Citrus Sinensis ID: 045207

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIADKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWIKSVLCFAGFQKRESRDVLLERTTILEGGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWGV
ccccEEEEEccccccccccEEccccEEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccEEEcccccccccccccccccccHHHHHHHcccccEEEEEEEEcccccEEEccccccccHHEEcccccccEEEEEEEEEEEEEcccEEEEEEEEEEHHHHHHccHHHHEEEEEEEccccccccccccEEEEEEEEEcccHHHHHHHHHHHcccccccccccEEccHHHHHHHHccccccccccHHHcEEEEccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccHHHHHHcccc
cccEEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEcccccEEHHHHHHHHHHHHccccccEEEEEEEEccccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHcccccccccEHcHHHHHHHHccccccccHHHHHcccccccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccHEEEEEcccccccccccccccEEEEEEccc
khgleirvrggghyfegvsyvsnvPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHsvgvdghfsgrGYGLLLRKYGLAADHVVDAHLIDVegrfldresmgEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIADKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLflggvdrllplmDQSFHVLGLVKQDCIELSWIKsvlcfagfqkresrDVLLERTtileggkmseiseskipfrhragnicqiEHLVVWAEEGIEASQRHINWIGELYSyltpyvskdpreayinykdldigmnnegyttnykqASIWGV
khgleirvrggghyfeGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIADKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWIKSVLCfagfqkresrdvllerttileggkmseiseskiPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVSKDPREAYINYkdldigmnnegyttnykqasiwgv
KHGLEIRVRGGGHYFEGVSYVSNVPliiidlinlssinVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSgrgyglllrkyglAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIADKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWIKSVLCFAGFQKRESRDVLLERTTILEGGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWGV
*****IRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIADKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWIKSVLCFAGFQKRESRDVLLERTTILEGGKM**ISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIW**
*HGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIADKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWIKSVLCFAGFQKRESRDVLLERTTILEGGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWGV
KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIADKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWIKSVLCFAGFQKRESRDVLLERTTILEGGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWGV
*HGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIADKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWIKSVLCFAGFQKRESRDVLLERTTILEGGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWGV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIADKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWIKSVLCFAGFQKRESRDVLLERTTILEGGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query350 2.2.26 [Sep-21-2011]
A6P6V9544 Cannabidiolic acid syntha N/A no 0.988 0.636 0.436 4e-88
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.991 0.636 0.441 2e-87
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.991 0.636 0.441 3e-87
A6P6W1545 Cannabidiolic acid syntha N/A no 0.991 0.636 0.441 3e-87
A6P6W0545 Cannabidiolic acid syntha N/A no 0.991 0.636 0.438 6e-87
P93479535 Reticuline oxidase OS=Pap N/A no 0.962 0.629 0.400 7e-65
Q9SVG4570 Reticuline oxidase-like p no no 0.968 0.594 0.373 2e-63
P30986538 Reticuline oxidase OS=Esc N/A no 0.928 0.604 0.396 4e-63
P08159458 6-hydroxy-D-nicotine oxid N/A no 0.414 0.316 0.343 1e-11
O06997447 Uncharacterized FAD-linke yes no 0.64 0.501 0.282 4e-11
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function desciption
 Score =  325 bits (832), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/408 (43%), Positives = 257/408 (62%), Gaps = 62/408 (15%)

Query: 1   KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYK 60
           K GL+IR R GGH  EG+SY+S VP +I+DL N+ SI +DV ++ A V++ AT+G++YY 
Sbjct: 102 KVGLQIRTRSGGHDSEGMSYISQVPFVIVDLRNMRSIKIDVHSQTAWVEAGATLGEVYYW 161

Query: 61  IAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRES 120
           + EK++ L+  AG C +V   GHF G GYG L+R YGLAAD+++DAHL++V G+ LDR+S
Sbjct: 162 VNEKNENLSLAAGYCPTVCAGGHFGGGGYGPLMRNYGLAADNIIDAHLVNVHGKVLDRKS 221

Query: 121 MGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTI------------LNKWQYIAD 168
           MGEDLFWA+  GG  SFG+I+AWKI+LV VP++ T+F++            +NKWQ IA 
Sbjct: 222 MGEDLFWALRGGGAESFGIIVAWKIRLVAVPKS-TMFSVKKIMEIHELVKLVNKWQNIAY 280

Query: 169 KLDEDLIL--RIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQD 226
           K D+DL+L      R + D   K K  +   FS +FLGGVD L+ LM++SF  LG+ K D
Sbjct: 281 KYDKDLLLMTHFITRNITDNQGKNKTAIHTYFSSVFLGGVDSLVDLMNKSFPELGIKKTD 340

Query: 227 CIELSWIKSVLCFAGFQKRES----RDVLLERTT------------------------IL 258
           C +LSWI +++ ++G    ++    +++LL+R+                         IL
Sbjct: 341 CRQLSWIDTIIFYSGVVNYDTDNFNKEILLDRSAGQNGAFKIKLDYVKKPIPESVFVQIL 400

Query: 259 E-----------------GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHI 301
           E                 GG M EISES IPF HRAG + ++ ++  W ++  E +++H+
Sbjct: 401 EKLYEEDIGAGMYALYPYGGIMDEISESAIPFPHRAGILYELWYICSWEKQ--EDNEKHL 458

Query: 302 NWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWG 349
           NWI  +Y+++TPYVSK+PR AY+NY+DLDIG+N+     NY QA IWG
Sbjct: 459 NWIRNIYNFMTPYVSKNPRLAYLNYRDLDIGINDPKNPNNYTQARIWG 506
Catalyzes the stereoselective oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing cannabidiolate (CBDA), the major cannabioid in fiber-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 8
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
224115242 527 predicted protein [Populus trichocarpa] 0.997 0.662 0.566 1e-119
224122382 534 predicted protein [Populus trichocarpa] 0.994 0.651 0.559 1e-116
359483744 538 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.997 0.648 0.571 1e-114
359483732 499 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.934 0.655 0.567 1e-113
224115634 517 predicted protein [Populus trichocarpa] 0.994 0.673 0.543 1e-112
224056785 526 predicted protein [Populus trichocarpa] 0.997 0.663 0.516 1e-111
224103509 531 predicted protein [Populus trichocarpa] 0.994 0.655 0.529 1e-111
224061593 531 predicted protein [Populus trichocarpa] 0.994 0.655 0.527 1e-111
224122378 535 predicted protein [Populus trichocarpa] 0.994 0.650 0.536 1e-110
358348153 543 Reticuline oxidase [Medicago truncatula] 0.997 0.642 0.551 1e-110
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/404 (56%), Positives = 284/404 (70%), Gaps = 55/404 (13%)

Query: 1   KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYK 60
           KHG++IR+R GGH +EG+SYVS    ++IDLINL +INV+ EN+ A VQS  TIG++YY+
Sbjct: 90  KHGMQIRIRSGGHDYEGLSYVSTFSFVVIDLINLRTINVNAENKTAWVQSGVTIGEVYYR 149

Query: 61  IAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRES 120
           IAEKS+ LAF A +C +VGV GHFSG GYG+L+RKYGLAADH++DA L+DV+GR LDRES
Sbjct: 150 IAEKSRTLAFPASVCPTVGVGGHFSGGGYGMLMRKYGLAADHIIDAQLVDVKGRILDRES 209

Query: 121 MGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTI-----------LNKWQYIADK 169
           MGEDLFWAI  GGG +FGV+IAWKI LV+ P TVTVF +           +++WQ++ADK
Sbjct: 210 MGEDLFWAIRGGGGNTFGVVIAWKISLVSAPPTVTVFNVQRTLEQNASKLVHRWQFVADK 269

Query: 170 LDEDLILRIFLRRLVDATAKGKR--TMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDC 227
           L EDL +RI L R V++T +GK   T+QA F+ LFLGG+DRLLPL+  SF  LGLVK+DC
Sbjct: 270 LHEDLFIRIILNR-VNSTEEGKSNTTIQASFNSLFLGGIDRLLPLIQDSFPELGLVKEDC 328

Query: 228 IELSWIKSVLCFAGFQKRESRDVLLERTTILE---------------------------- 259
           IE+SWI+SVL F GF    S DVLL+RT                                
Sbjct: 329 IEMSWIQSVLYFDGFPSNSSLDVLLDRTPSTRRNFKAKSDYVKEPIPELGLEGIWERFFD 388

Query: 260 -------------GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGE 306
                        GGKMSEISES IPF HRAGNI +I+HL+ W EEGI A++RHI+WI  
Sbjct: 389 KDINTPILIFSPYGGKMSEISESSIPFPHRAGNIYKIQHLIYWDEEGIVATKRHISWIRR 448

Query: 307 LYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWGV 350
           LYSYL PYVSK PR AY+NY+DLDIG+NN    T+Y+QASIWG+
Sbjct: 449 LYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTSYRQASIWGL 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483744|ref|XP_003633009.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483732|ref|XP_003633008.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115634|ref|XP_002317084.1| predicted protein [Populus trichocarpa] gi|222860149|gb|EEE97696.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056785|ref|XP_002299022.1| predicted protein [Populus trichocarpa] gi|224056787|ref|XP_002299023.1| predicted protein [Populus trichocarpa] gi|222846280|gb|EEE83827.1| predicted protein [Populus trichocarpa] gi|222846281|gb|EEE83828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061593|ref|XP_002300557.1| predicted protein [Populus trichocarpa] gi|222847815|gb|EEE85362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122378|ref|XP_002330608.1| predicted protein [Populus trichocarpa] gi|222872166|gb|EEF09297.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348153|ref|XP_003638113.1| Reticuline oxidase [Medicago truncatula] gi|355504048|gb|AES85251.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.711 0.469 0.443 2.2e-80
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.705 0.459 0.435 2.2e-80
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.754 0.495 0.452 7.4e-80
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.765 0.501 0.438 1.7e-78
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.711 0.468 0.442 9.5e-78
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.674 0.435 0.446 8.5e-75
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.705 0.464 0.443 1.1e-74
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.702 0.462 0.426 4.7e-74
TAIR|locus:2044747540 AT2G34810 [Arabidopsis thalian 0.728 0.472 0.410 4.2e-71
TAIR|locus:2197950535 AT1G26380 [Arabidopsis thalian 0.725 0.474 0.447 1.1e-70
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 577 (208.2 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
 Identities = 118/266 (44%), Positives = 172/266 (64%)

Query:     1 KHGLEIRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYK 60
             K G+++R   GGH +EG+SY+S  P             +++ +E A +QS AT+G++YYK
Sbjct:   102 KLGVQVRTMSGGHDYEGLSYLSLSPFIIVDLVNLRSISINLTDETAWIQSGATLGEVYYK 161

Query:    61 IAEKSKILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRES 120
             IA+ SKI AF AGIC SVGV GH S             A+D+VVDA L+DV G+ LDR++
Sbjct:   162 IAKTSKIHAFAAGICPSVGVGGHISGGGFGTIMRKYGLASDNVVDARLMDVNGKTLDRKT 221

Query:   121 MGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFT-----------ILNKWQYIADK 169
             MGEDLFWA+  GG ASFGV+++WK+KL  VP+ VT F            ++++WQ I  +
Sbjct:   222 MGEDLFWALRGGGAASFGVVLSWKVKLARVPEKVTCFISQHPMGPSMNKLVHRWQSIGSE 281

Query:   170 LDEDLILRIFLRRLVDATAKG-KRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCI 228
             LDEDL +R+    ++D + +G +R +++ F  LFLGG+DRL+PLM+Q F  LGL  QDC 
Sbjct:   282 LDEDLFIRV----IIDNSLEGNQRKVKSTFQTLFLGGIDRLIPLMNQKFPELGLRSQDCS 337

Query:   229 ELSWIKSVLCFAGFQKRESRDVLLER 254
             E+SWI+S++ F  ++  +  ++LL R
Sbjct:   338 EMSWIESIMFF-NWRSGQPLEILLNR 362
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044747 AT2G34810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197950 AT1G26380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.202.20.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 2e-16
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 1e-13
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 1   KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYY 59
           ++GL + VRGGG    G + ++    +++DL  L+ I  +D E+  A V++  T+G L  
Sbjct: 22  ENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILEIDPEDGTATVEAGVTLGDLVR 79

Query: 60  KIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD 117
            +A K  +L    G      V G  +  G G    +YGL  D+V+   ++  +G  + 
Sbjct: 80  ALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGLTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 350
PLN02441525 cytokinin dehydrogenase 99.97
TIGR01676 541 GLDHase galactonolactone dehydrogenase. This model 99.96
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.96
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.96
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.96
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.96
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.95
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.95
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.95
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.94
PLN02465 573 L-galactono-1,4-lactone dehydrogenase 99.93
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.88
KOG1231505 consensus Proteins containing the FAD binding doma 99.88
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.81
KOG4730 518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.8
PRK11183564 D-lactate dehydrogenase; Provisional 99.76
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.68
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.65
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.64
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.64
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.63
KOG1262 543 consensus FAD-binding protein DIMINUTO [General fu 99.63
KOG1232511 consensus Proteins containing the FAD binding doma 99.6
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.6
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.5
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.3
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.11
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.07
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.06
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.94
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.84
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.6
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=99.97  E-value=1.7e-30  Score=261.22  Aligned_cols=152  Identities=22%  Similarity=0.294  Sum_probs=136.9

Q ss_pred             CCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCC-------eEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEe-cc
Q 045207            2 HGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSS-------INVDVENEIACVQSSATIGQLYYKIAEKSKILAFL-AG   73 (350)
Q Consensus         2 ~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~-------i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~-~g   73 (350)
                      ++++|++||+|||+.|++...+  |++|||++||+       +++|.+..+|+|++|++|.+|.+++.++|  ++++ .+
T Consensus        89 ~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~  164 (525)
T PLN02441         89 SPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWT  164 (525)
T ss_pred             CCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCcc
Confidence            5789999999999999887654  89999999999       37889999999999999999999999987  4332 35


Q ss_pred             CCCcceeccccccCccCCccccccchhhceeEEEEEccCCcEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCc
Q 045207           74 ICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQ  152 (350)
Q Consensus        74 ~~~~vgv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~  152 (350)
                      .+..+++||.++++|.|..+.+||..+|+|++++||+++|++++ ++++|+|||||+|||+ |+|||||++|+|++|+|+
T Consensus       165 d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~  243 (525)
T PLN02441        165 DYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPK  243 (525)
T ss_pred             ccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCC
Confidence            66788999999999999999999999999999999999999998 8888999999999998 899999999999999998


Q ss_pred             eEEEEE
Q 045207          153 TVTVFT  158 (350)
Q Consensus       153 ~~~~~~  158 (350)
                      ....+.
T Consensus       244 ~v~~~~  249 (525)
T PLN02441        244 RVRWIR  249 (525)
T ss_pred             ceEEEE
Confidence            655433

>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 2e-79
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 6e-63
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 2e-58
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-54
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-54
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 3e-54
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-54
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-53
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 3e-53
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-53
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 1e-09
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/408 (40%), Positives = 232/408 (56%), Gaps = 61/408 (14%)
Query: 1   KHGLEIRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYK 60
           K GL+IR R GGH  EG+SY+S VP             +DV ++ A V++ AT+G++YY 
Sbjct: 75  KVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYW 134
Query: 61  IAEKSKILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRES 120
           I EK++ L+F  G C +VGV GHFS             AAD+++DAHL++V+G+ LDR+S
Sbjct: 135 INEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKS 194
Query: 121 MGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTI------------LNKWQYIAD 168
           MGEDLFWAI  GGG +FG+I AWKIKLV VP   T+F++             NKWQ IA 
Sbjct: 195 MGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAY 254
Query: 169 KLDEDLIL--RIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQD 226
           K D+DL+L      + + D   K K T+   FS +F GGVD L+ LM++SF  LG+ K D
Sbjct: 255 KYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTD 314
Query: 227 CIELSWIKSVLCFAGFQKRES----RDVLLERTT------------------------IL 258
           C E SWI + + ++G     +    +++LL+R+                         IL
Sbjct: 315 CKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKIL 374
Query: 259 E-----------------GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHI 301
           E                 GG M EISES IPF HRAG + ++ +   W ++  E +++HI
Sbjct: 375 EKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHI 432
Query: 302 NWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWG 349
           NW+  +Y++ TPYVS++PR AY+NY+DLD+G  N     NY QA IWG
Sbjct: 433 NWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWG 480
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-117
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-116
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-101
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 5e-99
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 2e-93
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 8e-93
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-92
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 2e-91
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 5e-62
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 5e-28
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-23
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 9e-14
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 1e-12
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 3e-09
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
 Score =  347 bits (892), Expect = e-117
 Identities = 147/402 (36%), Positives = 217/402 (53%), Gaps = 60/402 (14%)

Query: 1   KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYK 60
           K    IR+R GGH +EG+SY S+ P I+IDL+NL+ +++D+E+E A V+S +T+G+LYY 
Sbjct: 67  KGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYA 126

Query: 61  IAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRES 120
           I E S  L F AG C +VG  GH SG G+G++ RKYGLAAD+VVDA LID  G  LDR++
Sbjct: 127 ITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQA 186

Query: 121 MGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTI------------LNKWQYIAD 168
           MGED+FWAI  GGG  +G I AWKIKL+ VP+ VTVF +            L+KWQ++A+
Sbjct: 187 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 246

Query: 169 KLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCI 228
           +L+ED  L +            ++ +     G   G         D  F  LGLV++D +
Sbjct: 247 ELEEDFTLSVLGG-------ADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 299

Query: 229 ELSWIKSVLCFAGFQKRESRDVLLERT----------------------TILE------- 259
           E+SW +S    AG +     +    +                        +LE       
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPN 359

Query: 260 --------GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYL 311
                   GG+MS+IS    PF HR+G    +E++V W +   +     ++W+ ++Y ++
Sbjct: 360 GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFM 419

Query: 312 TPYVSKDPREAYINYKDLDIGMNNEGYT----TNYKQASIWG 349
            P+VSK+PR  Y+N+ DLD+G  + G         + +  WG
Sbjct: 420 KPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWG 461
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.96
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.96
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.95
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.95
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.95
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.95
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.94
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.93
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 99.91
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.91
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.91
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.9
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.84
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.82
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.82
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.8
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.77
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.76
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 96.63
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 93.96
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 93.02
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=3e-64  Score=508.21  Aligned_cols=345  Identities=51%  Similarity=0.935  Sum_probs=288.8

Q ss_pred             CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCccee
Q 045207            1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGV   80 (350)
Q Consensus         1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv   80 (350)
                      ++++||++||||||+.+.+.....++++|||++||+|++|+++++|+||||+++++|+++|.++|+++.++.|.|++|||
T Consensus        75 ~~~~~v~vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgv  154 (518)
T 3vte_A           75 KVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGV  154 (518)
T ss_dssp             HHTCEEEEESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBH
T ss_pred             HcCCcEEEECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeee
Confidence            36899999999999998775333359999999999999999999999999999999999999998788999999999999


Q ss_pred             ccccccCccCCccccccchhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCceEEEEEe-
Q 045207           81 DGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTI-  159 (350)
Q Consensus        81 ~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~~~~~~~-  159 (350)
                      ||+++|||+|+++++||+++|+|++++||++||++++.+.+++|||||+||+++|+|||||+++||++|.|+.++.|.+ 
T Consensus       155 gG~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~  234 (518)
T 3vte_A          155 GGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVK  234 (518)
T ss_dssp             HHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEE
T ss_pred             eeeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEE
Confidence            9999999999999999999999999999999999997445689999999998448999999999999999987665543 


Q ss_pred             -----------hHHHHHHHhhccccceeEEEEeecc-Ccc-cCCCceEEEEEEEEEecCccCccchhcccccccCccccc
Q 045207          160 -----------LNKWQYIADKLDEDLILRIFLRRLV-DAT-AKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQD  226 (350)
Q Consensus       160 -----------~~~~~~~~~~~p~~l~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                                 +..||++++++|+++++.+.+...| .|. +.+...+.+.+.++|+|+.+++.+.|+++|++++....+
T Consensus       235 ~~~~~~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~  314 (518)
T 3vte_A          235 KNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTD  314 (518)
T ss_dssp             ECCCHHHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGG
T ss_pred             ecCCHHHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccc
Confidence                       6789999999999999999887532 111 111123578899999999999999998888888776678


Q ss_pred             eeEeCHHHHHHhhcCCCC----------------------------------CchHHHHHhccc-----c------ccCC
Q 045207          227 CIELSWIKSVLCFAGFQK----------------------------------RESRDVLLERTT-----I------LEGG  261 (350)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~ll~~~~-----~------l~GG  261 (350)
                      +.+++|++++.++++++.                                  .+.++.+++...     .      .|||
T Consensus       315 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GG  394 (518)
T 3vte_A          315 CKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGG  394 (518)
T ss_dssp             EEEECHHHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCG
T ss_pred             eeecchhhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCc
Confidence            999999997776543210                                  012344444321     1      4899


Q ss_pred             ccCCCCCCCCcccccCCceeEEEEEEEeCCCchhHHHHHHHHHHHHHHHhcCCCcCCCCcccccccCCCCC-CC-CCCCc
Q 045207          262 KMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVSKDPREAYINYKDLDIG-MN-NEGYT  339 (350)
Q Consensus       262 ai~~v~~~~TAf~hR~~~~~~~~~~~~w~~~~~~~~~~~~~wi~~~~~~l~p~~~~~~~~~YvNy~d~dl~-~~-~~~~~  339 (350)
                      +|++|++++|||+||+++.|.+++.+.|.++  +.++++++|++++++.|.||.++++.++|+||+|.||+ ++ ++  +
T Consensus       395 a~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~--~  470 (518)
T 3vte_A          395 IMEEISESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHAS--P  470 (518)
T ss_dssp             GGGTSCTTSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTS--C
T ss_pred             cccCCCCCCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCcccccccccc--c
Confidence            9999999999999998558999999999765  46778899999999999999776678999999999998 54 45  8


Q ss_pred             cceecccccC
Q 045207          340 TNYKQASIWG  349 (350)
Q Consensus       340 ~~~~~~~~~~  349 (350)
                      +.|++|+.||
T Consensus       471 ~~~~~~~~w~  480 (518)
T 3vte_A          471 NNYTQARIWG  480 (518)
T ss_dssp             CCHHHHHHHH
T ss_pred             cchhhhhhHH
Confidence            8899999886
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 350
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-09
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 3e-07
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 7/153 (4%)

Query: 1   KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLIN----LSSINVDVENEIACVQSSATIGQ 56
                I  RG GH   G ++     ++ +  +        INV  +              
Sbjct: 54  GWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWID 113

Query: 57  LYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFL 116
           +      +             + V G  S  G      ++G    +V++  +I   G  +
Sbjct: 114 VLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMV 172

Query: 117 D-RESMGEDLFWAILVGGGASFGVIIAWKIKLV 148
              + +  DLF A ++GG   FGVI   +I + 
Sbjct: 173 TCSKQLNADLFDA-VLGGLGQFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.95
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.92
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.91
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.63
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.6
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.56
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1e-33  Score=252.11  Aligned_cols=143  Identities=20%  Similarity=0.279  Sum_probs=130.9

Q ss_pred             CceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe------EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEe-ccCC
Q 045207            3 GLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI------NVDVENEIACVQSSATIGQLYYKIAEKSKILAFL-AGIC   75 (350)
Q Consensus         3 ~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i------~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~-~g~~   75 (350)
                      ++||++||+|||+.+.+..++  +|+|||++||+|      ++|++.++|+||||+++.||.++|.++|  +.++ .+.+
T Consensus        56 ~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~  131 (206)
T d1w1oa2          56 PYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDY  131 (206)
T ss_dssp             CCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSS
T ss_pred             CeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEEecCCCEEEEEcceehhhhhhhhhccc--cccccCCcc
Confidence            689999999999998877654  899999999985      6899999999999999999999999986  5444 3556


Q ss_pred             CcceeccccccCccCCccccccchhhceeEEEEEccCCcEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEeec
Q 045207           76 HSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLVTV  150 (350)
Q Consensus        76 ~~vgv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~  150 (350)
                      ..+++||+++++|+|..+++||+.+|+|+++|+|++||++++ ++++|+||||++||++ |+|||||++|||++|+
T Consensus       132 ~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         132 LYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             CCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             CceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            778899999999999999999999999999999999999998 7788999999999999 8999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure