ~~~~~g~~~~-p~~~~-~-~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      ...-+|+.+- -.+.| + ++             .....+|++.+++++++.+....+
T Consensus       494 ~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        494 LGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence            6666666543 23333 1 11             123457899999998888776544

>PRK11462 putative transporter; Provisional

Probab=98.44  E-value=1.3e-05  Score=67.07  Aligned_cols=127  Identities=10%  Similarity=-0.060  Sum_probs=79.6

Q ss_pred             hheeeeecccCchhHHHHHHHHH---HHHHHHHHHHHHHhh----cchh-HHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 045196           56 YGIQLNVGNLNFNLYFSVALNAL---MEIPAVVIGTVLLSF----TNRR-LLLSRSAYVAGSASILCTLFSNNNNNKGKG  127 (255)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr----~grr-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (255)
                      |.+.++....|.++...+.+..+   .-.+.-++.|+++||    +||| +.++++.+..+++.+++...+. .   +..
T Consensus        31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~-~---s~~  106 (460)
T PRK11462         31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD-L---SMN  106 (460)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCC-C---Ccc
Confidence            33334456678888777666555   445677999999996    5775 4555666777776655544320 0   000


Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhhhhccccc-hhcHHHHHHHHHHHHHHhhhhhhhHH
Q 045196          128 GGSWPQLIIEGVGFMAASTAFDVMYIYCVELFP-TNVRNIAVSFLRQALMLGASVSPLLV  186 (255)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~p~~~  186 (255)
                      .......+..++...+.........++.+|+.+ .++|++..++-..++.+|+.+++.+.
T Consensus       107 ~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462        107 GKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001122222233344555555677888999986 68899999999888888877665553

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.40  E-value=3.4e-05  Score=62.48  Aligned_cols=110  Identities=15%  Similarity=0.042  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCch--HHHHHHHHHHHHHhhhh
Q 045196           71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSW--PQLIIEGVGFMAASTAF  148 (255)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  148 (255)
                      +...+..+..++..+.+.|+.||+|-|....++..+.++...+=.......    -++..+  +......+.....-...
T Consensus        83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~----v~~~f~~~l~~~Gq~iaa~Aq~Fim  158 (480)
T KOG2563|consen   83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPF----VPPLFRRPLTHTGQSIAAAAQPFIL  158 (480)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcc----ccccchhhhhHHhHHHHHHhhhHhh
Confidence            444566678888999999999999999999999988888776654442100    002223  22233333333222222


Q ss_pred             hhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhh
Q 045196          149 DVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL  184 (255)
Q Consensus       149 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~  184 (255)
                      .+..-+..-+||+++|+++..+..+.+.+|..++-+
T Consensus       159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            333445666799999999999988887666654433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.39  E-value=4.4e-05  Score=63.94  Aligned_cols=138  Identities=15%  Similarity=0.195  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLLL-SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      .+..+...+..++.|-++|+-|+||.+ .+...++.+++.++.+..        ....+...++.++...+.........
T Consensus        77 sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~--------~~~~~~~~~l~iia~v~~~~~~vfyn  148 (477)
T PF11700_consen   77 SISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS--------PGQWWLALVLFIIANVGYEASNVFYN  148 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667788899999998866554 455555556666666652        23445666666677777777778889


Q ss_pred             hhhccccchhcH--------------------------HHHHHHHHHHHHHhhhhhhhHHHh---hh-------cCCCch
Q 045196          153 IYCVELFPTNVR--------------------------NIAVSFLRQALMLGASVSPLLVVV---GR-------MSPSLS  196 (255)
Q Consensus       153 ~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~g~~~~p~~~~~---~~-------~~~~~~  196 (255)
                      ++++|+.+++.+                          ++..+.....+++|+++.-.+.-.   ..       ...+..
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~  228 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA  228 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence            999999988877                          899999999999988765444321   11       112334


Q ss_pred             hHHHHHHHHHHHHH-HHHhccCCC
Q 045196          197 FLVFGALSIFSGVL-SLWLPETKN  219 (255)
Q Consensus       197 ~~~~~~~~~~~~~~-~~~~~e~~~  219 (255)
                      +.+.++..++..+- .+++|+.++
T Consensus       229 ~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  229 FLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCC
Confidence            55555544443333 345676544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.39  E-value=3.7e-06  Score=67.86  Aligned_cols=188  Identities=8%  Similarity=-0.036  Sum_probs=102.6

Q ss_pred             CccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccC---chhHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH
Q 045196           24 SDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLN---FNLYFSVALNALMEIPAVVIGTVLLSFTNR-RLL   99 (255)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~   99 (255)
                      -..+.+++++++++....++..+.....+..++.+..-+..-+   .+......+..++.++++.+.|.+.||.+. |..
T Consensus       255 f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~  334 (480)
T KOG2563|consen  255 FPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT  334 (480)
T ss_pred             HHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            3457788899887443332222222222222222221111112   234445556667888899999999999875 344


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhh
Q 045196          100 LSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGA  179 (255)
Q Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  179 (255)
                      .++......++...+.....      .....+.+.....+.+++..+..|+..-+..|..-+..-++..|+.+..+.+.+
T Consensus       335 ~~v~~~~~~v~~~~l~~~t~------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~  408 (480)
T KOG2563|consen  335 TLVLYLFALVGTLMLLTCTL------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFG  408 (480)
T ss_pred             HHHHHHHHHHHHHHHHHhhc------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHH
Confidence            44444443333222222210      112333444455556666677778888888888644455777899999988888


Q ss_pred             hhhhhHHHhh--hcC---CCch-hHHHHHHHHHHHHHHHHhccC
Q 045196          180 SVSPLLVVVG--RMS---PSLS-FLVFGALSIFSGVLSLWLPET  217 (255)
Q Consensus       180 ~~~p~~~~~~--~~~---~~~~-~~~~~~~~~~~~~~~~~~~e~  217 (255)
                      ++-+++.+..  ..+   +..+ -+.....+++.+++..++++.
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  409 VILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             HHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            8777777632  222   1222 333444444555555555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.38  E-value=8.7e-05  Score=61.71  Aligned_cols=151  Identities=9%  Similarity=0.030  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhheeeeecccCc-----hh-HHHH--HHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 045196           38 AKRLIMVMTAGFGVGFVYYGIQLNVGNLNF-----NL-YFSV--ALNAL-MEIPAVVIGTVLLSFTNRRLLLSRSAYVAG  108 (255)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~--~~~~~-~~~~~~~~~g~l~dr~grr~~l~~~~~~~~  108 (255)
                      +++++......++..+.|+..-..-..+..     .. ....  ....+ ..++..++.+++++|++|++++-+......
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~   85 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFL   85 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHH
Confidence            455666777777777777766433333222     11 1111  11112 233347888999999999998877666666


Q ss_pred             HHHHHHHHhcccCCCC-CCC---------C-----------CchHHHHHHHHHHHHHhhhhh-hhhhhhccccchhcHHH
Q 045196          109 SASILCTLFSNNNNNK-GKG---------G-----------GSWPQLIIEGVGFMAASTAFD-VMYIYCVELFPTNVRNI  166 (255)
Q Consensus       109 ~~~~~~~~~~~~~~~~-~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~  166 (255)
                      ....+..+......+. +++         .           ..|...++.+..-.......+ +.|.+++|++..++-.+
T Consensus        86 ~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakR  165 (472)
T TIGR00769        86 GFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKR  165 (472)
T ss_pred             HHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5555554442211111 000         0           133333333344444444555 88999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHh
Q 045196          167 AVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       167 ~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      -.++....+++|.++++.+..+
T Consensus       166 fy~l~~~ganlg~i~sg~~~~~  187 (472)
T TIGR00769       166 FYALFGLGANVALIFSGRTIKY  187 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.37  E-value=4.3e-05  Score=64.26  Aligned_cols=141  Identities=12%  Similarity=0.108  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhh-cchhHHH--HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHH
Q 045196           70 YFSVALNALMEIPAVVIGT----VLLSF-TNRRLLL--SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFM  142 (255)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~g----~l~dr-~grr~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (255)
                      .....+.++.-++..++..    ++.|| .+.+...  .++.++.+++...+.+...+. +.....+.|..+...++.++
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~-~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFA-DAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccCHHHHHHHHHHHHH
Confidence            3333444444444444433    34443 2223333  667777766666555421111 11112466666777777777


Q ss_pred             HHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh--hcCCCchhHHHHHHHHHHHHHH
Q 045196          143 AASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG--RMSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       143 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      +-....|...++..+..|++.||+.+|+......+|..+++.+....  ..++...+...++.+++..++.
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence            77788899999999999999999999999999999999988877632  2234444555555555544444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.32  E-value=1.4e-06  Score=72.23  Aligned_cols=129  Identities=13%  Similarity=-0.044  Sum_probs=79.0

Q ss_pred             hheeeeecccCchhHHHHHHHHHHHH---HHHHHHHHHHh----hcchhHH-HHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 045196           56 YGIQLNVGNLNFNLYFSVALNALMEI---PAVVIGTVLLS----FTNRRLL-LSRSAYVAGSASILCTLFSNNNNNKGKG  127 (255)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~l~d----r~grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (255)
                      |...++.+..|.++.....+..+..+   +..++.|+++|    |+|||+. ++++....+++.+++....+..  ....
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~--~~~~  100 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAG--LSFT  100 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccch--hhhh
Confidence            33344556668887777666655444   45578999999    7887655 4567777777666665441000  0000


Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhhhhccccc-hhcHHHHHHHHHHHHHHhhhhhhhHH
Q 045196          128 GGSWPQLIIEGVGFMAASTAFDVMYIYCVELFP-TNVRNIAVSFLRQALMLGASVSPLLV  186 (255)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~p~~~  186 (255)
                      .......+..++...+.........++.+|+.+ +++|....+.-..+..+|+++...+.
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~  160 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLA  160 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            011122333334455556666778899999997 46899999888888877775444433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.27  E-value=2.8e-05  Score=67.36  Aligned_cols=130  Identities=14%  Similarity=0.074  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 045196           80 EIPAVVIGTVLLSF-TNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVEL  158 (255)
Q Consensus        80 ~~~~~~~~g~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  158 (255)
                      .-+..+++|+++|+ +||++.+.++.++..+...++.+... .... +.......++.+.+...+.++.-+...+...|.
T Consensus        36 ~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~~-~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdq  113 (654)
T TIGR00926        36 CYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSSG-HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQ  113 (654)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-cccc-cchHHHHHHHHHHHHHhhccccccCchhhhHhh
Confidence            34567889999996 69999999998888877766655321 0000 000112234445555666677778888889998


Q ss_pred             cchh---cHHHHHHHHHHHHHHhhhhhhhHHHhhh--c-------CCCchhHHHHHHHHHHHHHH
Q 045196          159 FPTN---VRNIAVSFLRQALMLGASVSPLLVVVGR--M-------SPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       159 ~p~~---~r~~~~~~~~~~~~~g~~~~p~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~  211 (255)
                      ++.+   .|...+.+.++..++|+++++.+..+..  .       ++...|.+.+++.+++.++.
T Consensus       114 f~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       114 FEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence            8753   3677888889999999999988877432  1       24445666666666555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.27  E-value=3.7e-05  Score=65.06  Aligned_cols=114  Identities=10%  Similarity=-0.052  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHH----HHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhh
Q 045196           73 VALNALMEIPAVVIG----TVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAF  148 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~----g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (255)
                      ..+..+..++..++.    +++.+|++..+.+.++.++.+++.+.+.....+.+. +..-+.+..+...++.+++.....
T Consensus       322 ~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~-~~~vs~~~~~~~~~l~~~ge~~~~  400 (500)
T PRK09584        322 QALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAND-AGIVSVNWLIASYGLQSIGELMIS  400 (500)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444    555556666677888888888887776655322111 111234455666667777777788


Q ss_pred             hhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          149 DVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       149 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      |....++.+..|++.||+.+|+......+|+.++..+.+
T Consensus       401 p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        401 GLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887666666666555543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=2.6e-06  Score=67.64  Aligned_cols=181  Identities=12%  Similarity=-0.028  Sum_probs=98.4

Q ss_pred             CCCccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccC---chhHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 045196           22 NNSDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLN---FNLYFSVALNALMEIPAVVIGTVLLSFTN--   95 (255)
Q Consensus        22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--   95 (255)
                      ..+..++++++++|+.+...........+..+.--.++.|+. ++.   +.......-.++...+++.+.|.+.||++  
T Consensus       257 ~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~  336 (464)
T KOG3764|consen  257 TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHL  336 (464)
T ss_pred             cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCch
Confidence            344557889999987443322222222233333333333322 222   22333444456778889999999999999  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhh---hhhhhccccchh---cHHHHHH
Q 045196           96 RRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDV---MYIYCVELFPTN---VRNIAVS  169 (255)
Q Consensus        96 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~p~~---~r~~~~~  169 (255)
                      |-.....+.+..++++....+.          ++...+++-.+..++..+...+.   ...+..|.-..+   .-|...+
T Consensus       337 ~wl~~~~gl~~~G~~~~~iP~~----------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVya  406 (464)
T KOG3764|consen  337 RWLLSLGGLATVGVSSGPIPFA----------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYA  406 (464)
T ss_pred             hHHHHHHHHHHHHHHhchhHhh----------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHH
Confidence            5333444555555444444444          22222222222222222222232   333333333333   4578888


Q ss_pred             HHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196          170 FLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       170 ~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  212 (255)
                      +......+|.+++|.+.+.  ...+..|...+.++..++-.-+..
T Consensus       407 Iad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  407 IADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             HHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999984  444566666666666666544443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.21  E-value=9.4e-05  Score=60.95  Aligned_cols=125  Identities=11%  Similarity=-0.030  Sum_probs=81.2

Q ss_pred             hheeeeecccCchhHHHHHHHHHHH---HHHHHHHHHHHhh----cch-hHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 045196           56 YGIQLNVGNLNFNLYFSVALNALME---IPAVVIGTVLLSF----TNR-RLLLSRSAYVAGSASILCTLFSNNNNNKGKG  127 (255)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~l~dr----~gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (255)
                      |.+.++....|.++...+.+..++.   .+.-++.|.++||    +|| |+.++++.+..++.+.++...+..    +..
T Consensus        34 yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~----~~~  109 (467)
T COG2211          34 YLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDF----SMT  109 (467)
T ss_pred             HHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCc----ccC
Confidence            3333445667888888777766544   4567899999996    565 456667777777777666655310    001


Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhhhhccccc-hhcHHHHHHHHHHHHHHhhhhhhh
Q 045196          128 GGSWPQLIIEGVGFMAASTAFDVMYIYCVELFP-TNVRNIAVSFLRQALMLGASVSPL  184 (255)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~p~  184 (255)
                      .......+...+...+.+.......++.+|+.+ +++|.+-.+.-..+..+|+++...
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~  167 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAV  167 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233334444555666677778889999975 577999999888888877654433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.18  E-value=1.4e-05  Score=64.82  Aligned_cols=106  Identities=17%  Similarity=0.099  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcch-------hHHHHH-HH---HHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHH
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNR-------RLLLSR-SA---YVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFM  142 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~gr-------r~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (255)
                      .+...+..+|.+++|.++||+.|       .+.--+ +.   .++..+.++....        ...+.+..+++.+++..
T Consensus       290 ~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~--------~~~s~~~~~il~~~g~~  361 (493)
T KOG1330|consen  290 GVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF--------TSSSMIFGLILFLVGET  361 (493)
T ss_pred             hHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHH
Confidence            44556778899999999998432       221111 11   1111111111111        11233344444444444


Q ss_pred             HHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH-HhhhhhhhHHH
Q 045196          143 AASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM-LGASVSPLLVV  187 (255)
Q Consensus       143 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~g~~~~p~~~~  187 (255)
                      .....++...-+..|+.|++.|.++.++...+.. +|.+-+|++.|
T Consensus       362 ~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivG  407 (493)
T KOG1330|consen  362 ISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVG  407 (493)
T ss_pred             HHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceeh
Confidence            4444556666778889999999999999987775 45567776666

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.16  E-value=7.4e-05  Score=62.00  Aligned_cols=148  Identities=18%  Similarity=0.191  Sum_probs=98.5

Q ss_pred             ecccCchhHHHHHHHHHHHHH--HHHHHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHH
Q 045196           62 VGNLNFNLYFSVALNALMEIP--AVVIGTVLLSFT-----NRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQL  134 (255)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~l~dr~-----grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (255)
                      ...++.++.....+.++..++  ..++.|.++|-+     .||+-++++.++++++.+.+.....      ...+.....
T Consensus        17 ~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~------~~~s~~~~~   90 (433)
T PF03092_consen   17 KDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA------SESSAAIAV   90 (433)
T ss_pred             HHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc------ccchhhhHH
Confidence            455778877777776666654  679999999975     3666667777777666666655531      012333444


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcccc---chhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHH
Q 045196          135 IIEGVGFMAASTAFDVMYIYCVELF---PTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGV  209 (255)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~  209 (255)
                      ++.++..++......+.-++..|..   |.+ |+.-.+.......+|++++..+.|.  ...+....|.+.+++.++..+
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~  169 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI  169 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence            5555666666666677777888875   444 7788888888888899888887773  444566677777777666655


Q ss_pred             HHHHh-cc
Q 045196          210 LSLWL-PE  216 (255)
Q Consensus       210 ~~~~~-~e  216 (255)
                      ..+++ +|
T Consensus       170 ~~~~~~~e  177 (433)
T PF03092_consen  170 VALFLLEE  177 (433)
T ss_pred             HHHHhhhh
Confidence            55444 44

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.13  E-value=0.00012  Score=51.36  Aligned_cols=106  Identities=6%  Similarity=-0.053  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhh
Q 045196           71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDV  150 (255)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (255)
                      ....+......+++++.+.+.+++|.|+.++++.+...+.......           .+.+.++....+.+++.+..+..
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-----------~~~~~l~~~s~l~G~~~a~lW~a  109 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-----------PNSYTLYPASALLGFGAALLWTA  109 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHhhhhHHhhHh
Confidence            3334444556678888999999999999999998877654444322           24566777777888888888888


Q ss_pred             hhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          151 MYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       151 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ...++.+...++.|++-.++.......+.++|.++..
T Consensus       110 qg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  110 QGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             hhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999998888777777666665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.10  E-value=0.00011  Score=59.04  Aligned_cols=123  Identities=15%  Similarity=0.098  Sum_probs=77.0

Q ss_pred             cCchhHHHHHHHHH--HHHHHHHHHHHHHhhcc-----hhHHHH-HHHHHHHHHHHHHHHhcccCCC--CCCCCCch---
Q 045196           65 LNFNLYFSVALNAL--MEIPAVVIGTVLLSFTN-----RRLLLS-RSAYVAGSASILCTLFSNNNNN--KGKGGGSW---  131 (255)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~~~~~~g~l~dr~g-----rr~~l~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---  131 (255)
                      ++........+.++  ..-+..+..|+.+|+.+     ||..++ .+...+.....++.+....-..  .....+.+   
T Consensus        10 L~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~   89 (403)
T PF03209_consen   10 LGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL   89 (403)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence            34444444444433  33457899999999988     776554 4444444433333332211111  01112222   


Q ss_pred             -HHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          132 -PQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       132 -~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                       ...+.+.+.+.+.........+++.|..|++.|+++.++.+..--+|.+++..+.+
T Consensus        90 ~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g  146 (403)
T PF03209_consen   90 ALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFG  146 (403)
T ss_pred             HHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence             23334445566666777888999999999999999999999998888888888877

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.96  E-value=0.00014  Score=60.39  Aligned_cols=144  Identities=19%  Similarity=0.158  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSN-NNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYI  153 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (255)
                      +.+++.++|..+......+..-|+++.++.++.++..+.-..... .+..- ..++.+..+.-.++........+-....
T Consensus       263 vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~-Gi~d~~f~lgd~~l~~~~~~i~~mP~lv  341 (433)
T PF03092_consen  263 VGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDL-GIPDQWFALGDTILEEVIGMIAFMPSLV  341 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeee-CcCCeEEEEEhHHHHHHHHHHHHHHHHH
Confidence            344455666666665555667777777776665544443222110 00000 0112232233333444444444556677


Q ss_pred             hhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh-------hcC---CCchhHHHHHHHHHHHHHHHHhccCCC
Q 045196          154 YCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG-------RMS---PSLSFLVFGALSIFSGVLSLWLPETKN  219 (255)
Q Consensus       154 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (255)
                      +++|+.|+..-|+.+++...+.++|..++..+....       ...   .+...++..++.++...+..++|+.++
T Consensus       342 l~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  342 LAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence            899999999999999999999999888777766521       111   112233444445455555556776443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.95  E-value=8.9e-05  Score=45.42  Aligned_cols=57  Identities=16%  Similarity=0.144  Sum_probs=43.0

Q ss_pred             HHHHHhhheeeeecccCchhHHHHHHHHH---HHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 045196           50 GVGFVYYGIQLNVGNLNFNLYFSVALNAL---MEIPAVVIGTVLLSFTNRRLLLSRSAYV  106 (255)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr~grr~~l~~~~~~  106 (255)
                      ..+..+-..+.+..+.|.+....+++.++   ..+++.+++|.++||++|++..+.....
T Consensus        15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            33444444567788899998888777664   6778999999999999998887765544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.94  E-value=0.0005  Score=54.46  Aligned_cols=138  Identities=11%  Similarity=0.012  Sum_probs=99.5

Q ss_pred             ecccCchhHHHHHHHHH---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH
Q 045196           62 VGNLNFNLYFSVALNAL---MEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG  138 (255)
Q Consensus        62 ~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (255)
                      .++++.+.....+++.+   +.-..+++..++.+|+|.++.+.++.++.++..++=...           +...++....
T Consensus        39 r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-----------~~~~L~~gt~  107 (395)
T COG2807          39 RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-----------GLPLLFLGTL  107 (395)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-----------cHHHHHHHHH
Confidence            34556666666666554   445577889999999999999888887776665554332           3455666667


Q ss_pred             HHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH-h-hh-cCCCchhHHHHHHHHHHHHHH
Q 045196          139 VGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV-V-GR-MSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      +.+.+.+..+.+...++-+-||.+ -+..+|++.....+++.+++.+.. + .. .+|+..+.+.+..++++.+++
T Consensus       108 l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W  182 (395)
T COG2807         108 LAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW  182 (395)
T ss_pred             HHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            777778888889999999999976 577889988888888777766554 2 11 357778888888887776544

>PRK09848 glucuronide transporter; Provisional

Probab=97.91  E-value=0.00053  Score=57.30  Aligned_cols=123  Identities=7%  Similarity=-0.149  Sum_probs=63.9

Q ss_pred             ecccCchhHHHHHHH---HHHHHHHHHHHHHHHhhc----chhHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCchHH
Q 045196           62 VGNLNFNLYFSVALN---ALMEIPAVVIGTVLLSFT----NRRLLL-SRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQ  133 (255)
Q Consensus        62 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr~----grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (255)
                      ....|.+....+.+.   .+...+..++.|+++||.    |||+.. .++.+...+...++...+. .  ..+....+..
T Consensus        36 ~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~  112 (448)
T PRK09848         36 TDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPT-D--WSHSSKVVYA  112 (448)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcC-C--CCcchHHHHH
Confidence            344566665555444   356677889999999986    766644 5555555544444332210 0  0000111122


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhccccc-hhcHHHHHHHHHHHHH-----HhhhhhhhHHH
Q 045196          134 LIIEGVGFMAASTAFDVMYIYCVELFP-TNVRNIAVSFLRQALM-----LGASVSPLLVV  187 (255)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~-----~g~~~~p~~~~  187 (255)
                      .....+...+.+...+...++..|+.+ .++|....++-...+.     ++..++|.+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233344444555556666676654 4568776655543322     34445666554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=0.0011  Score=54.87  Aligned_cols=113  Identities=15%  Similarity=0.034  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHHHhcccCCCCCC--------CCCchHHHHHHHHHH
Q 045196           73 VALNALMEIPAVVIGTVLLSF---TNRRLLLSRSAYVAGSASILCTLFSNNNNNKGK--------GGGSWPQLIIEGVGF  141 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr---~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  141 (255)
                      .+..+++++++....+.+.+|   +||++.+.++..+..+.+++.....+.+.+..+        ..+.....+..++.+
T Consensus       285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G  364 (461)
T KOG3098|consen  285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG  364 (461)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence            345567888888888888865   688998888887777766666554433321111        112335555566667


Q ss_pred             HHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHH
Q 045196          142 MAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLV  186 (255)
Q Consensus       142 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~  186 (255)
                      +.-.......+.++...+| +.|..+.++.-+...+++.++-+..
T Consensus       365 ~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  365 FGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             hHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhh
Confidence            6667777888999999994 5688888888777777766554443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.80  E-value=0.0014  Score=54.14  Aligned_cols=124  Identities=9%  Similarity=-0.103  Sum_probs=76.6

Q ss_pred             eecccCchhHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           61 NVGNLNFNLYFSVAL---NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        61 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      |..+.|.+....+..   .++.++.|+++..++.+|+|..+.-+++.....++..+............+..+...++...
T Consensus       284 yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi  363 (432)
T PF06963_consen  284 YLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGI  363 (432)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Confidence            344447666555444   34567788999999999999888777776655544443332211110000011122333344


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhh
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL  184 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~  184 (255)
                      .+..++.-+.--...-++.|..|+++||+..|.-+...++...+.-.
T Consensus       364 ~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  364 ALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             HHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            44454444555567778999999999999999998888877665433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.73  E-value=0.00074  Score=52.58  Aligned_cols=105  Identities=22%  Similarity=0.153  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY  154 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (255)
                      ...+...++.++.|.+.||+|||+.+..+.....+..+...+..        ....+..++.....++..+...+...++
T Consensus        47 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          47 AFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------NVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34455566679999999999999877777765344434444431        1134455555555566666677889999


Q ss_pred             hccccch-hcHHHHHHHHHH-HHHHhhhhhhhHHH
Q 045196          155 CVELFPT-NVRNIAVSFLRQ-ALMLGASVSPLLVV  187 (255)
Q Consensus       155 ~~e~~p~-~~r~~~~~~~~~-~~~~g~~~~p~~~~  187 (255)
                      ..|.+|. +.|+...+.... ...++..++|.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999997 668888888777 46677777776554

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.72  E-value=0.0079  Score=50.57  Aligned_cols=150  Identities=13%  Similarity=0.062  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhee-----eeecccCchh--HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 045196           38 AKRLIMVMTAGFGVGFVYYGIQ-----LNVGNLNFNL--YFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSA  110 (255)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~  110 (255)
                      +++++...+++++..+.|..+-     ..+...|...  ..-....--+.++...+..+++++++|.+++-+........
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~f  102 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGF  102 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            5667777777777777666543     2222333321  11111111244556777889999999999887766665555


Q ss_pred             HHHHHHhcccCCCC-CCCC--------------------CchHHHHHHHHHHHHHhhhhh-hhhhhhccccchhcHHHHH
Q 045196          111 SILCTLFSNNNNNK-GKGG--------------------GSWPQLIIEGVGFMAASTAFD-VMYIYCVELFPTNVRNIAV  168 (255)
Q Consensus       111 ~~~~~~~~~~~~~~-~~~~--------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~  168 (255)
                      ..+.++..+...+. +++.                    +.|...++.+..-.......+ +.|.+++|+++.++-.+-.
T Consensus       103 F~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfY  182 (491)
T PF03219_consen  103 FALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFY  182 (491)
T ss_pred             HHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            55555442211110 0000                    012222222222223333334 5799999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhHHH
Q 045196          169 SFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       169 ~~~~~~~~~g~~~~p~~~~  187 (255)
                      ++....+++|.+++..+..
T Consensus       183 pl~g~ganigli~sG~~~~  201 (491)
T PF03219_consen  183 PLFGLGANIGLIFSGQLTS  201 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999988877665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.68  E-value=0.002  Score=51.49  Aligned_cols=116  Identities=15%  Similarity=0.139  Sum_probs=73.9

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 045196           63 GNLNFNLYFSVALNALMEIPAVVIGTVLLSFTNR-----RLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIE  137 (255)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-----r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
                      ..+|.++...+-+.....+.+.++.+.+..+..|     +-.+..+...+.-..+++...          .....+....
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~----------~~~~~l~~~s  359 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA----------RTPVVLYLGS  359 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc----------ccchhhhHHH
Confidence            4456665555444444445555555555554433     334444444444444444433          2333444445


Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      .+..+......+....+.....|.+.||+..|+....+.++-++||.+.|.
T Consensus       360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence            555555555567788889999999999999999999999999999999973

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.65  E-value=0.0072  Score=49.98  Aligned_cols=150  Identities=11%  Similarity=0.020  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhheeeeecccCch---hHHHHHH---HHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 045196           38 AKRLIMVMTAGFGVGFVYYGIQLNVGNLNFN---LYFSVAL---NAL-MEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSA  110 (255)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~-~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~  110 (255)
                      ++.++-..+.+++..+.|+.+-..-.++...   +....++   .-+ ++++..++..++++++.|.+++.+.......+
T Consensus        26 ~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~f  105 (509)
T COG3202          26 LKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGF  105 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            4556666667777777766554322222111   1111111   111 55667788889999999999887766666666


Q ss_pred             HHHHHHhcccCCCC--------------CCCC--------CchHHHHHHHHHHHHHhhhhh-hhhhhhccccchhcHHHH
Q 045196          111 SILCTLFSNNNNNK--------------GKGG--------GSWPQLIIEGVGFMAASTAFD-VMYIYCVELFPTNVRNIA  167 (255)
Q Consensus       111 ~~~~~~~~~~~~~~--------------~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~  167 (255)
                      .++.++......+.              .+..        +.|...++..+.-.......+ +.|..+.|++..++-.+-
T Consensus       106 F~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRF  185 (509)
T COG3202         106 FALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRF  185 (509)
T ss_pred             HHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhh
Confidence            66655543211111              1101        124444444444444444444 788999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhHHH
Q 045196          168 VSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       168 ~~~~~~~~~~g~~~~p~~~~  187 (255)
                      .++.+..++++..++..+..
T Consensus       186 y~lf~l~~ni~lllsg~~~~  205 (509)
T COG3202         186 YPLFGLGANISLLLSGEVTS  205 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999998887766665

>TIGR01272 gluP glucose/galactose transporter

Probab=97.65  E-value=0.00024  Score=56.37  Aligned_cols=59  Identities=17%  Similarity=-0.046  Sum_probs=52.6

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          129 GSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ++...++..++.+.+.+...+....+++++.|++.+++.+++.+.+..+|.+++|++.+
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~   67 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGG   67 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            45667777778888888888999999999999999999999999999999999999987

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.63  E-value=0.0019  Score=52.61  Aligned_cols=128  Identities=15%  Similarity=0.088  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 045196           79 MEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVEL  158 (255)
Q Consensus        79 ~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  158 (255)
                      ..++.-+....+.|.+|-|++++++.+...+...++.+.          ++.+.+-+.-+..+...+. -.+.++++=-.
T Consensus        53 Syl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~----------~sv~~mq~~q~~yg~~~a~-evay~sYiys~  121 (412)
T PF01770_consen   53 SYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG----------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSV  121 (412)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------CcHHHHHHHHHHHHHHHHH-HHHHHHHheee
Confidence            344556777889999999999999988877777776666          4666666666666654433 45666777777


Q ss_pred             cchhcHHHHHHHHHHHHHHhhh----hhhhHHHhhhcCCCchhHHHHHHHHHHHHHHHHhccC
Q 045196          159 FPTNVRNIAVSFLRQALMLGAS----VSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPET  217 (255)
Q Consensus       159 ~p~~~r~~~~~~~~~~~~~g~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  217 (255)
                      .|++.--++.+......-+|.+    +|.++.............+..+...++.++.+++|..
T Consensus       122 v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  122 VDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            7777666677666555544444    4444444332223233344444445556666778754

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.62  E-value=0.0082  Score=50.21  Aligned_cols=114  Identities=16%  Similarity=0.146  Sum_probs=83.3

Q ss_pred             cccCchhHHHH---HHHHHHHHHHHHHHH-HHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH
Q 045196           63 GNLNFNLYFSV---ALNALMEIPAVVIGT-VLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG  138 (255)
Q Consensus        63 ~~~~~~~~~~~---~~~~~~~~~~~~~~g-~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (255)
                      ..++.+.....   ...++...++.++.. .+...+|-|+.+..+.....+.....++.          ...|.......
T Consensus       270 ~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~----------~~~w~~~~~~v  339 (463)
T KOG2816|consen  270 AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA----------TETWMMFAAGV  339 (463)
T ss_pred             eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh----------ccchhhhHHHH
Confidence            34566544433   233445555665554 78888898888888888888888888777          46666555444


Q ss_pred             HHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          139 VGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      +..+ .....+...+..+-+..++.+|+++++......+.++++|.+.+
T Consensus       340 ~~~~-~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~  387 (463)
T KOG2816|consen  340 VVAL-AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYG  387 (463)
T ss_pred             HHHh-hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHH
Confidence            4443 44556888899999999999999999999999999999988876

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.49  E-value=0.022  Score=48.15  Aligned_cols=119  Identities=8%  Similarity=-0.100  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcch--hH-----HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           68 NLYFSVALNALMEIPAVVIGTVLLSFTNR--RL-----LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      ++.+.+.+..+.-++.+++.+++=.|.+|  |.     =+.++.++++++.+.+.+....... +...+.+.++...++.
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~-~~~~s~~wl~~~~~~~  387 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAM-YGHSSLPLMVLGLAVM  387 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCcCHHHHHHHHHHH
Confidence            34454556666556666666666555532  21     1567777777777666543322111 1113444455555556


Q ss_pred             HHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHH-HHhhhhhhhHHH
Q 045196          141 FMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQAL-MLGASVSPLLVV  187 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~~~p~~~~  187 (255)
                      ..+--...|+..+.++++.|++.||..+|...... .+|..++..+.+
T Consensus       388 t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~  435 (493)
T PRK15462        388 GFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD  435 (493)
T ss_pred             HHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666777999999999999999999999986643 566666666555

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.32  E-value=0.0033  Score=47.65  Aligned_cols=48  Identities=8%  Similarity=-0.159  Sum_probs=27.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhccc--cchhcHHHHHHHHHHHHHHh
Q 045196          131 WPQLIIEGVGFMAASTAFDVMYIYCVEL--FPTNVRNIAVSFLRQALMLG  178 (255)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~p~~~r~~~~~~~~~~~~~g  178 (255)
                      ....++.++.+++.=+..++..-...|.  ..++.-|.-.|+...++.+.
T Consensus       205 ~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  205 AFFYIFGFLAGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence            3455666666666666667766666665  23444556566655555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.27  E-value=0.013  Score=47.72  Aligned_cols=102  Identities=10%  Similarity=-0.024  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRL-LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      .+.++...+-.++.|.++|+.|+|| .+-+...+..++.+.+.+.+       +.+..+..+++..+...+.........
T Consensus        65 aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~-------~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          65 AIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIP-------PGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHHhcchhheehh
Confidence            3444555566788899999998655 44555555556666666663       112334555555566666677777888


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhhh
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASVS  182 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~  182 (255)
                      ++++++.+++.-++..++....+.+|+.+.
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~  167 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVIL  167 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHH
Confidence            999999998877877888777777777544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.25  E-value=4.1e-05  Score=65.05  Aligned_cols=159  Identities=14%  Similarity=0.121  Sum_probs=2.0

Q ss_pred             eeecccCchhHHHHHHHH---HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCC------C------
Q 045196           60 LNVGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNN------K------  124 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~------~------  124 (255)
                      .+-..++.+....+++.+   ++.++..++..++.+|..|-+.+-++.+++++..++..+-......      .      
T Consensus        28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~  107 (539)
T PF03137_consen   28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS  107 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence            344456666666655544   5666777777788888767677778888888777765542211000      0      


Q ss_pred             ------------------------CCCCC----chHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH
Q 045196          125 ------------------------GKGGG----SWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM  176 (255)
Q Consensus       125 ------------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  176 (255)
                                              .....    .+++++..++.+++....+++..+|+-|..+++.-+.-.|+.+....
T Consensus       108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~  187 (539)
T PF03137_consen  108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI  187 (539)
T ss_dssp             --------------------------------------------SSS---------------------------------
T ss_pred             ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence                                    00001    12344445566666677788999999999999988888888888777


Q ss_pred             HhhhhhhhHHH-----h---h--h--------------cCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          177 LGASVSPLLVV-----V---G--R--------------MSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       177 ~g~~~~p~~~~-----~---~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      +|.++|=.+.+     +   .  .              ..|+..|++.+++.++..+..+++|+..
T Consensus       188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l  253 (539)
T PF03137_consen  188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL  253 (539)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence            76655433332     0   0  0              1245567777777777777666776543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.19  E-value=0.051  Score=45.30  Aligned_cols=58  Identities=12%  Similarity=0.075  Sum_probs=44.4

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHH
Q 045196          129 GSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLV  186 (255)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~  186 (255)
                      +.+..++..++.++..|...+....+.++..++++|..+..+...+-.+|-.+|..+.
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666777778777777788888999999999998888887777777766665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.15  E-value=0.012  Score=51.49  Aligned_cols=85  Identities=5%  Similarity=-0.106  Sum_probs=50.0

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeee-cccCchhHHHHHHHHH----HHHHHHHHHHHHHhhcc--hhHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNV-GNLNFNLYFSVALNAL----MEIPAVVIGTVLLSFTN--RRLL   99 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g--rr~~   99 (255)
                      .++.++++|.++...+..++...........++.++ ..++.+......+.++    +.++|.+++|+++||++  .|+.
T Consensus       322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~  401 (633)
T TIGR00805       322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKA  401 (633)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHH
Confidence            356788888766555544444443332222233333 3567776665544432    45678999999999998  4556


Q ss_pred             HHHHHHHHHHHH
Q 045196          100 LSRSAYVAGSAS  111 (255)
Q Consensus       100 l~~~~~~~~~~~  111 (255)
                      +.++..+..+..
T Consensus       402 ~~~~~~~~~~~~  413 (633)
T TIGR00805       402 AYFAICLSTLSY  413 (633)
T ss_pred             HHHHHHHHHHHH
Confidence            665555555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.12  E-value=0.038  Score=45.15  Aligned_cols=60  Identities=13%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          128 GGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      .+.|..+++.+.-|...|..+...+..+.|-.|++.|-.++|.....-.+|-.++.++.-
T Consensus       333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l  392 (402)
T PF02487_consen  333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL  392 (402)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            356777777777787788888888888898899999999999998887777776666553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.02  E-value=0.0077  Score=49.11  Aligned_cols=113  Identities=12%  Similarity=-0.004  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchh---cHHHHHHHHHHH
Q 045196           98 LLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTN---VRNIAVSFLRQA  174 (255)
Q Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~  174 (255)
                      +.++++.++..+..+++.+....... +.....+...+.+.+..++.++.=+...++..|.++++   .|.+.+.+.+..
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~-~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSL-PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC-------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchh-hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            45667777777777764443211100 01112345566666677778888899999999999765   467788888999


Q ss_pred             HHHhhhhhhhHHHhhh--cCCCchhHHHHHHHHHHHHHH
Q 045196          175 LMLGASVSPLLVVVGR--MSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       175 ~~~g~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      .++|+++++.+.++..  .++...|.+.++..+++.+..
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            9999999988777533  556666777776666665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.99  E-value=0.16  Score=42.45  Aligned_cols=121  Identities=12%  Similarity=0.038  Sum_probs=78.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhcchh-------HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHH
Q 045196           67 FNLYFSVALNALMEIPAVVIGTVLLSFTNRR-------LLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGV  139 (255)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (255)
                      .++.+.+.+..+.-++..++..++..|.+|+       .-+.++..+++...+++........+.....+.+..+...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            4456666666666677777777777775433       123455666666655555442222221233456666777777


Q ss_pred             HHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          140 GFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       140 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      ..++--...|+..+++..+.|+...+..++........+..++..+.+
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            777777777999999999999999999998887766666655544443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.93  E-value=0.00021  Score=60.86  Aligned_cols=162  Identities=13%  Similarity=0.062  Sum_probs=0.0

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHH-HHHhhheeeeecccCchhHHHHHHHHH----HHHHHHHHHHHHHhhcc--hhHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGV-GFVYYGIQLNVGNLNFNLYFSVALNAL----MEIPAVVIGTVLLSFTN--RRLL   99 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g--rr~~   99 (255)
                      ..+++++||.+....+..+.-.+.. ++..|..-+.-.+++.+...+..+.++    +..+|.+++|++++|+.  .|..
T Consensus       297 ~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~  376 (539)
T PF03137_consen  297 ALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA  376 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH
Confidence            3455666665333222222222222 233333334444566666666666554    55578899999999874  3444


Q ss_pred             HHHHHHHHHHHHHH---HHH-----------hcccCC-------CC---------------------CCC--CCchHHHH
Q 045196          100 LSRSAYVAGSASIL---CTL-----------FSNNNN-------NK---------------------GKG--GGSWPQLI  135 (255)
Q Consensus       100 l~~~~~~~~~~~~~---~~~-----------~~~~~~-------~~---------------------~~~--~~~~~~~~  135 (255)
                      +.+..+...+..+.   ..+           ...+..       ++                     +.+  ......++
T Consensus       377 ~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~  456 (539)
T PF03137_consen  377 AKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLI  456 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHH
Confidence            43333333322222   111           011100       00                     000  01122333


Q ss_pred             HHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH-HhhhhhhhHHHh
Q 045196          136 IEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM-LGASVSPLLVVV  188 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~g~~~~p~~~~~  188 (255)
                      ..++..+..+.........+-..+|+++|+.|.|+.....+ +|.+-+|++.|.
T Consensus       457 ~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~  510 (539)
T PF03137_consen  457 LLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGA  510 (539)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhH
Confidence            33333333344444455556678899999999999988887 566788998873

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.028  Score=46.74  Aligned_cols=105  Identities=8%  Similarity=-0.007  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhh
Q 045196           71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDV  150 (255)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (255)
                      ....+......+.+++.+.+.|+.|.|+.++++........+...+.           +.+..+....+.|++.+..+..
T Consensus        54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-----------N~y~~yfssallG~Gaallw~G  122 (461)
T KOG3098|consen   54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-----------NSYYLYFSSALLGFGAALLWTG  122 (461)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-----------chHHHHHHHHHhhhhHHheecc
Confidence            33455556677889999999999999999999988776666555443           5677777777778777777888


Q ss_pred             hhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHH
Q 045196          151 MYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLV  186 (255)
Q Consensus       151 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~  186 (255)
                      -..+++|..+.+.+.+..++.......+.++|..+.
T Consensus       123 qG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  123 QGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             cceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence            889999999999999999999888877777665544

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.64  E-value=0.0067  Score=52.91  Aligned_cols=144  Identities=18%  Similarity=0.187  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc----cC------------C-------------------
Q 045196           78 LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSN----NN------------N-------------------  122 (255)
Q Consensus        78 ~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~----~~------------~-------------------  122 (255)
                      ++..+...+..+..-|.-|-+++-++.+++++..++..+-..    +.            .                   
T Consensus       143 ig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  222 (735)
T KOG3626|consen  143 IGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPS  222 (735)
T ss_pred             cchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCC
Confidence            455556666777777877777788888888777776654311    10            0                   


Q ss_pred             --CCC--CCCC--ch-HHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-----hh
Q 045196          123 --NKG--KGGG--SW-PQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-----GR  190 (255)
Q Consensus       123 --~~~--~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-----~~  190 (255)
                        +..  ...+  .| ++++..++.+.+....+++..+|+=|...++.-..-.|+.++...+|-++|=++.++     .+
T Consensus       223 ~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD  302 (735)
T KOG3626|consen  223 PENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD  302 (735)
T ss_pred             CCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec
Confidence              000  0111  22 333344455656666778888999999988888888899988887777666554431     11


Q ss_pred             c----------------CCCchhHHHHHHHHHHHHHHHHhccCCCCC
Q 045196          191 M----------------SPSLSFLVFGALSIFSGVLSLWLPETKNAP  221 (255)
Q Consensus       191 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (255)
                      .                .||..|++.+++.++..+.++++|++..+.
T Consensus       303 ~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~  349 (735)
T KOG3626|consen  303 FGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS  349 (735)
T ss_pred             cccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence            1                144457888888888888888888765543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.61  E-value=0.0043  Score=50.80  Aligned_cols=148  Identities=10%  Similarity=-0.017  Sum_probs=78.7

Q ss_pred             eeecccCchhHHHHHHHH---HHHHHHHHHHHHHHhh----cchhHHHHH-HHHHHHHHHHHHHHhcccCC--CCCCCC-
Q 045196           60 LNVGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSF----TNRRLLLSR-SAYVAGSASILCTLFSNNNN--NKGKGG-  128 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr----~grr~~l~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~-  128 (255)
                      .++..+|..-.+..++..   +..++..++.|..+||    +||||.++. +....++..+++.+..-...  .+++.. 
T Consensus        57 Pyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~  136 (498)
T KOG0637|consen   57 PYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKP  136 (498)
T ss_pred             HHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccc
Confidence            345566665444444333   3445567888999995    788776554 44455555555544321110  011111 


Q ss_pred             -CchH---HHHHHHHHHHHHhhhhhhhhhhhccccchhcHHH-HHHHHHHHHHHhhhhhhhHHHhhhcCCCchhHHHHHH
Q 045196          129 -GSWP---QLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNI-AVSFLRQALMLGASVSPLLVVVGRMSPSLSFLVFGAL  203 (255)
Q Consensus       129 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~  203 (255)
                       ..+.   .++...+.-+..-......-++..|+...+.+.+ +.+....+..+|+.++=.+..+.......+|.....+
T Consensus       137 ~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~~~~Ft~~~~~  216 (498)
T KOG0637|consen  137 VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYKIFPFTLTTAC  216 (498)
T ss_pred             cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceEEeehHHHHHH
Confidence             1111   1111222222333556778899999987666666 8888888888888776544433222233344444444


Q ss_pred             HHHH
Q 045196          204 SIFS  207 (255)
Q Consensus       204 ~~~~  207 (255)
                      .+.|
T Consensus       217 ~~~C  220 (498)
T KOG0637|consen  217 DLYC  220 (498)
T ss_pred             HHHH
Confidence            4333

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.46  E-value=0.18  Score=40.90  Aligned_cols=79  Identities=14%  Similarity=0.130  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHh---hheeeeecccCchhHHHHHHHHHHHHH--HHHHHHHHHh-----hcchhHHHHH-HHHH
Q 045196           38 AKRLIMVMTAGFGVGFVY---YGIQLNVGNLNFNLYFSVALNALMEIP--AVVIGTVLLS-----FTNRRLLLSR-SAYV  106 (255)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~l~d-----r~grr~~l~~-~~~~  106 (255)
                      ++.+....+.+..+++.+   ..+++.++.-+.+-. ...+.++...+  --+++..++|     |+|||+..++ +..+
T Consensus        30 ~~~illLl~LYllQGiP~GL~~~iP~lL~ak~vSyt-~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~l  108 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIGAIPLLLQAKGVSYT-SQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYL  108 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhhhhHHHhcCCCcchh-hhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHH
Confidence            344555666666663221   155566664444432 22333444444  3478888888     9999886544 3334


Q ss_pred             HHHHHHHHHHh
Q 045196          107 AGSASILCTLF  117 (255)
Q Consensus       107 ~~~~~~~~~~~  117 (255)
                      .+..+..+...
T Consensus       109 lG~~mllLs~~  119 (510)
T KOG3574|consen  109 LGLFMLLLSYL  119 (510)
T ss_pred             HHHHHHHHhhC
Confidence            44444444443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.21  E-value=0.054  Score=47.50  Aligned_cols=55  Identities=16%  Similarity=0.237  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH-HhhhhhhhHHHh
Q 045196          134 LIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM-LGASVSPLLVVV  188 (255)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~g~~~~p~~~~~  188 (255)
                      ++..++..+..+......+.++-..+|++.|+.++|+..++.+ +|.+-+|++.|+
T Consensus       590 l~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~  645 (735)
T KOG3626|consen  590 LALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGA  645 (735)
T ss_pred             HHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhh
Confidence            3334444444444445666777788999999999999988887 566788988873

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.07  E-value=0.15  Score=42.78  Aligned_cols=47  Identities=9%  Similarity=0.152  Sum_probs=35.3

Q ss_pred             HHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhh
Q 045196          138 GVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPL  184 (255)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~  184 (255)
                      ++..+.....+....+.-+.+..+..-|+-+.+.|+..++|+-.-..
T Consensus       413 ~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~  459 (544)
T PF13000_consen  413 VLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRT  459 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHH
Confidence            34444445555667777888888999999999999999999964433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.79  E-value=0.064  Score=43.89  Aligned_cols=73  Identities=7%  Similarity=0.109  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 045196           78 LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVE  157 (255)
Q Consensus        78 ~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  157 (255)
                      +-.++..+++.++.+|+.-+.-..+...++.++.++.++.          .+.+..++...+..+..+..-.....+ ..
T Consensus        70 ~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~----------~~v~~~l~Gv~las~ssg~GE~tfL~l-t~  138 (402)
T PF02487_consen   70 LPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS----------PSVWVRLLGVVLASLSSGLGEVTFLSL-TH  138 (402)
T ss_pred             HHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec----------cchhHHHHHHHHHhhhhhhhHHHHHHH-HH
Confidence            4556677889999998763322333334444455555443          455666666666665554443333333 44


Q ss_pred             ccch
Q 045196          158 LFPT  161 (255)
Q Consensus       158 ~~p~  161 (255)
                      .+|+
T Consensus       139 ~y~~  142 (402)
T PF02487_consen  139 FYGK  142 (402)
T ss_pred             hcCc
Confidence            5654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=95.65  E-value=1.3  Score=38.15  Aligned_cols=48  Identities=15%  Similarity=-0.004  Sum_probs=27.0

Q ss_pred             HHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH
Q 045196          139 VGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV  187 (255)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~  187 (255)
                      +.++..+...|+...+..+... +.-+...|-.+....+|+++|+++.+
T Consensus       119 ~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~  166 (521)
T PRK03612        119 LIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFP  166 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence            3344455555554444433222 11345567777777788887777766

>TIGR00806 rfc RFC reduced folate carrier

Probab=95.26  E-value=0.2  Score=42.12  Aligned_cols=97  Identities=5%  Similarity=-0.061  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRL--LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      +..+.+.++.+..|++-.++.|-.  .+.+..++.+...+++...          ++.|...+..++.........++..
T Consensus       306 ~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t----------~~Iw~~Y~~yvlf~~~y~flitia~  375 (511)
T TIGR00806       306 ASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQS----------HDIWVLYVTYVLFRGIYQFLVPIAT  375 (511)
T ss_pred             HHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcc----------cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455667888888866664432  3333344444444444444          6788777777777666666667767


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHhhhh
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  181 (255)
                      .-++.....+.-|..+|+.++..-+-..+
T Consensus       376 ~~iA~~L~~~~~aLvFGiNtfvAl~LQti  404 (511)
T TIGR00806       376 FQIASSLSKELCALVFGINTFVATALKTI  404 (511)
T ss_pred             HHHHHHhcccceEEEEecHHHHHHHHHHh
Confidence            76777776666677778777766544433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.91  E-value=0.95  Score=37.36  Aligned_cols=91  Identities=8%  Similarity=-0.045  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHH--HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRLLLS--RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      ...+.+.++.+..|++-.++.+-.-+.  +..++.+.+.+++...          ++.|...+..++.........+...
T Consensus       293 ~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t----------~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  293 ASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT----------GNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             HHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455667788888866666544333  3334444555555554          5667666555555544444444444


Q ss_pred             hhhccccchhcHHHHHHHHHHHH
Q 045196          153 IYCVELFPTNVRNIAVSFLRQAL  175 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~  175 (255)
                      .-++.....+.-+..+|+..+.+
T Consensus       363 ~qIA~~l~~e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGINTFVA  385 (412)
T ss_pred             HHHHHhccccceeeeeeeHHHHH
Confidence            44444444444444455444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.54  E-value=0.26  Score=30.64  Aligned_cols=58  Identities=16%  Similarity=0.061  Sum_probs=43.2

Q ss_pred             eeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh
Q 045196           60 LNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLF  117 (255)
Q Consensus        60 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~  117 (255)
                      ...++.+.+......   ...++.++|.+...++.++.++++.+..+.+.+.+..+.+.+.
T Consensus        17 ~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   17 LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555544433   3446888899999999988888888999999988888888876

Note that many members are hypothetical proteins.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.41  E-value=1.7  Score=36.33  Aligned_cols=35  Identities=14%  Similarity=-0.060  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 045196           72 SVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYV  106 (255)
Q Consensus        72 ~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~  106 (255)
                      .++..++..++.+...|...||..|.+....+.+.
T Consensus        43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~   77 (432)
T PF06963_consen   43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVV   77 (432)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHH
Confidence            34455567777888889999999998876655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.33  E-value=0.86  Score=35.37  Aligned_cols=61  Identities=13%  Similarity=-0.043  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhh
Q 045196           80 EIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVM  151 (255)
Q Consensus        80 ~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (255)
                      .++...+.|-++||.|||+.-+..++...++|+-  -         ....+..+.+...+++...+..++..
T Consensus        85 smLFGtivgSLaDkqGRKracvtycitYiLsCiT--K---------hSpqYkVLmVGR~LGGiaTsLLFSaF  145 (454)
T KOG4332|consen   85 SMLFGTIVGSLADKQGRKRACVTYCITYILSCIT--K---------HSPQYKVLMVGRVLGGIATSLLFSAF  145 (454)
T ss_pred             HHHHHHHHHHHHhhhccccceeeehHHHHHHHHh--h---------cCCceEEEeehhhhhhHHHHHHHHHH
Confidence            3455667788999999999755444444333321  1         12344455666777776655554543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.21  E-value=0.62  Score=37.96  Aligned_cols=159  Identities=10%  Similarity=0.003  Sum_probs=76.6

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCchhHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHH--
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFNLYFSVALNALMEIPAVVIGTVLLSFT--NRRLLLSR--  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~l~~--  102 (255)
                      -++++++-|..+....+....-++....--..+.-+-+.|.+.-... +..+..++..++.++..-|+  |.|++...  
T Consensus       257 ~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~La-l~~v~~~plqI~l~~~~gk~ta~~~pl~~~lk  335 (510)
T KOG3574|consen  257 LLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELA-LIAVPLVPLQIALPLYIGKWTAGPRPLNVFLK  335 (510)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHhe-eeeeehhhHHHhhhhhheeecCCCCcchHHHH
Confidence            45667776665544444333333333333333333334555433332 22255566666666666655  33332211  


Q ss_pred             ---HHHHHHHHHHHHHHhcccCCC-CCC-CCCchHH-HHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH
Q 045196          103 ---SAYVAGSASILCTLFSNNNNN-KGK-GGGSWPQ-LIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM  176 (255)
Q Consensus       103 ---~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  176 (255)
                         .=++.+.+..++.+...+... +.. ...+..+ +..-.+...+....+....+..+.+.++..-|+-+.+.++..+
T Consensus       336 a~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsn  415 (510)
T KOG3574|consen  336 AVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSN  415 (510)
T ss_pred             hhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHH
Confidence               011111122222222211111 111 1111111 1112233334444556677888999999999999999999999


Q ss_pred             HhhhhhhhHH
Q 045196          177 LGASVSPLLV  186 (255)
Q Consensus       177 ~g~~~~p~~~  186 (255)
                      +|+-.-..+.
T Consensus       416 LGg~wp~tv~  425 (510)
T KOG3574|consen  416 LGGNWPGTVA  425 (510)
T ss_pred             hcCCcHHHHH
Confidence            9986444433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.21  E-value=1  Score=36.91  Aligned_cols=32  Identities=22%  Similarity=0.185  Sum_probs=17.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhccccchhc
Q 045196          131 WPQLIIEGVGFMAASTAFDVMYIYCVELFPTNV  163 (255)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  163 (255)
                      +..++...+.+.+.+......+...++ +|.+.
T Consensus       118 ~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y  149 (406)
T KOG1479|consen  118 LVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY  149 (406)
T ss_pred             HHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH
Confidence            344444444455555555666666665 55544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.78  E-value=0.0043  Score=47.84  Aligned_cols=99  Identities=12%  Similarity=0.028  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSF-TNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYI  153 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (255)
                      +.+.-+++-++++|++.|| +|-|...++-+....+..++.+.-.       ..+..|.+....++.+.+.-.....-..
T Consensus        87 vYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg-------i~~aFw~M~~GRF~FGIGgESlAVaQN~  159 (459)
T KOG4686|consen   87 VYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG-------ISHAFWTMLAGRFLFGIGGESLAVAQNK  159 (459)
T ss_pred             eccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHhhheeeccCchhhhhhhcc
Confidence            3455677788999999997 5766554444444444444333211       1146778888888877655544455567


Q ss_pred             hhccccchhcHHHHHHHHHHHHHHhhh
Q 045196          154 YCVELFPTNVRNIAVSFLRQALMLGAS  180 (255)
Q Consensus       154 ~~~e~~p~~~r~~~~~~~~~~~~~g~~  180 (255)
                      ++.-.|..++-+.++|+.....++|+.
T Consensus       160 yav~wFKGKELn~vfGlqlSvAR~Gst  186 (459)
T KOG4686|consen  160 YAVYWFKGKELNFVFGLQLSVARLGST  186 (459)
T ss_pred             eeEEEecCccccchhhHHHHHHHhhce
Confidence            888889999999999999999999985

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.75  E-value=2.8  Score=35.67  Aligned_cols=86  Identities=10%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeeccc-----CchhH--HHHHHHHHHHHHHHHHHHHHHhhcchh
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNL-----NFNLY--FSVALNALMEIPAVVIGTVLLSFTNRR   97 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~grr   97 (255)
                      ..+++.++++|..+...++.+......++.-+.........     ..+..  ......++..++..++++.+.+|+|-+
T Consensus       270 ~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  270 KESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            35677788888755444444333344444433221111111     11111  112334555666668889999999988


Q ss_pred             HHHHHHHHHHHHH
Q 045196           98 LLLSRSAYVAGSA  110 (255)
Q Consensus        98 ~~l~~~~~~~~~~  110 (255)
                      ....+.-+++.+.
T Consensus       350 ~~AlitPiv~lit  362 (491)
T PF03219_consen  350 TAALITPIVILIT  362 (491)
T ss_pred             HHHHHhHHHHHHH
Confidence            8777654444433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.72  E-value=0.57  Score=38.38  Aligned_cols=57  Identities=11%  Similarity=0.096  Sum_probs=40.4

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhH
Q 045196          129 GSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLL  185 (255)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~  185 (255)
                      +.+..+....+.++..|-..++...+.++-.|++++-.+-.+...+-..|-+.|..+
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            445666666777777777778889999999999888776666666555555555443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=93.68  E-value=0.078  Score=44.75  Aligned_cols=63  Identities=17%  Similarity=0.143  Sum_probs=44.2

Q ss_pred             eeeeecccCchhHHHHHHHH---HHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHHHHHHhccc
Q 045196           58 IQLNVGNLNFNLYFSVALNA---LMEIPAVVIGTVLLSFTNRRLLLSRSA-YVAGSASILCTLFSNN  120 (255)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~grr~~l~~~~-~~~~~~~~~~~~~~~~  120 (255)
                      ++.+..++|.++.....+++   +..+++.+++|+++||+.+|+.++++. +....+.+++.+++..
T Consensus        34 l~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~P~  100 (618)
T KOG3762|consen   34 LAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVPPV  100 (618)
T ss_pred             HHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeeccCc
Confidence            34566778888888777765   478889999999999998766555554 4444555555555443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=93.45  E-value=1.7  Score=35.08  Aligned_cols=94  Identities=10%  Similarity=-0.014  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRL--LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMY  152 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
                      +..+.+.++.++.|++--++.|..  ++.++....+.+.+.+...          .+.|...+..++.........++..
T Consensus       279 v~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t----------~~Iw~~Ya~yvlfr~~y~l~itiA~  348 (433)
T KOG3810|consen  279 VSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT----------QHIWVCYAGYVLFRVIYQLTITIAT  348 (433)
T ss_pred             HHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc----------cceehhhhhHHHHHhhHhhhhhHHH
Confidence            344566678888888876666553  3344444444444444333          4566555555555444444445555


Q ss_pred             hhhccccchhcHHHHHHHHHHHHHHh
Q 045196          153 IYCVELFPTNVRNIAVSFLRQALMLG  178 (255)
Q Consensus       153 ~~~~e~~p~~~r~~~~~~~~~~~~~g  178 (255)
                      .-+++....+.-|..+|+..++.-+-
T Consensus       349 ~~iA~nL~~e~~gLvFGiNTFvAl~l  374 (433)
T KOG3810|consen  349 FQIARNLSSELFGLVFGINTFVALIL  374 (433)
T ss_pred             HHHHHhhhhhhheeeeehHHHHHHHH
Confidence            56666666666677777776655433

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.19  E-value=0.03  Score=44.46  Aligned_cols=112  Identities=12%  Similarity=-0.073  Sum_probs=3.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCC---CCCCCCchHHHHHHHHHHHHHhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNN---KGKGGGSWPQLIIEGVGFMAASTAFDV  150 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (255)
                      .+.+++-++|..+.++..-+..+++.+.+..+.-.+...++........+   ...-.+.+..++..++.++..|...+.
T Consensus       189 l~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~tl  268 (309)
T PF01733_consen  189 LLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLSTL  268 (309)
T ss_dssp             ------------------------------------------------------------------------------HH
T ss_pred             HHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhhhc
Confidence            34566777888877764322113333333333232222222221000000   001123445556666777777777788


Q ss_pred             hhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhH
Q 045196          151 MYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLL  185 (255)
Q Consensus       151 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~  185 (255)
                      ...+.++..++++|..+..+...+-.+|-.+|..+
T Consensus       269 ~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  269 AMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             HH---------------------------------
T ss_pred             eeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999998888877777666666665555443

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.38  E-value=1.5  Score=37.01  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=18.0

Q ss_pred             HHHHHHHh-----hcchhHHHHHH-HHHHHHHHHHHH
Q 045196           85 VIGTVLLS-----FTNRRLLLSRS-AYVAGSASILCT  115 (255)
Q Consensus        85 ~~~g~l~d-----r~grr~~l~~~-~~~~~~~~~~~~  115 (255)
                      +++..++|     |+||||..++- -.++++.++.+.
T Consensus        53 lLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~   89 (544)
T PF13000_consen   53 LLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLS   89 (544)
T ss_pred             HhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHH
Confidence            56666666     78999876553 334444444433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=92.36  E-value=6.7  Score=34.24  Aligned_cols=133  Identities=11%  Similarity=0.012  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhcccCCCC------------CCCCCch---HHHHHHHHHHH
Q 045196           79 MEIPAVVIGTVLLSFT-NRRLLLSRSAYVAGSASILCTLFSNNNNNK------------GKGGGSW---PQLIIEGVGFM  142 (255)
Q Consensus        79 ~~~~~~~~~g~l~dr~-grr~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~---~~~~~~~~~~~  142 (255)
                      ......+++++++|.+ ||-+.+.++.++..+...++..........            .+..+..   .+.....+...
T Consensus        85 ~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~  164 (571)
T KOG1237|consen   85 TQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIAL  164 (571)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHhee
Confidence            3445678899999975 999999888887777665544432211100            0111111   12222222333


Q ss_pred             HHhhhhhhhhhhhccccch----hcHH--HHHHHHHHHHHHhhhhhhhHHHhh--hcCCCchhHHHHHHHHHHHHHH
Q 045196          143 AASTAFDVMYIYCVELFPT----NVRN--IAVSFLRQALMLGASVSPLLVVVG--RMSPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       143 ~~~~~~~~~~~~~~e~~p~----~~r~--~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  211 (255)
                      +.++.-+...++-+|-++.    +.+.  .-+.+.++..++|..++..+..+.  ..+|...|.+..++..++.++.
T Consensus       165 G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  165 GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence            4556667788888888882    2222  445555666667777666555433  3566667777777666665543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.28  E-value=4.7  Score=33.89  Aligned_cols=83  Identities=10%  Similarity=-0.005  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 045196           78 LMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVE  157 (255)
Q Consensus        78 ~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  157 (255)
                      +..++..+....+..|+..|.-+..+..+..+..++.......  +.+.....+..++..++.+++.+...+..+++.+ 
T Consensus        56 v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~--~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~-  132 (437)
T TIGR00939        56 LPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKV--QTSETGFFVTTMASVVIINSGMALLQGSLFGLAG-  132 (437)
T ss_pred             HHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeee--cCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc-
Confidence            3444455555566666665333344433322222222221110  1111112334444455556566666666677766 


Q ss_pred             ccchhc
Q 045196          158 LFPTNV  163 (255)
Q Consensus       158 ~~p~~~  163 (255)
                      .+|++.
T Consensus       133 ~fp~~~  138 (437)
T TIGR00939       133 VFPSTY  138 (437)
T ss_pred             cCCHHH
Confidence            466543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=91.26  E-value=0.36  Score=40.59  Aligned_cols=57  Identities=7%  Similarity=0.141  Sum_probs=40.5

Q ss_pred             hhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHH--hhhcCCCchhHHHHHHHH
Q 045196          149 DVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVV--VGRMSPSLSFLVFGALSI  205 (255)
Q Consensus       149 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~--~~~~~~~~~~~~~~~~~~  205 (255)
                      ....++-+|+..++.+++..++....+.++..++|++..  ....+....+.+.+...+
T Consensus       407 ~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l  465 (488)
T KOG2325|consen  407 TALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLL  465 (488)
T ss_pred             chHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHH
Confidence            456678889998899999999999888888888888765  233445444444443333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=89.92  E-value=8  Score=30.28  Aligned_cols=168  Identities=16%  Similarity=0.078  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHhhheeeeecccCchh-----HHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHH
Q 045196           41 LIMVMTAGFGVGFVYYGIQLNVGNLNFNL-----YFSVALNALMEIPAVVIGTVLLSFTNR--RLLLSRSAYVAGSASIL  113 (255)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~l~~~~~~~~~~~~~  113 (255)
                      .++..+-..+-...|.....|.|.+..+.     .....-..+..++|+-+..++..|-..  ...+.+...+..+...+
T Consensus       251 ~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~L  330 (454)
T KOG4332|consen  251 ALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLL  330 (454)
T ss_pred             HHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence            33333333444555555557777765332     122122223455566555555544332  23344444444433333


Q ss_pred             HHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhh--hc
Q 045196          114 CTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVG--RM  191 (255)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~  191 (255)
                      ......+.   +...+....++.+++.-.+.+..+|.+.-+-++..|.+.|++.+-+...--++...++-+-....  ..
T Consensus       331 pilt~~vs---P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~  407 (454)
T KOG4332|consen  331 PILTSSVS---PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPT  407 (454)
T ss_pred             HHHHhccC---CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCcc
Confidence            32222111   11123333455555666678888999999999999999998876555433232222221111011  11


Q ss_pred             CCCchhHHHHHHHHHHHHHH
Q 045196          192 SPSLSFLVFGALSIFSGVLS  211 (255)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~  211 (255)
                      +....|-++.+..+++.+..
T Consensus       408 ~tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  408 TTRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             ccchhhhhhHHHHHHHHHHH
Confidence            23345666666666665543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=89.52  E-value=12  Score=31.80  Aligned_cols=85  Identities=6%  Similarity=0.009  Sum_probs=46.6

Q ss_pred             ccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecccCch-----hH--HHHHHHHHHHHHHHHHHHHHHhhcchh
Q 045196           25 DNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGNLNFN-----LY--FSVALNALMEIPAVVIGTVLLSFTNRR   97 (255)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~g~l~dr~grr   97 (255)
                      ..+++.++++|..+......++.....++.++...........+     ..  ......++..++..++.+++.+|+|-+
T Consensus       254 ~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       254 MESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            35677788998755544444444444455543322111111111     11  112334455555666679999999998


Q ss_pred             HHHHHHHHHHHH
Q 045196           98 LLLSRSAYVAGS  109 (255)
Q Consensus        98 ~~l~~~~~~~~~  109 (255)
                      ...++.-+++.+
T Consensus       334 ~~a~i~Pii~li  345 (472)
T TIGR00769       334 TAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHH
Confidence            877766655544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=88.16  E-value=3.1  Score=29.09  Aligned_cols=37  Identities=5%  Similarity=-0.020  Sum_probs=28.2

Q ss_pred             HhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhh
Q 045196          144 ASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGAS  180 (255)
Q Consensus       144 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  180 (255)
                      ..+..++.|.+++-...++..|+..|+-.+--+++-+
T Consensus       108 g~gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~  144 (153)
T PF11947_consen  108 GLGLLGISYGILSASWDPEREGSLLGWEEFKRNWGRM  144 (153)
T ss_pred             HHHHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence            3445578888888889888889999988777766544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=86.91  E-value=13  Score=32.21  Aligned_cols=23  Identities=22%  Similarity=0.072  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcch
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNR   96 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~gr   96 (255)
                      ++..+.+++++..++++...+|.
T Consensus       304 ~~y~~~~~iaGy~S~~~yk~~~g  326 (521)
T PF02990_consen  304 ILYALTSFIAGYVSARLYKSFGG  326 (521)
T ss_pred             HHHHHHhhHHHHHHHHHHHHcCC
Confidence            33445556666677777666653

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=86.66  E-value=2  Score=34.62  Aligned_cols=123  Identities=18%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcH
Q 045196           85 VIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVR  164 (255)
Q Consensus        85 ~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  164 (255)
                      +..-.+.|-..-|++++.-.+...+....+.+.          .+.+.+=++-+..+.. ...-...++++=+..+++.+
T Consensus        60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g----------~sV~~mQvlE~FyG~~-tAaEIAYysYIYs~Vd~~~Y  128 (433)
T KOG3810|consen   60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG----------PSVKAMQVLEFFYGPA-TAAEIAYYSYIYSKVDPEMY  128 (433)
T ss_pred             HHHHHHhhhhhcceeeeeeccchhHHHHHHHhc----------CCchheeeehhhcChH-HHHHHhhhheeeeecCHHHH
Confidence            444457788888888877666555555555554          4555443333333332 23335677788888888888


Q ss_pred             HHHHHHHHHHHHH----hhhhhhhHHHhhhcCCCchhHHHHHHHHHHHHHHHHhccCC
Q 045196          165 NIAVSFLRQALML----GASVSPLLVVVGRMSPSLSFLVFGALSIFSGVLSLWLPETK  218 (255)
Q Consensus       165 ~~~~~~~~~~~~~----g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  218 (255)
                      .++.|.+....-.    |+.++.++.+....+....-.+..+...++.++.+++|..+
T Consensus       129 qrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  129 KRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVK  186 (433)
T ss_pred             HHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence            8888887665543    44455555543322222222233333334445556776544

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.76  E-value=3.4  Score=26.78  Aligned_cols=30  Identities=13%  Similarity=-0.233  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHhhc-chhHHHHHHHHHHH
Q 045196           79 MEIPAVVIGTVLLSFT-NRRLLLSRSAYVAG  108 (255)
Q Consensus        79 ~~~~~~~~~g~l~dr~-grr~~l~~~~~~~~  108 (255)
                      ..++.....||+.||+ |-+++.++.+++.+
T Consensus        54 sGilVGa~iG~llD~~agTsPwglIv~lllG   84 (116)
T COG5336          54 SGILVGAGIGWLLDKFAGTSPWGLIVFLLLG   84 (116)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3444556778999986 67776655554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.83
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.74
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.7
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.67
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.66
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.64
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.64
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.64
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.57
2xut_A	524	Proton/peptide symporter family protein; transport	99.52
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.42
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.29
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.07
2xut_A	524	Proton/peptide symporter family protein; transport	98.73

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.83  E-value=5.4e-20  Score=152.94  Aligned_cols=156  Identities=15%  Similarity=0.153  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH-HHHHHHhhhhh
Q 045196           71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG-VGFMAASTAFD  149 (255)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  149 (255)
                      ....+.++..+++.+++++++||+|||+.++.+...+.++.+.+.....      .....+..++..+ ....+..+..+
T Consensus       316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4gc0_A          316 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------TQAPGIVALLSMLFYVAAFAMSWGP  389 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHTTTTH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh------cccchHHHHHHHHHHHHHHHhHHHH
Confidence            3345566788889999999999999999999988888877766654421      1122232222222 22333444567


Q ss_pred             hhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--------hhcCCCchhHHHHHHHHHHHHHH-HHhccCCCC
Q 045196          150 VMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--------GRMSPSLSFLVFGALSIFSGVLS-LWLPETKNA  220 (255)
Q Consensus       150 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~  220 (255)
                      +.+.+.+|++|++.|+++.|+.+..++++++++|.+...        ...+....|++++++++++.++. +++||||++
T Consensus       390 ~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          390 VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            889999999999999999999999999999888776542        22345667888888888887765 678999999


Q ss_pred             CchHhHHhhhhh
Q 045196          221 PLYETLKQQGEE  232 (255)
Q Consensus       221 ~~~~~~~~~~~~  232 (255)
                      +++|.++-.+++
T Consensus       470 tLeei~~~f~~~  481 (491)
T 4gc0_A          470 TLEELEALWEPE  481 (491)
T ss_dssp             CHHHHGGGTC--
T ss_pred             CHHHHHHHhCCC
Confidence            998876554433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.74  E-value=2.3e-16  Score=129.49  Aligned_cols=139  Identities=12%  Similarity=0.089  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCCCchHHHHHHHHHHHHHhh
Q 045196           71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTL----FSNNNNNKGKGGGSWPQLIIEGVGFMAAST  146 (255)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (255)
                      .......++..++.+++|+++||+|||++++++.++.+++.++..+    .          .+.+.+++..++.+++.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~G~~~~~  135 (451)
T 1pw4_A           66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT----------SSIAVMFVLLFLCGWFQGM  135 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH----------SSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc----------ccHHHHHHHHHHHHHHhhh
Confidence            3344455678889999999999999999999999999998888877    5          4677777888888888888


Q ss_pred             hhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcC-CCchhHHHHHHHHHHHHHH-HHhccCCC
Q 045196          147 AFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMS-PSLSFLVFGALSIFSGVLS-LWLPETKN  219 (255)
Q Consensus       147 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~~~e~~~  219 (255)
                      ..+...+++.|.+|++.|+++.++.+....+|.+++|.+.+.  ...+ |+..|++.++++++..++. +++||+..
T Consensus       136 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          136 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             ccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            889999999999999999999999999999999999998873  4456 8888888888777665554 56676543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.70  E-value=4.6e-16  Score=127.76  Aligned_cols=180  Identities=15%  Similarity=-0.008  Sum_probs=122.9

Q ss_pred             hHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHH---HHHHHHHHHHHHHHHHHHHhhc--chhHHHH
Q 045196           28 NESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFS---VALNALMEIPAVVIGTVLLSFT--NRRLLLS  101 (255)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~--grr~~l~  101 (255)
                      .+++++++.++...+..++..+.........+.++.+ ++.+....   ....+++.+++.++.++++||+  |||+.+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  324 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  324 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence            4667788776655554444444433333333444444 66665433   3344567888999999999999  9999888


Q ss_pred             HHHHHHH-HHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHH-hh
Q 045196          102 RSAYVAG-SASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML-GA  179 (255)
Q Consensus       102 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~  179 (255)
                      ++..+.. ++.+++.+.        +..+.+...+..++.+++.+...+....+..|.+|++.|+++.|+.+....+ |+
T Consensus       325 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~  396 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMN--------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  396 (451)
T ss_dssp             HHHHHHHHHHHHHTTSC--------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh--------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence            7776665 333333322        1124455555556666666677778889999999999999999999999999 99


Q ss_pred             hhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhc
Q 045196          180 SVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLP  215 (255)
Q Consensus       180 ~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
                      .++|.+.+.  ...++...+++.+++.+++.++.++++
T Consensus       397 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999884  334566677777777777766655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.67  E-value=2.7e-15  Score=122.79  Aligned_cols=120  Identities=6%  Similarity=-0.080  Sum_probs=99.9

Q ss_pred             eeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH---HHhcccCCCCCCCCCchH
Q 045196           59 QLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILC---TLFSNNNNNKGKGGGSWP  132 (255)
Q Consensus        59 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  132 (255)
                      +.+.+.++.+......   ...++..++.++.|+++||+|||+.++++.++.++..++.   ...          .+.+.
T Consensus        50 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~  119 (438)
T 3o7q_A           50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI----------MNYTL  119 (438)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT----------TCHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc----------ccHHH
Confidence            3455566766544433   3445777899999999999999999999999998888877   444          57778


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196          133 QLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV  188 (255)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~  188 (255)
                      +++..++.+++.+...+...++++|.+|++.|+.+.++.+....+|.+++|.+.+.
T Consensus       120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A          120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888889999999999999999999999999999999999998874

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.66  E-value=3.5e-15  Score=121.65  Aligned_cols=137  Identities=9%  Similarity=0.086  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhh
Q 045196           75 LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY  154 (255)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (255)
                      +..++.+++.++.++++||+|||+++..+..+.++..++..+.          .+.+..++..++.+++.....+..+.+
T Consensus       267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------TSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC----------CSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677889999999999999999888877776655444333          234444444444444444455667889


Q ss_pred             hccccchhcHHHHHHHH-HHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH-HhccCCCCC
Q 045196          155 CVELFPTNVRNIAVSFL-RQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL-WLPETKNAP  221 (255)
Q Consensus       155 ~~e~~p~~~r~~~~~~~-~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~  221 (255)
                      ++|.+|++.|+++.++. +...++|++++|.+.+.  ...++...|.+.+++.+++.++.+ ..||+++.+
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            99999999999999995 77778999999999884  223444567777777777766544 346655443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.64  E-value=1.9e-14  Score=117.77  Aligned_cols=171  Identities=11%  Similarity=0.039  Sum_probs=114.1

Q ss_pred             CccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeee-ecc-cCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhH
Q 045196           24 SDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN-VGN-LNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRL   98 (255)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~   98 (255)
                      .+.++++++++|..+...+..++............+.+ ..+ ++.+....   ..+..++.+++.++.++++||+|||+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  326 (438)
T 3o7q_A          247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_dssp             HHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            34578889999886665555444444333322222333 333 36655433   33345677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHh
Q 045196           99 LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLG  178 (255)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  178 (255)
                      .+.++.++.++..+++.+.          .+.+. +...++.+++.+...+..+++..|.+|++ |+++.++.. .+.+|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g  393 (438)
T 3o7q_A          327 VLAAYALIAMALCLISAFA----------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG  393 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHc----------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence            9999888887776666554          23333 33335555667777789999999999977 888888877 66789


Q ss_pred             hhhhhhHHHh--hhcC-CCchhHHHHHHHHHH
Q 045196          179 ASVSPLLVVV--GRMS-PSLSFLVFGALSIFS  207 (255)
Q Consensus       179 ~~~~p~~~~~--~~~~-~~~~~~~~~~~~~~~  207 (255)
                      ++++|.+.+.  ...+ +...+.+.+++.++.
T Consensus       394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            9999999884  3344 566666554444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.64  E-value=4.3e-15  Score=123.42  Aligned_cols=143  Identities=17%  Similarity=0.043  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCC--------CCCCchHHHHHHHHHHHHHhhh
Q 045196           76 NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKG--------KGGGSWPQLIIEGVGFMAASTA  147 (255)
Q Consensus        76 ~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  147 (255)
                      ..++.++|.+++|+++||+|||+.++++.++..++.++.++.........        -..+.+.+++.+++.+++.++.
T Consensus        64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~  143 (491)
T 4gc0_A           64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999888887764310000000        0135667888999999999999


Q ss_pred             hhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhhh----------cCCCchhHHHHHHHHHHHHHHHHhccC
Q 045196          148 FDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGR----------MSPSLSFLVFGALSIFSGVLSLWLPET  217 (255)
Q Consensus       148 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~e~  217 (255)
                      .+....+++|..|++.|+...++.+....+|.++++.+.....          .+++..+.+.....++..+..+++||+
T Consensus       144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS  223 (491)
T 4gc0_A          144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES  223 (491)
T ss_dssp             HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred             HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence            9999999999999999999999998888888777766654211          112222333333444444444567886


Q ss_pred             C
Q 045196          218 K  218 (255)
Q Consensus       218 ~  218 (255)
                      .
T Consensus       224 p  224 (491)
T 4gc0_A          224 P  224 (491)
T ss_dssp             H
T ss_pred             h
Confidence            3

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.64  E-value=1.3e-14  Score=120.58  Aligned_cols=139  Identities=14%  Similarity=0.067  Sum_probs=110.0

Q ss_pred             cCchhHHHH---HHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196           65 LNFNLYFSV---ALNALMEIPAVVIGTVLLSF-TNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG  140 (255)
Q Consensus        65 ~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
                      ++.+.....   ....++..++.+++|+++|| +|||+++.++.++.+++.++..+.          ++.+..++..++.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~  118 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP----------FGASALFGSIILI  118 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC----------CSTTHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHH
Confidence            666654443   33456778899999999999 899999999999888888777665          4667777788888


Q ss_pred             HHHHhhhhhhhhhhhccccchhc--HHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHH
Q 045196          141 FMAASTAFDVMYIYCVELFPTNV--RNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLW  213 (255)
Q Consensus       141 ~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  213 (255)
                      +++.+...+...+++.|.+|++.  |+.+.++.+....+|..++|.+.+.  ...+++..|++.++..+++.++.++
T Consensus       119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888999999999999988  7778888889999999999999884  3356777787777666666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.57  E-value=5.3e-15  Score=118.73  Aligned_cols=153  Identities=13%  Similarity=0.054  Sum_probs=118.6

Q ss_pred             eeeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHH
Q 045196           58 IQLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQL  134 (255)
Q Consensus        58 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (255)
                      .+.+.++++.+......   ...++..++.++.|+++||+|||+.+.++..+.++..++..+.          ++.+..+
T Consensus        23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~   92 (375)
T 2gfp_A           23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----------SSLTVLI   92 (375)
T ss_dssp             HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----------HHHHHHH
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------ccHHHHH
Confidence            34456667776554433   3446777889999999999999999999999988888887776          3667777


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHH-H
Q 045196          135 IIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVL-S  211 (255)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~  211 (255)
                      +..++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.  ...+++..+++.+++.++..+. .
T Consensus        93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  172 (375)
T 2gfp_A           93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMA  172 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888889999999999999999999999999999999999999884  2235666777777766665553 3


Q ss_pred             HHhccCCCC
Q 045196          212 LWLPETKNA  220 (255)
Q Consensus       212 ~~~~e~~~~  220 (255)
                      +++||++++
T Consensus       173 ~~~~~~~~~  181 (375)
T 2gfp_A          173 RWMPETRPV  181 (375)
T ss_dssp             CSSCCCSTT
T ss_pred             HHCcccCCC
Confidence            456776443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.52  E-value=1.3e-13  Score=115.50  Aligned_cols=129  Identities=8%  Similarity=0.016  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-CchHHHHHHHHHHHHHhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFT-NRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGG-GSWPQLIIEGVGFMAASTAFDVM  151 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~-grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  151 (255)
                      ....++..++.+++|+++||+ |||+++.++.++.++..++..+.          . +.+..++..++.+++.+...+..
T Consensus        61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF----------EHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----------SSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHhccccchhH
Confidence            344567788899999999999 99999999998888888777765          3 66677777788888888888999


Q ss_pred             hhhhccccchhcHHHHHHH---HHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196          152 YIYCVELFPTNVRNIAVSF---LRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL  212 (255)
Q Consensus       152 ~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  212 (255)
                      .++++|.+|++.|+++.+.   .+....+|.+++|.+.+.  ...++...|++.+++.+++.++.+
T Consensus       131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999766665   888888999999988774  234566677777766665554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.42  E-value=7.8e-13  Score=109.83  Aligned_cols=144  Identities=15%  Similarity=0.078  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhh
Q 045196           73 VALNALMEIPAVVIGTVLLSFTNRRLLLS-----RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTA  147 (255)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~grr~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (255)
                      .....+..+++.++.++++||+|||+...     ++..+++++.+++........ .....+.+..+...++.+++.+..
T Consensus       325 ~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~  403 (491)
T 4aps_A          325 QSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG-TSGKVSPLWLVGSWALVILGEMLI  403 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC-CCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred             hccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCccHHHHHHHHHHHHHHHHHH
Confidence            34455677778899999999999986544     555555555544443211110 011234455555666666666777


Q ss_pred             hhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hhcCCCchhHHHHHHHHHHHHHHHHh-ccC
Q 045196          148 FDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GRMSPSLSFLVFGALSIFSGVLSLWL-PET  217 (255)
Q Consensus       148 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~  217 (255)
                      .+..+.++.|.+|++.|+++.|+.+....+|++++|.+.+. .+.+....+.+.+++++++.++.+++ ++.
T Consensus       404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999884 44455667777777777766655444 443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.29  E-value=1.5e-12  Score=104.36  Aligned_cols=154  Identities=14%  Similarity=0.097  Sum_probs=95.9

Q ss_pred             CccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHH
Q 045196           24 SDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLL   99 (255)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~   99 (255)
                      .+.++++++++|..+...+..++..+.........+.+..+ .+.+.....   ....++.+++.++.+++.||+||+. 
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~-  266 (375)
T 2gfp_A          188 LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-  266 (375)
T ss_dssp             TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH-
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34567788888876655555444444444444444444444 555544333   3344567778888888888888732 


Q ss_pred             HHHHHHH-HHHHHH--HHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH
Q 045196          100 LSRSAYV-AGSASI--LCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM  176 (255)
Q Consensus       100 l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  176 (255)
                       ..+... ......  ......        ..+.+..++..++.+++.+...+....+..|.+| +.|+++.|+.+....
T Consensus       267 -~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~  336 (375)
T 2gfp_A          267 -WQSVICCLLAGLLMWIPDWFG--------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQN  336 (375)
T ss_dssp             -HHHHHHHHHTSSSSSHHHHHH--------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHhhhc--------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHH
Confidence             222222 111111  111110        0133444455566666777778899999999999 789999999999999


Q ss_pred             HhhhhhhhHHHh
Q 045196          177 LGASVSPLLVVV  188 (255)
Q Consensus       177 ~g~~~~p~~~~~  188 (255)
                      +|+.++|.+.+.
T Consensus       337 ~g~~~~~~~~g~  348 (375)
T 2gfp_A          337 IGSGVLASLSAM  348 (375)
T ss_dssp             HHHHCCSTTCTH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988774

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.07  E-value=5.8e-12  Score=102.56  Aligned_cols=176  Identities=10%  Similarity=-0.091  Sum_probs=89.4

Q ss_pred             hhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhH---HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 045196           31 LWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLY---FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYV  106 (255)
Q Consensus        31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~  106 (255)
                      .+|+|+++......+...+........++.++. .++.+..   .......++..++.+++|+++||+|||++++++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~   82 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG   82 (417)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            577877655444433333333332223344443 3565443   333445567888999999999999999999887776


Q ss_pred             HHHHHHHH---HHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccch--hcHHHHHHHHHHHHHHhhhh
Q 045196          107 AGSASILC---TLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPT--NVRNIAVSFLRQALMLGASV  181 (255)
Q Consensus       107 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~  181 (255)
                      .++.....   .+....      .....   ....+.+...+...+.......+..+.  +.|+.+.+.....+.+|..+
T Consensus        83 ~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~  153 (417)
T 2cfq_A           83 MLVMFAPFFIFIFGPLL------QYNIL---VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL  153 (417)
T ss_dssp             TTSCHHHHHHHTHHHHH------HTTCC---HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence            54422111   111000      00111   111111111111112222223333332  34566667777777788888


Q ss_pred             hhhHHHh-hhcCCCchhHHHHHHHHHHHHHHHHhc
Q 045196          182 SPLLVVV-GRMSPSLSFLVFGALSIFSGVLSLWLP  215 (255)
Q Consensus       182 ~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
                      +|.+.++ ...+++..|++.++..++..+..++.+
T Consensus       154 ~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~  188 (417)
T 2cfq_A          154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK  188 (417)
T ss_dssp             HHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcC
Confidence            8888773 334556666655554443333333333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.73  E-value=3e-09  Score=89.00  Aligned_cols=122  Identities=10%  Similarity=0.108  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHH
Q 045196           98 LLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML  177 (255)
Q Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  177 (255)
                      +.+.++.++.+++.+++.+..... +.....+.+..++..++.+++.+...+..+.++.|..|++.|++++|+.+....+
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  452 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMM-DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTV  452 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTT-TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHH
Confidence            345556655555554443321000 0001134555555666667777777789999999999999999999999999999


Q ss_pred             hhhhhhhHHHhhhcC----C---------CchhHHHHHHHHHHHHHHH-HhccCCCC
Q 045196          178 GASVSPLLVVVGRMS----P---------SLSFLVFGALSIFSGVLSL-WLPETKNA  220 (255)
Q Consensus       178 g~~~~p~~~~~~~~~----~---------~~~~~~~~~~~~~~~~~~~-~~~e~~~~  220 (255)
                      |++++|.+.+.....    +         ...|++.+++++++.++.+ +.++.+++
T Consensus       453 g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (524)
T 2xut_A          453 GNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQ  509 (524)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999998843210    0         1125556666666655543 33554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.73
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.64
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.62
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.34

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.8e-16  Score=127.82  Aligned_cols=149  Identities=11%  Similarity=0.056  Sum_probs=112.8

Q ss_pred             ecccCchh---HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH
Q 045196           62 VGNLNFNL---YFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG  138 (255)
Q Consensus        62 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (255)
                      +.+.|.+.   ........++..++.+++|+++||+|||+++.++.++.+++.++..+....      ..+.+..++..+
T Consensus        51 ~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  124 (447)
T d1pw4a_          51 LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA------TSSIAVMFVLLF  124 (447)
T ss_dssp             TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH------HSSSSHHHHHHH
T ss_pred             HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh------hhhHHHHHHHHH
Confidence            34556543   333444556778899999999999999999999999888887776654211      135667777788


Q ss_pred             HHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh---hhcCCCchhHHHHHHHHHHHHHHH-Hh
Q 045196          139 VGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV---GRMSPSLSFLVFGALSIFSGVLSL-WL  214 (255)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~  214 (255)
                      +.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.   ...+|+..+++.+.+.++..++.+ ++
T Consensus       125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence            88888888889999999999999999999999999999999999887763   223567777777777666655544 44


Q ss_pred             cc
Q 045196          215 PE  216 (255)
Q Consensus       215 ~e  216 (255)
                      ++
T Consensus       205 ~~  206 (447)
T d1pw4a_         205 RD  206 (447)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8.3e-15  Score=116.09  Aligned_cols=137  Identities=9%  Similarity=0.084  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhh
Q 045196           74 ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYI  153 (255)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (255)
                      ....++..++..+.+++.||.|||+.+.++..+.++..+.+.+.          .+.+..++..++.+++.+...+....
T Consensus       266 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~~  335 (417)
T d1pv7a_         266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------TSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc----------cccchhhHHHHHHHHHHHHHHHHHHH
Confidence            33445677788999999999999999999998888877777665          46666677777777777888899999


Q ss_pred             hhccccchhcHHHHHHHHH-HHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH-HhccCCCC
Q 045196          154 YCVELFPTNVRNIAVSFLR-QALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL-WLPETKNA  220 (255)
Q Consensus       154 ~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~  220 (255)
                      ++.|.+|++.|+++.++.. ....+|.+++|.+.++  ...++...+++.+++.++..++.+ .++++++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            9999999999999999865 4556899999998874  445666778888877777666554 44544443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.2e-14  Score=117.05  Aligned_cols=183  Identities=15%  Similarity=0.023  Sum_probs=111.0

Q ss_pred             chHHhhcChhHHHHHHHHHHHHHHHH-HHhhheeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196           27 KNESLWGTKWAAKRLIMVMTAGFGVG-FVYYGIQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSR  102 (255)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  102 (255)
                      ..+..++++..+......++...... ...+...+..+..+.+....   ..+..+..+++.++.|+++||++||+....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  320 (447)
T d1pw4a_         241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  320 (447)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence            35566777765444433333333332 22222223333445544333   344556778899999999999998765444


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHh-hhh
Q 045196          103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLG-ASV  181 (255)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g-~~~  181 (255)
                      ......+...........     ...+.+...+..++.+++..+..+..+.+..|.+|++.|+++.|+.+..++++ .++
T Consensus       321 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~  395 (447)
T d1pw4a_         321 GVFFMTLVTIATIVYWMN-----PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  395 (447)
T ss_dssp             HHHHHHHHHHHHHHTTSC-----CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            433333332222222100     12344555555566666666777888999999999999999999999988875 566


Q ss_pred             hhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196          182 SPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWL  214 (255)
Q Consensus       182 ~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
                      +|.+.+.  ...++...+++.+++++++.++...+
T Consensus       396 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            7888774  34456666777777666666555433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=3.1e-12  Score=100.95  Aligned_cols=180  Identities=10%  Similarity=-0.087  Sum_probs=98.0

Q ss_pred             HhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhHHHHHHH---HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 045196           30 SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLYFSVALN---ALMEIPAVVIGTVLLSFTNRRLLLSRSAY  105 (255)
Q Consensus        30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr~grr~~l~~~~~  105 (255)
                      +.+|||++|......++..+........++.++. ..|.+....+.+.   .++..++.++.|+++||+|||+.++++..
T Consensus         2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~   81 (417)
T d1pv7a_           2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT   81 (417)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH
T ss_pred             CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            3578888776655555555554444434444443 4677765555444   45777889999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCCchHH----HHHHHHHHHHHhhhhhhhhhhhccccch--hcHHHHHHHHHHHHHHhh
Q 045196          106 VAGSASILCTLFSNNNNNKGKGGGSWPQ----LIIEGVGFMAASTAFDVMYIYCVELFPT--NVRNIAVSFLRQALMLGA  179 (255)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~  179 (255)
                      +..++..+.....          .....    +....+.+...+...........+..+.  +.+....+........+.
T Consensus        82 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (417)
T d1pv7a_          82 GMLVMFAPFFIFI----------FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW  151 (417)
T ss_dssp             HHHHTHHHHHHHT----------HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh----------hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccc
Confidence            7777766665542          11111    1112222222222222222222222222  234445566666666777


Q ss_pred             hhhhhHHHh-hhcCCCchhHHHHHHHHHHHHH-HHHhccCCC
Q 045196          180 SVSPLLVVV-GRMSPSLSFLVFGALSIFSGVL-SLWLPETKN  219 (255)
Q Consensus       180 ~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~  219 (255)
                      .++|.+.+. ....+...+........+..++ .+..+++..
T Consensus       152 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         152 ALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHHHHhccccc
Confidence            777777763 3333444444444444443333 344455443