Citrus Sinensis ID: 045210

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870---
Protein Sequence
MSVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccHHHccccccccEEEcccccccccccEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcHHHHcccccccEEEccccEEEEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHcccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccEEcccccHHHHHcccccEEEcccccccccccHHHHHHcccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHHccccccccccccEEEEEEEEccEEEEccccccccEEEEcccccccccccHHHHHcccccccccccccccccccccccccccccEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEcccccEEEEEEccccccccccccEEEEcccccccccccHHHHccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccHcHHcccccccEEEcccccccccccccHHHccccccEEEEcccccccccccHcHccccccEEEEccccccccccccHHHHcccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccccccEEEEcccccccccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHHHccccccEEEcccccccccccHHHcccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccccccccccEEEEccccccccccccccccccHHHHHHccccccccccccHHccccccEEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHcHHHHHEEccccccccccccEEEccccccHHHccccEEEEEEcccccccccccHHHHcHHHccEEEcccccccccccHHHHcHHcccEEEcccccccccccHHHHccHcccEccc
Coil and Loop (DISEMBL)
MSVGVALLFLHFLVISTINnninfcngssyaaaGCIESEREALLSFKQdledpsnrlaswnnigvgdcckwyGVVCDNITGHVLELrlrnpsrddgspaeyEAYERSKivgkinpsllglkHLIHLdlsyndfqgiqiprfLGSLENLMYLNISragfvgiiphqignlsnlqfldlrpnylgglyvedfgwVSHLSLLKhldlsgvdlsktsdgplitnslhsletlrfsgcllhhisplsfanfsslvtldisdnqfadssiVNQVLGLVNLVFLDlstnnfqgavpdaiqnstslqhldlsrnhfsssvpdwfnKFIDLEYLSLSYNelqgsipgslgnltsikslDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLesldlsnntLFGLLTnqignfknldsldlsfnnisghiplslgqlsslryldvstnnlngtlsenHFANLTKLVGFDASGNSLVLKvvspswtppfqlqaiglsscfigpqfpqwllsqnhliyldlsnssisdtipdRLVKSLSQINYLNLsynqifgqipdlndaaqletldlssnslsgplplipsslttldlssnflsgTLSRFLCNEMNNSMRLQVLNLgnntlsgeipdcwmNWSFLFFLHlgendftgnlptslgtlssLQILHLrgnrfsgkipvslqnctelrlfdisenefvgniptwIGERLSGIILLSLranqfhgffppelcglaslkildlssnnltgviPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVvkypigypyyLKVLDLSanyfsgeipsqvTNLVGlqtlklshnffsgripvnmgamKSVEALdfssnrlqgeipknmvnLEFLEIFNI
Flexible Loop (DISEMBL)
MSVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELrlrnpsrddgspaEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFssnrlqgeipknmvnlefleifni
Low Complexity Region (SEG)
MSVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSllglkhlihldlSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVshlsllkhldlsGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETldlssnslsgplplipsslttldlssnflsGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALivykkkvvkypigypyyLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI
Disordered region (IsUnstruct)
**VGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDL***SNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRL**************AYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETL***********PLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIF**
Disordered Region (DISOPRED)
***GVALLFLHFLVISTINNNINFCNGS*******IESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI
Disordered Region (DISEMBL)
MSVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI
Disordered Region (DISPRO)
*SVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	873	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.845	0.629	0.308	6e-75
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.882	0.616	0.305	5e-73
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.852	0.594	0.307	1e-71
O49318	1124	Probable leucine-rich rep	no	no	0.745	0.579	0.308	7e-67
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.859	0.629	0.313	2e-66
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.693	0.549	0.317	4e-61
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.620	0.477	0.318	8e-59
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.659	0.529	0.333	1e-58
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.730	0.578	0.303	3e-58
Q9LP24	1120	Probable leucine-rich rep	no	no	0.805	0.627	0.296	6e-58

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  282 bits (722), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 259/839 (30%), Positives = 380/839 (45%), Gaps = 101/839 (12%)

Query: 32  AAGCIESEREALLSFKQDLE-DPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRN 90
           A    E E EAL SFK  +  DP   L+ W  IG    C W G+ CD+ TGHV+ + L  
Sbjct: 23  AKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDS-TGHVVSVSLL- 80

Query: 91  PSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMY 150
                            ++ G ++P++  L +L  LDL+ N F G +IP  +G L  L  
Sbjct: 81  ---------------EKQLEGVLSPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTELNQ 124

Query: 151 LNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLS 210
           L +    F G IP  I  L N+ +LDLR N L G   E+    S L L+      G D +
Sbjct: 125 LILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLI------GFDYN 178

Query: 211 K-TSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL 269
             T   P     L  L+    +G  L    P+S                           
Sbjct: 179 NLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGT------------------------ 214

Query: 270 GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
            L NL  LDLS N   G +P    N  +LQ L L+ N     +P        L  L L  
Sbjct: 215 -LANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYD 273

Query: 330 NELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLD 389
           N+L G IP  LGNL  +++L +  N+L S IP +  RL  L  + LS N L   IS+ + 
Sbjct: 274 NQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIG 333

Query: 390 MFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRY 449
              +     LE L L +N   G     I N +NL  L + FNNISG +P  LG L++LR 
Sbjct: 334 FLES-----LEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRN 388

Query: 450 LDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGP 509
           L    N L G +  +  +N T L   D S N +  ++  P       L  I +       
Sbjct: 389 LSAHDNLLTGPIPSS-ISNCTGLKLLDLSHNQMTGEI--PRGFGRMNLTFISIGRNHFTG 445

Query: 510 QFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQ 568
           + P  + + ++L  L +++++++ T+   L+  L ++  L +SYN + G IP ++ +   
Sbjct: 446 EIPDDIFNCSNLETLSVADNNLTGTLKP-LIGKLQKLRILQVSYNSLTGPIPREIGNLKD 504

Query: 569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL 628
           L  L L SN  +G +P                          EM+N   LQ L + +N L
Sbjct: 505 LNILYLHSNGFTGRIP-------------------------REMSNLTLLQGLRMYSNDL 539

Query: 629 SGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT 688
            G IP+   +   L  L L  N F+G +P     L SL  L L+GN+F+G IP SL++ +
Sbjct: 540 EGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLS 599

Query: 689 ELRLFDISENEFVGNIPTWIGERLSGI----ILLSLRANQFHGFFPPELCGLASLKILDL 744
            L  FDIS+N   G IP   GE L+ +    + L+   N   G  P EL  L  ++ +DL
Sbjct: 600 LLNTFDISDNLLTGTIP---GELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDL 656

Query: 745 SSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSAN 804
           S+N  +G IPR +       K V  +D F ++ L  +    V   +     +  L+LS N
Sbjct: 657 SNNLFSGSIPRSLQ----ACKNVFTLD-FSQNNLSGHIPDEVFQGMDM---IISLNLSRN 708

Query: 805 YFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMV 863
            FSGEIP    N+  L +L LS N  +G IP ++  + +++ L  +SN L+G +P++ V
Sbjct: 709 SFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGV 767

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  276 bits (706), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 270/885 (30%), Positives = 410/885 (46%), Gaps = 115/885 (12%)

Query: 28  SSYAAAGCIESEREALLSFKQDL------EDPSNRLASWNNIGVGDCCKWYGVVCDNITG 81
           S     G I ++ + LL  K+ L      +DP   L  WN+  + + C W GV CDN TG
Sbjct: 15  SGLGQPGIINNDLQTLLEVKKSLVTNPQEDDP---LRQWNSDNI-NYCSWTGVTCDN-TG 69

Query: 82  --HVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIP 139
              V+ L L                    + G I+P      +LIHLDLS N+  G  IP
Sbjct: 70  LFRVIALNLTGLG----------------LTGSISPWFGRFDNLIHLDLSSNNLVG-PIP 112

Query: 140 RFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLL 199
             L +L +L  L +      G IP Q+G+L N++ L +  N L G   E  G        
Sbjct: 113 TALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLG-------- 164

Query: 200 KHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQF 259
                                +L +L+ L  + C L    P        + +L + DN +
Sbjct: 165 ---------------------NLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDN-Y 202

Query: 260 ADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKF 319
            +  I  ++    +L     + N   G +P  +    +L+ L+L+ N  +  +P    + 
Sbjct: 203 LEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEM 262

Query: 320 IDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK 379
             L+YLSL  N+LQG IP SL +L ++++LDLS N L  +IP  F  +  L  + L+ N 
Sbjct: 263 SQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNH 322

Query: 380 LSQEISQVLDMFSACASNV-LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438
           LS  + +     S C++N  LE L LS   L G +  ++   ++L  LDLS N+++G IP
Sbjct: 323 LSGSLPK-----SICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIP 377

Query: 439 LSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQ 498
            +L +L  L  L +  N L GTLS +  +NLT L       N+L  K+     +   +L+
Sbjct: 378 EALFELVELTDLYLHNNTLEGTLSPS-ISNLTNLQWLVLYHNNLEGKL-PKEISALRKLE 435

Query: 499 AIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFG 558
            + L       + PQ + +   L  +D+  +     IP  + + L ++N L+L  N++ G
Sbjct: 436 VLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELVG 494

Query: 559 QIP-DLNDAAQLETLDLSSNSLSGPLPL---------------------IPSSL------ 590
            +P  L +  QL  LDL+ N LSG +P                      +P SL      
Sbjct: 495 GLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNL 554

Query: 591 TTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEN 650
           T ++LS N L+GT+   LC     S      ++ NN    EIP    N   L  L LG+N
Sbjct: 555 TRINLSHNRLNGTI-HPLCG----SSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKN 609

Query: 651 DFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGE 710
             TG +P +LG +  L +L +  N  +G IP+ L  C +L   D++ N   G IP W+G 
Sbjct: 610 QLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG- 668

Query: 711 RLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEV 770
           +LS +  L L +NQF    P EL     L +L L  N+L G IP+ I NL  +   VL +
Sbjct: 669 KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGAL--NVLNL 726

Query: 771 DK-FFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQT-LKLSHN 828
           DK  F  +L     K+ K        L  L LS N  +GEIP ++  L  LQ+ L LS+N
Sbjct: 727 DKNQFSGSLPQAMGKLSK--------LYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYN 778

Query: 829 FFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
            F+G IP  +G +  +E LD S N+L GE+P ++ +++ L   N+
Sbjct: 779 NFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNV 823

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  272 bits (695), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 261/848 (30%), Positives = 393/848 (46%), Gaps = 104/848 (12%)

Query: 57  LASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPS 116
           L  WN+ G    C W GV C      ++ L L                    + G I+PS
Sbjct: 50  LRDWNS-GSPSYCNWTGVTCGG--REIIGLNLSGLG----------------LTGSISPS 90

Query: 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFV-GIIPHQIGNLSNLQFL 175
           +    +LIH+DLS N   G  IP  L +L + +      +  + G IP Q+G+L NL+ L
Sbjct: 91  IGRFNNLIHIDLSSNRLVG-PIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSL 149

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
            L  N L G   E FG                             +L +L+ L  + C L
Sbjct: 150 KLGDNELNGTIPETFG-----------------------------NLVNLQMLALASCRL 180

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS 295
             + P  F     L TL + DN+  +  I  ++    +L     + N   G++P  +   
Sbjct: 181 TGLIPSRFGRLVQLQTLILQDNEL-EGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRL 239

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
            +LQ L+L  N FS  +P      + ++YL+L  N+LQG IP  L  L ++++LDLS N 
Sbjct: 240 KNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNN 299

Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV-LESLDLSNNTLFGLLT 414
           L   I   F R+  L  + L+ N+LS  + + +     C++N  L+ L LS   L G + 
Sbjct: 300 LTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTI-----CSNNTSLKQLFLSETQLSGEIP 354

Query: 415 NQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVG 474
            +I N ++L  LDLS N ++G IP SL QL  L  L ++ N+L GTLS +  +NLT L  
Sbjct: 355 AEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSS-ISNLTNLQE 413

Query: 475 FDASGNSLVLKVVSPSWTPPF-QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISD 533
           F    N+L  KV  P       +L+ + L       + P  + +   L  +D   + +S 
Sbjct: 414 FTLYHNNLEGKV--PKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSG 471

Query: 534 TIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTT 592
            IP  + + L  +  L+L  N++ G IP  L +  Q+  +DL+ N LSG +P     LT 
Sbjct: 472 EIPSSIGR-LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTA 530

Query: 593 LDL---SSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF----- 644
           L+L    +N L G L   L N  N    L  +N  +N  +G I     + S+L F     
Sbjct: 531 LELFMIYNNSLQGNLPDSLINLKN----LTRINFSSNKFNGSISPLCGSSSYLSFDVTEN 586

Query: 645 ------------------LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQN 686
                             L LG+N FTG +P + G +S L +L +  N  SG IPV L  
Sbjct: 587 GFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL 646

Query: 687 CTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746
           C +L   D++ N   G IPTW+G +L  +  L L +N+F G  P E+  L ++  L L  
Sbjct: 647 CKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDG 705

Query: 747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYF 806
           N+L G IP+ I NL  +    LE ++             +   IG    L  L LS N  
Sbjct: 706 NSLNGSIPQEIGNLQALNALNLEENQL---------SGPLPSTIGKLSKLFELRLSRNAL 756

Query: 807 SGEIPSQVTNLVGLQT-LKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNL 865
           +GEIP ++  L  LQ+ L LS+N F+GRIP  +  +  +E+LD S N+L GE+P  + ++
Sbjct: 757 TGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDM 816

Query: 866 EFLEIFNI 873
           + L   N+
Sbjct: 817 KSLGYLNL 824

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  256 bits (653), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 226/733 (30%), Positives = 337/733 (45%), Gaps = 82/733 (11%)

Query: 36  IESEREALLSFK-QDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRD 94
           + S+ + LL  K +  +D  NRL +WN I    C  W GV C +         L   S D
Sbjct: 33  LNSDGQFLLELKNRGFQDSLNRLHNWNGIDETPC-NWIGVNCSSQGSSSSSNSLVVTSLD 91

Query: 95  DGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNIS 154
             S           + G ++PS+ GL +L++L+L+YN   G  IPR +G+   L  + ++
Sbjct: 92  LSS---------MNLSGIVSPSIGGLVNLVYLNLAYNALTG-DIPREIGNCSKLEVMFLN 141

Query: 155 RAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSD 214
              F G IP +I  LS L+  ++  N L G   E+ G + +L  L       V  +    
Sbjct: 142 NNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEEL-------VAYTNNLT 194

Query: 215 GPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNL 274
           GPL                      P S  N + L T     N F+  +I  ++   +NL
Sbjct: 195 GPL----------------------PRSLGNLNKLTTFRAGQNDFS-GNIPTEIGKCLNL 231

Query: 275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG 334
             L L+ N   G +P  I     LQ + L +N FS  +P        LE L+L  N L G
Sbjct: 232 KLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVG 291

Query: 335 SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
            IP  +GN+ S+K L L  N+L   IP+   +L  +  ++ S N LS EI   L   S  
Sbjct: 292 PIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISE- 350

Query: 395 ASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVST 454
               L  L L  N L G++ N++   +NL  LDLS N+++G IP     L+S+R L +  
Sbjct: 351 ----LRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFH 406

Query: 455 NNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW 514
           N+L+G + +                    L + SP W        +  S   +  + P +
Sbjct: 407 NSLSGVIPQG-------------------LGLYSPLW-------VVDFSENQLSGKIPPF 440

Query: 515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLD 573
           +  Q++LI L+L ++ I   IP  +++  S +  L +  N++ GQ P +L     L  ++
Sbjct: 441 ICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQ-LRVVGNRLTGQFPTELCKLVNLSAIE 499

Query: 574 LSSNSLSGPLPL---IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
           L  N  SGPLP        L  L L++N  S  L     NE++    L   N+ +N+L+G
Sbjct: 500 LDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLP----NEISKLSNLVTFNVSSNSLTG 555

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690
            IP    N   L  L L  N F G+LP  LG+L  L+IL L  NRFSG IP ++ N T L
Sbjct: 556 PIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHL 615

Query: 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
               +  N F G+IP  +G   S  I ++L  N F G  PPE+  L  L  L L++N+L+
Sbjct: 616 TELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLS 675

Query: 751 GVIPRCINNLAGM 763
           G IP    NL+ +
Sbjct: 676 GEIPTTFENLSSL 688

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  254 bits (650), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 266/849 (31%), Positives = 397/849 (46%), Gaps = 99/849 (11%)

Query: 36  IESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDD 95
           + SE  +L+SFK+ LE+PS  L+SWN       C W GV C  + G V  L L + S   
Sbjct: 23  LSSETTSLISFKRSLENPS-LLSSWNVSSSASHCDWVGVTC--LLGRVNSLSLPSLSLRG 79

Query: 96  GSPAEYEAYER--------SKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLEN 147
             P E  + +         ++  GKI P +  LKHL  LDLS N   G+ +PR L  L  
Sbjct: 80  QIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGL-LPRLLSELPQ 138

Query: 148 LMYLNISRAGFVGIIPHQIG-NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           L+YL++S   F G +P     +L  L  LD+  N L G    + G +S+LS L ++ L+ 
Sbjct: 139 LLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNL-YMGLN- 196

Query: 207 VDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN 266
              S +   P    ++  L+      C  +   P   +    L  LD+S N     SI  
Sbjct: 197 ---SFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPL-KCSIPK 252

Query: 267 QVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLS 326
               L NL  L+L +    G +P  + N  SL+ L LS N  S  +P   ++ I L   S
Sbjct: 253 SFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSE-IPLLTFS 311

Query: 327 LSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQ 386
              N+L GS+P  +G    + SL L+ NR   +IP   +    L+ ++L+ N LS  I +
Sbjct: 312 AERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPR 371

Query: 387 VLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSS 446
            L     C S  LE++DLS N L G +        +L  L L+ N I+G IP  L +L  
Sbjct: 372 EL-----CGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLP- 425

Query: 447 LRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF 506
           L  LD+ +NN  G + ++ + + T L+ F AS N L                        
Sbjct: 426 LMALDLDSNNFTGEIPKSLWKS-TNLMEFTASYNRLE----------------------- 461

Query: 507 IGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLND 565
                P  + +   L  L LS++ ++  IP R +  L+ ++ LNL+ N   G+IP +L D
Sbjct: 462 --GYLPAEIGNAASLKRLVLSDNQLTGEIP-REIGKLTSLSVLNLNANMFQGKIPVELGD 518

Query: 566 AAQLETLDLSSNSLSGPLPLIPSSLTTLD---LSSNFLSGTL-----SRFLCNEMNNSMR 617
              L TLDL SN+L G +P   ++L  L    LS N LSG++     + F   EM +   
Sbjct: 519 CTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSF 578

Query: 618 LQ---VLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN 674
           LQ   + +L  N LSG IP+       L  + L  N  +G +P SL  L++L IL L GN
Sbjct: 579 LQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGN 638

Query: 675 RFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELC 734
             +G IP  + N  +L+  +++ N+  G+IP   G  L  ++ L+L  N+  G  P  L 
Sbjct: 639 ALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFG-LLGSLVKLNLTKNKLDGPVPASLG 697

Query: 735 GLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPY 794
            L  L  +DLS NNL+G +    + L+ M K                             
Sbjct: 698 NLKELTHMDLSFNNLSGELS---SELSTMEK----------------------------- 725

Query: 795 YLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854
            L  L +  N F+GEIPS++ NL  L+ L +S N  SG IP  +  + ++E L+ + N L
Sbjct: 726 -LVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNL 784

Query: 855 QGEIPKNMV 863
           +GE+P + V
Sbjct: 785 RGEVPSDGV 793

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  237 bits (604), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 218/687 (31%), Positives = 317/687 (46%), Gaps = 82/687 (11%)

Query: 194 SHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLD 253
           +HL  +  +DL+G++LS T   PLI   LH L  L  S   +    P   +   SL  LD
Sbjct: 64  THLRTVTSVDLNGMNLSGTLS-PLIC-KLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLD 121

Query: 254 ISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP 313
           +  N+F    I  Q+  ++ L  L L  N   G++P  I N +SLQ L +  N+ +  +P
Sbjct: 122 LCTNRF-HGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIP 180

Query: 314 DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSV 373
               K   L  +    N   G IP  +    S+K L L+ N LE  +P+  ++L++L  +
Sbjct: 181 PSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDL 240

Query: 374 NLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNI 433
            L  N+LS EI   +   S      LE L L  N   G +  +IG    +  L L  N +
Sbjct: 241 ILWQNRLSGEIPPSVGNISR-----LEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQL 295

Query: 434 SGHIPLSLGQLSSLRYLDVSTNNLNGTLSEN--HFANLTKLVGFDASGNSLVLKVVSPSW 491
           +G IP  +G L     +D S N L G + +   H  NL  L  F+               
Sbjct: 296 TGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFE--------------- 340

Query: 492 TPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNL 551
                       +  +GP  P+ L     L  LDLS + ++ TIP  L + L  +  L L
Sbjct: 341 ------------NILLGP-IPRELGELTLLEKLDLSINRLNGTIPQEL-QFLPYLVDLQL 386

Query: 552 SYNQIFGQIPDL-NDAAQLETLDLSSNSLSGPLP---LIPSSLTTLDLSSNFLSGTLSRF 607
             NQ+ G+IP L    +    LD+S+NSLSGP+P       +L  L L SN LSG + R 
Sbjct: 387 FDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPR- 445

Query: 608 LCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQ 667
              ++     L  L LG+N L+G +P    N   L  L L +N  +GN+   LG L +L+
Sbjct: 446 ---DLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLE 502

Query: 668 ILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHG 727
            L L  N F+G+IP  + N T++  F+IS N+  G+IP  +G  ++ I  L L  N+F G
Sbjct: 503 RLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVT-IQRLDLSGNKFSG 561

Query: 728 FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVK 787
           +   EL  L  L+IL LS N LTG IP    +L  + +                      
Sbjct: 562 YIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLME---------------------- 599

Query: 788 YPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQ-TLKLSHNFFSGRIPVNMGAMKSVEA 846
                      L L  N  S  IP ++  L  LQ +L +SHN  SG IP ++G ++ +E 
Sbjct: 600 -----------LQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEI 648

Query: 847 LDFSSNRLQGEIPKNMVNLEFLEIFNI 873
           L  + N+L GEIP ++ NL  L I NI
Sbjct: 649 LYLNDNKLSGEIPASIGNLMSLLICNI 675

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  229 bits (584), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 189/594 (31%), Positives = 286/594 (48%), Gaps = 52/594 (8%)

Query: 298 LQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE 357
           +  + L R   S  + D  +    L  LSL  N   G+IP SL   T + S+ L +N L 
Sbjct: 70  VTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLS 129

Query: 358 SKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQI 417
            K+P A + L  L   N++GN+LS EI   L        + L+ LD+S+NT  G + + +
Sbjct: 130 GKLPPAMRNLTSLEVFNVAGNRLSGEIPVGL-------PSSLQFLDISSNTFSGQIPSGL 182

Query: 418 GNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDA 477
            N   L  L+LS+N ++G IP SLG L SL+YL +  N L GTL  +  +N + LV   A
Sbjct: 183 ANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLP-SAISNCSSLVHLSA 241

Query: 478 SGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTI-P 536
           S N  +  V+  ++    +L+ + LS+       P  L     L  + L  ++ SD + P
Sbjct: 242 SENE-IGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRP 300

Query: 537 DRLVKSLSQINYLNLSYNQIFGQIP-------------------------DLNDAAQLET 571
           +      + +  L+L  N+I G+ P                         D+ +  +LE 
Sbjct: 301 ETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEE 360

Query: 572 LDLSSNSLSGPLPL---IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL 628
           L L++NSL+G +P+      SL  LD   N L G +  FL         L+VL+LG N+ 
Sbjct: 361 LKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFL----GYMKALKVLSLGRNSF 416

Query: 629 SGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT 688
           SG +P   +N   L  L+LGEN+  G+ P  L  L+SL  L L GNRFSG +PVS+ N +
Sbjct: 417 SGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLS 476

Query: 689 ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748
            L   ++S N F G IP  +G  L  +  L L      G  P EL GL +++++ L  NN
Sbjct: 477 NLSFLNLSGNGFSGEIPASVGN-LFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNN 535

Query: 749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808
            +GV+P   ++L  +    L  + F  +         +    G+   L  L LS N+ SG
Sbjct: 536 FSGVVPEGFSSLVSLRYVNLSSNSFSGE---------IPQTFGFLRLLVSLSLSDNHISG 586

Query: 809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNM 862
            IP ++ N   L+ L+L  N   G IP ++  +  ++ LD   N L GEIP  +
Sbjct: 587 SIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEI 640

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  228 bits (582), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 206/617 (33%), Positives = 304/617 (49%), Gaps = 41/617 (6%)

Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYN 330
           L +LV LDLS N+F G +P  + N TSL++LDLS N FS  VPD F    +L +L L  N
Sbjct: 99  LKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRN 158

Query: 331 ELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDM 390
            L G IP S+G L  +  L +S+N L   IP        L  + L+ NKL+  +   L +
Sbjct: 159 NLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYL 218

Query: 391 FSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYL 450
                   L  L +SNN+L G L     N K L SLDLSFN+  G +P  +G  SSL  L
Sbjct: 219 LEN-----LGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSL 273

Query: 451 DVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQ 510
            +   NL GT+  +    L K+   D S N L   +          L+ + L+   +  +
Sbjct: 274 VMVKCNLTGTIPSS-MGMLRKVSVIDLSDNRLSGNIPQELGNCS-SLETLKLNDNQLQGE 331

Query: 511 FPQWLLSQNHLIYLDLSNSSISDTIPDRL--VKSLSQINYLNLSYNQIFGQIP-DLNDAA 567
            P  L     L  L+L  + +S  IP  +  ++SL+Q+   N   N + G++P ++    
Sbjct: 332 IPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYN---NTLTGELPVEVTQLK 388

Query: 568 QLETLDLSSNSLSGPLPL---IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLG 624
            L+ L L +N   G +P+   +  SL  +DL  N  +G +   LC    +  +L++  LG
Sbjct: 389 HLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLC----HGQKLRLFILG 444

Query: 625 NNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSL 684
           +N L G+IP        L  + L +N  +G LP    +L SL  ++L  N F G IP SL
Sbjct: 445 SNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESL-SLSYVNLGSNSFEGSIPRSL 503

Query: 685 QNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDL 744
            +C  L   D+S+N+  G IP  +G  L  + LL+L  N   G  P +L G A L   D+
Sbjct: 504 GSCKNLLTIDLSQNKLTGLIPPELGN-LQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDV 562

Query: 745 SSNNLTGVIPRCI-------------NNLAGMAKEVL-EVDKFFEDALIVYKKKVVKYP- 789
            SN+L G IP                NN  G   + L E+D+   D  I       K P 
Sbjct: 563 GSNSLNGSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELDR-LSDLRIARNAFGGKIPS 621

Query: 790 -IGYPYYLKV-LDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEAL 847
            +G    L+  LDLSAN F+GEIP+ +  L+ L+ L +S+N  +G + V + ++KS+  +
Sbjct: 622 SVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPLSV-LQSLKSLNQV 680

Query: 848 DFSSNRLQGEIPKNMVN 864
           D S N+  G IP N+++
Sbjct: 681 DVSYNQFTGPIPVNLLS 697

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  227 bits (579), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 223/734 (30%), Positives = 328/734 (44%), Gaps = 96/734 (13%)

Query: 39  EREALLSFKQDLEDPSNRLASWN-NIGVGDCCKWYGVVCDNITG--HVLELRLRNPSRDD 95
           E + LL  K    D    L +WN N  V   C W GV+C N +    VL L L +     
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNSNDSVP--CGWTGVMCSNYSSDPEVLSLNLSS----- 82

Query: 96  GSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISR 155
                        + GK++PS+ GL HL  LDLSYN   G +IP+ +G+  +L  L ++ 
Sbjct: 83  -----------MVLSGKLSPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNN 130

Query: 156 AGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDG 215
             F G IP +IG L +L+ L +  N + G    + G +  LS L       V  S    G
Sbjct: 131 NQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQL-------VTYSNNISG 183

Query: 216 PLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLV 275
            L                      P S  N   L +     N  +  S+ +++ G  +LV
Sbjct: 184 QL----------------------PRSIGNLKRLTSFRAGQNMIS-GSLPSEIGGCESLV 220

Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
            L L+ N   G +P  I     L  + L  N FS  +P   +    LE L+L  N+L G 
Sbjct: 221 MLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGP 280

Query: 336 IPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
           IP  LG+L S++ L L  N L   IPR    L +   ++ S N L+ EI   L       
Sbjct: 281 IPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEG-- 338

Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
              LE L L  N L G +  ++   KNL  LDLS N ++G IPL    L  L  L +  N
Sbjct: 339 ---LELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQN 395

Query: 456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
           +L+GT                          + P       L  + +S   +  + P +L
Sbjct: 396 SLSGT--------------------------IPPKLGWYSDLWVLDMSDNHLSGRIPSYL 429

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLV--KSLSQINYLNLSYNQIFGQIP-DLNDAAQLETL 572
              +++I L+L  +++S  IP  +   K+L Q   L L+ N + G+ P +L     +  +
Sbjct: 430 CLHSNMIILNLGTNNLSGNIPTGITTCKTLVQ---LRLARNNLVGRFPSNLCKQVNVTAI 486

Query: 573 DLSSNSLSGPLPLIP---SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
           +L  N   G +P      S+L  L L+ N  +G L R    E+    +L  LN+ +N L+
Sbjct: 487 ELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPR----EIGMLSQLGTLNISSNKLT 542

Query: 630 GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTE 689
           GE+P    N   L  L +  N+F+G LP+ +G+L  L++L L  N  SG IPV+L N + 
Sbjct: 543 GEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSR 602

Query: 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
           L    +  N F G+IP  +G      I L+L  N+  G  PPEL  L  L+ L L++NNL
Sbjct: 603 LTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNL 662

Query: 750 TGVIPRCINNLAGM 763
           +G IP    NL+ +
Sbjct: 663 SGEIPSSFANLSSL 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  226 bits (576), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 239/806 (29%), Positives = 353/806 (43%), Gaps = 103/806 (12%)

Query: 38  SEREALLSFKQDLEDPSNRLASW----NNIGVGDCCKWYGVVCDNITGHVLELRLRNPSR 93
           +E  ALL +K    + S++L+SW    N      C  WYGV C N  G + EL L N   
Sbjct: 32  AEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLTN--- 86

Query: 94  DDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNI 153
             G    ++ +             + L +L ++DLS N   G   P+F G+L  L+Y ++
Sbjct: 87  -TGIEGTFQDF-----------PFISLSNLAYVDLSMNLLSGTIPPQF-GNLSKLIYFDL 133

Query: 154 SRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTS 213
           S     G I   +GNL NL  L L  NYL  +   + G +  ++     DL+      T 
Sbjct: 134 STNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMT-----DLALSQNKLTG 188

Query: 214 DGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVN 273
             P    +L +L  L      L  + P    N  S+  L +S N+    SI + +  L N
Sbjct: 189 SIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLT-GSIPSTLGNLKN 247

Query: 274 LVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
           L+ L L  N   G +P  I N  S+ +L LS+N  + S+P       +L  LSL  N L 
Sbjct: 248 LMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLT 307

Query: 334 GSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
           G IP  LGN+ S+  L+LS N+L   IP +   L++L  + L  N L+  I   L    +
Sbjct: 308 GGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMES 367

Query: 394 CASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
                +  L L+NN L G + +  GN KNL  L L  N ++G IP  LG + S+  LD+S
Sbjct: 368 -----MIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLS 422

Query: 454 TNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQ 513
            N L G++ ++ F N TKL        SL L+V                    +    P 
Sbjct: 423 QNKLTGSVPDS-FGNFTKL-------ESLYLRV------------------NHLSGAIPP 456

Query: 514 WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-LNDAAQLETL 572
            + + +HL  L L  ++ +   P+ + K   ++  ++L YN + G IP  L D   L   
Sbjct: 457 GVANSSHLTTLILDTNNFTGFFPETVCKG-RKLQNISLDYNHLEGPIPKSLRDCKSLIRA 515

Query: 573 DLSSNSLSGPLPL---IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
               N  +G +     I   L  +D S N   G +S    +    S +L  L + NN ++
Sbjct: 516 RFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEIS----SNWEKSPKLGALIMSNNNIT 571

Query: 630 GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTE 689
           G IP    N + L  L L  N+  G LP ++G L++L  L L GN+ SG++P  L   T 
Sbjct: 572 GAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTN 631

Query: 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
           L   D+S N F   IP      L  +  ++L  N+F G   P L  L  L  LDLS N L
Sbjct: 632 LESLDLSSNNFSSEIPQTFDSFLK-LHDMNLSRNKFDGSI-PRLSKLTQLTQLDLSHNQL 689

Query: 750 TGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE 809
            G IP  +++L  + K                                 LDLS N  SG 
Sbjct: 690 DGEIPSQLSSLQSLDK---------------------------------LDLSHNNLSGL 716

Query: 810 IPSQVTNLVGLQTLKLSHNFFSGRIP 835
           IP+    ++ L  + +S+N   G +P
Sbjct: 717 IPTTFEGMIALTNVDISNNKLEGPLP 742

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	873
350284759	980	receptor-like protein [Malus micromalus]	0.973	0.867	0.467	0.0
224072885	1024	predicted protein [Populus trichocarpa]	0.958	0.817	0.476	0.0
255581850	1082	leucine-rich repeat receptor protein kin	0.982	0.792	0.444	0.0
350284745	976	receptor-like protein [Malus x domestica	0.969	0.866	0.466	0.0
315436720	1020	verticillium wilt resistance-like protei	0.987	0.845	0.463	0.0
350284747	978	receptor-like protein [Malus x domestica	0.969	0.865	0.464	0.0
350284771	978	receptor-like protein [Malus x domestica	0.969	0.865	0.463	0.0
350284741	982	receptor-like protein [Malus x domestica	0.974	0.866	0.458	0.0
350284739	978	receptor-like protein [Malus x domestica	0.972	0.868	0.462	0.0
209970607	1045	M18S-3Ap [Malus floribunda]	0.986	0.823	0.432	0.0

>gi|350284759|gb|AEQ27751.1| receptor-like protein [Malus micromalus]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/887 (46%), Positives = 556/887 (62%), Gaps = 37/887 (4%)

Query: 2   SVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWN 61
           ++ V +L + FL I+TI  +I  CNG+      C ESER ALL FKQDL+DP+N+LASW 
Sbjct: 4   TMRVVILLIRFLAIATITFSIGLCNGNPSWPPLCKESERRALLMFKQDLKDPANQLASWV 63

Query: 62  NIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLK 121
                DCC W  VVCD++TGH+ EL L N S  D  P  Y         GKINPSLL LK
Sbjct: 64  AEEGSDCCSWTRVVCDHMTGHIHELHL-NGSDSDLDPDSYFG-------GKINPSLLSLK 115

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
           HL  LDLSYNDF   +IP F GS+ +L +LN++ + F GIIPH++GNLS+L +L+L   Y
Sbjct: 116 HLNFLDLSYNDFYTTRIPSFFGSMTSLTHLNLAYSWFDGIIPHKLGNLSSLHYLNLSTLY 175

Query: 182 LGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPL 241
              L VE+  W+S LSLLKHLDLS V+L K SD   +TN L SL  L  S C LH I PL
Sbjct: 176 RSNLKVENLQWISGLSLLKHLDLSNVNLGKASDWLQVTNMLPSLVELHMSYCHLHQIPPL 235

Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHL 301
              NF+SLV LD+S N F +S +   V  L NL+ + LS   FQG +P   QN TSL+ +
Sbjct: 236 PTPNFTSLVVLDLSGNSF-NSLMSRWVFSLKNLISIHLSDCGFQGPIPSISQNITSLREI 294

Query: 302 DLSRNHFS-SSVPDW-FN-KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES 358
           DLS N+ S   +P W FN KF++   LSL  N+L G +P S+ N+T + +L+L +N   S
Sbjct: 295 DLSSNYISLDLIPKWLFNQKFLE---LSLEANQLTGQLPSSIQNMTGLIALNLGWNEFNS 351

Query: 359 KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG 418
            IP     L +L S++LS N L  EIS  +    +     L  LDLSNN++ G +   +G
Sbjct: 352 TIPEWLYSLNNLESLHLSHNALRGEISSSIGNLKS-----LRHLDLSNNSISGPIPMSLG 406

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
           N  +L+ LD+S N  +G     + QL  L  LD+S N+L G +SE  F+NL KL  F A 
Sbjct: 407 NLSSLEKLDISVNQFNGTFTEVIDQLKMLTDLDISYNSLEGVVSEVSFSNLIKLKHFVAK 466

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDR 538
           GNS  LK  S  W PPFQL+ + L S  +GP++P WL +Q  L  L LS + IS TIP  
Sbjct: 467 GNSFTLK-TSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTW 525

Query: 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN 598
                SQ+ YLNLS NQ++GQI ++  A     +DLSSN  +G LP++P+SL  LDLS +
Sbjct: 526 FWNLTSQVEYLNLSRNQLYGQIQNI-VAGPSSVVDLSSNQFTGALPIVPTSLFFLDLSRS 584

Query: 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
             S ++  F C+  +   +L VLNLGNN L+G++PDCWM+W  L FL+L  N+ TGN+P 
Sbjct: 585 SFSESVFHFFCDRPDEPKQLSVLNLGNNLLTGKVPDCWMSWQHLRFLNLENNNLTGNVPM 644

Query: 659 SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILL 718
           S+G L  L  LHLR N   G++P SLQNCT L + D+SEN F G+IP WIG+ LSG+ +L
Sbjct: 645 SMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGFSGSIPIWIGKSLSGLNVL 704

Query: 719 SLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA--KEVLEVDKFF-- 774
           +LR+N+F G  P E+C L SL+ILDL+ N L+G+IPRC +NL+ +A   E      ++  
Sbjct: 705 NLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSALADFSESFYPTSYWGT 764

Query: 775 ------EDALIVYKKKVVKYP--IGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLS 826
                 E+A++V K   ++Y   +G   ++KV+DLS N+  GEIP ++T L+ LQ+L LS
Sbjct: 765 NWSELSENAILVTKGIEMEYSRILG---FVKVMDLSCNFMYGEIPEELTGLLALQSLNLS 821

Query: 827 HNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
           +N F+GRIP N+G M  +E LDFS N+L GEIP +M NL FL   N+
Sbjct: 822 NNRFTGRIPSNIGNMAWLETLDFSMNQLDGEIPPSMTNLTFLSHLNL 868

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/890 (47%), Positives = 575/890 (64%), Gaps = 53/890 (5%)

Query: 32  AAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNP 91
             GC + ER+ALL FK DL+DPSNRLASW   G GDCC W GV+CDN+TGHV+ELRLR+ 
Sbjct: 34  TQGCSQIERDALLKFKHDLKDPSNRLASWAGFG-GDCCTWRGVICDNVTGHVIELRLRSI 92

Query: 92  SRDD-----GSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLE 146
           S  D     G+  +YE Y +  + G+INPSL+ LKHL +LDL  NDF G+QIP+F+G + 
Sbjct: 93  SFADYLASSGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQIPKFIGLIG 152

Query: 147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           +L +L++S AGF G IPH +GNLS+L +L+L  +Y     VE+  W+S LS L+ LDLS 
Sbjct: 153 SLKHLDLSDAGFAGTIPHGLGNLSDLNYLNLH-DYYSQFNVENLNWLSQLSSLEFLDLSL 211

Query: 207 VDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIV- 265
           V L    +   + N+L SL  L  S C L  + P+ + NFSSL  LD+S N   +S+I  
Sbjct: 212 VHLGNVFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVDESAISM 271

Query: 266 ----NQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFID 321
                 V  L  L+ L+L+ NNFQG +P+ +QN T L+ LDLS NHFSSS+P+W   F  
Sbjct: 272 LNFPRWVSHLKTLLSLNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPEWLYGFEH 331

Query: 322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN---RLESKIPRAFKRLRHLRSVNLSGN 378
           L+ L+L  N LQG +  ++GN+TS+ SLDLS N   + E  IP +FK+L +LR+++LS  
Sbjct: 332 LKLLNLGSNNLQGVLSSAIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLSLSNV 391

Query: 379 KLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438
           KL+Q+I++VL++   C S  +ESLDL+   LFG LTN +G F+NL  L L  N+ISG IP
Sbjct: 392 KLNQDIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSISGPIP 451

Query: 439 LSLGQLSSLRYLDVSTNNLNGTL------------------------SENHFANLTKLVG 474
           ++LG+L SLR L +S N LNGTL                        SE HFANL  L  
Sbjct: 452 MALGELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLKNLRN 511

Query: 475 FDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDT 534
           F A+GN L L+V SP W PP QL  I L S  +GPQFP+W+    HL YLD+SNSSIS T
Sbjct: 512 FSAAGNQLNLRV-SPDWIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSISST 569

Query: 535 IPDRLVKSLSQINYLNLSYNQIFGQIP---DLNDAAQLETLDLSSNSLSGPLPLIPSSLT 591
           IP        ++ YLNLS+NQI G IP    L+  A    +DLSSN   GPLP I S++ 
Sbjct: 570 IPIWFWTMSFRMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVG 629

Query: 592 TLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEND 651
            LDLS+N  SG++  FLC++++    +QVLNLG N LSG IPDCW +W +L  + L  N 
Sbjct: 630 ALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNK 689

Query: 652 FTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGER 711
            +GN+P S+G LS L+ LH+R +  SGK+P+SL+NCT+L   D++ENE VG++P WIG+R
Sbjct: 690 LSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKR 749

Query: 712 LSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVD 771
            S +++L++RAN+FHG  P ELC LASL+ILDL+ N L+  IP C N L+ MA     + 
Sbjct: 750 FSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATRNDSLG 809

Query: 772 KF--------FEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTL 823
           K         F++ L+V K KVV+Y      +++ +DLS+N   GEIP +VT L  LQ+L
Sbjct: 810 KIYLDSGSSTFDNVLLVMKGKVVEYSTILK-FVRSIDLSSNALCGEIPEEVTRLSELQSL 868

Query: 824 KLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
            LS N  +GRIP  +G+++ +E++DFS N+L GEIP++M +L FL   N+
Sbjct: 869 NLSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNL 918

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/967 (44%), Positives = 578/967 (59%), Gaps = 109/967 (11%)

Query: 5   VALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWNNIG 64
           V  + L FL+ +T  + ++  +GS  AA GC + EREAL+ FK +L+DPS RLASW    
Sbjct: 6   VTFVSLLFLIAATTFSFVH-SHGSYNAAVGCNQIEREALMKFKDELQDPSKRLASWG--A 62

Query: 65  VGDCCKWYGVVCDNITGHVLELRLR-------NPSRDDGSPAEYEAY-ERSKIVGKINPS 116
             +CC W+GV+CDN TGHV EL L+         S D      YE Y ERS   GK++ S
Sbjct: 63  DAECCTWHGVICDNFTGHVTELHLKILSSEEYYSSSDALGYYFYEEYLERSSFRGKVSQS 122

Query: 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLD 176
           LL LKHL +LDLS NDF GIQIP FLGS+E+L +LN+  AGF G IPHQ+GNLSNLQ+L+
Sbjct: 123 LLNLKHLNYLDLSNNDFGGIQIPPFLGSMESLRHLNLYGAGFGGRIPHQLGNLSNLQYLN 182

Query: 177 LRPNYL---GGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC 233
           L    +     +Y+E   W+S L  L+ LD SGVDLSK  +   + N+L SL  L  SG 
Sbjct: 183 LNAKSIYTSAVIYIESLQWLSSLRSLEFLDFSGVDLSKAFNWLDVLNTLPSLGELHLSGS 242

Query: 234 LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ 293
            L+ I  LS  NFSSL+TL++S N F    + + +  L  L  LDLS+NNF G++P  +Q
Sbjct: 243 ELYPIPLLSNVNFSSLLTLNLSANNFV---VPSWIFRLTTLATLDLSSNNFVGSIPIHLQ 299

Query: 294 NSTSLQHLDLSRNHFSSSV-------------------------PDWFNKFIDLEYLSLS 328
           N T+L+ L LS +  +SS+                         P        L  L LS
Sbjct: 300 NITTLRELYLSDSGLNSSIFNCLHGLAHLELLHLASNYNLDGKIPSTIGNLTSLRSLDLS 359

Query: 329 YNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA------------------------F 364
           +N L+  IP ++GNLTS+KSLDLS N LE  IP A                        F
Sbjct: 360 FNSLEEGIPSAIGNLTSLKSLDLSRNSLEGDIPSAIGNLASLSSLDLSRNSLEGGIPTWF 419

Query: 365 KRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLD 424
           + L +LRS+ LS NKLSQEI++V ++ S C S++LESL L ++ L G L++++  FKNL 
Sbjct: 420 RNLCNLRSLELSINKLSQEINEVFEILSGCVSDILESLILPSSQLSGHLSDRLVKFKNLA 479

Query: 425 SLDLSFNNISGHIPLSLGQL------------------------SSLRYLDVSTNNLNGT 460
            LDL+ N ISG IP +LG+L                        S L Y+D+S N+L G 
Sbjct: 480 YLDLNDNLISGPIPENLGELNFLISLDLGNNKLNGSLPIDFGMLSKLNYVDISNNSLEGE 539

Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQ-LQAIGLSSCFIGPQFPQWLLSQN 519
           +SE HFANLT L  F AS N L L+V SP W P FQ +  I L    +GPQFP W+ S  
Sbjct: 540 ISEIHFANLTNLATFKASSNQLRLRV-SPDWFPAFQRVSTISLKCWKVGPQFPTWIHSLK 598

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLN-DAAQLETLDLSSNS 578
           +L YLDLSNS+IS T+P       S++  +NLS+NQ+ G IP L+ D +    +DLSSN+
Sbjct: 599 YLAYLDLSNSTISSTLPTWFHNFSSRLYQINLSHNQMHGTIPYLSIDDSDYSLIDLSSNN 658

Query: 579 LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN 638
             G +P I S+   LDLS+N  SG++S FLC +      + VLNLG N  SGEIPDCWMN
Sbjct: 659 FGGSMPFISSNPFGLDLSNNSFSGSISSFLCYK---PRTINVLNLGENLFSGEIPDCWMN 715

Query: 639 WSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698
           W++   + L  N F+GN+P S+GTLS L +L++R N  SG++P+SL++CT L++ D+S N
Sbjct: 716 WNYTNVIRLSNNYFSGNIPESIGTLSELSVLNIRNNNLSGEMPISLKHCTSLQVLDLSGN 775

Query: 699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN 758
           E  G I TW+G+   G ++L+LR N+FHGF P ELCG+ +L ILD ++NNL G IPRCIN
Sbjct: 776 ELSGEITTWMGQHFQGTLILNLRGNKFHGFIPEELCGMTALVILDFANNNLNGTIPRCIN 835

Query: 759 NLAGM--AKEVLEVDK----------FFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYF 806
           N   +      L+  K          + E +LI    K+V+Y      +++ LD S N  
Sbjct: 836 NFTALLSGTSYLKDGKVLVDYGPTLTYSESSLIERNGKLVEYSTTLG-FVRSLDFSNNKL 894

Query: 807 SGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLE 866
           SGEIP ++T+L GL  L LSHN  +GRIP N+GAMK+++ LDFS N+L GEIP++M +L 
Sbjct: 895 SGEIPEEMTSLRGLLFLNLSHNSLTGRIPENIGAMKALQILDFSRNQLSGEIPQSMSSLT 954

Query: 867 FLEIFNI 873
           FL   N+
Sbjct: 955 FLNNLNL 961

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284745|gb|AEQ27744.1| receptor-like protein [Malus x domestica]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/887 (46%), Positives = 558/887 (62%), Gaps = 41/887 (4%)

Query: 2   SVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWN 61
           ++ V LL + FL I+TI  +I  CNG+      C ESER++LL FKQDL+DP+NRLASW 
Sbjct: 4   TMRVVLLLIRFLAIATITFSIGLCNGNPSWPPLCKESERQSLLMFKQDLKDPANRLASWV 63

Query: 62  NIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLK 121
                DCC W GVVCD++TGH+ EL L N           E Y  S   GKINPSLLGLK
Sbjct: 64  AEEDSDCCSWTGVVCDHMTGHIRELHLNNS----------EPYLESSFGGKINPSLLGLK 113

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
           HL +LDLS N+FQG QIP F GS+ +L +LN+  + F G+IPH++GNL++L++L+L   Y
Sbjct: 114 HLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLGHSEFGGVIPHKLGNLTSLRYLNLSRLY 173

Query: 182 LGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPL 241
              L VE+  W+S LSLLKHLDLS V+LSK SD   +TN L SL  L  S C LH I+PL
Sbjct: 174 --DLKVENLQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPSLVELDMSYCQLHQITPL 231

Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHL 301
              NF+SLV LD+S N F +S ++  V  L NLV L LS   FQG +P   QN TSL+ +
Sbjct: 232 PTTNFTSLVVLDLSFNSF-NSLMLRWVFSLKNLVSLHLSFCGFQGLIPSISQNITSLREI 290

Query: 302 DLSRNHFS-SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
           DLS N  S   +P W     +LE LSL  N+L G +P S+ N+T +K L+L  N   S I
Sbjct: 291 DLSHNSMSLDPIPKWLFNQKNLE-LSLEANQLTGQLPSSIQNMTGLKVLNLEVNNFNSTI 349

Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNF 420
           P     L +L S+ LS N    EIS  +    +     L   DLS+N++ G +   +GN 
Sbjct: 350 PEWLYSLNNLESLLLSYNYFCGEISSSIGNLKS-----LRHFDLSSNSISGPIPMSLGNL 404

Query: 421 KNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
            +L+ LD+S N  +G     +GQL  L  LD+S N+L G +SE  F+NLTKL  F A+GN
Sbjct: 405 SSLEKLDISGNQFNGTFIEVIGQLKMLMDLDISYNSLEGAMSEVSFSNLTKLKHFIANGN 464

Query: 481 SLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV 540
           S  LK  S  W PPFQL+ + L S  +GP++P WL +Q  L  L LS + IS TIP    
Sbjct: 465 SFTLKT-SRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTWFW 523

Query: 541 KSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFL 600
              SQ+ YLNLS NQ++GQI ++  A    T+DLSSN  +G LP++P+SL  LDLS++  
Sbjct: 524 NLTSQVEYLNLSRNQLYGQIQNI-VAVPFSTVDLSSNQFTGALPIVPTSLMWLDLSNSSF 582

Query: 601 SGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSL 660
           SG++  F C+  +   +  VL+LGNN L+G++PDCWM+WS L FL+L  N+ TGN+P S+
Sbjct: 583 SGSVFHFFCDRPDEPKQHYVLHLGNNFLTGKVPDCWMSWSSLEFLNLENNNLTGNVPMSM 642

Query: 661 GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSL 720
           G L  L  LHLR N   G++P SLQNCT L + D+SEN F G+IPTWIG  L  +++  L
Sbjct: 643 GYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGFSGSIPTWIGNSLLNVLI--L 700

Query: 721 RANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA--KEVLEVDKFF---- 774
           R+N+F G  P E+C L SL+ILDL+ N L+G+IPRC ++L+ MA   E     + F    
Sbjct: 701 RSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHDLSAMADFSESFSPTRGFGTSA 760

Query: 775 ------EDALIVYKKKVVKYP--IGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLS 826
                 ++A++V K   ++Y   +G   ++K +DLS N+  GEIP ++T L+ LQ+L LS
Sbjct: 761 HMFELSDNAILVKKGIEMEYSKILG---FVKGMDLSCNFMYGEIPEELTGLLALQSLNLS 817

Query: 827 HNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
           +N F+GRIP  +G M  +E+LDFS N+L GEIP++M NL FL   N+
Sbjct: 818 NNRFTGRIPSKIGNMAWLESLDFSMNQLDGEIPQSMTNLTFLSHLNL 864

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/915 (46%), Positives = 568/915 (62%), Gaps = 53/915 (5%)

Query: 1   MSVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASW 60
           M V V  +FL  L+ ++    +   N +      C E ER+ALL  KQDL DPS RLASW
Sbjct: 7   MKVVVTSIFLALLIETSTFEYVCAANRN----VSCPEVERQALLKLKQDLIDPSGRLASW 62

Query: 61  -NNIGVGDCCKWYGVVCDNITGHVLELRLRNP-SRDDGSPAEYEAYERSKIVGKINPSLL 118
             N+   +CC W GV+CDN+TG+V++LRLRNP    +G     EAY +    GKINPSLL
Sbjct: 63  GTNL---NCCNWSGVICDNLTGNVIQLRLRNPLDPYNGFYIPSEAYAKMWFSGKINPSLL 119

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
            LKHL +LDLS ++F GIQIP FLGS+  L YLN+S AGF G++P Q+GNL+NL  LDL 
Sbjct: 120 DLKHLRYLDLSGSNFGGIQIPEFLGSMHTLRYLNLSAAGFGGVVPPQLGNLTNLHVLDLH 179

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI 238
            ++   +Y E+  W+SHL  LKHLDLS V+LSK SD   +TN+L SL  +  SGC LH +
Sbjct: 180 -DFSSLVYAENLQWLSHLVKLKHLDLSSVNLSKASDWFQVTNTLPSLVEIHLSGCQLHRL 238

Query: 239 SPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSL 298
              +  NFSSL  LD+S N F++  I   +  L +L+ LDLS NNFQG +P  +++ +SL
Sbjct: 239 PLQADVNFSSLSILDLSSNSFSNPLIPGWIFKLNSLLSLDLSHNNFQGQLPHGLRSLSSL 298

Query: 299 QHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES 358
           ++L+L  N+F S++P W      LE+L+L  N   GSI     NLTS+ +LDLS N L  
Sbjct: 299 RYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSNYFHGSISNGFQNLTSLTTLDLSDNELTG 358

Query: 359 KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA--CASNVLESLDLSNNTLFGLLTNQ 416
            +P +   L  L+ + LSG  LS+++S++L   S+  C  N LESL L +  +FG LT++
Sbjct: 359 AVPNSMGSLCSLKKIKLSGLHLSRDLSEILQALSSPGCLLNGLESLYLDSCEIFGHLTDR 418

Query: 417 IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTL--------------- 461
           I  FKNL  L LS N+ISG IP SLG L+SLR LD+S N +NGTL               
Sbjct: 419 ILLFKNLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRVNGTLPESIGQLWKMEKLWL 478

Query: 462 ---------SENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
                    SE HFANLT+L  F ASGN LVL+  SP W PPFQL  + LSS  +GP+FP
Sbjct: 479 SHNMLEGVVSEVHFANLTRLRLFQASGNPLVLEA-SPEWVPPFQLGVMALSSWHLGPKFP 537

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINY-LNLSYNQIFGQIPD---LNDAAQ 568
            WL SQ   +YLD+S + I DT P+    +LS I + LNLS+NQI+G++P     +  A 
Sbjct: 538 SWLRSQRDFVYLDISVTGIIDTFPNWF-WNLSTIYFSLNLSHNQIYGELPHRIGTSPVAD 596

Query: 569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL 628
           L  +DLS N   GPLP + S + TLDLSSN  SG +S  LC +M     L+ L+L +N L
Sbjct: 597 LVYVDLSFNHFDGPLPCLSSKVNTLDLSSNLFSGPISNLLCCKMEEPYWLETLHLADNHL 656

Query: 629 SGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT 688
           SGEIPDCWMNW  +  + L  N  +G +P+S+G+L+ LQ LHLR N  SG +P SLQNCT
Sbjct: 657 SGEIPDCWMNWPNMVSVDLENNSLSGVIPSSMGSLNLLQSLHLRKNNLSGVLPSSLQNCT 716

Query: 689 ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748
            L   D+ EN FVGNIP WIGE+LS  I++SL +N+F G  P  LC L+ L ILDL+ NN
Sbjct: 717 SLLAIDLGENHFVGNIPGWIGEKLSDSIIISLGSNRFQGQIPDNLCSLSYLTILDLAHNN 776

Query: 749 LTGVIPRCINNLAGMAKEVLEVDKF----------FEDALIVYKKKVVKYPIGYPYYLKV 798
           L+G IP+C  NL+ MA      +             E  L++ K  +++Y       +  
Sbjct: 777 LSGTIPKCFMNLSAMAANQNSSNPISYAFGHFGTSLETLLLMIKGILLEYSSTL-QLVTS 835

Query: 799 LDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEI 858
           +DLS N  +GEIP+ +T+L+GL+ L LS+N   GRIP N+G ++ +E++D S N+L+GEI
Sbjct: 836 MDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGRIPKNIGNLRLLESIDLSRNQLRGEI 895

Query: 859 PKNMVNLEFLEIFNI 873
           P +M  L FL   N+
Sbjct: 896 PPSMSALTFLSYLNL 910

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284747|gb|AEQ27745.1| receptor-like protein [Malus x domestica]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/889 (46%), Positives = 553/889 (62%), Gaps = 43/889 (4%)

Query: 2   SVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWN 61
           ++ V LL +  L I+TI   I  CNG       C ESER+ALL FKQDLEDP NRL+SW 
Sbjct: 4   TMRVVLLLIRVLAIATITFRIGLCNGIPGWPPLCKESERQALLMFKQDLEDPGNRLSSWV 63

Query: 62  NIGVGDCCKWYGVVCDNITGHVLELRLR--NPSRDDGSPAEYEAYERSKIVGKINPSLLG 119
                DCC W GVVCD+ITGH+ EL L   +   D GS             GKINPSLL 
Sbjct: 64  AEEGSDCCSWTGVVCDHITGHIHELHLNISDSVWDFGS----------LFGGKINPSLLS 113

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRP 179
           LKHL +LDLS N+FQG QIP F GS+ +L +LN+  + F G+IPH++GNL++L++L+L  
Sbjct: 114 LKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLGHSEFGGVIPHKLGNLTSLRYLNLSR 173

Query: 180 NYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHIS 239
            Y   L VE+  W+S LSLLKHLDLS V+LSK SD   +TN L SL  L  S C LH I+
Sbjct: 174 LY--DLKVENLQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPSLVELDMSYCQLHQIT 231

Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299
           PL   NF+SLV LD+S N F +S ++  V  L NLV L LS   FQG +P   QN TSL+
Sbjct: 232 PLPTTNFTSLVVLDLSFNSF-NSLMLRWVFSLKNLVSLHLSFCGFQGLIPSISQNITSLR 290

Query: 300 HLDLSRNHFS-SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES 358
            +DLS N  S   +P W     +LE LSL  N+L G +P S+ N+T +K L+L  N   S
Sbjct: 291 EIDLSHNSMSLDPIPKWLFNQKNLE-LSLEANQLTGQLPSSIQNMTGLKVLNLEVNNFNS 349

Query: 359 KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG 418
            IP     L +L S+ LS N    EIS  +    +     L   DLS+N++ G +   +G
Sbjct: 350 TIPEWLYSLNNLESLLLSYNYFCGEISSSIGNLKS-----LRHFDLSSNSISGPIPMSLG 404

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
           N  +L+ LD+S N  +G     +GQL  L  LD+S N+L G +SE  F+NLTKL  F A+
Sbjct: 405 NLSSLEKLDISGNQFNGTFIEVIGQLKMLMDLDISYNSLEGAMSEVSFSNLTKLKHFIAN 464

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDR 538
           GNS  LK  S  W PPFQL+ + L S  +GP++P WL +Q  L  L LS + IS TIP  
Sbjct: 465 GNSFTLKT-SRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTW 523

Query: 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN 598
                SQ+ YLNLS NQ++GQI ++  A    T+DLSSN  +G LP++P+SL  LDLS++
Sbjct: 524 FWNLTSQVEYLNLSRNQLYGQIQNI-VAVPFSTVDLSSNQFTGALPIVPTSLMWLDLSNS 582

Query: 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
             SG++  F C+  +   +  VL+LGNN L+G++PDCWM+WS L FL+L  N+ TGN+P 
Sbjct: 583 SFSGSVFHFFCDRPDEPKQHYVLHLGNNFLTGKVPDCWMSWSSLEFLNLENNNLTGNVPM 642

Query: 659 SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILL 718
           S+G L  L  LHLR N   G++P SLQNCT L + D+SEN F G+IPTWIG  L  +++ 
Sbjct: 643 SMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGFSGSIPTWIGNSLLNVLI- 701

Query: 719 SLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA--KEVLEVDKFF-- 774
            LR+N+F G  P E+C L SL+ILDL+ N L+G+IPRC ++L+ MA   E     + F  
Sbjct: 702 -LRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHDLSAMADFSESFSPTRGFGT 760

Query: 775 --------EDALIVYKKKVVKYP--IGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLK 824
                   ++A++V K   ++Y   +G   ++K +DLS N+  GEIP ++T L+ LQ+L 
Sbjct: 761 SAHMFELSDNAILVKKGIEMEYSKILG---FVKGMDLSCNFMYGEIPEELTGLLALQSLN 817

Query: 825 LSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
           LS+N F+GRIP  +G M  +E+LDFS N+L GEIP++M NL FL   N+
Sbjct: 818 LSNNRFTGRIPSKIGNMAWLESLDFSMNQLDGEIPQSMTNLTFLSHLNL 866

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284771|gb|AEQ27757.1| receptor-like protein [Malus x domestica]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/889 (46%), Positives = 552/889 (62%), Gaps = 43/889 (4%)

Query: 2   SVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWN 61
           ++ V LL +  L I+TI   I  CNG       C ESER+ALL FKQDLEDP NRL+SW 
Sbjct: 4   TMRVVLLLIRVLAIATITFRIGLCNGIPGWPPLCKESERQALLMFKQDLEDPGNRLSSWV 63

Query: 62  NIGVGDCCKWYGVVCDNITGHVLELRLR--NPSRDDGSPAEYEAYERSKIVGKINPSLLG 119
                DCC W GVVCD+ITGH+ EL L   +   D GS             GKINPSLL 
Sbjct: 64  AEEGSDCCSWTGVVCDHITGHIHELHLNISDSVWDFGS----------LFGGKINPSLLS 113

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRP 179
           LKHL +LDLS N+FQG QIP F GS+ +L +LN+  + F G+IPH++GNL++L++L+L  
Sbjct: 114 LKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLGHSEFGGVIPHKLGNLTSLRYLNLSR 173

Query: 180 NYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHIS 239
            Y   L VE+  W+S LSLLKHLDLS V+LSK SD   +TN L SL  L  S C LH I+
Sbjct: 174 LY--DLKVENLQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPSLVELDMSYCQLHQIT 231

Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299
           PL   NF+SLV LD+S N F +S ++  V  L NLV L LS   FQG +P   QN TSL+
Sbjct: 232 PLPTTNFTSLVVLDLSFNSF-NSLMLRWVFSLKNLVSLHLSFCGFQGLIPSISQNITSLR 290

Query: 300 HLDLSRNHFS-SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES 358
            +DLS N  S   +P W     +LE LSL  N+  G +P S+ N+T +K L+L  N   S
Sbjct: 291 EIDLSHNSMSLDPIPKWLFNQKNLE-LSLEANQFTGQLPSSIQNMTGLKVLNLEVNNFNS 349

Query: 359 KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG 418
            IP     L +L S+ LS N    EIS  +    +     L   DLS+N++ G +   +G
Sbjct: 350 TIPEWLYSLNNLESLLLSYNYFCGEISSSIGNLKS-----LRHFDLSSNSISGPIPMSLG 404

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
           N  +L+ LD+S N  +G     +GQL  L  LD+S N+L G +SE  F+NLTKL  F A+
Sbjct: 405 NLSSLEKLDISGNQFNGTFIEVIGQLKMLMDLDISYNSLEGAMSEVSFSNLTKLKHFIAN 464

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDR 538
           GNS  LK  S  W PPFQL+ + L S  +GP++P WL +Q  L  L LS + IS TIP  
Sbjct: 465 GNSFTLKT-SRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTW 523

Query: 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN 598
                SQ+ YLNLS NQ++GQI ++  A    T+DLSSN  +G LP++P+SL  LDLS++
Sbjct: 524 FWNLTSQVEYLNLSRNQLYGQIQNI-VAVPFSTVDLSSNQFTGALPIVPTSLMWLDLSNS 582

Query: 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
             SG++  F C+  +   +  VL+LGNN L+G++PDCWM+WS L FL+L  N+ TGN+P 
Sbjct: 583 SFSGSVFHFFCDRPDEPKQHYVLHLGNNFLTGKVPDCWMSWSSLEFLNLENNNLTGNVPM 642

Query: 659 SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILL 718
           S+G L  L  LHLR N   G++P SLQNCT L + D+SEN F G+IPTWIG  L  +++ 
Sbjct: 643 SMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGFSGSIPTWIGNSLLNVLI- 701

Query: 719 SLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA--KEVLEVDKFF-- 774
            LR+N+F G  P E+C L SL+ILDL+ N L+G+IPRC ++L+ MA   E     + F  
Sbjct: 702 -LRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHDLSAMADFSESFSPTRGFGT 760

Query: 775 --------EDALIVYKKKVVKYP--IGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLK 824
                   ++A++V K   ++Y   +G   ++K +DLS N+  GEIP ++T L+ LQ+L 
Sbjct: 761 SAHMFELSDNAILVKKGIEMEYSKILG---FVKGMDLSCNFMYGEIPEELTGLLALQSLN 817

Query: 825 LSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
           LS+N F+GRIP  +G M  +E+LDFS N+L GEIP++M NL FL   N+
Sbjct: 818 LSNNRFTGRIPSKIGNMAWLESLDFSMNQLDGEIPQSMTNLTFLSHLNL 866

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284741|gb|AEQ27742.1| receptor-like protein [Malus x domestica]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/888 (45%), Positives = 551/888 (62%), Gaps = 37/888 (4%)

Query: 2   SVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWN 61
           S+ V LL +  L I+TI   I  CNG       C ESER+ALL FKQDLEDP+NRL+SW 
Sbjct: 4   SMRVVLLLIRVLAIATITFGIGLCNGIPGWPPLCKESERQALLMFKQDLEDPANRLSSWV 63

Query: 62  NIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLK 121
                DCC W GVVCD ITGH+ EL L N S  DG    Y ++      GKINPSLL LK
Sbjct: 64  AEEGSDCCSWTGVVCDRITGHIHELHL-NSSYSDG--VFYASFG-----GKINPSLLSLK 115

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
           H   LDLS NDF   +IP F GS+ +L +LN+  + F G+IPH++GNLS+L++L+L   +
Sbjct: 116 HPNFLDLSNNDFSTTRIPSFFGSMTSLTHLNLGNSAFGGVIPHKLGNLSSLRYLNLS-TF 174

Query: 182 LGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPL 241
              L VE+  W+S LSLLKHLDL  V+LSK SD   +TN+L SL  L  S C L  I PL
Sbjct: 175 HSNLKVENLQWISGLSLLKHLDLGYVNLSKASDWLQVTNTLPSLVELIMSDCELDQIPPL 234

Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHL 301
              NF+SLV LD+S N F +S +   V  + NLV L LS   F G +P + QN TSL+ +
Sbjct: 235 PTTNFTSLVILDLSGNSF-NSLMPRWVFSIKNLVSLHLSFCGFHGPIPGSSQNITSLREI 293

Query: 302 DLSRNHFS-SSVPDWF--NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES 358
           DLS N  S   +P W+   KF++   LSL  N+L G +P S+ N+TS+ SL+L  N   S
Sbjct: 294 DLSSNSISLDPIPKWWFNQKFLE---LSLEANQLTGQLPSSIQNMTSLTSLNLGGNEFNS 350

Query: 359 KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG 418
            IP     L +L S+ L GN L  EIS  +    +     L   DLS N++ G +   +G
Sbjct: 351 TIPEWLYSLNNLESLLLYGNALRGEISSSIGNLKS-----LRHFDLSGNSISGPIPMSLG 405

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
           N  +L  LD+S N  +G +   +G+L  L  LD+S N+L G +SE  F+NL KL  F A 
Sbjct: 406 NLSSLVELDISGNQFNGTLIEVIGELKMLTDLDISYNSLEGVVSEVIFSNLKKLKFFSAQ 465

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDR 538
            NSL LK  S  W PPFQL+++ L S  +GP++P WL  Q  L  L LS + IS TIP  
Sbjct: 466 DNSLTLK-TSRGWLPPFQLESLQLDSWRLGPEWPMWLQKQTQLKKLSLSGTRISSTIPTW 524

Query: 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN 598
                 Q++YLNLS+NQ++G+I ++  AA +   DL SN  +G LP++P+SL  LDLS++
Sbjct: 525 FWNLTFQLDYLNLSHNQLYGEIQNI-VAAPVSVADLGSNQFTGALPIVPTSLDRLDLSNS 583

Query: 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
             SG++  F C   +   +L +L+L NN L+G++PDCWMNW  L FLHL  N+ TGN+P 
Sbjct: 584 SFSGSVFHFFCGRRDEPYQLSILHLENNHLTGKVPDCWMNWPSLGFLHLENNNLTGNVPM 643

Query: 659 SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILL 718
           S+G L +LQ LHLR N   G++P SL+NCT L + D+S N FVG+IP W+G+ LS + +L
Sbjct: 644 SMGYLLNLQSLHLRNNHLYGELPHSLENCTMLSVVDLSGNGFVGSIPIWMGKSLSELQVL 703

Query: 719 SLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA--KEVLEVDKF--- 773
           +LR+N+F G  P E+C L SL+ILDL+ N L+G IPRC +NL+ MA   E +    F   
Sbjct: 704 NLRSNEFEGDIPSEICYLKSLQILDLARNKLSGTIPRCFHNLSAMADLSESVWPTMFSQS 763

Query: 774 --------FEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKL 825
                    E+A++V K + ++Y      ++K +DLS N+  GEIP ++T+L+ LQ+L L
Sbjct: 764 DGIMEFTNLENAVLVTKGREMEYS-KILEFVKFMDLSCNFMYGEIPEELTDLLALQSLNL 822

Query: 826 SHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
           S+N F+GRIP  +G M  +E+LDFS N+L GEIP++M NL FL   N+
Sbjct: 823 SNNRFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNL 870

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284739|gb|AEQ27741.1| receptor-like protein [Malus x domestica]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/886 (46%), Positives = 560/886 (63%), Gaps = 37/886 (4%)

Query: 2   SVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWN 61
           ++ V LL + FL  +TI  +   CNG+      C ESER ALL FKQDL+DP+NRLASW 
Sbjct: 4   TMRVVLLLIRFLAFATITFSFGLCNGNPGWPPLCKESERRALLMFKQDLKDPANRLASWV 63

Query: 62  NIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLK 121
                DCC W  VVCD++TGH+ EL L +   D     E+ ++      GKINPSLL LK
Sbjct: 64  AEEDSDCCSWTRVVCDHVTGHIHELHLNSFDSD----WEFNSF----FGGKINPSLLSLK 115

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
           HL +LDLS N+FQG QIP F GS+ +L +LN++ + + GIIPH++GNL++L++L+L  + 
Sbjct: 116 HLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLAHSWYGGIIPHKLGNLTSLRYLNL--SS 173

Query: 182 LGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPL 241
           L  L VE+  W+S LSLLKHLDLS V+LSK SD   +TN L SL  L  S C L  I PL
Sbjct: 174 LDDLKVENPQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPSLVELIMSRCQLDQIPPL 233

Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHL 301
              NF+SLV LD+S N F +S +   V  L NLV L LS   FQG +P   QN TSL+ +
Sbjct: 234 PTPNFTSLVVLDLSRNSF-NSLMPRWVFSLKNLVSLHLSFCGFQGPIPSISQNITSLREI 292

Query: 302 DLSRNHFS-SSVPDW-FNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK 359
           DLS N  S   +P W FN+ I LE LSL  N+L G +P S+ N+T +K L+L  N   S 
Sbjct: 293 DLSFNSISLDPIPKWLFNQKI-LE-LSLESNQLTGQLPSSIQNMTGLKVLNLEGNDFNST 350

Query: 360 IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGN 419
           IP     L +L S+ LS N    EIS  +    +     L   DLS+N++ G +   +GN
Sbjct: 351 IPEWLYSLNNLESLLLSYNYFCGEISSSIGNLKS-----LRHFDLSSNSISGPIPMSLGN 405

Query: 420 FKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASG 479
             +L+ LD+S N ++G     +GQL  L  LD+S N+L G +SE  F+NLTKL  F A+G
Sbjct: 406 LSSLEKLDISGNQLNGTFIEVIGQLKMLMDLDISYNSLEGAMSEVSFSNLTKLKHFIANG 465

Query: 480 NSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRL 539
           NS  LK  S  W PPFQL+ + L S  +GP++P WL +Q  L  L LS + IS TIP   
Sbjct: 466 NSFTLKT-SRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTWF 524

Query: 540 VKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF 599
               SQ+ YLNLS NQ++GQI ++  A    T+DLSSN  +G LP++P+SL  LDLS++ 
Sbjct: 525 WNLTSQVEYLNLSRNQLYGQIQNI-VAVPFSTVDLSSNQFTGALPIVPTSLMWLDLSNSS 583

Query: 600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTS 659
            SG++  F C+  +   +L +L+LGNN+L+G++PDCWM+W  L FL+L  N+ TGN+P S
Sbjct: 584 FSGSVFHFFCDRPDEPRKLGILHLGNNSLTGKVPDCWMSWQSLSFLNLENNNLTGNVPMS 643

Query: 660 LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLS 719
           +G L  +Q L+LR N   G++P SLQNCT L + D+SEN F G+IPTWIG+ LS + +L 
Sbjct: 644 MGYLLYIQSLYLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPTWIGKSLSLLNVLI 703

Query: 720 LRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA--KEVLEVDKFF--- 774
           LR+N+F G  P E+C L SL+ILDL+ N L+G+IPRC +NL+ +A   E      ++   
Sbjct: 704 LRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSALANFSESFSPTSYWGEV 763

Query: 775 -----EDALIVYKKKVVKYP--IGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSH 827
                E+A++V K   ++Y   +G   ++K +DLS N+  GEIP ++T L+ LQ+L LS+
Sbjct: 764 ASGLTENAILVTKGIEMEYSTILG---FVKGMDLSCNFMYGEIPEELTGLLALQSLNLSN 820

Query: 828 NFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
           N F+GRIP  +G M  +E+LDFS N+L GEIP +M  L FL   N+
Sbjct: 821 NRFTGRIPSKIGNMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNL 866

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/941 (43%), Positives = 560/941 (59%), Gaps = 80/941 (8%)

Query: 2   SVGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWN 61
           S+ V LL + FL I+TI  +I   NG+      C ESER+ALL FKQDL DP+N+LASW 
Sbjct: 4   SMRVVLLLIRFLAIATITFSIGLSNGNPGWPPLCKESERQALLMFKQDLNDPANQLASWV 63

Query: 62  NIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGS-----PAEYEAYERSKIVGKINPS 116
                DCC W  VVCD++TGH+ EL L      DGS        ++    S   GKINPS
Sbjct: 64  AEEGSDCCSWTRVVCDHMTGHIQELHL------DGSYFHPYSDPFDLDSDSCFSGKINPS 117

Query: 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLD 176
           LL LKHL +LDLS N+FQG QIP F GS+ +L +LN++ + F GIIPH++GNLS+L++L+
Sbjct: 118 LLSLKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLAYSEFYGIIPHKLGNLSSLRYLN 177

Query: 177 LRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH 236
           L  +    L VE+  W+S LSLLKHLDLS V+LSK SD   +TN L SL  L  S C LH
Sbjct: 178 LSSSNGFNLKVENLQWISGLSLLKHLDLSFVNLSKASDWLQVTNMLPSLVELDMSNCQLH 237

Query: 237 HISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNST 296
            I+PL   NF+SLV LD+S N+F +S +   V  + NLV L L    FQG +P   QN T
Sbjct: 238 QITPLPTTNFTSLVVLDLSGNRF-NSLMPMWVFSIKNLVSLRLIYCWFQGPIPSISQNIT 296

Query: 297 SLQHLDLSRNHFS-SSVPDWFNKFIDLEYLSLSYNELQGSIPGSL--------------- 340
           SL+ +DLS N  S   +P W     DL  LSL  N+L G +P S+               
Sbjct: 297 SLREIDLSLNSISLDPIPKWLFNQKDLA-LSLESNQLTGQLPSSIQNMTGLKVLNLGSND 355

Query: 341 ---------------------------------GNLTSIKSLDLSFNRLESKIPRAFKRL 367
                                            GN+TS+ +L L  N LE KIP +   L
Sbjct: 356 FNSTIPEWLYSLNNLESLLLSSNALRGEISSSIGNMTSLVNLHLDNNLLEGKIPNSLGHL 415

Query: 368 RHLRSVNLSGNKLS-QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSL 426
             L+ ++LS N  + Q  S + +  S C  N ++SL L    + G +   +GN  +L+ L
Sbjct: 416 CKLKDLDLSKNHFTVQRPSVIFESLSRCGPNGIKSLSLRYTNISGPIPMSLGNLSSLEKL 475

Query: 427 DLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKV 486
           D+S N  +G     +GQL  L  LD+S N+L   +SE  F+NLTKL  F A+GNS  LK 
Sbjct: 476 DISGNQFNGTFTEVIGQLKMLTDLDISNNSLEDAVSEVSFSNLTKLKHFIANGNSFTLKT 535

Query: 487 VSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQI 546
            S  W PPFQL+ + L S  +GP++P WL +Q  L  L LS + IS T+P       S++
Sbjct: 536 -SRDWVPPFQLEILQLDSWHLGPEWPMWLRTQTQLTRLSLSCTGISSTVPTWFWNLTSKV 594

Query: 547 NYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSR 606
            YLNLS+NQ++GQI ++  A  +  +DLSSN  +G LP++P+SL  LDLS++  SG++  
Sbjct: 595 RYLNLSHNQLYGQIQNI-VAGPMSVVDLSSNHFTGALPIVPTSLFWLDLSNSSFSGSVFH 653

Query: 607 FLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSL 666
           F C+  +   +L  L+LGNN LSG++PDCWM+W +L FL+L  N+ TGN+P S+G L  L
Sbjct: 654 FFCDRPDEPRQLHFLHLGNNLLSGKVPDCWMSWQYLSFLNLENNNLTGNVPMSMGYLDWL 713

Query: 667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFH 726
           + LHLR N   G++P SLQNCT L + D+ EN F G+IP WIG+ LS + +L+LR+N+F 
Sbjct: 714 ESLHLRNNHLYGELPHSLQNCTRLSVVDLGENGFSGSIPIWIGKSLSELQILNLRSNKFE 773

Query: 727 GFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA--KEVLEVDKFF---------- 774
           G  P E+C L SL+ILDL+ N L+G+IPRC +NL+ MA   E  +   +           
Sbjct: 774 GDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSAMADFSESRDASVYVILNGISVPLS 833

Query: 775 --EDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG 832
               A++V K + ++Y      ++K +DLS N+  GEIP ++T+L+ L++L LS+N F+G
Sbjct: 834 VTAKAILVTKGREMEYG-KILKFVKFMDLSCNFMYGEIPEELTDLLALKSLNLSNNHFTG 892

Query: 833 RIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
           RIP  +G M  +E+LDFS N+L GEIP++M NL FL   N+
Sbjct: 893 RIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNL 933

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	873
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.951	0.918	0.314	2.3e-101
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.719	0.643	0.318	1.8e-76
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.728	0.664	0.294	7.4e-76
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.836	0.583	0.286	9.3e-55
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.810	0.566	0.291	9.7e-65
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.734	0.790	0.280	5.4e-63
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.814	0.723	0.267	4.8e-57
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.800	0.586	0.296	1.7e-55
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.754	0.840	0.279	1.7e-60
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.718	0.722	0.302	1.9e-60

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 280/889 (31%), Positives = 436/889 (49%)

Query:     9 FLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDC 68
             F+ FL++  +  N+N+  GS+ A+  CI +ER+ALL+F+  L D S+RL SW+     DC
Sbjct:    10 FISFLILILLLKNLNY--GSA-ASPKCISTERQALLTFRAALTDLSSRLFSWSG---PDC 63

Query:    69 CKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSXXXXXXXXXXXX 128
             C W GV+CD  T HV+++ LRNPS+D  S    + Y+R  + GKI+PS            
Sbjct:    64 CNWPGVLCDARTSHVVKIDLRNPSQDVRS----DEYKRGSLRGKIHPSLTQLKFLSYLDL 119

Query:   129 SYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLG----- 183
             S NDF  ++IP F+G + +L YLN+S + F G IP  +GNLS L+ LDL     G     
Sbjct:   120 SSNDFNELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTL 179

Query:   184 GLYVEDFGWVXXXXXXXXXXXXG-VDLSKTSDGPLITNS-LHSLETLRFSGCLLHHISPL 241
              L   +  W+            G V+LS   +  L   S + +L+ L      L ++ P 
Sbjct:   180 SLRASNLRWLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRISALKELHLFNSELKNLPPT 239

Query:   242 --SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299
               S A+   L  LD+S+N   +S I N + GL NL  L L  +  QG++P   +N   L+
Sbjct:   240 LSSSADLKLLEVLDLSENSL-NSPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLE 298

Query:   300 HLDLSRN-HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLT-----SIKSLDLSF 353
              LDLS N      +P        L++L LS NEL G I G L   +     S+  LDLS 
Sbjct:   299 TLDLSNNLALQGEIPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSS 358

Query:   354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEI-SQVLDMFSACASNVLESLDLSNNTLFGL 412
             N+L   +P +   LR+L++++LS N  +  + S + +M S      L+ LDLSNN + G 
Sbjct:   359 NKLAGTLPESLGSLRNLQTLDLSSNSFTGSVPSSIGNMAS------LKKLDLSNNAMNGT 412

Query:   413 LTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGTLSE--NHFANL 469
             +   +G    L  L+L  N   G +  S    L SL+ + ++T      + +  + +   
Sbjct:   413 IAESLGQLAELVDLNLMANTWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPP 472

Query:   470 TKLVGFDASGNSLVLKVVSPSWTP-PFQLQAIGLSSCFIGPQFPQ-WLLS-QNHLIYLDL 526
              +L         + L    P W     +L  + L +  I    P  W     + + YL L
Sbjct:   473 FRLELIQIENCRIGL---FPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLIL 529

Query:   527 SNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLN-DAAQLETXXXXXXXXXXXXXX 585
             +N+ I   +P +L  +  ++N ++LS N   G  P  + +A +L                
Sbjct:   530 ANNRIKGRLPQKL--AFPKLNTIDLSSNNFEGTFPLWSTNATELRLYENNFSGSLPQNID 587

Query:   586 XXX-XXXXXXXXXXXXXGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF 644
                              G +   LC E++    LQ+L+L  N  SG  P CW     L+ 
Sbjct:   588 VLMPRMEKIYLFSNSFTGNIPSSLC-EVSG---LQILSLRKNHFSGSFPKCWHRQFMLWG 643

Query:   645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
             + + EN+ +G +P SLG L SL +L L  N   GKIP SL+NC+ L   D+  N+  G +
Sbjct:   644 IDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKL 703

Query:   705 PTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA 764
             P+W+G +LS + +L L++N F G  P +LC + +L+ILDLS N ++G IP+CI+NL  +A
Sbjct:   704 PSWVG-KLSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIA 762

Query:   765 KEVLEVDKFFEDALXXXXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLK 824
             +     ++ F++ +                    ++LS N  SGEIP ++  L+ L+ L 
Sbjct:   763 RGTN--NEVFQNLVFIVTRAREYEAIANS-----INLSGNNISGEIPREILGLLYLRILN 815

Query:   825 LSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
             LS N  +G IP  +  +  +E LD S N+  G IP++   +  L+  N+
Sbjct:   816 LSRNSMAGSIPEKISELSRLETLDLSKNKFSGAIPQSFAAISSLQRLNL 864

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
 Identities = 212/666 (31%), Positives = 304/666 (45%)

Query:   206 GVDLSKTSDGPLITNSLHSL---ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADS 262
             G+  ++TS G +I  S+      E+   +  LLH    L   N S  +  + +   F D 
Sbjct:    71 GLKCNQTS-GRIIELSIGQTNFKESSLLNLSLLHPFEELRSLNLSGEIYNEFN-GLFDDV 128

Query:   263 SIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP-DWFNKFID 321
                  +  L NL  LDLS+N+F  ++   +  +TSL  L +  N+    +P         
Sbjct:   129 EGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIKELKNLTK 188

Query:   322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP-RAFKRLRHLRSVNLSGNKL 380
             LE L LS +   GSIP    +L  +K+LDLS N   S +  +  K L +L  + L+ N L
Sbjct:   189 LELLDLSRSGYNGSIP-EFTHLEKLKALDLSANDFSSLVELQELKVLTNLEVLGLAWNHL 247

Query:   381 SQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440
                I +  ++F  C    L  LDL  N   G L   +GN   L  LDLS N +SG++P S
Sbjct:   248 DGPIPK--EVF--CEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS 303

Query:   441 LGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPS-WTPPFQLQA 499
                L SL YL +S NN  G  S N  ANLTKL  F  S  S +L+V + S W P FQL  
Sbjct:   304 FNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTV 363

Query:   500 IGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ--IF 557
               L  C +G + P +L+ Q +L  +DLS++ +S  IP  L+++  ++  L L  N   IF
Sbjct:   364 AALPFCSLG-KIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFTIF 422

Query:   558 GQIPDLNDAAQ-LE-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNS 615
              QIP +    Q L+ +                              G L   +  EMN+ 
Sbjct:   423 -QIPTIVHKLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSM-GEMND- 479

Query:   616 MRLQVLNLGNNTLSGEIPDCWMNWSF-LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN 674
               +  L+L  N  SGE+P   +   F L  L L  N F+G +      L+SL +L +  N
Sbjct:   480 --ISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNN 537

Query:   675 RFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELC 734
              F+G+I V L+    L +FD S N   G I + I    S +I+L L  N   G  PP L 
Sbjct:   538 LFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLL 597

Query:   735 GLASLKILDLSSNNLTGVIPRCI-NNLAGMAKEVLEVDKFFEDALXXXXXXXXXXXXXXX 793
              +  L  LDLS N L+G +P  + N++ G+  ++   +  F   L               
Sbjct:   598 AIHHLNFLDLSGNLLSGDLPSSVVNSMYGI--KIFLHNNSFTGPLPVTLLENAY------ 649

Query:   794 XXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNR 853
                 +LDL  N  SG IP Q  N   + TL L  N  +G IP  +  + S+  LD S N+
Sbjct:   650 ----ILDLRNNKLSGSIP-QFVNTGKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNK 704

Query:   854 LQGEIP 859
             L G IP
Sbjct:   705 LNGVIP 710

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 7.4e-76, Sum P(2) = 7.4e-76
 Identities = 203/690 (29%), Positives = 308/690 (44%)

Query:    35 CIESEREALLSFKQDLE--DPS------------NRLASWNNIGVGDCCKWYGVVCDNIT 80
             C   +R+ALL+FK + E   PS             +  SW N    DCC W GV C+  +
Sbjct:    37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNS--DCCNWEGVTCNAKS 94

Query:    81 GHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSXXXXXXXXXXXXSYNDFQGIQIPR 140
             G V+EL L   S        + +          N S            S+NDF+G QI  
Sbjct:    95 GEVIELDLSCSSLH----GRFHS----------NSSIRNLHFLTTLDLSFNDFKG-QITS 139

Query:   141 FLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXXX 200
              + +L +L YL++S   F G I + IGNLS L +L+L  N   G        +       
Sbjct:   140 SIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLD 199

Query:   201 XXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFA 260
                        +S G L   +  SL + +FSG +     P S  N S+L TLD+S+N F+
Sbjct:   200 LSYNRFFGQFPSSIGGLSHLTTLSLFSNKFSGQI-----PSSIGNLSNLTTLDLSNNNFS 254

Query:   261 DSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFI 320
                I + +  L  L FL L +NNF G +P +  N   L  L +  N  S + P+      
Sbjct:   255 -GQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLT 313

Query:   321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
              L  LSLS N+  G++P ++ +L+++   D S N      P     +  L  + L+GN+L
Sbjct:   314 GLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQL 373

Query:   381 SQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440
                +       S+  SN+ E LD+ NN   G + + I     L  LD+S  N  G +  S
Sbjct:   374 KGTLE--FGNISS-PSNLYE-LDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQGPVDFS 429

Query:   441 L-GQLSSLRYLDVSTNNLNGTLSENHFANLTK-LVGFDASGNSLVLKVVSPSWTPPFQL- 497
             +   L SL  L++S  N    +  N+F +  K L+  D SGN +     S    PP QL 
Sbjct:   430 IFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLI 489

Query:   498 QAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIF 557
             Q++ LS C I  +FP+++ +Q+ L +LD+SN+ I   +PD L + L  + Y+NLS N + 
Sbjct:   490 QSLYLSGCGI-TEFPEFVRTQHELGFLDISNNKIKGQVPDWLWR-LPILYYVNLSNNTLI 547

Query:   558 G-QIPDLNDAAQLETXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXGTLSRFLCNEMNN 614
             G Q P   + + L                                  G++ R +   + +
Sbjct:   548 GFQRPSKPEPSLLYLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFNGSIPRCM-GHLKS 606

Query:   615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN 674
             +  L VLNL  N LSG +P     +  L  L +G N   G LP SL   S+L++L++  N
Sbjct:   607 T--LSVLNLRQNHLSGGLPK--QIFEILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESN 662

Query:   675 RFSGKIPVSLQNCTELRLFDISENEFVGNI 704
             R +   P  L +  +L++  +  N F G I
Sbjct:   663 RINDTFPFWLSSLPKLQVLVLRSNAFHGPI 692

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 9.3e-55, P = 9.3e-55
 Identities = 222/775 (28%), Positives = 338/775 (43%)

Query:   109 IVGKINPSXXXXXXXXXXXXSYNDFQGIQIPRFLGSLEN-LMYLNISRAGFVGIIPHQIG 167
             + G I+PS            S N   G  IP  L +L + L  L++      G IP Q+G
Sbjct:    83 LTGSISPSIGRFNNLIHIDLSSNRLVG-PIPTTLSNLSSSLESLHLFSNLLSGDIPSQLG 141

Query:   168 NLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXXXXXXXXGVDLSKTSDGPLITNSLHSLET 227
             +L NL+ L L  N L G   E FG +               L  +  G L+      L+T
Sbjct:   142 SLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLV-----QLQT 196

Query:   228 LRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGA 287
             L      L    P    N +SL     + N+  + S+  ++  L NL  L+L  N+F G 
Sbjct:   197 LILQDNELEGPIPAEIGNCTSLALFAAAFNRL-NGSLPAELNRLKNLQTLNLGDNSFSGE 255

Query:   288 VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
             +P  + +  S+Q+L+L  N     +P    +  +L+ L LS N L G I      +  ++
Sbjct:   256 IPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLE 315

Query:   348 SLDLSFNRLESKIPRAF-KRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
              L L+ NRL   +P+        L+ + LS  +LS EI   +   S C S  L+ LDLSN
Sbjct:   316 FLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEI---SNCQS--LKLLDLSN 370

Query:   407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTL-SENH 465
             NTL G + + +     L +L L+ N++ G +  S+  L++L+   +  NNL G +  E  
Sbjct:   371 NTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIG 430

Query:   466 FANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLD 525
             F    +++    +  S  + V   + T   +LQ I      +  + P  +     L  L 
Sbjct:   431 FLGKLEIMYLYENRFSGEMPVEIGNCT---RLQEIDWYGNRLSGEIPSSIGRLKDLTRLH 487

Query:   526 LSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-LNDAAQLETXXXXXXXXXXX-- 582
             L  + +   IP  L  +  Q+  ++L+ NQ+ G IP        LE              
Sbjct:   488 LRENELVGNIPASL-GNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLP 546

Query:   583 -XXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSF 641
                                 G++S  LC    +S  L   ++  N   G+IP      + 
Sbjct:   547 DSLINLKNLTRINFSSNKFNGSISP-LCG---SSSYLS-FDVTENGFEGDIPLELGKSTN 601

Query:   642 LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFV 701
             L  L LG+N FTG +P + G +S L +L +  N  SG IPV L  C +L   D++ N   
Sbjct:   602 LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLS 661

Query:   702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLA 761
             G IPTW+G +L  +  L L +N+F G  P E+  L ++  L L  N+L G IP+ I NL 
Sbjct:   662 GVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQ 720

Query:   762 GMAKEVLE--------------VDKFFEDALXXXXXXXXX-XXXXXXXXLK-VLDLSANY 805
              +    LE              + K FE  L                  L+  LDLS N 
Sbjct:   721 ALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNN 780

Query:   806 FSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPK 860
             F+G IPS ++ L  L++L LSHN   G +P  +G MKS+  L+ S N L+G++ K
Sbjct:   781 FTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK 835

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.7e-65, P = 9.7e-65
 Identities = 223/765 (29%), Positives = 350/765 (45%)

Query:   138 IPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXX 197
             I  + G  +NL++L++S    VG IP  + NL++L+ L L  N L G      G      
Sbjct:    87 ISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLG----SL 142

Query:   198 XXXXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDN 257
                     G D     D P    +L +L+ L  + C L    P        + +L + DN
Sbjct:   143 VNIRSLRIG-DNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDN 201

Query:   258 QFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN 317
              + +  I  ++    +L     + N   G +P  +    +L+ L+L+ N  +  +P    
Sbjct:   202 -YLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLG 260

Query:   318 KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG 377
             +   L+YLSL  N+LQG IP SL +L ++++LDLS N L  +IP  F  +  L  + L+ 
Sbjct:   261 EMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLAN 320

Query:   378 NKLSQEISQVLDMFSACASNV-LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436
             N LS  + +     S C++N  LE L LS   L G +  ++   ++L  LDLS N+++G 
Sbjct:   321 NHLSGSLPK-----SICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGS 375

Query:   437 IPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQ 496
             IP +L +L  L  L +  N L GTLS +  +NLT L       N+L  K+  P      +
Sbjct:   376 IPEALFELVELTDLYLHNNTLEGTLSPS-ISNLTNLQWLVLYHNNLEGKL--PKEISALR 432

Query:   497 -LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ 555
              L+ + L       + PQ + +   L  +D+  +     IP  + + L ++N L+L  N+
Sbjct:   433 KLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNE 491

Query:   556 IFGQIP-DLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNN 614
             + G +P  L +  QL                                 +L   L + + +
Sbjct:   492 LVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYN-NSLQGNLPDSLIS 550

Query:   615 SMRLQVLNLGNNTLSGEI-PDCWMNWSFLFF-----------------------LHLGEN 650
                L  +NL +N L+G I P C  + S+L F                       L LG+N
Sbjct:   551 LRNLTRINLSHNRLNGTIHPLCGSS-SYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKN 609

Query:   651 DFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGE 710
               TG +P +LG +  L +L +  N  +G IP+ L  C +L   D++ N   G IP W+G 
Sbjct:   610 QLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG- 668

Query:   711 RLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEV 770
             +LS +  L L +NQF    P EL     L +L L  N+L G IP+ I NL  +   VL +
Sbjct:   669 KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGAL--NVLNL 726

Query:   771 DKF-FEDALXXXXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQT-LKLSHN 828
             DK  F  +L                 L  L LS N  +GEIP ++  L  LQ+ L LS+N
Sbjct:   727 DKNQFSGSLPQAMGKLSK--------LYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYN 778

Query:   829 FFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
              F+G IP  +G +  +E LD S N+L GE+P ++ +++ L   N+
Sbjct:   779 NFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNV 823

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 191/681 (28%), Positives = 326/681 (47%)

Query:   208 DLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQ 267
             D S   + P IT +  ++  + F         P +  NF +L +L++S N FA       
Sbjct:    48 DTSSPCNWPRITCTAGNVTEINFQNQNFTGTVPTTICNFPNLKSLNLSFNYFA-GEFPTV 106

Query:   268 VLGLVNLVFLDLSTNNFQGAVPDAIQN-STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLS 326
             +     L +LDLS N F G++PD I   +  L++LDL+ N F+  +P    +   L+ L+
Sbjct:   107 LYNCTKLQYLDLSQNLFNGSLPDDINRLAPKLKYLDLAANSFAGDIPKNIGRISKLKVLN 166

Query:   327 LSYNELQGSIPGSLGNLTSIKSLDLSFNRLES--KIPRAFKRLRHLRSVNLSGNKLSQEI 384
             L  +E  G+ P  +G+L+ ++ L L+ N   +  K+P  F +L+ L+ + L    L  EI
Sbjct:   167 LYMSEYDGTFPSEIGDLSELEELQLALNDKFTPVKLPTEFGKLKKLKYMWLEEMNLIGEI 226

Query:   385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQL 444
             S V+  F       L+ +DLS N L G + + +   KNL  L L  N+++G IP S+   
Sbjct:   227 SAVV--FENMTD--LKHVDLSVNNLTGRIPDVLFGLKNLTELYLFANDLTGEIPKSISA- 281

Query:   445 SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS 504
              +L +LD+S NNLNG++ E+   NLT L       N L  ++       P +L+ + L +
Sbjct:   282 KNLVHLDLSANNLNGSIPES-IGNLTNLELLYLFVNELTGEIPRAIGKLP-ELKELKLFT 339

Query:   505 CFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-L 563
               +  + P  +   + L   ++S + ++  +P+ L     ++  + +  N + G+IP+ L
Sbjct:   340 NKLTGEIPAEIGFISKLERFEVSENQLTGKLPENLCHG-GKLQSVIVYSNNLTGEIPESL 398

Query:   564 NDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSMRLQVLNL 623
              D   L +                              G +  F+C E+++   L +L+L
Sbjct:   399 GDCETLSSVLLQNNGFSGSVTISNNTRSNNNFT-----GKIPSFIC-ELHS---LILLDL 449

Query:   624 GNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGT-LSSLQILHLRGNRFSGKIPV 682
               N  +G IP C  N S L  L+LG+N  +G++P ++ T + S+ I H   N+ +GK+P 
Sbjct:   450 STNKFNGSIPRCIANLSTLEVLNLGKNHLSGSIPENISTSVKSIDIGH---NQLAGKLPR 506

Query:   683 SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKIL 742
             SL   + L + ++  N+     P W+ + +  + +L LR+N FHG       G + L+I+
Sbjct:   507 SLVRISSLEVLNVESNKINDTFPFWL-DSMQQLQVLVLRSNAFHGSINQN--GFSKLRII 563

Query:   743 DLSSNNLTGVIPR--CIN-----NLAGMAKEVLEVD----KFFEDALXXXXXXXXXXXXX 791
             D+S N+  G +P    +N     +L  +  + +  +     ++ D++             
Sbjct:   564 DISGNHFNGTLPLDFFVNWTAMFSLGKIEDQYMGTNYMRTNYYSDSIVVMIKGIALEMVR 623

Query:   792 XXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSS 851
                    +D S N F GEIP  V  L  L  L LS+N F+G IP +MG +  +E+LD S 
Sbjct:   624 ILNTFTTIDFSGNKFEGEIPRSVGLLKELHVLNLSNNGFTGHIPSSMGNLIELESLDVSQ 683

Query:   852 NRLQGEIPKNMVNLEFLEIFN 872
             N+L GEIP  +  L +L   N
Sbjct:   684 NKLSGEIPPELGKLSYLAYMN 704

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 4.8e-57, Sum P(2) = 4.8e-57
 Identities = 204/764 (26%), Positives = 327/764 (42%)

Query:   129 SYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVE 188
             S NDF G QIP  L +L NL  L++SR  F G IP  IGNLS+L F+D   N   G    
Sbjct:   120 SNNDFIG-QIPSSLETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSGQIPS 178

Query:   189 DFGWVXXXXXXXXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSS 248
               G++                  +S G     +L  L TLR S        P S  +   
Sbjct:   179 SLGYLSHLTSFNLSYNNFSGRVPSSIG-----NLSYLTTLRLSRNSFFGELPSSLGSLFH 233

Query:   249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHF 308
             L  L +  N F    I + +  L +L  +DL  NNF G +P ++ N + L    LS N+ 
Sbjct:   234 LTDLILDTNHFV-GKIPSSLGNLSHLTSIDLHKNNFVGEIPFSLGNLSCLTSFILSDNNI 292

Query:   309 SSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLR 368
                +P  F     L+ L++  N+L GS P +L NL  + +L L  NRL   +P     L 
Sbjct:   293 VGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLTGTLPSNMSSLS 352

Query:   369 HLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT-NQIGNFKNLDSLD 427
             +L+  + + N  +  +   L  F+  +   L+++ L NN L G L    I ++ NL  L 
Sbjct:   353 NLKLFDATENHFTGPLPSSL--FNIPS---LKTITLENNQLNGSLGFGNISSYSNLTVLR 407

Query:   428 LSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVV 487
             L  NN  G I  S+ +L +L+ LD+S  N  G +    F++L  +   + S  +    + 
Sbjct:   408 LGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTID 467

Query:   488 SPSWTPPFQL-QAIGLSSCFIGPQFPQWLLSQNHLIYLD---LSNSSISDTIPDRLVKSL 543
                    F+L   + LS   +        LS + L+ +    LS   I++  P + ++S 
Sbjct:   468 MYEILSSFKLLDTLDLSGSHVSTTNKS-SLSNSSLVLISQLYLSGCGITE-FP-KFLRSQ 524

Query:   544 SQINYLNLSYNQIFGQIPD------LNDAAQLETXXXXXXXXXXXXXXXXX----XXXXX 593
               +  L++S N+I GQ+P       + +   L                            
Sbjct:   525 ELMLTLDISNNKIKGQVPGWLWMLPVLNYVNLSNNTFIGFERSTKLGLTSIQEPPAMRQL 584

Query:   594 XXXXXXXXGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWS--FLFFLHLGEND 651
                     G +  F+C E+     L  L+  NN  +G IP C  N    +L  L+L  N 
Sbjct:   585 FCSNNNFTGNIPSFIC-ELPY---LSTLDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNR 640

Query:   652 FTGNLPTSL-GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGE 710
              +G LP ++  +L SL + H   N+  GK+P SL + + L L ++  N+     P W+  
Sbjct:   641 LSGLLPENIFESLISLDVGH---NQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSS 697

Query:   711 RLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEV 770
              L  + +L LR+N F+G  P E    + L+I+D+S N   G +P    N       +  +
Sbjct:   698 -LQELQVLVLRSNAFYG--PIEKTQFSKLRIIDISGNQFNGTLPA---NFFVNWTAMFSL 751

Query:   771 DKFFEDALXXXXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQT-LKLSHNF 829
             D+  + +                    VL       +  +  ++  ++ + T +  S N 
Sbjct:   752 DENEDQSNGETMSNMYMSTDYFYFDSMVL------MNKGVEMELERVLKVFTVIDFSGNK 805

Query:   830 FSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
             F G IP ++G +K +  L+ S+N L G I  +M NL  LE  ++
Sbjct:   806 FEGEIPKSIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDV 849

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 1.7e-55, P = 1.7e-55
 Identities = 220/742 (29%), Positives = 326/742 (43%)

Query:   137 QIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXX 196
             QIP+ + SL+NL  L ++   F G IP +I NL +LQ LDL  N L GL       +   
Sbjct:    80 QIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPR----LLSE 135

Query:   197 XXXXXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISD 256
                        +    S  P    SL +L +L  S   L    P      S+L  L +  
Sbjct:   136 LPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGL 195

Query:   257 NQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWF 316
             N F+   I +++  +  L      +  F G +P  I     L  LDLS N    S+P  F
Sbjct:   196 NSFS-GQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSF 254

Query:   317 NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLS 376
              +  +L  L+L   EL G IP  LGN  S+KSL LSFN L   +P     +  L + +  
Sbjct:   255 GELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIP-LLTFSAE 313

Query:   377 GNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436
              N+LS  +   +  +      VL+SL L+NN   G + ++I +   L  L L+ N +SG 
Sbjct:   314 RNQLSGSLPSWMGKWK-----VLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGS 368

Query:   437 IPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQ 496
             IP  L    SL  +D+S N L+GT+ E  F   + L     + N +   +    W  P  
Sbjct:   369 IPRELCGSGSLEAIDLSGNLLSGTIEEV-FDGCSSLGELLLTNNQINGSIPEDLWKLP-- 425

Query:   497 LQAIGL-SSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ 555
             L A+ L S+ F G + P+ L    +L+    S + +   +P  +  + S +  L LS NQ
Sbjct:   426 LMALDLDSNNFTG-EIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAAS-LKRLVLSDNQ 483

Query:   556 IFGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGT--LSRFLCNEMN 613
             + G+IP   +  +L +                              G+  L   + +++ 
Sbjct:   484 LTGEIP--REIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKIT 541

Query:   614 NSMRLQVLNLGNNTLSGEIPDC------WMNWSFLFFL-H-----LGENDFTGNLPTSLG 661
                +LQ L L  N LSG IP         +    L FL H     L  N  +G +P  LG
Sbjct:   542 ALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELG 601

Query:   662 TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR 721
                 L  + L  N  SG+IP SL   T L + D+S N   G+IP  +G  L  +  L+L 
Sbjct:   602 ECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLK-LQGLNLA 660

Query:   722 ANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALXXX 781
              NQ +G  P     L SL  L+L+ N L G +P  + NL    KE+  +D  F +     
Sbjct:   661 NNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNL----KELTHMDLSFNNL---- 712

Query:   782 XXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM 841
                           L  L +  N F+GEIPS++ NL  L+ L +S N  SG IP  +  +
Sbjct:   713 -SGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGL 771

Query:   842 KSVEALDFSSNRLQGEIPKNMV 863
              ++E L+ + N L+GE+P + V
Sbjct:   772 PNLEFLNLAKNNLRGEVPSDGV 793

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.7e-60, Sum P(2) = 1.7e-60
 Identities = 205/733 (27%), Positives = 323/733 (44%)

Query:     3 VGVALLFLHFLVISTINNNINFCNGSSYAAAGCIESEREALLSFKQDLEDPSNRLAS-WN 61
             +G+ +    F  +  + N   F +  + +   C   +R+ALL  +++   PS  L + WN
Sbjct:    10 LGITITIYFFFCLLPLPNT--FASPPTQSL--CRHDQRDALLELQKEFPIPSVILQNPWN 65

Query:    62 NIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSXXXXX 121
               G+ DCC W GV CD I G V+ L+L   S    S       + S  + K+        
Sbjct:    66 K-GI-DCCSWGGVTCDAILGEVISLKLYFLSTASTS------LKSSSALFKLQ------- 110

Query:   122 XXXXXXXSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
                    S  + QG +IP  + +L +L +L++S    VG +P  IGNL+ L+++DLR N+
Sbjct:   111 HLTHLDLSNCNLQG-EIPSSIENLSHLTHLDLSTNHLVGEVPASIGNLNQLEYIDLRGNH 169

Query:   182 LGGLYVEDFGWVXXXXXXXXXXXXGVDLSKTS--DGPLITNSLHSLETLRFSGCLLHHIS 239
             L G     F  +             +DL + +   G ++ ++L SL  L  S    +H  
Sbjct:   170 LRGNIPTSFANLTKLSL--------LDLHENNFTGGDIVLSNLTSLAILDLSS---NHFK 218

Query:   240 PLSFANFSSLVTLDI---SDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNST 296
                 A+ S L  L+    ++N F        +L + +L  + LS N F+G +     +S+
Sbjct:   219 SFFSADLSGLHNLEQIFGNENSFV-GLFPASLLKISSLDKIQLSQNQFEGPIDFGNTSSS 277

Query:   297 S-LQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
             S L  LD+S N+F   VP   +K ++LE L LS+N  +G  P S+  L ++ SLD+S+N+
Sbjct:   278 SRLTMLDISHNNFIGRVPSSLSKLVNLELLDLSHNNFRGLSPRSISKLVNLTSLDISYNK 337

Query:   356 LESKIPRAFKRLRHLRSVNLSGNK---LSQEISQV-------LDMFS----------ACA 395
             LE ++P    +  +L+SV+LS N    L + +  V       L++ S           C 
Sbjct:   338 LEGQVPYFIWKPSNLQSVDLSHNSFFDLGKSVEVVNGAKLVGLNLGSNSLQGPIPQWICN 397

Query:   396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
                +  LDLS+N   G +   + N  + ++L+L  N++SG +P      + LR LDVS N
Sbjct:   398 FRFVFFLDLSDNRFTGSIPQCLKNSTDFNTLNLRNNSLSGFLPELCMDSTMLRSLDVSYN 457

Query:   456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQ-LQAIGL-SSCFIGPQFPQ 513
             N  G L ++   N   +   +  GN +  K   P W    + L  + L S+ F GP +  
Sbjct:   458 NFVGKLPKS-LMNCQDMEFLNVRGNKI--KDTFPFWLGSRKSLMVLVLRSNAFYGPVY-- 512

Query:   514 WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETXX 573
                  N   YL     SI D   +  V SL Q  + N +       I  LN A    T  
Sbjct:   513 -----NSTTYLGFPRLSIIDISNNDFVGSLPQDYFANWTEMATVWDINRLNYARN--TSS 565

Query:   574 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSMR-LQVLNLGNNTLSGEI 632
                                             + +  + N   R  +V++   N  SG I
Sbjct:   566 RTIQYGGLQTIQRSNYVGDNFNMHADSMDLAYKGVDTDFNRIFRGFKVIDFSGNRFSGHI 625

Query:   633 PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL 692
             P      S L  L+L  N FTGN+P SL  +++L+ L L  N  SG+IP SL N + L  
Sbjct:   626 PRSIGLLSELLHLNLSGNAFTGNIPPSLANITNLETLDLSRNNLSGEIPRSLGNLSFLSN 685

Query:   693 FDISENEFVGNIP 705
              + S N   G +P
Sbjct:   686 INFSHNHLQGFVP 698

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 206/680 (30%), Positives = 308/680 (45%)

Query:   213 SDGPLITN-SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGL 271
             S+  L T  +L  L TL  S        P    NFS L TLD+S N F+   I + +  L
Sbjct:   108 SNSSLFTVLNLRFLTTLDLSYNYFSGQIPSCIENFSHLTTLDLSKNYFS-GGIPSSIGNL 166

Query:   272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
               L FLDLS N F G +P    N   L +L +  N  +   P        L  LSLS N+
Sbjct:   167 SQLTFLDLSGNEFVGEMP-FFGNMNQLTNLYVDSNDLTGIFPLSLLNLKHLSDLSLSRNQ 225

Query:   332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
               G++P ++ +L++++  +   N     +P +   +  L S+NL  N+L+      L+  
Sbjct:   226 FTGTLPSNMSSLSNLEYFEAWGNAFTGTLPSSLFTIASLTSINLRNNQLNG----TLEFG 281

Query:   392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL-GQLSSLRYL 450
             +  + + L  LD+SNN   G +   I  F NL  LDLS  N  G +  S+   L SL+ L
Sbjct:   282 NISSPSTLTVLDISNNNFIGPIPKSISKFINLQDLDLSHLNTQGPVDFSIFTNLKSLQLL 341

Query:   451 DVSTNNLNGTLSENHF--ANLTKLVGFDASGN--SLVLKVVSPSWTPPFQLQAIGLSSCF 506
             ++S  N   T+  N    ++L  +   D SGN  S   K+      P   +  + LS C 
Sbjct:   342 NLSHLNTTTTIDLNALFSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCG 401

Query:   507 IGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDA 566
             I  +FP+ L SQ+ +  LD+SN+ I   +P  L  +L ++ +++LS N   G        
Sbjct:   402 I-TEFPELLRSQHKMTNLDISNNKIKGQVPGWLW-TLPKLIFVDLSNNIFTGFERSTEHG 459

Query:   567 AQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSMR-LQVLNLGN 625
               L T                              G +  F+C     ++R L  L+L +
Sbjct:   460 LSLITKPSMQYLVGSNNNFT---------------GKIPSFIC-----ALRSLITLDLSD 499

Query:   626 NTLSGEIPDCWMNW-SFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSL 684
             N L+G IP C  N  S L FL+L +N   G LP S+    SL+ L +  N+  GK+P S 
Sbjct:   500 NNLNGSIPPCMGNLKSTLSFLNLRQNRLGGGLPRSI--FKSLRSLDVGHNQLVGKLPRSF 557

Query:   685 QNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDL 744
                + L + ++  N      P W+   L  + +L LR+N FHG  P       +L+I++L
Sbjct:   558 IRLSALEVLNVENNRINDTFPFWLSS-LKKLQVLVLRSNAFHG--PIHHASFHTLRIINL 614

Query:   745 SSNNLTGVIPR--CIN-NLAG--MAKEVLEVDKFFEDALXXXXXXXXXXXXXXXXXL--- 796
             S N  +G +P    +N N     MA E    +K+  D+                  L   
Sbjct:   615 SHNQFSGTLPANYFVNWNAMSSLMATEDRSQEKYMGDSFRYYHDSVVLMNKGLEMELVRI 674

Query:   797 -KV---LDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSN 852
              K+   LD S N   GEIP  +  L  L  L LS N F+G IP +MG ++ +E+LD S N
Sbjct:   675 LKIYTALDFSENKLEGEIPRSIGLLKELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQN 734

Query:   853 RLQGEIPKNMVNLEFLEIFN 872
             +L GEIP+ + NL +L   N
Sbjct:   735 KLSGEIPQELGNLSYLAYMN 754

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	873
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-66
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-34
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  239 bits (612), Expect = 2e-66
 Identities = 203/671 (30%), Positives = 294/671 (43%), Gaps = 114/671 (16%)

Query: 39  EREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSP 98
           E E LLSFK  + DP   L++WN+    D C W G+ C+N +  V+ + L          
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNS--SADVCLWQGITCNNSS-RVVSIDLSG-------- 78

Query: 99  AEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPR-FLGSLENLMYLNISRAG 157
                     I GKI+ ++  L ++  ++LS N   G  IP     +  +L YLN+S   
Sbjct: 79  --------KNISGKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNN 129

Query: 158 FVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPL 217
           F G IP   G++ NL+ LDL  N L G    D G  S L   K LDL G           
Sbjct: 130 FTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL---KVLDLGG----------- 173

Query: 218 ITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL 277
                           L+  I P S  N +SL  L ++ NQ     I  ++  + +L ++
Sbjct: 174 --------------NVLVGKI-PNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWI 217

Query: 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
            L  NN  G +P  I   TSL HLDL  N+ +  +P       +L+YL L  N+L G IP
Sbjct: 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
            S+ +L  + SLDLS N L  +IP    +L++L               ++L +FS     
Sbjct: 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL---------------EILHLFS----- 317

Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
                    N   G +   + +   L  L L  N  SG IP +LG+ ++L  LD+STNNL
Sbjct: 318 ---------NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 458 NGTLSEN--HFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
            G + E      NL KL+ F    NSL  ++   S      L+ + L       + P   
Sbjct: 369 TGEIPEGLCSSGNLFKLILFS---NSLEGEI-PKSLGACRSLRRVRLQDNSFSGELPSEF 424

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLS 575
                + +LD+SN+++   I  R    +  +  L+L+ N+ FG +PD   + +LE LDLS
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483

Query: 576 SNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDC 635
            N  SG    +P  L +L                        L  L L  N LSGEIPD 
Sbjct: 484 RNQFSG---AVPRKLGSLS----------------------ELMQLKLSENKLSGEIPDE 518

Query: 636 WMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI 695
             +   L  L L  N  +G +P S   +  L  L L  N+ SG+IP +L N   L   +I
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 696 SENEFVGNIPT 706
           S N   G++P+
Sbjct: 579 SHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  236 bits (604), Expect = 2e-65
 Identities = 201/631 (31%), Positives = 292/631 (46%), Gaps = 121/631 (19%)

Query: 245 NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI-QNSTSLQHLDL 303
           N S +V++D+S    +   I + +  L  +  ++LS N   G +PD I   S+SL++L+L
Sbjct: 67  NSSRVVSIDLSGKNIS-GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA 363
           S N+F+ S+P       +LE L LS N L G IP  +G+ +S+K LDL  N L  KIP +
Sbjct: 126 SNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNL 423
              L                               LE L L++N L G +  ++G  K+L
Sbjct: 184 LTNL-----------------------------TSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 424 DSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLV 483
             + L +NN+SG IP  +G L+SL +LD+  NNL G +  +   NL  L           
Sbjct: 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNL----------- 262

Query: 484 LKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSL 543
                         Q + L    +    P  + S   LI LDLS++S+S  IP+ LV  L
Sbjct: 263 --------------QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQL 307

Query: 544 SQINYLNLSYNQIFGQIPD-LNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSG 602
             +  L+L  N   G+IP  L    +L+ L L SN  SG    IP +L            
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE---IPKNL------------ 352

Query: 603 TLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGT 662
                   + NN   L VL+L  N L+GEIP+   +   LF L L  N   G +P SLG 
Sbjct: 353 -------GKHNN---LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 663 LSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA 722
             SL+ + L+ N FSG++P        +   DIS N   G I +   + +  + +LSL  
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLAR 461

Query: 723 NQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYK 782
           N+F G  P +  G   L+ LDLS N  +G +PR + +L+    E+++             
Sbjct: 462 NKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLS----ELMQ------------- 503

Query: 783 KKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMK 842
                           L LS N  SGEIP ++++   L +L LSHN  SG+IP +   M 
Sbjct: 504 ----------------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 843 SVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
            +  LD S N+L GEIPKN+ N+E L   NI
Sbjct: 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  140 bits (354), Expect = 5e-34
 Identities = 101/313 (32%), Positives = 150/313 (47%), Gaps = 42/313 (13%)

Query: 564 NDAAQLETLDLSSNSLSGPLPLIPSSL---TTLDLSSNFLSGTLSRFLCNEMNNSMRLQV 620
           N+++++ ++DLS  ++SG +      L    T++LS+N LSG +     +    S  L+ 
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD---DIFTTSSSLRY 122

Query: 621 LNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI 680
           LNL NN  +G IP   +    L  L L  N  +G +P  +G+ SSL++L L GN   GKI
Sbjct: 123 LNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 681 PVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLK 740
           P SL N T L    ++ N+ VG IP  +G ++  +  + L  N   G  P E+ GL SL 
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 741 ILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLD 800
            LDL  NNLTG IP  + NL                                   L+ L 
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKN---------------------------------LQYLF 266

Query: 801 LSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPK 860
           L  N  SG IP  + +L  L +L LS N  SG IP  +  ++++E L   SN   G+IP 
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Query: 861 NMVNLEFLEIFNI 873
            + +L  L++  +
Sbjct: 327 ALTSLPRLQVLQL 339

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 7/120 (5%)

Query: 621 LNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI 680
           L L N  L G IP+       L  ++L  N   GN+P SLG+++SL++L L  N F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 681 PVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLK 740
           P SL   T LR+ +++ N   G +P  +G RL       L    F+      LCG+  L+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL-------LHRASFNFTDNAGLCGIPGLR 535

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.9 bits (179), Expect = 4e-13
 Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           L L     +G +P+ I     LQ ++LS N    ++P        LE L LSYN   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPRAF-KRLRHLRSVNLSGN 378
           P SLG LTS++ L+L+ N L  ++P A   RL H  S N + N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 2e-12
 Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 4/92 (4%)

Query: 593 LDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDF 652
           L L +  L G    F+ N+++    LQ +NL  N++ G IP    + + L  L L  N F
Sbjct: 423 LGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 653 TGNLPTSLGTLSSLQILHLRGNRFSGKIPVSL 684
            G++P SLG L+SL+IL+L GN  SG++P +L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 2e-11
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
           L L        +P+  +K   L+ ++LS N ++G+IP SLG++TS++ LDLS+N     I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 361 PRAFKRLRHLRSVNLSGNKLSQEI 384
           P +  +L  LR +NL+GN LS  +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 60/269 (22%), Positives = 96/269 (35%), Gaps = 39/269 (14%)

Query: 158 FVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPL 217
            +  +   +     LQ LDL  N LG         +   S L+ L L+   L       L
Sbjct: 69  GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG-LRL 127

Query: 218 ITNSL----HSLETLRFSGCLLHHISPLSFAN----FSSLVTLDISDNQFADSSIVNQVL 269
           +   L     +LE L      L   S  + A        L  L++++N   D+ I     
Sbjct: 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187

Query: 270 GL---VNLVFLDLSTNNFQ----GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDL 322
           GL    NL  LDL+ N        A+ + + +  SL+ L+L  N                
Sbjct: 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN---------------- 231

Query: 323 EYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRL----RHLRSVNLSGN 378
              +L+           L    S+ +L LS N +     +    +      L  ++L GN
Sbjct: 232 ---NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288

Query: 379 KLSQEISQVLDMFSACASNVLESLDLSNN 407
           K  +E +Q+L        N LESL + ++
Sbjct: 289 KFGEEGAQLLAESLLEPGNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
            ++ L L N  L G + N I   ++L S++LS N+I G+IP SLG ++SL  LD+S N+ 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 458 NGTLSENHFANLTKLVGFDASGNSLVLKV 486
           NG++ E+    LT L   + +GNSL  +V
Sbjct: 479 NGSIPES-LGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 8e-11
 Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 29/116 (25%)

Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS 405
           I  L L    L   IP    +LRHL+S+NLSGN +   I                     
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------- 460

Query: 406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTL 461
                      +G+  +L+ LDLS+N+ +G IP SLGQL+SLR L+++ N+L+G +
Sbjct: 461 ----------SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 14/261 (5%)

Query: 214 DGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVN 273
           DG     +L  L +L  +   L   +       ++L +LD+ +N   D       L   N
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIP-PLIGLLKSN 141

Query: 274 LVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
           L  LDLS N  + ++P  ++N  +L++LDLS N  S       N   +L  L LS N++ 
Sbjct: 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGNKIS 199

Query: 334 GSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
             +P  +  L++++ LDLS N +   +  +   L++L  + LS NKL      + ++ + 
Sbjct: 200 -DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN- 256

Query: 394 CASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
                LE+LDLSNN +  +  + +G+  NL  LDLS N++S  +PL    L  L  L   
Sbjct: 257 -----LETLDLSNNQISSI--SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309

Query: 454 TNNLNGTLSENHFANLTKLVG 474
              L     + +   L   + 
Sbjct: 310 LLTLKALELKLNSILLNNNIL 330

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 23/65 (35%), Positives = 40/65 (61%)

Query: 795 YLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854
           +L+ ++LS N   G IP  + ++  L+ L LS+N F+G IP ++G + S+  L+ + N L
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 855 QGEIP 859
            G +P
Sbjct: 503 SGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 5e-09
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 33/123 (26%)

Query: 718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDA 777
           L L      GF P ++  L  L+ ++LS N++ G IP  + ++                 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS--------------- 467

Query: 778 LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVN 837
                             L+VLDLS N F+G IP  +  L  L+ L L+ N  SGR+P  
Sbjct: 468 ------------------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Query: 838 MGA 840
           +G 
Sbjct: 510 LGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 799 LDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEI 858
           L L      G IP+ ++ L  LQ++ LS N   G IP ++G++ S+E LD S N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 859 PKNMVNLEFLEIFNI 873
           P+++  L  L I N+
Sbjct: 483 PESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 25/110 (22%)

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
           L L      G +P  +  L  LQ ++L GN   G IP SL + T L + D+S N F G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 705 PTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754
           P  +G+                         L SL+IL+L+ N+L+G +P
Sbjct: 483 PESLGQ-------------------------LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 36 IESEREALLSFKQDL-EDPSNRLASWNNIGVGDCCKWYGVVCD 77
          +  +R+ALL+FK  L  DPS  L+SWN     D C W GV CD
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNP-SSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 28/59 (47%), Positives = 34/59 (57%)

Query: 322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
           L+ L LS N L     G+   L ++K LDLS N L S  P AF  L  LRS++LSGN L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 27/111 (24%)

Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGP 582
           L L N  +   IP+ + K L  +  +NLS N I G IP  L     LE LDLS NS +G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG- 480

Query: 583 LPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP 633
              IP SL  L                        L++LNL  N+LSG +P
Sbjct: 481 --SIPESLGQLTS----------------------LRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 85/267 (31%), Positives = 122/267 (45%), Gaps = 39/267 (14%)

Query: 335 SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
               +L NL  + SLDL+ NRL S I      L +L S++L  N ++     +  + S  
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSN- 141

Query: 395 ASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVST 454
               L+ LDLS+N +   L + + N  NL +LDLSFN++S  +P  L  LS+L  LD+S 
Sbjct: 142 ----LKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSG 195

Query: 455 NNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW 514
           N ++          L+ L   D S NS++                          +    
Sbjct: 196 NKISDL--PPEIELLSALEELDLSNNSII--------------------------ELLSS 227

Query: 515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDL 574
           L +  +L  L+LSN+ + D      + +LS +  L+LS NQI   I  L     L  LDL
Sbjct: 228 LSNLKNLSGLELSNNKLEDLP--ESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDL 284

Query: 575 SSNSLSGPLPLIPSSLTTLDLSSNFLS 601
           S NSLS  LPLI   L  L+L  N L 
Sbjct: 285 SGNSLSNALPLIALLLLLLELLLNLLL 311

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.4 bits (111), Expect = 9e-07
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
           +L+ LDLS N  +      F    +L+ L LS N L    P +   L S++SLDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 64/263 (24%), Positives = 98/263 (37%), Gaps = 47/263 (17%)

Query: 221 SLHSLETLRFSGCLLHHIS----PLSFANFSSLVTLDISDNQFADSSIVNQVLG-----L 271
            L  L+ LR  G  L   +      +     SL  L +S N+        Q L       
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 272 VNLVFLDLSTNNFQGAVPDAIQN---STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS 328
             L  LDLS N         +++   S+SLQ L L+ N                    L 
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-------------------GLG 121

Query: 329 YNELQGSIPGSLGNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQEI 384
              L+    G      +++ L L  NRLE      + +A +  R L+ +NL+ N +    
Sbjct: 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181

Query: 385 SQVLDMFSACASNV-LESLDLSNNTL----FGLLTNQIGNFKNLDSLDLSFNNISGHI-- 437
            + L       +N  LE LDL+NN L       L   + + K+L+ L+L  NN++     
Sbjct: 182 IRAL--AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239

Query: 438 ---PLSLGQLSSLRYLDVSTNNL 457
                 L    SL  L +S N++
Sbjct: 240 ALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 49/155 (31%), Positives = 67/155 (43%), Gaps = 32/155 (20%)

Query: 39  EREALLSFKQDLEDPSNRLASWNNIGVGDCC-----KWYGVVC--DNITGH--VLELRLR 89
           E  AL + K  L  P  R   WN    GD C      W G  C  D+  G   +  L L 
Sbjct: 373 EVSALQTLKSSLGLPL-RFG-WN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD 426

Query: 90  NPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLM 149
           N                  + G I   +  L+HL  ++LS N  +G  IP  LGS+ +L 
Sbjct: 427 NQG----------------LRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLE 469

Query: 150 YLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG 184
            L++S   F G IP  +G L++L+ L+L  N L G
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 28/59 (47%), Positives = 34/59 (57%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
           L+SLDLSNN L  +         NL  LDLS NN++   P +   L SLR LD+S NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 422 NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNS 481
           NL SLDLS N ++     +   L +L+ LD+S NNL  ++S   F+ L  L   D SGN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 482 L 482
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 345 SIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDL 404
           ++KSLDLS NRL      AFK L +L+ ++LSGN L+   S   + FS   S  L SLDL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT---SISPEAFSGLPS--LRSLDL 55

Query: 405 SNN 407
           S N
Sbjct: 56  SGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 6e-05
 Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 16/200 (8%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSL-ENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
            LL L +L  LDL  N+     IP  +G L  NL  L++S    +  +P  + NL NL+ 
Sbjct: 111 ELLELTNLTSLDLDNNNI--TDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKN 167

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL 234
           LDL  N L  L       +S+LS L +LDLSG  +S       + ++L  L+    S   
Sbjct: 168 LDLSFNDLSDLPKL----LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE 223

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
           L      S +N  +L  L++S+N+  D  +   +  L NL  LDLS N  Q +   ++ +
Sbjct: 224 L----LSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNN--QISSISSLGS 275

Query: 295 STSLQHLDLSRNHFSSSVPD 314
            T+L+ LDLS N  S+++P 
Sbjct: 276 LTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           NL  LDLS N        A +   +L+ LDLS N+ +S  P+ F+    L  L LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258
           LK LDLS   L+   DG      L +L+ L  SG  L  ISP +F+   SL +LD+S N 
Sbjct: 2   LKSLDLSNNRLTVIPDGAF--KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 259 F 259
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 132 DFQGI--QIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVED 189
           D QG+   IP  +  L +L  +N+S     G IP  +G++++L+ LDL  N   G   E 
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 190 FGWVSHLSLLKHLDLSGVDLS 210
            G    L+ L+ L+L+G  LS
Sbjct: 486 LG---QLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 53/239 (22%), Positives = 83/239 (34%), Gaps = 38/239 (15%)

Query: 503 SSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSL----SQINYLNLSYNQIFG 558
           +    G    + LL  + L  L L+N+ + D     L K L      +  L L  N++ G
Sbjct: 92  ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151

Query: 559 QIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRL 618
                           S  +L+  L      L  L+L++N +     R L   +  +  L
Sbjct: 152 A---------------SCEALAKALRANR-DLKELNLANNGIGDAGIRALAEGLKANCNL 195

Query: 619 QVLNLGNNTLSGE----IPDCWMNWSFLFFLHLGENDFTGN-----LPTSLGTLSSLQIL 669
           +VL+L NN L+ E    + +   +   L  L+LG+N+ T           L    SL  L
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255

Query: 670 HLRGNRFSGKIPVSL----QNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQ 724
            L  N  +      L         L   D+  N+F        G +L    LL      
Sbjct: 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF-----GEEGAQLLAESLLEPGNEL 309

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 34/196 (17%)

Query: 248 SLVTLDISDNQFAD------SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ-------N 294
            LV +D+S N           +++  V  L  + F D  T   +  +   +         
Sbjct: 31  ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK 90

Query: 295 STSLQHLDLSRNHFSSSVP----DWFNKFIDLEYLSLSYNELQGSIPGSLG--------- 341
              LQ +DLS N F S  P    D  +   DL +L L+ N L     G +G         
Sbjct: 91  CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN 150

Query: 342 ----NLTSIKSLDLSFNRLES----KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
               +   ++ +    NRLE+          +   +L+ V +  N +  E   +L     
Sbjct: 151 KKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL 210

Query: 394 CASNVLESLDLSNNTL 409
             S+ LE LDL +NT 
Sbjct: 211 FYSHSLEVLDLQDNTF 226

Length = 388

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 63/201 (31%), Positives = 89/201 (44%), Gaps = 30/201 (14%)

Query: 515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDL 574
           LL   +L  LDL N++I+D IP  +    S +  L+LS N+I      L +   L+ LDL
Sbjct: 112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDL 170

Query: 575 SSNSLS--GPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEI 632
           S N LS    L    S+L  LDLS N +S      L  E+     L+ L+L NN++  E+
Sbjct: 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSII-EL 224

Query: 633 PDCWMNWSFLFFLHLGEN------------------DFTGNL---PTSLGTLSSLQILHL 671
                N   L  L L  N                  D + N     +SLG+L++L+ L L
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Query: 672 RGNRFSGKIPVSLQNCTELRL 692
            GN  S  +P+       L L
Sbjct: 285 SGNSLSNALPLIALLLLLLEL 305

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 25/92 (27%)

Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L  L+++  SG  +    P S  + +SL  LD                         LS 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLD-------------------------LSY 475

Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP 313
           N+F G++P+++   TSL+ L+L+ N  S  VP
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
           +L  LDLS N    I        L NL  L++S      I P     L +L+ LDL  N 
Sbjct: 1   NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 182 L 182
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           NL  L++S      I       L NL+ LDL  N L  +  E F   S L  L+ LDLSG
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF---SGLPSLRSLDLSG 57

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	873
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PLN03150	623	hypothetical protein; Provisional	99.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.24
PLN03150	623	hypothetical protein; Provisional	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.75
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.56
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
PRK15386	426	type III secretion protein GogB; Provisional	98.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.05
PRK15386	426	type III secretion protein GogB; Provisional	98.04
KOG4341	483	consensus F-box protein containing LRR [General fu	97.88
KOG4341	483	consensus F-box protein containing LRR [General fu	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.61
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.51
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.48
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.48
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.91
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.37
KOG4308	478	consensus LRR-containing protein [Function unknown	94.97
KOG4308	478	consensus LRR-containing protein [Function unknown	94.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.78
smart00370	26	LRR Leucine-rich repeats, outliers.	87.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.14
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.44
smart00370	26	LRR Leucine-rich repeats, outliers.	85.44
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.49
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.69
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.29

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.1e-67  Score=643.07  Aligned_cols=579  Identities=35%  Similarity=0.582  Sum_probs=405.3

Q ss_pred             CHHHHHHHHHhhhcCCCCCCCcCCCccCCCCCCccceeeEecCCCCcEEEEecCCCCCCCCCchhhhhccccceeeeccc
Q 045210           36 IESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINP  115 (873)
Q Consensus        36 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~  115 (873)
                      .++|++||++||+++.+|.+.+.+|+ . +.+||.|.||+|++ .++|+.+++++.                .+.|.+++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~-~-~~~~c~w~gv~c~~-~~~v~~L~L~~~----------------~i~~~~~~   87 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN-S-SADVCLWQGITCNN-SSRVVSIDLSGK----------------NISGKISS   87 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC-C-CCCCCcCcceecCC-CCcEEEEEecCC----------------CccccCCh
Confidence            36899999999999988888889997 3 67899999999975 579999999985                67788888


Q ss_pred             CccCCCCCCeecCCCCCCCCCCCCcccc-CCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCcccccc
Q 045210          116 SLLGLKHLIHLDLSYNDFQGIQIPRFLG-SLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVS  194 (873)
Q Consensus       116 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~  194 (873)
                      ++..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|.  +.+++|++|++++|              
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n--------------  150 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN--------------  150 (968)
T ss_pred             HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC--------------
Confidence            888889999999998888765 666544 788888888888887776664  23444444444443              


Q ss_pred             CCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCC
Q 045210          195 HLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNL  274 (873)
Q Consensus       195 ~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  274 (873)
                                                             .+.+..|..++++++|++|++++|.+. +.+|..+.++++|
T Consensus       151 ---------------------------------------~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L  190 (968)
T PLN00113        151 ---------------------------------------MLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSL  190 (968)
T ss_pred             ---------------------------------------cccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCC
Confidence                                                   333333444555555666666555554 4455555555566


Q ss_pred             cEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCC
Q 045210          275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN  354 (873)
Q Consensus       275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  354 (873)
                      ++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus       191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence            66666666555555666666666666666666666556666666666666666666665555555666666666666666


Q ss_pred             cCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccC
Q 045210          355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS  434 (873)
Q Consensus       355 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  434 (873)
                      .+.+.+|..+..+++                             |++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus       271 ~l~~~~p~~l~~l~~-----------------------------L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        271 KLSGPIPPSIFSLQK-----------------------------LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             eeeccCchhHhhccC-----------------------------cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            555555555554443                             344444444444444555555566666666666666


Q ss_pred             ccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchh
Q 045210          435 GHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW  514 (873)
Q Consensus       435 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  514 (873)
                      +.+|..+..+++|+.|++++|.+.+.+|.                                                  +
T Consensus       322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--------------------------------------------------~  351 (968)
T PLN00113        322 GKIPVALTSLPRLQVLQLWSNKFSGEIPK--------------------------------------------------N  351 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCCCCcCcCCh--------------------------------------------------H
Confidence            55555555666666666665555443332                                                  1


Q ss_pred             hhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEE
Q 045210          515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLD  594 (873)
Q Consensus       515 l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~  594 (873)
                      +..+++|+.|++++|++.+.+|..                        +..+++                     ++.|+
T Consensus       352 l~~~~~L~~L~Ls~n~l~~~~p~~------------------------~~~~~~---------------------L~~L~  386 (968)
T PLN00113        352 LGKHNNLTVLDLSTNNLTGEIPEG------------------------LCSSGN---------------------LFKLI  386 (968)
T ss_pred             HhCCCCCcEEECCCCeeEeeCChh------------------------HhCcCC---------------------CCEEE
Confidence            222222333333333332222222                        222222                     23333


Q ss_pred             ccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCC
Q 045210          595 LSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN  674 (873)
Q Consensus       595 l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  674 (873)
                      +++|.+.+.+|..    +..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|
T Consensus       387 l~~n~l~~~~p~~----~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  462 (968)
T PLN00113        387 LFSNSLEGEIPKS----LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN  462 (968)
T ss_pred             CcCCEecccCCHH----HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence            3333333344443    233788899999999999899999999999999999999999988888888999999999999


Q ss_pred             cccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210          675 RFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP  754 (873)
Q Consensus       675 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  754 (873)
                      ++.+.+|..+. .++|+.|++++|++++.+|..+.. +++|+.|++++|++.+.+|+.+..+++|+.|++++|.++|.+|
T Consensus       463 ~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        463 KFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGS-LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             eeeeecCcccc-cccceEEECcCCccCCccChhhhh-hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence            99988887664 578999999999999889988875 8999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC
Q 045210          755 RCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI  834 (873)
Q Consensus       755 ~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  834 (873)
                      ..++.+++|                                 +.|||++|+++|.+|..+.++++|+.|++++|+++|.+
T Consensus       541 ~~~~~l~~L---------------------------------~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  587 (968)
T PLN00113        541 ASFSEMPVL---------------------------------SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL  587 (968)
T ss_pred             hhHhCcccC---------------------------------CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence            888877665                                 78999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCeEeccCCcc
Q 045210          835 PVNMGAMKSVEALDFSSNRL  854 (873)
Q Consensus       835 p~~l~~l~~L~~L~ls~N~l  854 (873)
                      |.. +.+..+....+.+|+.
T Consensus       588 p~~-~~~~~~~~~~~~~n~~  606 (968)
T PLN00113        588 PST-GAFLAINASAVAGNID  606 (968)
T ss_pred             CCc-chhcccChhhhcCCcc
Confidence            975 5566666777788863

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-56  Score=552.98  Aligned_cols=519  Identities=34%  Similarity=0.552  Sum_probs=378.7

Q ss_pred             CCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhc-CCCCCcEEEccCCcCCCCChhhhcCCCCCCEEE
Q 045210          224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD  302 (873)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  302 (873)
                      +++.|++++|.+.+..+..|..+++|++|++++|.+. +.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|+
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            4556666666666666666666667777777766665 45555443 666677777777666665554  3456677777


Q ss_pred             CCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 045210          303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ  382 (873)
Q Consensus       303 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  382 (873)
                      +++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            77776666666666667777777777776666666666667777777777776666666666666655444444444433


Q ss_pred             hhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccC
Q 045210          383 EISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLS  462 (873)
Q Consensus       383 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  462 (873)
                                                   .+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|
T Consensus       227 -----------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        227 -----------------------------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             -----------------------------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence                                         333344444444444444444444444444444444444444444444433


Q ss_pred             hhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhc
Q 045210          463 ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKS  542 (873)
Q Consensus       463 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~  542 (873)
                      . .+.++++|+.|++++|.+.                         +.+|.++..+++|+.|++++|.+.+.+|..+ ..
T Consensus       278 ~-~l~~l~~L~~L~Ls~n~l~-------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~  330 (968)
T PLN00113        278 P-SIFSLQKLISLDLSDNSLS-------------------------GEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TS  330 (968)
T ss_pred             h-hHhhccCcCEEECcCCeec-------------------------cCCChhHcCCCCCcEEECCCCccCCcCChhH-hc
Confidence            3 2344444444444433322                         2244445555666666666666665555443 33


Q ss_pred             CCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceE
Q 045210          543 LSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVL  621 (873)
Q Consensus       543 l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L  621 (873)
                      +++|+.|++++|.+.+.+| .+..+++|                     +.|++++|++++.+|..++.    +++|+.|
T Consensus       331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L---------------------~~L~Ls~n~l~~~~p~~~~~----~~~L~~L  385 (968)
T PLN00113        331 LPRLQVLQLWSNKFSGEIPKNLGKHNNL---------------------TVLDLSTNNLTGEIPEGLCS----SGNLFKL  385 (968)
T ss_pred             CCCCCEEECcCCCCcCcCChHHhCCCCC---------------------cEEECCCCeeEeeCChhHhC----cCCCCEE
Confidence            5566666666666665555 34444444                     44445555555555655443    7889999


Q ss_pred             eccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeec
Q 045210          622 NLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFV  701 (873)
Q Consensus       622 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  701 (873)
                      ++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.
T Consensus       386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~  465 (968)
T PLN00113        386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF  465 (968)
T ss_pred             ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeee
Q 045210          702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVY  781 (873)
Q Consensus       702 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~  781 (873)
                      +.+|..+.  .++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|+.++++++|                  
T Consensus       466 ~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L------------------  525 (968)
T PLN00113        466 GGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL------------------  525 (968)
T ss_pred             eecCcccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC------------------
Confidence            99998764  7899999999999999999999999999999999999999999999887776                  


Q ss_pred             cccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccc
Q 045210          782 KKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKN  861 (873)
Q Consensus       782 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  861 (873)
                                     +.|+|++|.++|.+|..++.+++|++|+|++|+++|.+|..++.+++|+.+|+++|+++|.+|..
T Consensus       526 ---------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        526 ---------------VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             ---------------CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence                           89999999999999999999999999999999999999999999999999999999999999965

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-39  Score=320.86  Aligned_cols=489  Identities=26%  Similarity=0.396  Sum_probs=300.0

Q ss_pred             CCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcC
Q 045210          244 ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLE  323 (873)
Q Consensus       244 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  323 (873)
                      ..-..|+.+.+++|.+.  .+.+.+.++..|.++++.+|++. ..|.+++.+..++.++.++|.+. .+|+.++.+.+|+
T Consensus        42 W~qv~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   42 WEQVDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV  117 (565)
T ss_pred             hhhcchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence            33445666666666653  34455566666666666666666 55666666666666666666666 5666666666666


Q ss_pred             EEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEE
Q 045210          324 YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD  403 (873)
Q Consensus       324 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~  403 (873)
                      .+++++|.+. .+|+.++.+-.+..++..+|+++. .|..+..+.++..+++.+|++...++....+      ..|+++|
T Consensus       118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m------~~L~~ld  189 (565)
T KOG0472|consen  118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIAM------KRLKHLD  189 (565)
T ss_pred             hhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHHH------HHHHhcc
Confidence            7777666666 455566666666666666666653 4555566665555666665555554444332      1155555


Q ss_pred             ccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeee
Q 045210          404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLV  483 (873)
Q Consensus       404 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  483 (873)
                      ...|-+.. +|+.++.+.+|..|++..|++. ..| .|..|..|++++++.|++. .+|.....                
T Consensus       190 ~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~----------------  249 (565)
T KOG0472|consen  190 CNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLK----------------  249 (565)
T ss_pred             cchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhc----------------
Confidence            55544432 4444555555555555555555 344 4555555555555555554 33433333                


Q ss_pred             ccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCc
Q 045210          484 LKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDL  563 (873)
Q Consensus       484 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~  563 (873)
                                                       +++++..||+++|++. +.|+.+.. +++|++||+++|.+++..+.+
T Consensus       250 ---------------------------------~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is~Lp~sL  294 (565)
T KOG0472|consen  250 ---------------------------------HLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDISSLPYSL  294 (565)
T ss_pred             ---------------------------------ccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccccCCccc
Confidence                                             4555666666666665 56666544 567888888888888777788


Q ss_pred             cccCCCCeEeCCCCCCCCC---CCCCC--CCCcEEE--ccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhh
Q 045210          564 NDAAQLETLDLSSNSLSGP---LPLIP--SSLTTLD--LSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW  636 (873)
Q Consensus       564 ~~~~~L~~L~l~~n~l~~~---~~~~~--~~L~~L~--l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l  636 (873)
                      +++ +|+.|.+.+|++...   +-...  .-|++|.  +.+-.++..  +.        .+-..-+    ...+..| ..
T Consensus       295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s--e~--------~~e~~~t----~~~~~~~-~~  358 (565)
T KOG0472|consen  295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS--EG--------GTETAMT----LPSESFP-DI  358 (565)
T ss_pred             ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC--cc--------cccccCC----CCCCccc-ch
Confidence            888 888888888876421   10000  0011110  000000000  00        0000000    0001111 12


Q ss_pred             hccccCcEEEcCCCcCccCCcccccCCCC---ccEEEccCCcccccCCcccccCCCCcE-EEccCCeecccCChhHHhhc
Q 045210          637 MNWSFLFFLHLGENDFTGNLPTSLGTLSS---LQILHLRGNRFSGKIPVSLQNCTELRL-FDISENEFVGNIPTWIGERL  712 (873)
Q Consensus       637 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~~~p~~l~~l~~L~~-L~Ls~n~l~~~ip~~~~~~l  712 (873)
                      ..+.+.+.|++++-+++ .+|+....-..   ....++++|++. .+|..+..+..+.+ +++++|.+. -+|..+.. +
T Consensus       359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~-l  434 (565)
T KOG0472|consen  359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQ-L  434 (565)
T ss_pred             hhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHh-h
Confidence            23345566666666666 45544332222   566777777776 66766666655554 445555544 67777765 8


Q ss_pred             ccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCC
Q 045210          713 SGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGY  792 (873)
Q Consensus       713 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (873)
                      ++|..|++++|.+. .+|.+++.+..|+.||++.|.|. .+|+++..+..+                             
T Consensus       435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l-----------------------------  483 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL-----------------------------  483 (565)
T ss_pred             hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH-----------------------------
Confidence            88888888887766 77888888988999999999887 888888766554                             


Q ss_pred             CccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210          793 PYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       793 ~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  855 (873)
                          +.+-.++|++...-|..+.++.+|.+|||.+|.+. .||..+++|++|+.|++++|+|.
T Consensus       484 ----Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  484 ----ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ----HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                45556678887544555999999999999999998 78999999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.9e-39  Score=319.88  Aligned_cols=482  Identities=28%  Similarity=0.402  Sum_probs=300.1

Q ss_pred             CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210          121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK  200 (873)
Q Consensus       121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~  200 (873)
                      .-++.+++++|.+..  +.+.+.++..|.+|++++|+++ ..|.+++.+..++.++.++|++..+|..    +..+.+|+
T Consensus        45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~----i~s~~~l~  117 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQ----IGSLISLV  117 (565)
T ss_pred             cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHH----Hhhhhhhh
Confidence            446667777777664  4455677777777777777765 4566677777777777777777666654    44444555


Q ss_pred             EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210          201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS  280 (873)
Q Consensus       201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  280 (873)
                      +++.++|.+...                           ++.++.+-.|+.++..+|++  .+.|+.+..+.+|..+++.
T Consensus       118 ~l~~s~n~~~el---------------------------~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l~~~  168 (565)
T KOG0472|consen  118 KLDCSSNELKEL---------------------------PDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKLDLE  168 (565)
T ss_pred             hhhccccceeec---------------------------CchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHhhcc
Confidence            555554444433                           33455666677777777777  3567777788888888888


Q ss_pred             CCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcc
Q 045210          281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI  360 (873)
Q Consensus       281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  360 (873)
                      +|++....|+ .-+++.|+++|...|.+. .+|..++.+.+|..|++..|++. .+| .|++|..|++++++.|+++. +
T Consensus       169 ~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-l  243 (565)
T KOG0472|consen  169 GNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-L  243 (565)
T ss_pred             ccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-h
Confidence            8888744444 444888899988888776 68888888889999999999887 666 68888899999998888874 4


Q ss_pred             hhh-hhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccc
Q 045210          361 PRA-FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPL  439 (873)
Q Consensus       361 ~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  439 (873)
                      |.+ .+.++++..|++.+|+++                             . .|+.+..+++|.+||+++|.++ ..|.
T Consensus       244 pae~~~~L~~l~vLDLRdNklk-----------------------------e-~Pde~clLrsL~rLDlSNN~is-~Lp~  292 (565)
T KOG0472|consen  244 PAEHLKHLNSLLVLDLRDNKLK-----------------------------E-VPDEICLLRSLERLDLSNNDIS-SLPY  292 (565)
T ss_pred             HHHHhcccccceeeeccccccc-----------------------------c-CchHHHHhhhhhhhcccCCccc-cCCc
Confidence            444 446665555555555443                             3 4566777788888888888888 5777


Q ss_pred             cccCCCCCCEEEccCccCCcccChhhhhccc--ccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhc
Q 045210          440 SLGQLSSLRYLDVSTNNLNGTLSENHFANLT--KLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLS  517 (873)
Q Consensus       440 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  517 (873)
                      +++++ .|+.|.+.+|++. .+....+..-+  -|+++.-   .+...               .++.-. ++.       
T Consensus       293 sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs---~~~~d---------------glS~se-~~~-------  344 (565)
T KOG0472|consen  293 SLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS---KIKDD---------------GLSQSE-GGT-------  344 (565)
T ss_pred             ccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH---hhccC---------------CCCCCc-ccc-------
Confidence            88888 8888888888875 33322111000  0000000   00000               000000 000       


Q ss_pred             CCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccC
Q 045210          518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSS  597 (873)
Q Consensus       518 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  597 (873)
                                  .-.+..|                    .+..|+.....+                     .+.|+++.
T Consensus       345 ------------e~~~t~~--------------------~~~~~~~~~~i~---------------------tkiL~~s~  371 (565)
T KOG0472|consen  345 ------------ETAMTLP--------------------SESFPDIYAIIT---------------------TKILDVSD  371 (565)
T ss_pred             ------------cccCCCC--------------------CCcccchhhhhh---------------------hhhhcccc
Confidence                        0000000                    011112222222                     33333333


Q ss_pred             ccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcE-EEcCCCcCccCCcccccCCCCccEEEccCCcc
Q 045210          598 NFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF-LHLGENDFTGNLPTSLGTLSSLQILHLRGNRF  676 (873)
Q Consensus       598 n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~-L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  676 (873)
                      -+++. +|...+++ +.-.-...++++.|++. ++|..+..+..+.. +.+++|.+. -+|..+..+++|..|++++|.+
T Consensus       372 ~qlt~-VPdEVfea-~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~L  447 (565)
T KOG0472|consen  372 KQLTL-VPDEVFEA-AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLL  447 (565)
T ss_pred             ccccc-CCHHHHHH-hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchh
Confidence            33332 33333221 11123566777777776 66666666655544 344444443 5666677777777777777766


Q ss_pred             cccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChh
Q 045210          677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC  756 (873)
Q Consensus       677 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  756 (873)
                      . .+|..++.+..|+.||++.|+|. .+|..+.. +..++.+-.++|++....|..+.++.+|..|||.+|.+. .||+.
T Consensus       448 n-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~  523 (565)
T KOG0472|consen  448 N-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI  523 (565)
T ss_pred             h-hcchhhhhhhhhheecccccccc-cchHHHhh-HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence            5 67777777777777777777776 67777765 666666667777777666666777777777777777776 77777


Q ss_pred             hhhhhcC
Q 045210          757 INNLAGM  763 (873)
Q Consensus       757 l~~l~~L  763 (873)
                      +|+++++
T Consensus       524 LgnmtnL  530 (565)
T KOG0472|consen  524 LGNMTNL  530 (565)
T ss_pred             hccccce
Confidence            7777766

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=299.07  Aligned_cols=365  Identities=28%  Similarity=0.349  Sum_probs=271.3

Q ss_pred             CCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEE
Q 045210          123 LIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHL  202 (873)
Q Consensus       123 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L  202 (873)
                      -+.||+++|.++.+ -+.+|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|+++..+.   ++-++.|+.|
T Consensus        80 t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~---L~~l~alrsl  154 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEE---LSALPALRSL  154 (873)
T ss_pred             eeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHH---HHhHhhhhhh
Confidence            45688888888776 4667778888888888887765 56766666667888888888887776664   4667778888


Q ss_pred             eCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCC
Q 045210          203 DLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTN  282 (873)
Q Consensus       203 ~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  282 (873)
                      ||+.|.++.++..  .+..-.++++|+|++|+|+.+....|..+.+|..|.|+.|+++ .--+..+.++++|+.|+|..|
T Consensus       155 DLSrN~is~i~~~--sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  155 DLSRNLISEIPKP--SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhchhhcccCC--CCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence            8888888777532  3344467888888888888888888888888888888888886 333445566888888888888


Q ss_pred             cCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchh
Q 045210          283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPR  362 (873)
Q Consensus       283 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  362 (873)
                      ++.-.--..|.++++|+.|.+..|.+...-...|..+.++++|+|+.|+++..-..++-+++.|+.|++++|.|..+.++
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence            87643355677888888888888887766666677788888888888888766667777888888888888888877778


Q ss_pred             hhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcccc---c
Q 045210          363 AFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP---L  439 (873)
Q Consensus       363 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~  439 (873)
                      .+..+++|+.|+|+.|+++...+..+..+..     |++|.|++|++.......|..+++|++|||+.|.+...+.   .
T Consensus       312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-----Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~  386 (873)
T KOG4194|consen  312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-----LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV  386 (873)
T ss_pred             hhhhcccceeEeccccccccCChhHHHHHHH-----hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence            8888888888888888888877777766543     8888888888877666677778888888888887765443   3


Q ss_pred             cccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEecc
Q 045210          440 SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLS  503 (873)
Q Consensus       440 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  503 (873)
                      .|..+++|+.|.+.+|++. .|+..+|.+++.|++|++.+|.+... -+..+.+. .|++|.+.
T Consensus       387 ~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSI-q~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  387 AFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASI-QPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceee-cccccccc-hhhhhhhc
Confidence            4667888888888888886 77777888888888888888876543 22333333 56665544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-34  Score=297.44  Aligned_cols=364  Identities=25%  Similarity=0.327  Sum_probs=322.3

Q ss_pred             ccccceeeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCC
Q 045210          104 YERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLG  183 (873)
Q Consensus       104 ~~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  183 (873)
                      +..+.+...-+..|.++++|+.+++.+|.++.  ||.+.+...+|+.|+|.+|.++..-..+++.++.||.|||+.|.|+
T Consensus        85 lsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is  162 (873)
T KOG4194|consen   85 LSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS  162 (873)
T ss_pred             ccccccccCcHHHHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence            33345555555678899999999999999985  7998888899999999999999888889999999999999999999


Q ss_pred             CCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCc
Q 045210          184 GLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSS  263 (873)
Q Consensus       184 ~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  263 (873)
                      .++...|   .+-.++++|+|++|.|+.+...  .+..+.+|.+|.|+.|+++..++..|.++++|+.|+|..|++. ..
T Consensus       163 ~i~~~sf---p~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-iv  236 (873)
T KOG4194|consen  163 EIPKPSF---PAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IV  236 (873)
T ss_pred             cccCCCC---CCCCCceEEeeccccccccccc--cccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-ee
Confidence            9988764   5667899999999999998654  4567789999999999999999999999999999999999986 23


Q ss_pred             hhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCC
Q 045210          264 IVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNL  343 (873)
Q Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  343 (873)
                      -.-.+.++++|+.|.+..|.+...-..+|..+.++++|+|..|++...-..|+.+++.|+.|++++|.|...-++.+.-+
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            24578899999999999999997777889999999999999999997778899999999999999999998889999999


Q ss_pred             CCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCcccc---ccCCC
Q 045210          344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN---QIGNF  420 (873)
Q Consensus       344 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l~~l  420 (873)
                      ++|++|+|++|+++...+..|..+..|++|+|++|.+.......|.....     |++|||+.|.+++.+.+   .|..+
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss-----L~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS-----LHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh-----hhhhcCcCCeEEEEEecchhhhccc
Confidence            99999999999999999999999999999999999999888777776643     99999999999876543   46779


Q ss_pred             CCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCee
Q 045210          421 KNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL  482 (873)
Q Consensus       421 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~  482 (873)
                      +.|+.|++.+|++......+|..++.|++|+|.+|.+. .|...+|..+ .|+.|.+....+
T Consensus       392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             hhhhheeecCceeeecchhhhccCcccceecCCCCcce-eecccccccc-hhhhhhhcccce
Confidence            99999999999999666678999999999999999997 6777789888 888887765444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=5.6e-35  Score=318.78  Aligned_cols=439  Identities=29%  Similarity=0.419  Sum_probs=245.8

Q ss_pred             ccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEcc
Q 045210          249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS  328 (873)
Q Consensus       249 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  328 (873)
                      ++.|++..|.+-+.. .+.+.+..+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.
T Consensus        23 ~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            666666666554322 344555556777777777665 56666777777777777777766 566667777777777777


Q ss_pred             CCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcc
Q 045210          329 YNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNT  408 (873)
Q Consensus       329 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  408 (873)
                      +|.+. ..|..+..+.+|++|+++.|.+. .+|..+..+..+..+..++|                             .
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N-----------------------------~  148 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNN-----------------------------E  148 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcc-----------------------------h
Confidence            77766 67777777777777777777775 35666666655444444444                             1


Q ss_pred             cCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccC
Q 045210          409 LFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVS  488 (873)
Q Consensus       409 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  488 (873)
                      ....    ++... .+.+++..|.+.+.++..+..++.  .|+|.+|.+. ..   .+..+..|+.+....|.+...   
T Consensus       149 ~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l---  214 (1081)
T KOG0618|consen  149 KIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSEL---  214 (1081)
T ss_pred             hhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceE---
Confidence            1111    11111 666666666666666666665555  5777777654 11   344445555444444332211   


Q ss_pred             CCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCC
Q 045210          489 PSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQ  568 (873)
Q Consensus       489 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  568 (873)
                                                          +++               .++++.|+.+.|.++           
T Consensus       215 ------------------------------------~~~---------------g~~l~~L~a~~n~l~-----------  232 (1081)
T KOG0618|consen  215 ------------------------------------EIS---------------GPSLTALYADHNPLT-----------  232 (1081)
T ss_pred             ------------------------------------Eec---------------CcchheeeeccCcce-----------
Confidence                                                000               123334444444333           


Q ss_pred             CCeEeCCCCCCCCCCCC-CCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEc
Q 045210          569 LETLDLSSNSLSGPLPL-IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHL  647 (873)
Q Consensus       569 L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l  647 (873)
                                  ...+. .+.++++++++.|++++ +|++++.    +.+|+.++..+|+++ .+|..+...++|+.|.+
T Consensus       233 ------------~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~----~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  233 ------------TLDVHPVPLNLQYLDISHNNLSN-LPEWIGA----CANLEALNANHNRLV-ALPLRISRITSLVSLSA  294 (1081)
T ss_pred             ------------eeccccccccceeeecchhhhhc-chHHHHh----cccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence                        22221 24566666666666654 3354443    677777777777774 66666777777777777


Q ss_pred             CCCcCccCCcccccCCCCccEEEccCCcccccCCcc-cccCC-CCcEEEccCCeecccCChhHHhhcccCcEEEccCCee
Q 045210          648 GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS-LQNCT-ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF  725 (873)
Q Consensus       648 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l  725 (873)
                      ..|.+. -+|.....+++|++|+|..|++. ..|.. +.-.. +|..|+.+.|++. ..|..-....+.|+.|++.+|.+
T Consensus       295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcc
Confidence            777776 45555666777777777777766 33332 22222 2455555555554 44433333445555566666665


Q ss_pred             eeeCCcccCCCCCCCEEeCCCCccccccCh-hhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCC
Q 045210          726 HGFFPPELCGLASLKILDLSSNNLTGVIPR-CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSAN  804 (873)
Q Consensus       726 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n  804 (873)
                      +....+.+.+...|+.|+|++|.+. ++|. ++.++..|                                 ++|+||+|
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~L---------------------------------eeL~LSGN  417 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEEL---------------------------------EELNLSGN  417 (1081)
T ss_pred             cccchhhhccccceeeeeecccccc-cCCHHHHhchHHh---------------------------------HHHhcccc
Confidence            5555555555556666666666555 3343 33333333                                 45555555


Q ss_pred             cccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210          805 YFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       805 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  855 (873)
                      +++ .+|..+.++..|++|...+|++. ..| .+.++++|+.+|+|.|+++
T Consensus       418 kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  418 KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            555 45555555555555555555554 344 4445555555555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-34  Score=315.71  Aligned_cols=449  Identities=27%  Similarity=0.347  Sum_probs=223.8

Q ss_pred             ecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccc
Q 045210          112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFG  191 (873)
Q Consensus       112 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~  191 (873)
                      .||..+..-..+..|++..|.+...+ -+++.+.-+|+.||+++|.+ +..|..+..+.+|+.|+++.|.|..+|..   
T Consensus        12 ~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~~vp~s---   86 (1081)
T KOG0618|consen   12 LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIRSVPSS---   86 (1081)
T ss_pred             ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHhhCchh---
Confidence            34444444445666666666554432 23444444566666666654 34555566666666666666655554422   


Q ss_pred             cccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCC
Q 045210          192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGL  271 (873)
Q Consensus       192 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  271 (873)
                       +.                          ++.+|+++.|.+|.+... |..+..+++|++||+++|.+  +.+|..+..+
T Consensus        87 -~~--------------------------~~~~l~~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f--~~~Pl~i~~l  136 (1081)
T KOG0618|consen   87 -CS--------------------------NMRNLQYLNLKNNRLQSL-PASISELKNLQYLDLSFNHF--GPIPLVIEVL  136 (1081)
T ss_pred             -hh--------------------------hhhcchhheeccchhhcC-chhHHhhhcccccccchhcc--CCCchhHHhh
Confidence             33                          334444444444433322 45566677777777777777  4566666667


Q ss_pred             CCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeC
Q 045210          272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL  351 (873)
Q Consensus       272 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  351 (873)
                      ..+..+..++|.....    ++... ++.+++..|.+.+.++..+..+..  .|+|.+|.+.   ...+..+.+|+.+..
T Consensus       137 t~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c  206 (1081)
T KOG0618|consen  137 TAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHC  206 (1081)
T ss_pred             hHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhh
Confidence            7777777776622211    22212 666666666666666666655555  5677777665   123556666666666


Q ss_pred             CCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCC
Q 045210          352 SFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFN  431 (873)
Q Consensus       352 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  431 (873)
                      ..|++....    -.-++++.|+.+.|.++.......       +..++.++++.|++++. |++++.+++|+.++..+|
T Consensus       207 ~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p~-------p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N  274 (1081)
T KOG0618|consen  207 ERNQLSELE----ISGPSLTALYADHNPLTTLDVHPV-------PLNLQYLDISHNNLSNL-PEWIGACANLEALNANHN  274 (1081)
T ss_pred             hhcccceEE----ecCcchheeeeccCcceeeccccc-------cccceeeecchhhhhcc-hHHHHhcccceEecccch
Confidence            666655321    112455555555555542111110       02245555555554442 244455555555555555


Q ss_pred             ccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCc
Q 045210          432 NISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQF  511 (873)
Q Consensus       432 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  511 (873)
                      +++ .+|..+....+|+.|.+..|.+. .                                                  +
T Consensus       275 ~l~-~lp~ri~~~~~L~~l~~~~nel~-y--------------------------------------------------i  302 (1081)
T KOG0618|consen  275 RLV-ALPLRISRITSLVSLSAAYNELE-Y--------------------------------------------------I  302 (1081)
T ss_pred             hHH-hhHHHHhhhhhHHHHHhhhhhhh-h--------------------------------------------------C
Confidence            543 44444444444444444444443 2                                                  2


Q ss_pred             chhhhcCCcccEEEccCCCCCcccChhHHhcCCC-CcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCC---
Q 045210          512 PQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQ-INYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLI---  586 (873)
Q Consensus       512 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~---  586 (873)
                      |......+.|+.|++..|++. .+|+.++..... ++.++.+.|++..... +-...+.|+.|++.+|.++......   
T Consensus       303 p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~  381 (1081)
T KOG0618|consen  303 PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN  381 (1081)
T ss_pred             CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence            333444556666666666664 455555544333 6666666666553322 2223344555555555555432211   


Q ss_pred             CCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCc
Q 045210          587 PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSL  666 (873)
Q Consensus       587 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  666 (873)
                      ...|+.|++++|.+... |..   .+.++..|++|++|+|+++ .+|+++..+..|+.|...+|++. .+| .+..++.|
T Consensus       382 ~~hLKVLhLsyNrL~~f-pas---~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSF-PAS---KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             ccceeeeeecccccccC-CHH---HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence            33444444444443321 111   1223444444444444444 34444444444444444444444 333 34444444


Q ss_pred             cEEEccCCccc
Q 045210          667 QILHLRGNRFS  677 (873)
Q Consensus       667 ~~L~L~~n~l~  677 (873)
                      +.+|++.|+++
T Consensus       455 ~~lDlS~N~L~  465 (1081)
T KOG0618|consen  455 KVLDLSCNNLS  465 (1081)
T ss_pred             eEEecccchhh
Confidence            44444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=4.2e-32  Score=282.51  Aligned_cols=364  Identities=23%  Similarity=0.344  Sum_probs=265.6

Q ss_pred             ccEEEccCcccCC-ccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEc
Q 045210          399 LESLDLSNNTLFG-LLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDA  477 (873)
Q Consensus       399 L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  477 (873)
                      .+-+|+++|.++| ..|.....++.++.|.|...++. .+|+.++.+.+|++|.+.+|++.....  .+..++.|+.+.+
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG--ELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG--ELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh--hhccchhhHHHhh
Confidence            5566667776663 56666677777777777777766 667777777777777777777653222  3666777777777


Q ss_pred             CCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccc
Q 045210          478 SGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIF  557 (873)
Q Consensus       478 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~  557 (873)
                      ..|++....+++.......|+.++++.|.+. +.|..+...+++-.|++++|+|. .||..++-++..|-+|++++|++.
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence            7777766666666666666777777766654 56777888888889999999885 788888888888888999999888


Q ss_pred             cccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCccc-CCCChhh
Q 045210          558 GQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS-GEIPDCW  636 (873)
Q Consensus       558 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l  636 (873)
                      ..+|.+..+..|++|++++|++...-                         -..+..+++|+.|.+++.+-+ ..+|..+
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-------------------------LrQLPsmtsL~vLhms~TqRTl~N~Ptsl  218 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLNHFQ-------------------------LRQLPSMTSLSVLHMSNTQRTLDNIPTSL  218 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhhHHH-------------------------HhcCccchhhhhhhcccccchhhcCCCch
Confidence            77778888888888888887664210                         001222566777777776543 4678888


Q ss_pred             hccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCc
Q 045210          637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGII  716 (873)
Q Consensus       637 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  716 (873)
                      ..+.+|..++++.|.+. ..|+.+.++++|+.|+|++|+++ .+....+...+|++|++|.|+++ .+|..+.+ ++.|+
T Consensus       219 d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~  294 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLT  294 (1255)
T ss_pred             hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHH
Confidence            88888888888888887 67888888888888888888887 44444555667888888888887 78887776 78888


Q ss_pred             EEEccCCeeee-eCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCcc
Q 045210          717 LLSLRANQFHG-FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYY  795 (873)
Q Consensus       717 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (873)
                      .|.+.+|+++- -||.+++.+.+|+.+..++|.+. .+|+.+..|..|                                
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL--------------------------------  341 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL--------------------------------  341 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH--------------------------------
Confidence            88888877642 46777777777777777777776 677777766665                                


Q ss_pred             ceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc
Q 045210          796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS  831 (873)
Q Consensus       796 L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~  831 (873)
                       +.|.|++|++- .+|+.+.-|+.|+.||+..|.-.
T Consensus       342 -~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  342 -QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             -HHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence             56777777776 67777777777777777777655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=7.8e-32  Score=280.56  Aligned_cols=183  Identities=27%  Similarity=0.439  Sum_probs=122.6

Q ss_pred             cCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210          118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS  197 (873)
Q Consensus       118 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~  197 (873)
                      +-++..|-.|+++|.++|...|..+..++.++.|.|....+. .+|++++.|.+|++|.+++|++.++..          
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG----------   72 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG----------   72 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh----------
Confidence            346778888999999998778888888999999998887754 578888888888888888877654432          


Q ss_pred             CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEE
Q 045210          198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL  277 (873)
Q Consensus       198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  277 (873)
                                                                  .++.++.||.+++..|++....+|..+..+..|+.|
T Consensus        73 --------------------------------------------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l  108 (1255)
T KOG0444|consen   73 --------------------------------------------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL  108 (1255)
T ss_pred             --------------------------------------------hhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence                                                        234455666666666666656666666666677777


Q ss_pred             EccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCC
Q 045210          278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE  357 (873)
Q Consensus       278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  357 (873)
                      ||+.|++. ..|..+..-+++-+|++++|+|..+....+.+++.|-.|||++|++. .+|..+..+..|++|+|++|.+.
T Consensus       109 DLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  109 DLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             ecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence            77777666 55666666666666666666666332233445555566666666555 44445555555555555555543

>PLN03210 Resistant to P

Probab=99.89  E-value=9.3e-22  Score=242.74  Aligned_cols=299  Identities=25%  Similarity=0.259  Sum_probs=136.7

Q ss_pred             cccCCCCCCCEEeCCCCcc------CccccccccCCC-CCCEEEccCccCCcccChhhhhcccccceEEcCCCeeecccc
Q 045210          415 NQIGNFKNLDSLDLSFNNI------SGHIPLSLGQLS-SLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVV  487 (873)
Q Consensus       415 ~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  487 (873)
                      .+|..|++|+.|.+..+..      ...+|..+..++ +|+.|++.++++. .+|.. | ...+|+.|++.++.+.    
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~-f-~~~~L~~L~L~~s~l~----  624 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSN-F-RPENLVKLQMQGSKLE----  624 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCc-C-CccCCcEEECcCcccc----
Confidence            3466677777776654432      223455555443 4666666666654 44432 2 3345555555554432    


Q ss_pred             CCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-Ccccc
Q 045210          488 SPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDA  566 (873)
Q Consensus       488 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~  566 (873)
                                            .++..+..+++|+.++++++.....+|.  +..+++|++|++++|.....+| .+..+
T Consensus       625 ----------------------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        625 ----------------------KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             ----------------------ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhcc
Confidence                                  1223334455555555555544344443  2334555555555554444444 45555


Q ss_pred             CCCCeEeCCCCCCCCCCCCC--CCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcE
Q 045210          567 AQLETLDLSSNSLSGPLPLI--PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF  644 (873)
Q Consensus       567 ~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  644 (873)
                      ++|+.|++++|...+.+|..  +++|+.|++++|...+.+|..       ..+|++|++++|.+. .+|..+ .+++|+.
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~-------~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~  751 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI-------STNISWLDLDETAIE-EFPSNL-RLENLDE  751 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc-------cCCcCeeecCCCccc-cccccc-ccccccc
Confidence            55555555555444444432  344445555444333333321       234555555555544 334332 3455555


Q ss_pred             EEcCCCcCcc-------CCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcE
Q 045210          645 LHLGENDFTG-------NLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL  717 (873)
Q Consensus       645 L~l~~n~l~~-------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  717 (873)
                      |++.++....       ..|......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+  .+++|+.
T Consensus       752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~  829 (1153)
T PLN03210        752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLES  829 (1153)
T ss_pred             ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCE
Confidence            5555433210       001111122344555555544444444444445555555554444333444433  1444444


Q ss_pred             EEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhh
Q 045210          718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN  759 (873)
Q Consensus       718 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  759 (873)
                      |++++|.....+|..   .++|+.|+|++|.++ .+|.+++.
T Consensus       830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~  867 (1153)
T PLN03210        830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEK  867 (1153)
T ss_pred             EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhc
Confidence            444444333333321   133444444444444 34444333

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=1.7e-21  Score=240.39  Aligned_cols=343  Identities=21%  Similarity=0.231  Sum_probs=216.1

Q ss_pred             hhhhhcCCCCCEEEccCCcCc------chhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccC
Q 045210          361 PRAFKRLRHLRSVNLSGNKLS------QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS  434 (873)
Q Consensus       361 ~~~l~~l~~L~~L~L~~n~l~------~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  434 (873)
                      +.+|.++++|+.|.+..+...      ...+..+..   .+ ..|+.|.+.++.+.. +|..+ ...+|++|++.+|++.
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~---lp-~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~  624 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY---LP-PKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE  624 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhh---cC-cccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc
Confidence            345666667776666544321      111111111   11 226666666666544 34444 3567777777777666


Q ss_pred             ccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchh
Q 045210          435 GHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW  514 (873)
Q Consensus       435 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  514 (873)
                       .++..+..+++|+.|+++++...+.+|.  +..+++|+.|++++|                         .....+|..
T Consensus       625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c-------------------------~~L~~lp~s  676 (1153)
T PLN03210        625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC-------------------------SSLVELPSS  676 (1153)
T ss_pred             -ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC-------------------------CCccccchh
Confidence             4566666677777777776654445543  444555555555444                         333345555


Q ss_pred             hhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCC--CCCCcE
Q 045210          515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLI--PSSLTT  592 (873)
Q Consensus       515 l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~  592 (873)
                      +..+++|+.|++++|...+.+|...  .+++|+.|++++|...+.+|..  ..+|+.|++++|.+.. +|..  +++|+.
T Consensus       677 i~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~~l~~L~~  751 (1153)
T PLN03210        677 IQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNLRLENLDE  751 (1153)
T ss_pred             hhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-cccccccccccc
Confidence            5666666666666665555555433  3556666666666554444432  2456666666666542 3321  355666


Q ss_pred             EEccCccCc---CcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEE
Q 045210          593 LDLSSNFLS---GTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQIL  669 (873)
Q Consensus       593 L~l~~n~l~---~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  669 (873)
                      |.+.++...   +.+...........++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|
T Consensus       752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L  830 (1153)
T PLN03210        752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL  830 (1153)
T ss_pred             ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE
Confidence            665553211   10000000011225688999999998888889999999999999999987666788766 68899999


Q ss_pred             EccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210          670 HLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN  748 (873)
Q Consensus       670 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  748 (873)
                      ++++|.....+|..   .++|+.|++++|.+. .+|.++.. +++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       831 ~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        831 DLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            99998776666653   367889999999987 78988875 8999999999876666788888888999999998885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=4.7e-22  Score=226.42  Aligned_cols=268  Identities=27%  Similarity=0.380  Sum_probs=191.5

Q ss_pred             cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCcc
Q 045210          520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF  599 (873)
Q Consensus       520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  599 (873)
                      .-..|+++++.++ .+|..+.   ++|+.|++.+|+++. +|.  .+++|++|++++|+++. +|..+++|+.|++++|.
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~  273 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP  273 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCc-ccCcccccceeeccCCc
Confidence            4567788888776 5676554   367888888888775 342  24678888888888774 46667788888888888


Q ss_pred             CcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCccccc
Q 045210          600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK  679 (873)
Q Consensus       600 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  679 (873)
                      ++. +|..       ..+|+.|++++|+++ .+|.   ..++|+.|++++|++++ +|..   ..+|+.|++++|++++ 
T Consensus       274 L~~-Lp~l-------p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        274 LTH-LPAL-------PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             hhh-hhhc-------hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence            763 3322       346778888888887 4454   24678888888888874 4542   2457788888888873 


Q ss_pred             CCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhh
Q 045210          680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN  759 (873)
Q Consensus       680 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  759 (873)
                      +|..   ..+|+.|++++|+++ .+|..    .++|+.|++++|++.+ +|..   .++|+.|++++|+++ .+|..   
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---  400 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---  400 (788)
T ss_pred             cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---
Confidence            5532   247888888888888 56652    4677888888888874 5543   356888888888887 35532   


Q ss_pred             hhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCcccc
Q 045210          760 LAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMG  839 (873)
Q Consensus       760 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  839 (873)
                                                       +..|+.|++|+|+++ .+|...   .+|+.|++++|+++ .+|..++
T Consensus       401 ---------------------------------~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~  442 (788)
T PRK15387        401 ---------------------------------PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLI  442 (788)
T ss_pred             ---------------------------------ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHh
Confidence                                             123478888888888 477543   45678888888887 6888888


Q ss_pred             CCCCCCeEeccCCccccccccccccCC
Q 045210          840 AMKSVEALDFSSNRLQGEIPKNMVNLE  866 (873)
Q Consensus       840 ~l~~L~~L~ls~N~l~g~iP~~l~~l~  866 (873)
                      ++++|+.|++++|+++|.+|..+..++
T Consensus       443 ~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        443 HLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             hccCCCeEECCCCCCCchHHHHHHHHh
Confidence            888888888888888888888775443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=9.5e-24  Score=210.07  Aligned_cols=275  Identities=24%  Similarity=0.249  Sum_probs=198.9

Q ss_pred             CCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccC-CcCCCCChhhhcCCCCCCEE
Q 045210          223 HSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST-NNFQGAVPDAIQNSTSLQHL  301 (873)
Q Consensus       223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L  301 (873)
                      +.-.+++|..|.|+.+++.+|+.+++||.|||++|.++ ..-|..+.++.+|..|.+.+ |+|+..-...|+++..++.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            35677888899999999999999999999999999987 55578888888887777666 88886666788899999999


Q ss_pred             ECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCC------------CcchhhhhcCCC
Q 045210          302 DLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE------------SKIPRAFKRLRH  369 (873)
Q Consensus       302 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~~~~l~~l~~  369 (873)
                      .+.-|++.-...+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+.            ...|..++...-
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            99999988777888999999999999999888433347888889999988887632            112233444444


Q ss_pred             CCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCc-cccccCCCCCCCEEeCCCCccCccccccccCCCCCC
Q 045210          370 LRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGL-LTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLR  448 (873)
Q Consensus       370 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  448 (873)
                      .....+.+.++.......+....    ..+.+-..+.+...+. ....|..+++|++|++++|++++.-+.+|.....++
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~----esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSL----ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhH----HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence            44444445544444333332110    0011112223333333 334688999999999999999988899999999999


Q ss_pred             EEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccc
Q 045210          449 YLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS  504 (873)
Q Consensus       449 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  504 (873)
                      +|.|..|++. .+....|.++..|+.|++++|+++.. .+..+.+...+.++.+-.
T Consensus       302 eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~-~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  302 ELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTV-APGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             hhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEE-ecccccccceeeeeehcc
Confidence            9999999987 67777899999999999999988755 333344444444444443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-23  Score=209.76  Aligned_cols=426  Identities=23%  Similarity=0.222  Sum_probs=252.8

Q ss_pred             CcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccC-CcCcchhhHHHHHhhhcccccc
Q 045210          321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG-NKLSQEISQVLDMFSACASNVL  399 (873)
Q Consensus       321 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~L  399 (873)
                      .-..++|..|+|+...|.+|+.+++|+.|+|++|+|+.+.|.+|.+++++.+|.+.+ |+|+......|..+..     +
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s-----l  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS-----L  142 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH-----H
Confidence            456677777777766667777788888888888888777778888777776666665 6777666666655543     6


Q ss_pred             cEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCC
Q 045210          400 ESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASG  479 (873)
Q Consensus       400 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  479 (873)
                      +.|.+.-|++.....+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|++....      +++.+..... .
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC------nL~wla~~~a-~  215 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC------NLPWLADDLA-M  215 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc------ccchhhhHHh-h
Confidence            66777777777766677777777777777777777333336777777777777777654221      1111110000 0


Q ss_pred             CeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccc
Q 045210          480 NSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQ  559 (873)
Q Consensus       480 n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~  559 (873)
                                                     .|..++...-..-..+.+.++..+-+..+...                 
T Consensus       216 -------------------------------~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-----------------  247 (498)
T KOG4237|consen  216 -------------------------------NPIETSGARCVSPYRLYYKRINQEDARKFLCS-----------------  247 (498)
T ss_pred             -------------------------------chhhcccceecchHHHHHHHhcccchhhhhhh-----------------
Confidence                                           00000000000000111111110001100000                 


Q ss_pred             cCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhcc
Q 045210          560 IPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW  639 (873)
Q Consensus       560 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l  639 (873)
                               ++.                  +..--.+.+...+..|..   .|..+++|+.|++++|++++.-+.+|.+.
T Consensus       248 ---------~es------------------l~s~~~~~d~~d~~cP~~---cf~~L~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  248 ---------LES------------------LPSRLSSEDFPDSICPAK---CFKKLPNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             ---------HHh------------------HHHhhccccCcCCcChHH---HHhhcccceEeccCCCccchhhhhhhcch
Confidence                     000                  000001112222222322   25568888888888888888888888888


Q ss_pred             ccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc-CChhHHhhcccCcEE
Q 045210          640 SFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN-IPTWIGERLSGIILL  718 (873)
Q Consensus       640 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-ip~~~~~~l~~L~~L  718 (873)
                      ..+++|.|..|++...-...|.++..|+.|+|.+|+++...|..|..+.+|.+|++-.|.+... --.|+++-+      
T Consensus       298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl------  371 (498)
T KOG4237|consen  298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL------  371 (498)
T ss_pred             hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH------
Confidence            8888888888888765556778888888888888888888888888888888888888776532 123443322      


Q ss_pred             EccCCeeeeeCCcccCCCCCCCEEeCCCCccc---cccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCcc
Q 045210          719 SLRANQFHGFFPPELCGLASLKILDLSSNNLT---GVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYY  795 (873)
Q Consensus       719 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (873)
                        +...-.|..| . +.-..++.++++++.+.   ..-|++.+...+=. ...+ ..-....+.........+|..+|..
T Consensus       372 --r~~~~~~~~~-C-q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~-cP~~-c~c~~tVvRcSnk~lk~lp~~iP~d  445 (498)
T KOG4237|consen  372 --RKKSVVGNPR-C-QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSP-CPPP-CTCLDTVVRCSNKLLKLLPRGIPVD  445 (498)
T ss_pred             --hhCCCCCCCC-C-CCCchhccccchhccccccccCCccccCCCCCCC-CCCC-cchhhhhHhhcccchhhcCCCCCch
Confidence              1222122211 1 12234455555555432   22333322111100 0000 0000111122233445567777778


Q ss_pred             ceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCC
Q 045210          796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSN  852 (873)
Q Consensus       796 L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  852 (873)
                      -++|++.+|.++ .+|.+  .+.+| .+|+|+|+++-.--..|.+|++|.+|.+|||
T Consensus       446 ~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  446 VTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            899999999999 79987  77788 9999999999776778899999999999997

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.2e-20  Score=215.01  Aligned_cols=264  Identities=27%  Similarity=0.343  Sum_probs=201.8

Q ss_pred             EEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCC
Q 045210          499 AIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNS  578 (873)
Q Consensus       499 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~  578 (873)
                      .|+++.+.+. .+|..+.  ++|+.|++.+|+++ .+|.    ..++|++|++++|+++.. |.  ..++|+.|++++|.
T Consensus       205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~--lp~sL~~L~Ls~N~  273 (788)
T PRK15387        205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV--LPPGLLELSIFSNP  273 (788)
T ss_pred             EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC--cccccceeeccCCc
Confidence            4455555444 3555443  36888888888887 3554    257899999999988854 43  24688999999998


Q ss_pred             CCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcc
Q 045210          579 LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT  658 (873)
Q Consensus       579 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  658 (873)
                      +. .+|..+.+|+.|++++|+++. +|..       .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|.
T Consensus       274 L~-~Lp~lp~~L~~L~Ls~N~Lt~-LP~~-------p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~  339 (788)
T PRK15387        274 LT-HLPALPSGLCKLWIFGNQLTS-LPVL-------PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT  339 (788)
T ss_pred             hh-hhhhchhhcCEEECcCCcccc-cccc-------ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence            87 455677889999999998875 3432       4679999999999985 4442   2468889999999984 664


Q ss_pred             cccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCC
Q 045210          659 SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLAS  738 (873)
Q Consensus       659 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  738 (873)
                      .   ..+|+.|++++|++++ +|..   ..+|+.|++++|++. .+|..    .++|+.|++++|++++ +|..   .++
T Consensus       340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l---~s~  403 (788)
T PRK15387        340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL---PSE  403 (788)
T ss_pred             c---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc---ccC
Confidence            2   2579999999999984 5643   357888999999998 58853    5679999999999985 5543   368


Q ss_pred             CCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCC
Q 045210          739 LKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLV  818 (873)
Q Consensus       739 L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~  818 (873)
                      |+.|++++|+++ .+|...                                    ..|+.|++++|+++ .+|..+++++
T Consensus       404 L~~LdLS~N~Ls-sIP~l~------------------------------------~~L~~L~Ls~NqLt-~LP~sl~~L~  445 (788)
T PRK15387        404 LKELMVSGNRLT-SLPMLP------------------------------------SGLLSLSVYRNQLT-RLPESLIHLS  445 (788)
T ss_pred             CCEEEccCCcCC-CCCcch------------------------------------hhhhhhhhccCccc-ccChHHhhcc
Confidence            999999999998 467532                                    12467999999998 7999999999


Q ss_pred             CCCeeeCCCCcCcccCCccccCC
Q 045210          819 GLQTLKLSHNFFSGRIPVNMGAM  841 (873)
Q Consensus       819 ~L~~L~Ls~N~l~~~ip~~l~~l  841 (873)
                      .|+.|+|++|+++|.+|..+..+
T Consensus       446 ~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        446 SETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             CCCeEECCCCCCCchHHHHHHHH
Confidence            99999999999999988877443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2.3e-19  Score=206.30  Aligned_cols=247  Identities=26%  Similarity=0.380  Sum_probs=166.4

Q ss_pred             CcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCc
Q 045210          519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN  598 (873)
Q Consensus       519 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  598 (873)
                      .+...|+++++.++ .+|..+.   +.++.|++++|+++.....+.  ++|+.|++++|.+++.....+.+|+.|++++|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCC
Confidence            35678888888877 4665442   478888888888885433332  47888888888877543334667888888888


Q ss_pred             cCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccc
Q 045210          599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG  678 (873)
Q Consensus       599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  678 (873)
                      .+. .+|..+      ..+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++.
T Consensus       252 ~L~-~LP~~l------~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        252 RIT-ELPERL------PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             ccC-cCChhH------hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence            876 445443      246788888888877 4565443  478888888888773 555443  467778888887773


Q ss_pred             cCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhh
Q 045210          679 KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN  758 (873)
Q Consensus       679 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  758 (873)
                       +|..+  .++|+.|++++|.++ .+|..+   .++|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~  387 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP  387 (754)
T ss_pred             -CCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH
Confidence             45433  257778888888777 477654   467788888888776 4555443  57788888888777 5565432


Q ss_pred             hhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhh----cCCCCCeeeCCCCcCc
Q 045210          759 NLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVT----NLVGLQTLKLSHNFFS  831 (873)
Q Consensus       759 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~----~l~~L~~L~Ls~N~l~  831 (873)
                                                         ..|+.||+++|+++ .+|..+.    .++.+..|++.+|+++
T Consensus       388 -----------------------------------~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 -----------------------------------AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -----------------------------------HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence                                               12366778888777 5565443    3466777888888776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=2.5e-19  Score=206.05  Aligned_cols=231  Identities=26%  Similarity=0.405  Sum_probs=134.3

Q ss_pred             ccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCC
Q 045210          497 LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSS  576 (873)
Q Consensus       497 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  576 (873)
                      ...|.++++.+. .+|..+.  ++++.|++++|++. .+|..++   ++|++|++++|+++.....+  .+.|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATL--PDTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhh--hccccEEECcC
Confidence            455666665544 2444332  35677777777666 4555443   36777777777666432222  23567777777


Q ss_pred             CCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCC
Q 045210          577 NSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNL  656 (873)
Q Consensus       577 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  656 (873)
                      |.+.......+.+|+.|++++|+++. +|..+      .++|+.|++++|++++ +|..+.  ++|+.|++++|+++. +
T Consensus       251 N~L~~LP~~l~s~L~~L~Ls~N~L~~-LP~~l------~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        251 NRITELPERLPSALQSLDLFHNKISC-LPENL------PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CccCcCChhHhCCCCEEECcCCccCc-ccccc------CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence            77663322335567777777776663 44322      2356777777777663 443332  356667777777663 4


Q ss_pred             cccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCC
Q 045210          657 PTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGL  736 (873)
Q Consensus       657 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  736 (873)
                      |..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|+++ .+|+.+.  
T Consensus       320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--  387 (754)
T PRK15370        320 PETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--  387 (754)
T ss_pred             Ccccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--
Confidence            44332  567777777777663 554442  56777777777766 566544   356777777777766 3454443  


Q ss_pred             CCCCEEeCCCCccccccChhhhhh
Q 045210          737 ASLKILDLSSNNLTGVIPRCINNL  760 (873)
Q Consensus       737 ~~L~~L~Ls~N~l~~~ip~~l~~l  760 (873)
                      .+|+.|++++|+++ .+|..+.++
T Consensus       388 ~sL~~LdLs~N~L~-~LP~sl~~~  410 (754)
T PRK15370        388 AALQIMQASRNNLV-RLPESLPHF  410 (754)
T ss_pred             HHHHHHhhccCCcc-cCchhHHHH
Confidence            35667777777776 556555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=6e-18  Score=181.98  Aligned_cols=287  Identities=20%  Similarity=0.188  Sum_probs=130.5

Q ss_pred             eecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCC----CcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210          125 HLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGI----IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK  200 (873)
Q Consensus       125 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~  200 (873)
                      .|+|..+.+++...+..+..+.+|++|+++++.++..    ++..+...++|++++++++.+...+..            
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~------------   69 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG------------   69 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchH------------
Confidence            4667777776555566666666777777777766432    333344445555555555433210000            


Q ss_pred             EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210          201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS  280 (873)
Q Consensus       201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  280 (873)
                                 ....+..+..+++|+.|++++|.+....+..+..+.+                     . ++|++|+++
T Consensus        70 -----------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---------------------~-~~L~~L~ls  116 (319)
T cd00116          70 -----------LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR---------------------S-SSLQELKLN  116 (319)
T ss_pred             -----------HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc---------------------c-CcccEEEee
Confidence                       0000112233445555555555444333333322222                     1 224444444


Q ss_pred             CCcCCC----CChhhhcCC-CCCCEEECCCCCCCCC----CchhhhcCCCcCEEEccCCcCCcc----CcccccCCCCCC
Q 045210          281 TNNFQG----AVPDAIQNS-TSLQHLDLSRNHFSSS----VPDWFNKFIDLEYLSLSYNELQGS----IPGSLGNLTSIK  347 (873)
Q Consensus       281 ~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~  347 (873)
                      +|++++    .+...+..+ ++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+
T Consensus       117 ~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~  196 (319)
T cd00116         117 NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE  196 (319)
T ss_pred             CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCC
Confidence            444432    122233333 4555555555555422    222334445555555555555421    222333445566


Q ss_pred             EEeCCCCcCCCc----chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC----ccccccCC
Q 045210          348 SLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG----LLTNQIGN  419 (873)
Q Consensus       348 ~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~  419 (873)
                      +|++++|.+++.    +...+..+++|++|++++|.+++.....+..........|++|++++|.++.    .+...+..
T Consensus       197 ~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~  276 (319)
T cd00116         197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE  276 (319)
T ss_pred             EEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc
Confidence            666666555432    2233444556666666666655432222111100001125666666655542    12233344


Q ss_pred             CCCCCEEeCCCCccCcc----ccccccCC-CCCCEEEccCcc
Q 045210          420 FKNLDSLDLSFNNISGH----IPLSLGQL-SSLRYLDVSTNN  456 (873)
Q Consensus       420 l~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~  456 (873)
                      +++|+++++++|.++..    ....+... +.|+++++.+|+
T Consensus       277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            45666666666666533    22222233 455555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=4.4e-18  Score=183.03  Aligned_cols=257  Identities=21%  Similarity=0.230  Sum_probs=139.8

Q ss_pred             cee-eecccCccCCCCCCeecCCCCCCCCC---CCCccccCCCCCCEEeccCCcCCC------CCcccccCCCCCcEEEC
Q 045210          108 KIV-GKINPSLLGLKHLIHLDLSYNDFQGI---QIPRFLGSLENLMYLNISRAGFVG------IIPHQIGNLSNLQFLDL  177 (873)
Q Consensus       108 ~~~-g~~~~~l~~l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L  177 (873)
                      .+. +.....+..+++|++|+++++.++..   .++..+...+.|++|+++++.+.+      .++..+..+++|++|++
T Consensus         9 ~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l   88 (319)
T cd00116           9 LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL   88 (319)
T ss_pred             cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence            444 34445567788899999999998543   256677788899999999988762      23455677888888888


Q ss_pred             CCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCC-CCccEEEcCC
Q 045210          178 RPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANF-SSLVTLDISD  256 (873)
Q Consensus       178 ~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~  256 (873)
                      ++|.+.......+..+...++|++|++++|.+++...                      ......+..+ ++|+.|++++
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~----------------------~~l~~~l~~~~~~L~~L~L~~  146 (319)
T cd00116          89 SDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL----------------------RLLAKGLKDLPPALEKLVLGR  146 (319)
T ss_pred             cCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH----------------------HHHHHHHHhCCCCceEEEcCC
Confidence            8887764333222111111335555555444432100                      0111223333 5555556655


Q ss_pred             CCCCCC---chhHhhcCCCCCcEEEccCCcCCCC----ChhhhcCCCCCCEEECCCCCCCCCC----chhhhcCCCcCEE
Q 045210          257 NQFADS---SIVNQVLGLVNLVFLDLSTNNFQGA----VPDAIQNSTSLQHLDLSRNHFSSSV----PDWFNKFIDLEYL  325 (873)
Q Consensus       257 n~l~~~---~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L  325 (873)
                      |.++..   .+...+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..    +..+..+++|++|
T Consensus       147 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L  226 (319)
T cd00116         147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL  226 (319)
T ss_pred             CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence            555421   1223344555666666666665532    2233444456666666666554322    2233445566666


Q ss_pred             EccCCcCCccCccccc-----CCCCCCEEeCCCCcCCC----cchhhhhcCCCCCEEEccCCcCcchhhH
Q 045210          326 SLSYNELQGSIPGSLG-----NLTSIKSLDLSFNRLES----KIPRAFKRLRHLRSVNLSGNKLSQEISQ  386 (873)
Q Consensus       326 ~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~  386 (873)
                      ++++|.+++.....+.     ..+.|++|++++|.++.    .+...+..+++|+.+++++|.+......
T Consensus       227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~  296 (319)
T cd00116         227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ  296 (319)
T ss_pred             ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence            6666655532222221     12566666666666542    1233444455666666666666554333

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.8e-18  Score=152.61  Aligned_cols=183  Identities=22%  Similarity=0.458  Sum_probs=116.8

Q ss_pred             hhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccC
Q 045210          636 WMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI  715 (873)
Q Consensus       636 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L  715 (873)
                      +..++..+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|++. .+|..++. ++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-FPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-Cchh
Confidence            345566667777777777 55666777777777777777776 66777777777777777777766 56666664 6666


Q ss_pred             cEEEccCCeeee-eCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCc
Q 045210          716 ILLSLRANQFHG-FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPY  794 (873)
Q Consensus       716 ~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (873)
                      +.||+..|++.. .+|..|..++.|+.|+|++|.|. .+|..+++++.|                               
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l-------------------------------  152 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL-------------------------------  152 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce-------------------------------
Confidence            667666666543 45666666666666666666665 666666666554                               


Q ss_pred             cceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCC---CeEeccCCcccccc
Q 045210          795 YLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSV---EALDFSSNRLQGEI  858 (873)
Q Consensus       795 ~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L---~~L~ls~N~l~g~i  858 (873)
                        +.|.+..|.+. ++|.+++.++.|+.|.+.+|+++ .+|..++++.-+   +.+.+.+|++...|
T Consensus       153 --qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  153 --QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             --eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence              56666666665 56666666666666666666666 555555554211   23334445544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=3.5e-18  Score=150.86  Aligned_cols=185  Identities=26%  Similarity=0.454  Sum_probs=158.3

Q ss_pred             ccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcE
Q 045210          613 NNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL  692 (873)
Q Consensus       613 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  692 (873)
                      .++...+.|.+|+|+++ .+|..+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|++
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            34567788899999998 67778899999999999999998 68888999999999999999987 88999999999999


Q ss_pred             EEccCCeecc-cCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchh
Q 045210          693 FDISENEFVG-NIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVD  771 (873)
Q Consensus       693 L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~  771 (873)
                      ||+.+|.+.. .+|..++. ++.|+.|++++|.|. .+|+.++++++|+.|.+..|.+. ++|++++.++.|        
T Consensus       107 ldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l--------  175 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL--------  175 (264)
T ss_pred             hhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH--------
Confidence            9999998874 47888885 999999999999998 78889999999999999999998 889999988876        


Q ss_pred             hhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCC---CeeeCCCCcCcccCCcc
Q 045210          772 KFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGL---QTLKLSHNFFSGRIPVN  837 (873)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L---~~L~Ls~N~l~~~ip~~  837 (873)
                                               ++|.+.+|+++ .+|++++++.-+   +++.+.+|.....|.+.
T Consensus       176 -------------------------relhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ  218 (264)
T KOG0617|consen  176 -------------------------RELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQ  218 (264)
T ss_pred             -------------------------HHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence                                     78999999998 789899887433   45677788776555544

>PLN03150 hypothetical protein; Provisional

Probab=99.45  E-value=3.5e-13  Score=155.40  Aligned_cols=131  Identities=34%  Similarity=0.530  Sum_probs=112.9

Q ss_pred             ccCCHHHHHHHHHhhhcCCCCCCCcCCCccCCCCCCc----cceeeEecC--CC--CcEEEEecCCCCCCCCCchhhhhc
Q 045210           33 AGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCC----KWYGVVCDN--IT--GHVLELRLRNPSRDDGSPAEYEAY  104 (873)
Q Consensus        33 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~c----~w~gv~c~~--~~--~~v~~l~l~~~~~~~~~~~~~~~~  104 (873)
                      ..+.++|.+||+++|+++.+|..  .+|.   +..||    .|.||.|..  ..  .+|+.|+|++.             
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~---g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-------------  428 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWN---GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-------------  428 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCC---CCCCCCcccccccceeeccCCCCceEEEEEECCCC-------------
Confidence            35677899999999999876542  4897   44443    799999952  22  25999999985             


Q ss_pred             cccceeeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCC
Q 045210          105 ERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG  184 (873)
Q Consensus       105 ~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  184 (873)
                         .+.|.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|++++|.++.
T Consensus       429 ---~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        429 ---GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG  504 (623)
T ss_pred             ---CccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence               78999999999999999999999999987 99999999999999999999999999999999999999999998874


Q ss_pred             C
Q 045210          185 L  185 (873)
Q Consensus       185 l  185 (873)
                      .
T Consensus       505 ~  505 (623)
T PLN03150        505 R  505 (623)
T ss_pred             c
Confidence            3

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=2.2e-14  Score=150.30  Aligned_cols=192  Identities=27%  Similarity=0.389  Sum_probs=139.6

Q ss_pred             CceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210          618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE  697 (873)
Q Consensus       618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  697 (873)
                      -...|++.|++. ++|..+..+..|+.+.++.|.+- .+|..+.++..|+++||+.|+++ .+|..+..|+ |+.|-+++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            456677888877 77777777788888888888776 67777888888888888888877 6677666664 77788888


Q ss_pred             CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhh
Q 045210          698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDA  777 (873)
Q Consensus       698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~  777 (873)
                      |+++ .+|..++ ....|..|+.+.|.+. .+|..++++.+|+.|++..|++. .+|+++..|+                
T Consensus       153 Nkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp----------------  212 (722)
T KOG0532|consen  153 NKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP----------------  212 (722)
T ss_pred             Cccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc----------------
Confidence            8877 7777777 4777777777777776 56667777777777777777776 5666655332                


Q ss_pred             eeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCcccc---CCCCCCeEeccCCc
Q 045210          778 LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMG---AMKSVEALDFSSNR  853 (873)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~ls~N~  853 (873)
                                        |..||+|+|+++ .||-.|.+|+.|++|-|.+|.+. +-|..+.   ...-.++|+..-++
T Consensus       213 ------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  213 ------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence                              367888888887 68888888888888888888887 4555543   33345566666664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.32  E-value=5e-14  Score=147.71  Aligned_cols=193  Identities=29%  Similarity=0.454  Sum_probs=154.0

Q ss_pred             CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210          589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI  668 (873)
Q Consensus       589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  668 (873)
                      --...|++.|++. .+|..++.    +..|+.+.+..|.+- .+|.++.++..|++++|+.|+++ .+|..+..|+ |+.
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~----f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACA----FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             chhhhhccccccc-cCchHHHH----HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            4456788888876 45655554    677888888888887 78888899999999999999988 6777777665 888


Q ss_pred             EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210          669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN  748 (873)
Q Consensus       669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  748 (873)
                      |-+++|+++ .+|+.++....|..||.+.|.+. .+|..++. +.+|+.|.++.|++. .+|++++.| .|..||+|+|+
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk  222 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK  222 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence            899999887 78888888888899999999888 78888885 889999999999887 566777755 58889999999


Q ss_pred             cccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhh---hcCCCCCeeeC
Q 045210          749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV---TNLVGLQTLKL  825 (873)
Q Consensus       749 l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l---~~l~~L~~L~L  825 (873)
                      ++ .||-+|.+++.|                                 ++|-|.+|.+. .-|.++   |...-.++|+.
T Consensus       223 is-~iPv~fr~m~~L---------------------------------q~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~  267 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHL---------------------------------QVLQLENNPLQ-SPPAQICEKGKVHIFKYLST  267 (722)
T ss_pred             ee-ecchhhhhhhhh---------------------------------eeeeeccCCCC-CChHHHHhccceeeeeeecc
Confidence            88 888888888876                                 78888899887 566666   44445567777


Q ss_pred             CCCc
Q 045210          826 SHNF  829 (873)
Q Consensus       826 s~N~  829 (873)
                      .-++
T Consensus       268 qA~q  271 (722)
T KOG0532|consen  268 QACQ  271 (722)
T ss_pred             hhcc
Confidence            7774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.24  E-value=9.9e-12  Score=137.53  Aligned_cols=180  Identities=33%  Similarity=0.549  Sum_probs=99.0

Q ss_pred             cccCcEEEcCCCcCccCCcccccCCC-CccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcE
Q 045210          639 WSFLFFLHLGENDFTGNLPTSLGTLS-SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL  717 (873)
Q Consensus       639 l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  717 (873)
                      .+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|..... .+.|+.
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~  190 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNN  190 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh-hhhhhh
Confidence            345555555555555 3444444442 5666666666555 34444555666666666666665 45554432 566666


Q ss_pred             EEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccce
Q 045210          718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLK  797 (873)
Q Consensus       718 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  797 (873)
                      |++++|++. .+|..+.....|+.+++++|+.. .++..+.++..+                                 .
T Consensus       191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l---------------------------------~  235 (394)
T COG4886         191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL---------------------------------S  235 (394)
T ss_pred             eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------------------------c
Confidence            666666665 44444444455666666666433 334444444433                                 3


Q ss_pred             EEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccccccc
Q 045210          798 VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPK  860 (873)
Q Consensus       798 ~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  860 (873)
                      .+.+++|++. .+|..++.+++++.|++++|.++ .++. ++.+.+++.||+++|.++...|.
T Consensus       236 ~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         236 GLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence            4445566555 33555666666666666666666 3333 56666666666666666655443

>PLN03150 hypothetical protein; Provisional

Probab=99.21  E-value=1.8e-11  Score=141.37  Aligned_cols=112  Identities=34%  Similarity=0.594  Sum_probs=68.8

Q ss_pred             CcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCc
Q 045210          715 IILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPY  794 (873)
Q Consensus       715 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (873)
                      ++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.++.|                               
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L-------------------------------  468 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL-------------------------------  468 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-------------------------------
Confidence            4455555566656666666666666666666666666666666555544                               


Q ss_pred             cceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCC-CCCCeEeccCCccccccc
Q 045210          795 YLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM-KSVEALDFSSNRLQGEIP  859 (873)
Q Consensus       795 ~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~iP  859 (873)
                        +.|||++|+++|.+|+.++++++|++|+|++|.++|.+|..++.+ .++..+++++|+..+.+|
T Consensus       469 --~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        469 --EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             --CEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence              566666666666666666666666666666666666666666543 345566666666554444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.19  E-value=2.1e-12  Score=128.34  Aligned_cols=254  Identities=24%  Similarity=0.288  Sum_probs=151.2

Q ss_pred             cCccCCCCCCeecCCCCCCCCC---CCCccccCCCCCCEEeccCCc---CCCCCccc-------ccCCCCCcEEECCCCC
Q 045210          115 PSLLGLKHLIHLDLSYNDFQGI---QIPRFLGSLENLMYLNISRAG---FVGIIPHQ-------IGNLSNLQFLDLRPNY  181 (873)
Q Consensus       115 ~~l~~l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~L~~n~---l~~~~p~~-------l~~l~~L~~L~L~~n~  181 (873)
                      +.+.....+++++||+|.+...   .+...+.+.++|+.-++++.-   ....+|..       +..+++|+++|||.|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            3455667777788887776532   133445666777777777642   22234433       3455677777777777


Q ss_pred             CCCCccCccc-cccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCC
Q 045210          182 LGGLYVEDFG-WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFA  260 (873)
Q Consensus       182 l~~l~~~~~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  260 (873)
                      +..-....+. .++++..|++|.|.+|.+........  +  ..|.+|.         .......-+.||++...+|++.
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l--~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL--G--RALFELA---------VNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH--H--HHHHHHH---------HHhccCCCcceEEEEeeccccc
Confidence            6544444332 24556666666666665544321110  0  0000000         0011233456777777777765


Q ss_pred             CCc---hhHhhcCCCCCcEEEccCCcCCC----CChhhhcCCCCCCEEECCCCCCCCC----CchhhhcCCCcCEEEccC
Q 045210          261 DSS---IVNQVLGLVNLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDLSRNHFSSS----VPDWFNKFIDLEYLSLSY  329 (873)
Q Consensus       261 ~~~---~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~  329 (873)
                      ++.   +...+...+.|+.+.++.|.+..    .+...+..|++|++||+..|.++..    +...+..+++|+.+++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            443   23355566777777777777652    2345677788888888888877633    234455677888888888


Q ss_pred             CcCCccCcccc-----cCCCCCCEEeCCCCcCCCc----chhhhhcCCCCCEEEccCCcCc
Q 045210          330 NELQGSIPGSL-----GNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLS  381 (873)
Q Consensus       330 n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  381 (873)
                      |.+...-..++     ...++|+.+.+.+|.++..    +...+...+.|+.|++++|.+.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            88765433333     2467888888888887643    2234456788888999998884

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=1.4e-11  Score=122.62  Aligned_cols=115  Identities=22%  Similarity=0.299  Sum_probs=55.3

Q ss_pred             cCCCCCCEEeCCCCcCCCc----chhhhhcCCCCCEEEccCCcCcchhhHHHH-HhhhcccccccEEEccCcccCCcccc
Q 045210          341 GNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQEISQVLD-MFSACASNVLESLDLSNNTLFGLLTN  415 (873)
Q Consensus       341 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~  415 (873)
                      ...+.|+.+.++.|.|...    +...+..+++|+.|+|.+|-++........ .++.++  .|++|++++|.+...-..
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~--~L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP--HLRELNLGDCLLENEGAI  259 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc--hheeecccccccccccHH
Confidence            3344445555544444211    223444555555555555555444333322 111111  255555555555432222


Q ss_pred             cc-----CCCCCCCEEeCCCCccCcc----ccccccCCCCCCEEEccCccC
Q 045210          416 QI-----GNFKNLDSLDLSFNNISGH----IPLSLGQLSSLRYLDVSTNNL  457 (873)
Q Consensus       416 ~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l  457 (873)
                      .+     ...|+|+.+.+.+|.++..    +...+...+.|..|+|++|++
T Consensus       260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            11     2356677777777766522    222344566777777777776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=7.2e-12  Score=127.91  Aligned_cols=212  Identities=21%  Similarity=0.200  Sum_probs=137.3

Q ss_pred             CCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCcccc-CCC
Q 045210          168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSF-ANF  246 (873)
Q Consensus       168 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l  246 (873)
                      ++.+|+...|.++.+...+..  +....|++++.|||++|-+............+|+|+.|.++.|++........ ..+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            445555555555554443332  23455666666666666665554445556677777777777777654433222 356


Q ss_pred             CCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCc--hhhhcCCCcCE
Q 045210          247 SSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP--DWFNKFIDLEY  324 (873)
Q Consensus       247 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~  324 (873)
                      +.|+.|.++.|.++...+...+..+++|+.|+|..|...........-++.|++|+|++|.+.. .+  ...+.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence            7888999999998866666677888999999999886333333444556788999999988763 33  44678888888


Q ss_pred             EEccCCcCCcc-Cccc-----ccCCCCCCEEeCCCCcCCCc-chhhhhcCCCCCEEEccCCcCcc
Q 045210          325 LSLSYNELQGS-IPGS-----LGNLTSIKSLDLSFNRLESK-IPRAFKRLRHLRSVNLSGNKLSQ  382 (873)
Q Consensus       325 L~L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~  382 (873)
                      |+++.+.+... .|+.     ...+++|++|++..|++... .-..+..+++|+.|.+..|.+..
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            98888887642 2322     24567888888888887532 11234455666666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=7.7e-11  Score=130.43  Aligned_cols=179  Identities=35%  Similarity=0.467  Sum_probs=108.0

Q ss_pred             CCCCceEeccCCcccCCCChhhhccc-cCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEE
Q 045210          615 SMRLQVLNLGNNTLSGEIPDCWMNWS-FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF  693 (873)
Q Consensus       615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  693 (873)
                      .+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..++.+++|+.|++++|+++ .+|...+..+.|+.|
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            345666666666666 4444445553 6667777777666 44455666677777777777766 444444466667777


Q ss_pred             EccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhh
Q 045210          694 DISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKF  773 (873)
Q Consensus       694 ~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~  773 (873)
                      ++++|++. .+|..+.. ...|+++.+++|+.. .++..+..+..+..+.+.+|++.. +|..++.+..           
T Consensus       192 ~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~-----------  256 (394)
T COG4886         192 DLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSN-----------  256 (394)
T ss_pred             eccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccc-----------
Confidence            77777766 66665432 455777777777533 344456666666666666666652 2333333333           


Q ss_pred             chhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCC
Q 045210          774 FEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP  835 (873)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  835 (873)
                                            ++.|++++|.++ .++. ++.+.+++.|++++|.++...|
T Consensus       257 ----------------------l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         257 ----------------------LETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ----------------------cceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence                                  366777777776 4444 6677777777777776664444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.4e-11  Score=125.81  Aligned_cols=165  Identities=28%  Similarity=0.280  Sum_probs=86.1

Q ss_pred             cCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCc--ccccCCCCCcEEECCCCCCCCCccCccccccC
Q 045210          118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIP--HQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSH  195 (873)
Q Consensus       118 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  195 (873)
                      .+++.||...|.++.+....+-.....|++++.|||+.|-+...-|  .-...+++|+.|+++.|++..-.....  -..
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~--~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT--TLL  195 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc--hhh
Confidence            4566777777777666543222355667777777777765543221  223456777777777776543322211  124


Q ss_pred             CCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCc
Q 045210          196 LSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLV  275 (873)
Q Consensus       196 l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  275 (873)
                      ++.|+.|.++.|.++. .+.......+|+|+.|++..|....+......-++.|+.|||++|++-+.......+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            4556666666666652 222233445566666666665433333333444455555555555554333333444455555


Q ss_pred             EEEccCCcCC
Q 045210          276 FLDLSTNNFQ  285 (873)
Q Consensus       276 ~L~L~~n~l~  285 (873)
                      .|+++.+.+.
T Consensus       275 ~Lnls~tgi~  284 (505)
T KOG3207|consen  275 QLNLSSTGIA  284 (505)
T ss_pred             hhhccccCcc
Confidence            5555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=3.1e-10  Score=106.63  Aligned_cols=36  Identities=19%  Similarity=0.115  Sum_probs=11.6

Q ss_pred             hcCCCCCCEEECCCCCCCCCC---chhhhcCCCcCEEEc
Q 045210          292 IQNSTSLQHLDLSRNHFSSSV---PDWFNKFIDLEYLSL  327 (873)
Q Consensus       292 l~~l~~L~~L~l~~n~l~~~~---p~~l~~l~~L~~L~L  327 (873)
                      +..+++|++|++.+|.++...   ...+..+|+|+.||-
T Consensus       109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            334444444444444443210   112344555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=3.9e-10  Score=105.88  Aligned_cols=110  Identities=25%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             ccCCCCCCeecCCCCCCCCCCCCcccc-CCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccc-c
Q 045210          117 LLGLKHLIHLDLSYNDFQGIQIPRFLG-SLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWV-S  194 (873)
Q Consensus       117 l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l-~  194 (873)
                      +.+..++++|+|.+|.++.+   +.++ .+.+|+.|++++|.++..  +.+..+++|++|++++|+|+.+...    + .
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~----l~~   85 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEG----LDK   85 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHH----HHH
T ss_pred             cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccc----hHH
Confidence            34555678888888888753   2354 567888888888887653  2466777888888888877766432    2 3


Q ss_pred             CCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCC
Q 045210          195 HLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH  236 (873)
Q Consensus       195 ~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  236 (873)
                      .+++|++|++++|++....+. ..+..+++|++|++.+|++.
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGG
T ss_pred             hCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCccc
Confidence            466677777777766665442 23334445555555444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=5.7e-10  Score=108.28  Aligned_cols=136  Identities=29%  Similarity=0.355  Sum_probs=101.9

Q ss_pred             CCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCE
Q 045210          245 NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEY  324 (873)
Q Consensus       245 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  324 (873)
                      ..+.|+.+||++|.++  .+-+++.-.++++.|+++.|.+...  ..+..+++|++||+++|.++ .+..|-.++.+++.
T Consensus       282 TWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            3467888888888874  5666777778888888888888732  33778888888888888877 55666677888888


Q ss_pred             EEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcc-hhhhhcCCCCCEEEccCCcCcchhhHH
Q 045210          325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI-PRAFKRLRHLRSVNLSGNKLSQEISQV  387 (873)
Q Consensus       325 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~  387 (873)
                      |.|++|.+..  -..++.+-+|..||+++|+|.... -..++++|-|+++.+.+|.+.+.+...
T Consensus       357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR  418 (490)
T KOG1259|consen  357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR  418 (490)
T ss_pred             eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence            8888888762  235777888888888888886432 346788888888888888887765443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=4.5e-10  Score=108.99  Aligned_cols=134  Identities=27%  Similarity=0.293  Sum_probs=88.5

Q ss_pred             cccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcC
Q 045210          684 LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGM  763 (873)
Q Consensus       684 l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  763 (873)
                      +.....|+++|+|+|.++ .+.+.+-- .|.++.|+++.|.+...  +.+..+++|+.||||+|.++ .+-.+-.++   
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KL---  351 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKL---  351 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhh-ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhh---
Confidence            333456777777777776 56666543 67777788887777644  34677788888888888776 221111111   


Q ss_pred             chhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc-CCccccCCC
Q 045210          764 AKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR-IPVNMGAMK  842 (873)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~  842 (873)
                                                    ...+.|.|+.|.+..  -+.++.+-+|..||++.|++... --..+|+++
T Consensus       352 ------------------------------GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP  399 (490)
T KOG1259|consen  352 ------------------------------GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP  399 (490)
T ss_pred             ------------------------------cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhccccccc
Confidence                                          223677788877642  34477777788888888877632 234677888


Q ss_pred             CCCeEeccCCccccc
Q 045210          843 SVEALDFSSNRLQGE  857 (873)
Q Consensus       843 ~L~~L~ls~N~l~g~  857 (873)
                      .|+.+.+.+|++.+.
T Consensus       400 CLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  400 CLETLRLTGNPLAGS  414 (490)
T ss_pred             HHHHHhhcCCCcccc
Confidence            888888888888764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.84  E-value=1.8e-09  Score=127.24  Aligned_cols=107  Identities=29%  Similarity=0.328  Sum_probs=70.5

Q ss_pred             CCCCCeecCCCCC--CCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210          120 LKHLIHLDLSYND--FQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS  197 (873)
Q Consensus       120 l~~L~~L~Ls~n~--~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~  197 (873)
                      .+.|+.|-+.+|.  +... .+.+|..++.|++|||++|.-.+.+|..++.|-+||+|+++++.+..+|..    +.+++
T Consensus       544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~----l~~Lk  618 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG----LGNLK  618 (889)
T ss_pred             CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH----HHHHH
Confidence            3467777777775  3332 345677788888888888777777888888888888888888887777766    67777


Q ss_pred             CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCC
Q 045210          198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC  233 (873)
Q Consensus       198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n  233 (873)
                      +|.+|++..+......  +.....+++|++|.+...
T Consensus       619 ~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hhheeccccccccccc--cchhhhcccccEEEeecc
Confidence            7777777765433222  223333555555554433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.75  E-value=1.2e-08  Score=120.22  Aligned_cols=86  Identities=34%  Similarity=0.403  Sum_probs=43.1

Q ss_pred             hcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCC
Q 045210          268 VLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK  347 (873)
Q Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  347 (873)
                      +..++.|++|||++|.--+.+|+.++.+-+|++|+++++.+. .+|..+++++.|.+|++..+.....+|.....+++|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            344455555555544444445555555555555555555554 4555555555555555555443333344444455555


Q ss_pred             EEeCCCC
Q 045210          348 SLDLSFN  354 (873)
Q Consensus       348 ~L~L~~n  354 (873)
                      +|.+...
T Consensus       646 ~L~l~~s  652 (889)
T KOG4658|consen  646 VLRLPRS  652 (889)
T ss_pred             EEEeecc
Confidence            5555443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.74  E-value=9e-09  Score=72.17  Aligned_cols=41  Identities=51%  Similarity=1.006  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhhhcCC-CCCCCcCCCccCCCCCCccceeeEec
Q 045210           37 ESEREALLSFKQDLE-DPSNRLASWNNIGVGDCCKWYGVVCD   77 (873)
Q Consensus        37 ~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~~~~c~w~gv~c~   77 (873)
                      ++|++||++||+++. +|.+.+.+|+..+..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999997 57789999984312799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.65  E-value=2.5e-09  Score=118.35  Aligned_cols=129  Identities=33%  Similarity=0.343  Sum_probs=73.6

Q ss_pred             CCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCC
Q 045210          119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSL  198 (873)
Q Consensus       119 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~  198 (873)
                      .+..+..+++..|.+..  +-..++.+++|.+|++.+|.+..... .+..+++|++|++++|.|+.+..     +..++.
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~-----l~~l~~  141 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG-----LSTLTL  141 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc-----hhhccc
Confidence            45556666666666654  22345666777777777777654322 25667777777777777665543     455555


Q ss_pred             CcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCc-cccCCCCCccEEEcCCCCCC
Q 045210          199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP-LSFANFSSLVTLDISDNQFA  260 (873)
Q Consensus       199 L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  260 (873)
                      |+.|++++|.++.....    ..++.|+.+++++|++..+.+ . ...+.+++.+++.+|.+.
T Consensus       142 L~~L~l~~N~i~~~~~~----~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  142 LKELNLSGNLISDISGL----ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             hhhheeccCcchhccCC----ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            66666666666655432    225555555555555555444 2 344455555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=5.2e-10  Score=108.65  Aligned_cols=183  Identities=26%  Similarity=0.207  Sum_probs=108.5

Q ss_pred             CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCC-CCCCccCccccccCCCCC
Q 045210          121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY-LGGLYVEDFGWVSHLSLL  199 (873)
Q Consensus       121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~l~~L  199 (873)
                      +.|++||||...++...+-..+..|.+|+.|.|.++.+.+.+-..+++-.+|+.|+++.+. +++-....  .+.+++.|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l--l~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL--LLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH--HHHhhhhH
Confidence            3588999998888765556667888999999999999988888888888899999988764 22111110  13455555


Q ss_pred             cEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCC--CCCCchhHhhcCCCCCcEE
Q 045210          200 KHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ--FADSSIVNQVLGLVNLVFL  277 (873)
Q Consensus       200 ~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L  277 (873)
                      ..|+++.|.+...........--                        .+|+.|+++++.  +.+..+......+++|..|
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~his------------------------e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHIS------------------------ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhc------------------------hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            55555555444332111111111                        345555555542  2222333344566666666


Q ss_pred             EccCCc-CCCCChhhhcCCCCCCEEECCCCCCCCCCchh---hhcCCCcCEEEccCCc
Q 045210          278 DLSTNN-FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW---FNKFIDLEYLSLSYNE  331 (873)
Q Consensus       278 ~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~L~L~~n~  331 (873)
                      ||++|. ++......+.+++.|++|.++.|..  .+|..   +...|.|.+|+..++-
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            666553 3333444556666677777766652  34443   3456677777776653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=2.2e-08  Score=77.12  Aligned_cols=60  Identities=35%  Similarity=0.465  Sum_probs=55.1

Q ss_pred             cceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcc
Q 045210          795 YLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL  854 (873)
Q Consensus       795 ~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  854 (873)
                      .|+.|++++|+++..-+..+..+++|++|++++|.++...|..|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            468999999999966667889999999999999999988888999999999999999985

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=8.8e-09  Score=113.98  Aligned_cols=170  Identities=29%  Similarity=0.316  Sum_probs=78.6

Q ss_pred             CCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEecc
Q 045210          545 QINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLG  624 (873)
Q Consensus       545 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls  624 (873)
                      .++.+.+..|.+......+..+.+|+.+++.+|.+.+....                          +..+++|++|+++
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--------------------------l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--------------------------LSSLVNLQVLDLS  126 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--------------------------hhhhhcchheecc
Confidence            44444455555544333345555555555555555433220                          1224445555555


Q ss_pred             CCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCC-cccccCCCCcEEEccCCeeccc
Q 045210          625 NNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGN  703 (873)
Q Consensus       625 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~  703 (873)
                      +|.|+...  .+..++.|+.|++++|.+...  ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+. .
T Consensus       127 ~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~  200 (414)
T KOG0531|consen  127 FNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-E  200 (414)
T ss_pred             cccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-c
Confidence            55554322  233444455555555555521  234445555555666655553333 2 344555566666666554 1


Q ss_pred             CChhHHhhcccCcEEEccCCeeeeeCCcccCCCCC--CCEEeCCCCccc
Q 045210          704 IPTWIGERLSGIILLSLRANQFHGFFPPELCGLAS--LKILDLSSNNLT  750 (873)
Q Consensus       704 ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~  750 (873)
                      +. ++.. +..+..+++..|.++..-  .+..+..  |+.+++++|++.
T Consensus       201 i~-~~~~-~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  201 IE-GLDL-LKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             cc-chHH-HHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc
Confidence            21 1111 333344455555554331  1222222  555666666555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.56  E-value=5.2e-08  Score=75.02  Aligned_cols=58  Identities=33%  Similarity=0.473  Sum_probs=25.8

Q ss_pred             CcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCe
Q 045210          642 LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENE  699 (873)
Q Consensus       642 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  699 (873)
                      |++|++++|++....+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444444444443333344444444444444444444444444444444444444443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.42  E-value=5.4e-08  Score=93.66  Aligned_cols=95  Identities=26%  Similarity=0.320  Sum_probs=57.2

Q ss_pred             ccCCCCCCeecCCCCCCCCC---CCCccccCCCCCCEEeccCCcCCCC----Cc-------ccccCCCCCcEEECCCCCC
Q 045210          117 LLGLKHLIHLDLSYNDFQGI---QIPRFLGSLENLMYLNISRAGFVGI----IP-------HQIGNLSNLQFLDLRPNYL  182 (873)
Q Consensus       117 l~~l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~L~~n~l~~~----~p-------~~l~~l~~L~~L~L~~n~l  182 (873)
                      +..+..+..+|||+|.|...   .+...+.+-.+|+..++++-. +|.    +|       .++-+|++|+..+||.|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            33466677777777776543   123334555667777776532 222    22       3445778888888888877


Q ss_pred             CCCccCcc-ccccCCCCCcEEeCCCCCCCCC
Q 045210          183 GGLYVEDF-GWVSHLSLLKHLDLSGVDLSKT  212 (873)
Q Consensus       183 ~~l~~~~~-~~l~~l~~L~~L~L~~~~l~~~  212 (873)
                      ..-.+..+ ..+++-..|+||.+++|.+...
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence            64333332 3466777777777777776554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2.9e-08  Score=96.72  Aligned_cols=179  Identities=24%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             CCCEEECCCCCCCCC-CchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCc-CCCc-chhhhhcCCCCCEE
Q 045210          297 SLQHLDLSRNHFSSS-VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR-LESK-IPRAFKRLRHLRSV  373 (873)
Q Consensus       297 ~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L  373 (873)
                      .|+++|++...++.. +-.-+..|.+|+.|.+.++++.+.+...++.-.+|+.++++.+. ++.. ..-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666555421 22334566677777777777766666666677777777777653 3321 12245677777788


Q ss_pred             EccCCcCcchhhHHHHHhhhcccccccEEEccCcccC---CccccccCCCCCCCEEeCCCCc-cCccccccccCCCCCCE
Q 045210          374 NLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLF---GLLTNQIGNFKNLDSLDLSFNN-ISGHIPLSLGQLSSLRY  449 (873)
Q Consensus       374 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~  449 (873)
                      ++++|.+......+.  ..... .+|+.|+++++.-.   ..+..-...||+|.+|||++|. ++......|.+++.|++
T Consensus       266 NlsWc~l~~~~Vtv~--V~his-e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVA--VAHIS-ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             CchHhhccchhhhHH--Hhhhc-hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            888777766543322  11222 33888888876421   1122223568888888888874 44444456778888888


Q ss_pred             EEccCccCCcccChh--hhhcccccceEEcCCC
Q 045210          450 LDVSTNNLNGTLSEN--HFANLTKLVGFDASGN  480 (873)
Q Consensus       450 L~L~~n~l~~~~~~~--~~~~l~~L~~L~l~~n  480 (873)
                      |.++.|..  .+|..  .+...++|.+|++.++
T Consensus       343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            88888863  23321  2345566666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=9.7e-08  Score=93.16  Aligned_cols=91  Identities=24%  Similarity=0.190  Sum_probs=64.8

Q ss_pred             cCCCCCCeecCCCCCCCCC-CCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCC
Q 045210          118 LGLKHLIHLDLSYNDFQGI-QIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHL  196 (873)
Q Consensus       118 ~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l  196 (873)
                      ..+++++.+||.+|.+++. ++...+.++++|++|+|+.|.+...|-..=..+.+|++|.|.+..+..-....+  +..+
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~--l~~l  145 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS--LDDL  145 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh--hhcc
Confidence            3568899999999998765 345566789999999999998775433222456788889888887764444333  6677


Q ss_pred             CCCcEEeCCCCCCC
Q 045210          197 SLLKHLDLSGVDLS  210 (873)
Q Consensus       197 ~~L~~L~L~~~~l~  210 (873)
                      ++++.|.++.|.+.
T Consensus       146 P~vtelHmS~N~~r  159 (418)
T KOG2982|consen  146 PKVTELHMSDNSLR  159 (418)
T ss_pred             hhhhhhhhccchhh
Confidence            77777777777443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.23  E-value=4.5e-08  Score=106.45  Aligned_cols=180  Identities=27%  Similarity=0.274  Sum_probs=118.9

Q ss_pred             ChhhhccccCcEEEcCCCcCccCCcccccCC-CCccEEEccCCccc----------ccCCcccccCCCCcEEEccCCeec
Q 045210          633 PDCWMNWSFLFFLHLGENDFTGNLPTSLGTL-SSLQILHLRGNRFS----------GKIPVSLQNCTELRLFDISENEFV  701 (873)
Q Consensus       633 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~Ls~n~l~  701 (873)
                      |-.+..+.+|+.|.+.+|.+...  ..+..+ ..|+.|. .+|.+.          |.+..++. ...|...+.++|.++
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence            44566677888888888877631  111111 1222221 222211          11111111 125777888899887


Q ss_pred             ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeee
Q 045210          702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVY  781 (873)
Q Consensus       702 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~  781 (873)
                       .+...+. -++.++.|+|++|+++..  +.+..++.|+.|||++|.++ .+|.. +. .                    
T Consensus       178 -~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l-~~-~--------------------  230 (1096)
T KOG1859|consen  178 -LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQL-SM-V--------------------  230 (1096)
T ss_pred             -hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccccc-ch-h--------------------
Confidence             5666655 389999999999999876  37888999999999999998 55531 10 0                    


Q ss_pred             cccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC-CccccCCCCCCeEeccCCcccc
Q 045210          782 KKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI-PVNMGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       782 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g  856 (873)
                                 --+|+.|.|++|.++.  -..+.+|++|+.||+|+|-+++-- -..+..+..|..|.|-+|++..
T Consensus       231 -----------gc~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  231 -----------GCKLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             -----------hhhheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence                       0125789999999873  245889999999999999887542 1234567889999999999863

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.14  E-value=7.4e-06  Score=79.27  Aligned_cols=88  Identities=27%  Similarity=0.374  Sum_probs=41.3

Q ss_pred             CCCCCCEEEccCCCCCCCCcccc----CCCCCccEEEcCCCCCCC--Cch-------hHhhcCCCCCcEEEccCCcCCCC
Q 045210          221 SLHSLETLRFSGCLLHHISPLSF----ANFSSLVTLDISDNQFAD--SSI-------VNQVLGLVNLVFLDLSTNNFQGA  287 (873)
Q Consensus       221 ~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~--~~~-------~~~~~~l~~L~~L~L~~n~l~~~  287 (873)
                      .+..+.++++++|.|......++    .+-.+|+..++++-....  ..+       ...+.+|++|+..+||.|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            35566666666666655443333    333556666555432110  111       12334455555555555555433


Q ss_pred             Chhh----hcCCCCCCEEECCCCCC
Q 045210          288 VPDA----IQNSTSLQHLDLSRNHF  308 (873)
Q Consensus       288 ~~~~----l~~l~~L~~L~l~~n~l  308 (873)
                      .|+.    +...+.|++|.+++|.+
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCC
Confidence            3322    23344555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=3.2e-07  Score=79.14  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=14.0

Q ss_pred             CCcEEEccCCeecccCChhHHhhcccCcEEEccCCee
Q 045210          689 ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF  725 (873)
Q Consensus       689 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l  725 (873)
                      ..+.+++++|.++ .+|.++.. ++.|+.|+++.|++
T Consensus        78 t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPL  112 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCcc
Confidence            3444444444443 34444332 34444444444333

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.10  E-value=6.4e-06  Score=87.17  Aligned_cols=138  Identities=17%  Similarity=0.219  Sum_probs=86.9

Q ss_pred             ccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCC
Q 045210          660 LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL  739 (873)
Q Consensus       660 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  739 (873)
                      +..+.+++.|++++|.++ .+|. +  -.+|+.|++++|.-...+|..+   .++|+.|++++|.....+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence            455789999999999877 5562 2  3469999999876555778655   46899999999944335554      57


Q ss_pred             CEEeCCCCcc--ccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcC
Q 045210          740 KILDLSSNNL--TGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNL  817 (873)
Q Consensus       740 ~~L~Ls~N~l--~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l  817 (873)
                      +.|+++++..  .+.+|+.+..|.-      ..   +.      .......+..+|.+|+.|++++|... .+|+.+.  
T Consensus       115 e~L~L~~n~~~~L~~LPssLk~L~I------~~---~n------~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--  176 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPNGLTSLSI------NS---YN------PENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--  176 (426)
T ss_pred             ceEEeCCCCCcccccCcchHhheec------cc---cc------cccccccccccCCcccEEEecCCCcc-cCccccc--
Confidence            7778877654  2456665543321      00   00      00001111123677888888887765 3454444  


Q ss_pred             CCCCeeeCCCC
Q 045210          818 VGLQTLKLSHN  828 (873)
Q Consensus       818 ~~L~~L~Ls~N  828 (873)
                      .+|+.|++++|
T Consensus       177 ~SLk~L~ls~n  187 (426)
T PRK15386        177 ESLQSITLHIE  187 (426)
T ss_pred             ccCcEEEeccc
Confidence            47788888776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=1.7e-06  Score=84.76  Aligned_cols=183  Identities=21%  Similarity=0.225  Sum_probs=104.8

Q ss_pred             ccEEEccCcccCC--ccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEE
Q 045210          399 LESLDLSNNTLFG--LLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFD  476 (873)
Q Consensus       399 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  476 (873)
                      ++++||.+|.++.  .+...+.++|.|+.|+++.|++...|...-....+|+.|.|.+..+.-.-....+..++.++.++
T Consensus        73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH  152 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH  152 (418)
T ss_pred             hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence            6666777766655  23344567888888888888877444322145677888888777665444444567788888888


Q ss_pred             cCCCeeeccccCCCCCC--CccccEEeccccccCC--CcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEecc
Q 045210          477 ASGNSLVLKVVSPSWTP--PFQLQAIGLSSCFIGP--QFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLS  552 (873)
Q Consensus       477 l~~n~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~  552 (873)
                      ++.|++......+....  .+.++++....|...-  .....-.-++++..+-+..|.+...-...-+..+|.+..|+++
T Consensus       153 mS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~  232 (418)
T KOG2982|consen  153 MSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG  232 (418)
T ss_pred             hccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhc
Confidence            88885433222221111  1133334333332110  0001112245566666666666554444444555666677777


Q ss_pred             CcccccccC--CccccCCCCeEeCCCCCCCC
Q 045210          553 YNQIFGQIP--DLNDAAQLETLDLSSNSLSG  581 (873)
Q Consensus       553 ~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~  581 (873)
                      .+++.....  .+..+++|..|.++++++..
T Consensus       233 ~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  233 ANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            777765433  56667777777777766653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=3.6e-07  Score=78.87  Aligned_cols=82  Identities=27%  Similarity=0.380  Sum_probs=38.1

Q ss_pred             ccEEEccCCcccccCCcc---cccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEE
Q 045210          666 LQILHLRGNRFSGKIPVS---LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKIL  742 (873)
Q Consensus       666 L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  742 (873)
                      +..++|++|++. .++..   +.....|+..+|++|.+. .+|..+...++.++.+++++|.++ .+|.++..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344555555543 22222   223334444555555555 455444443444455555555544 334444445555555


Q ss_pred             eCCCCccc
Q 045210          743 DLSSNNLT  750 (873)
Q Consensus       743 ~Ls~N~l~  750 (873)
                      +++.|++.
T Consensus       106 Nl~~N~l~  113 (177)
T KOG4579|consen  106 NLRFNPLN  113 (177)
T ss_pred             ccccCccc
Confidence            55555444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.05  E-value=4e-07  Score=99.31  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=17.1

Q ss_pred             cccccCCCCCCEEEccCCCCCC
Q 045210          216 PLITNSLHSLETLRFSGCLLHH  237 (873)
Q Consensus       216 ~~~~~~l~~L~~L~L~~n~l~~  237 (873)
                      +..+..+.+|++|.+.+|.+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~  123 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST  123 (1096)
T ss_pred             CceeccccceeeEEecCcchhh
Confidence            5566778889999999888764

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=9.4e-06  Score=85.95  Aligned_cols=93  Identities=16%  Similarity=0.196  Sum_probs=64.0

Q ss_pred             hhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhccc
Q 045210          635 CWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSG  714 (873)
Q Consensus       635 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~  714 (873)
                      .+..+..++.|++++|.++ .+|. +  .++|++|.+++|.-...+|..+.  ++|+.|++++|.....+|       ++
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-------~s  113 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-------ES  113 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-------cc
Confidence            3556788999999999887 5662 2  35799999998776667776553  589999999984333454       35


Q ss_pred             CcEEEccCCeee--eeCCcccCCCCCCCEEeCCC
Q 045210          715 IILLSLRANQFH--GFFPPELCGLASLKILDLSS  746 (873)
Q Consensus       715 L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~  746 (873)
                      |+.|+++++...  +.+|.      +|+.|.+.+
T Consensus       114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~  141 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPN------GLTSLSINS  141 (426)
T ss_pred             cceEEeCCCCCcccccCcc------hHhheeccc
Confidence            677778766542  23443      466777654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.88  E-value=4.8e-07  Score=92.78  Aligned_cols=301  Identities=20%  Similarity=0.181  Sum_probs=168.7

Q ss_pred             CCCCeecCCCCCCCC-CCCCccccCCCCCCEEeccCCc-CCCCCcccc-cCCCCCcEEECCCCC-CCCCccCccc-cccC
Q 045210          121 KHLIHLDLSYNDFQG-IQIPRFLGSLENLMYLNISRAG-FVGIIPHQI-GNLSNLQFLDLRPNY-LGGLYVEDFG-WVSH  195 (873)
Q Consensus       121 ~~L~~L~Ls~n~~~~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~-l~~l~~~~~~-~l~~  195 (873)
                      ..|+.|.+.++.-.+ ..+-.+..+++++++|++.++. ++...-.++ ..|++|+++++..|. ++..   .+. ....
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~---~Lk~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV---SLKYLAEG  214 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH---HHHHHHHh
Confidence            356777777665322 2234455677788888777774 222222223 457788888887742 2221   111 2346


Q ss_pred             CCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCc--cccCCCCCccEEEcCCC-CCCCCchhHhhcCCC
Q 045210          196 LSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP--LSFANFSSLVTLDISDN-QFADSSIVNQVLGLV  272 (873)
Q Consensus       196 l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~  272 (873)
                      +++|++++++.+.-...........++..++.+.+.+|.-.+...  ..=+.+..+.++++..+ .+++..+...-..+.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            788888888877533322223334556667777666654222111  11134455666665554 456555555666778


Q ss_pred             CCcEEEccCCcCCC-CChhhh-cCCCCCCEEECCCCCC-CCCCchhh-hcCCCcCEEEccCCcCCc--cCcccccCCCCC
Q 045210          273 NLVFLDLSTNNFQG-AVPDAI-QNSTSLQHLDLSRNHF-SSSVPDWF-NKFIDLEYLSLSYNELQG--SIPGSLGNLTSI  346 (873)
Q Consensus       273 ~L~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~l~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L  346 (873)
                      .|++++.+++...+ ..-.++ .++.+|+.+.+++++- +..--..+ .+++.|+.+++..+....  .+...-.+++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            88888888775432 222233 4678888888888763 22111222 367788888888776431  122223477888


Q ss_pred             CEEeCCCCcCCCcc-----hhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC--ccccccCC
Q 045210          347 KSLDLSFNRLESKI-----PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG--LLTNQIGN  419 (873)
Q Consensus       347 ~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~  419 (873)
                      +.+.+++|......     ...-..+..|+.+.+++++.....  .......|.  .|+.+++-+++-..  .+...-..
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le~l~~c~--~Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA--TLEHLSICR--NLERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH--HHHHHhhCc--ccceeeeechhhhhhhhhHHHHhh
Confidence            88888877543211     111234567888888888765432  223344444  28888888776432  12222345


Q ss_pred             CCCCCEEeC
Q 045210          420 FKNLDSLDL  428 (873)
Q Consensus       420 l~~L~~L~L  428 (873)
                      +|+++...+
T Consensus       451 lp~i~v~a~  459 (483)
T KOG4341|consen  451 LPNIKVHAY  459 (483)
T ss_pred             Cccceehhh
Confidence            666655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.82  E-value=3.2e-06  Score=86.93  Aligned_cols=256  Identities=20%  Similarity=0.195  Sum_probs=117.0

Q ss_pred             cCCCCCCEEEccCCC-CCCCCcccc-CCCCCccEEEcCCC-CCCCCchhHhhcCCCCCcEEEccCCc-CCCC-ChhhhcC
Q 045210          220 NSLHSLETLRFSGCL-LHHISPLSF-ANFSSLVTLDISDN-QFADSSIVNQVLGLVNLVFLDLSTNN-FQGA-VPDAIQN  294 (873)
Q Consensus       220 ~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~  294 (873)
                      ..++++++|.+.+|. ++...-..+ ..|++|++|++..| .+++..+.....++++|++++++++. +++. +-....+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            445555555555554 111111111 34667777777664 33322222244567777777777764 2221 2223344


Q ss_pred             CCCCCEEECCCCCCCCCCchhh----hcCCCcCEEEccCCc-CCccCc-ccccCCCCCCEEeCCCCcC-CCcchhhh-hc
Q 045210          295 STSLQHLDLSRNHFSSSVPDWF----NKFIDLEYLSLSYNE-LQGSIP-GSLGNLTSIKSLDLSFNRL-ESKIPRAF-KR  366 (873)
Q Consensus       295 l~~L~~L~l~~n~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~l-~~~~~~~l-~~  366 (873)
                      ++.++.+.+.+|.-.+  -+.+    +.+..+..+++..|. ++...- ..=..+..|+.++.+++.. +......+ .+
T Consensus       241 ~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~  318 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH  318 (483)
T ss_pred             chhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence            5556666555543211  1111    223344555554443 221110 0012455666776666543 22222222 34


Q ss_pred             CCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC--ccccccCCCCCCCEEeCCCCccC-ccc----cc
Q 045210          367 LRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG--LLTNQIGNFKNLDSLDLSFNNIS-GHI----PL  439 (873)
Q Consensus       367 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~-~~~----~~  439 (873)
                      ..+|+.+.+.+++--+.  ..+..+.....+ |+.+++..+....  .+...-.+++.|+.+.+++|... +..    ..
T Consensus       319 ~~~L~~l~l~~c~~fsd--~~ft~l~rn~~~-Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~  395 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSD--RGFTMLGRNCPH-LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS  395 (483)
T ss_pred             CCceEEEeccccchhhh--hhhhhhhcCChh-hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence            56666666666653111  111112222212 6666666654322  12222345667777777766432 110    11


Q ss_pred             cccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCC
Q 045210          440 SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN  480 (873)
Q Consensus       440 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  480 (873)
                      .-..+..|..+.+++++.+.+-....+..++.|+.+++.++
T Consensus       396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            22344566667777666554433344555556655555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.75  E-value=1.8e-05  Score=55.46  Aligned_cols=35  Identities=46%  Similarity=0.676  Sum_probs=15.9

Q ss_pred             ceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc
Q 045210          796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS  831 (873)
Q Consensus       796 L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~  831 (873)
                      |++|++++|+++ .+|.++++|++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444555555544 34444444444444444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.68  E-value=3.6e-05  Score=53.95  Aligned_cols=37  Identities=32%  Similarity=0.516  Sum_probs=18.1

Q ss_pred             CCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCC
Q 045210          147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG  184 (873)
Q Consensus       147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  184 (873)
                      +|++|++++|+++. +|..+++|++|++|++++|++++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence            45555555555542 34345555555555555555443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.61  E-value=2.4e-05  Score=90.43  Aligned_cols=107  Identities=23%  Similarity=0.358  Sum_probs=59.7

Q ss_pred             ccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCC-CCccccCCCCCccEEEcCCCCCCCCc-hh----H
Q 045210          193 VSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHH-ISPLSFANFSSLVTLDISDNQFADSS-IV----N  266 (873)
Q Consensus       193 l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~-~~----~  266 (873)
                      +.++++|+.||+|+++++.+    ..++.+++|++|.+.+-.+.. ..-..+.++++|++||+|.....+.. +.    +
T Consensus       169 c~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYle  244 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLE  244 (699)
T ss_pred             hhccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHH
Confidence            34455555555555555444    234555555555555555443 22234566788888888877654332 22    2


Q ss_pred             hhcCCCCCcEEEccCCcCCCCChhhh-cCCCCCCEEEC
Q 045210          267 QVLGLVNLVFLDLSTNNFQGAVPDAI-QNSTSLQHLDL  303 (873)
Q Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l  303 (873)
                      .-..+++|+.||.|++.+.+.+-+.+ ...++|+.+..
T Consensus       245 c~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  245 CGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             hcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence            22357889999988887775544333 34455555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.51  E-value=5.6e-05  Score=87.42  Aligned_cols=84  Identities=26%  Similarity=0.283  Sum_probs=38.5

Q ss_pred             CCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCC-CCchhhhcCCCcCE
Q 045210          246 FSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEY  324 (873)
Q Consensus       246 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~  324 (873)
                      +|.|+.|.+++-.+..........++++|..||+|+++++..  ..++++++|++|.+.+=.+.. ..-..+.++++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            345555555554444333444444555555555555555422  344555555555554433331 11122334555555


Q ss_pred             EEccCCc
Q 045210          325 LSLSYNE  331 (873)
Q Consensus       325 L~L~~n~  331 (873)
                      ||+|..+
T Consensus       225 LDIS~~~  231 (699)
T KOG3665|consen  225 LDISRDK  231 (699)
T ss_pred             eeccccc
Confidence            5555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.48  E-value=0.00019  Score=66.90  Aligned_cols=82  Identities=23%  Similarity=0.286  Sum_probs=46.3

Q ss_pred             cEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEc
Q 045210          200 KHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDL  279 (873)
Q Consensus       200 ~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  279 (873)
                      ..+||++|++...+.    +..++.|.+|.+++|+|+.+.|..-.-+++|..|.|.+|.+..-.-...+..|++|++|.+
T Consensus        45 d~iDLtdNdl~~l~~----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDN----LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ceecccccchhhccc----CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            344444454444432    3345666666666676666666555555667777777766653333344455566666666


Q ss_pred             cCCcCC
Q 045210          280 STNNFQ  285 (873)
Q Consensus       280 ~~n~l~  285 (873)
                      -+|.++
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.27  E-value=0.00045  Score=64.53  Aligned_cols=90  Identities=24%  Similarity=0.184  Sum_probs=44.7

Q ss_pred             cCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCc---ccc
Q 045210          167 GNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP---LSF  243 (873)
Q Consensus       167 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l  243 (873)
                      ..++.|.+|.+.+|+|+.+.+..   -.-+++|..|.+.+|.+..+.+ ...+..+|+|++|.+-+|.++...-   -.+
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl  136 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVL  136 (233)
T ss_pred             CCccccceEEecCCcceeeccch---hhhccccceEEecCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEE
Confidence            33444444444444444433321   1223344444444444444332 1223455666666666665554432   345


Q ss_pred             CCCCCccEEEcCCCCCC
Q 045210          244 ANFSSLVTLDISDNQFA  260 (873)
Q Consensus       244 ~~l~~L~~L~L~~n~l~  260 (873)
                      ..+++|+.||+......
T Consensus       137 ~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  137 YKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             EecCcceEeehhhhhHH
Confidence            67788888888876554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=0.00018  Score=70.30  Aligned_cols=98  Identities=21%  Similarity=0.214  Sum_probs=64.8

Q ss_pred             eeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCC--cCCCCCcccccCCCCCcEEECCCCCCCCCcc
Q 045210          110 VGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRA--GFVGIIPHQIGNLSNLQFLDLRPNYLGGLYV  187 (873)
Q Consensus       110 ~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~  187 (873)
                      .|.+..-.-.+..|+.|++.+..++..   ..+-.+++|++|.++.|  +.++.++.-..++++|+++++++|+|..+  
T Consensus        32 ~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--  106 (260)
T KOG2739|consen   32 AGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--  106 (260)
T ss_pred             CCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc--
Confidence            344444445566677777777666542   33556788999999998  66666666666778888898888887652  


Q ss_pred             CccccccCCCCCcEEeCCCCCCCCC
Q 045210          188 EDFGWVSHLSLLKHLDLSGVDLSKT  212 (873)
Q Consensus       188 ~~~~~l~~l~~L~~L~L~~~~l~~~  212 (873)
                      ..+.-+..+++|..|++.+|..+..
T Consensus       107 stl~pl~~l~nL~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen  107 STLRPLKELENLKSLDLFNCSVTNL  131 (260)
T ss_pred             cccchhhhhcchhhhhcccCCcccc
Confidence            2333356666666666666655554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=8.7e-05  Score=72.35  Aligned_cols=85  Identities=24%  Similarity=0.257  Sum_probs=49.2

Q ss_pred             CCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcE
Q 045210          197 SLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVF  276 (873)
Q Consensus       197 ~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  276 (873)
                      .+.+.|++.++.+.++.    ...+++.|++|.|+-|+|+...|  +..|++|+.|.|..|.+.+-.-..-+.++++|+.
T Consensus        19 ~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            34445555555555442    33456666666666666665533  5566666666666666654444445566666666


Q ss_pred             EEccCCcCCCC
Q 045210          277 LDLSTNNFQGA  287 (873)
Q Consensus       277 L~L~~n~l~~~  287 (873)
                      |+|..|.-.|.
T Consensus        93 LWL~ENPCc~~  103 (388)
T KOG2123|consen   93 LWLDENPCCGE  103 (388)
T ss_pred             HhhccCCcccc
Confidence            66666655543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.81  E-value=0.0002  Score=81.95  Aligned_cols=114  Identities=25%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             CCCCcEEECCCCC-CCCCccCccccccCCCCCcEEeCCCC-CCCC-CCC-ccccccCCCCCCEEEccCCC-CCCCCcccc
Q 045210          169 LSNLQFLDLRPNY-LGGLYVEDFGWVSHLSLLKHLDLSGV-DLSK-TSD-GPLITNSLHSLETLRFSGCL-LHHISPLSF  243 (873)
Q Consensus       169 l~~L~~L~L~~n~-l~~l~~~~~~~l~~l~~L~~L~L~~~-~l~~-~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l  243 (873)
                      ++.|+.+.+..+. +....  .......++.|+.|+++++ .... .+. .......+++|+.|+++.+. ++...-..+
T Consensus       187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            5566666665542 11111  0122345555555555542 1111 110 01122334555555555555 343333333


Q ss_pred             CC-CCCccEEEcCCCC-CCCCchhHhhcCCCCCcEEEccCCcC
Q 045210          244 AN-FSSLVTLDISDNQ-FADSSIVNQVLGLVNLVFLDLSTNNF  284 (873)
Q Consensus       244 ~~-l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l  284 (873)
                      .. +++|+.|.+.++. +++..+......++.|++|+++++..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            32 5566666655554 45445555555556666666665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.60  E-value=0.0004  Score=79.38  Aligned_cols=113  Identities=31%  Similarity=0.375  Sum_probs=48.0

Q ss_pred             CCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCC-CCCCCCc----cccCCCCCccEEEcCCCC-CCCCchhHhh
Q 045210          195 HLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC-LLHHISP----LSFANFSSLVTLDISDNQ-FADSSIVNQV  268 (873)
Q Consensus       195 ~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~l~~L~~L~L~~n~-l~~~~~~~~~  268 (873)
                      .++.|+.+.+..+.-............++.|++|+++++ ......+    .....+++|+.|+++++. +++..+....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356666666655532222112233445566666666552 1111111    122334555555555554 4433333223


Q ss_pred             cCCCCCcEEEccCCc-CCCC-ChhhhcCCCCCCEEECCCCC
Q 045210          269 LGLVNLVFLDLSTNN-FQGA-VPDAIQNSTSLQHLDLSRNH  307 (873)
Q Consensus       269 ~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~  307 (873)
                      ..+++|++|.+.+|. +++. +-.....++.|++|+++++.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            334555555544444 2322 11222334445555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.60  E-value=0.0037  Score=56.58  Aligned_cols=97  Identities=18%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             cCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCE
Q 045210          269 LGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKS  348 (873)
Q Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  348 (873)
                      .++++|+.+.+..+ +...-..++.++++++.+.+.. .+.......+..+++|+.+++..+ +.......+.++ .|+.
T Consensus        32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~  107 (129)
T PF13306_consen   32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE  107 (129)
T ss_dssp             TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred             cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence            33444444444432 3322233444554555555543 222122234445555666655443 332333344554 5666


Q ss_pred             EeCCCCcCCCcchhhhhcCCCC
Q 045210          349 LDLSFNRLESKIPRAFKRLRHL  370 (873)
Q Consensus       349 L~L~~n~l~~~~~~~l~~l~~L  370 (873)
                      +.+.. .+.......|.++++|
T Consensus       108 i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  108 INIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EE-TT-B-SS----GGG-----
T ss_pred             EEECC-CccEECCccccccccC
Confidence            65553 3333333445554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.0012  Score=64.49  Aligned_cols=62  Identities=31%  Similarity=0.353  Sum_probs=31.5

Q ss_pred             CCCCCCEEECCCC--CCCCCCchhhhcCCCcCEEEccCCcCCccCccc---ccCCCCCCEEeCCCCcCC
Q 045210          294 NSTSLQHLDLSRN--HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS---LGNLTSIKSLDLSFNRLE  357 (873)
Q Consensus       294 ~l~~L~~L~l~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~  357 (873)
                      .+++|++|.++.|  ++.+.++-....+++|+++++++|++..  ++.   +..+.+|..|++.+|..+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            4455566666665  4444444334445666666666666541  222   334445555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.35  E-value=0.0067  Score=54.87  Aligned_cols=81  Identities=20%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             cCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEE
Q 045210          614 NSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF  693 (873)
Q Consensus       614 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  693 (873)
                      ++++|+.+.+.. .+...-..+|.++++|+.+.+.++ +...-...|.++++++.+.+.+ .+.......|..+++|+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            355555555553 333333445555555555555553 3322233445555555555543 2222333444445555555


Q ss_pred             EccC
Q 045210          694 DISE  697 (873)
Q Consensus       694 ~Ls~  697 (873)
                      ++..
T Consensus        87 ~~~~   90 (129)
T PF13306_consen   87 DIPS   90 (129)
T ss_dssp             EETT
T ss_pred             ccCc
Confidence            5543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.00026  Score=69.14  Aligned_cols=60  Identities=20%  Similarity=0.247  Sum_probs=36.4

Q ss_pred             CCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCC
Q 045210          120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG  184 (873)
Q Consensus       120 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  184 (873)
                      +.+.+.|+..+|.+.++.   ...+++.|++|.|+-|.++..-|  +..|++|+.|.|+.|.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s   77 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES   77 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc
Confidence            556677777777777652   23456667777777766654433  4555555555555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.82  E-value=0.0036  Score=36.36  Aligned_cols=20  Identities=45%  Similarity=0.697  Sum_probs=11.1

Q ss_pred             CCeEeccCCcccccccccccc
Q 045210          844 VEALDFSSNRLQGEIPKNMVN  864 (873)
Q Consensus       844 L~~L~ls~N~l~g~iP~~l~~  864 (873)
                      |+.||+++|+++ .||+++++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455666666555 55555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.37  E-value=0.0049  Score=35.78  Aligned_cols=19  Identities=47%  Similarity=0.723  Sum_probs=9.9

Q ss_pred             ceEEECCCCcccccCChhhh
Q 045210          796 LKVLDLSANYFSGEIPSQVT  815 (873)
Q Consensus       796 L~~L~ls~n~l~~~ip~~l~  815 (873)
                      |+.||+++|+++ .||++++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.97  E-value=0.00042  Score=76.74  Aligned_cols=41  Identities=29%  Similarity=0.461  Sum_probs=22.7

Q ss_pred             CCeeeCCCCcCccc----CCccccCCCCCCeEeccCCcccccccc
Q 045210          820 LQTLKLSHNFFSGR----IPVNMGAMKSVEALDFSSNRLQGEIPK  860 (873)
Q Consensus       820 L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~g~iP~  860 (873)
                      +..+++..+...+.    ++..++....++.+++++|.....-+.
T Consensus       378 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~  422 (478)
T KOG4308|consen  378 LLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAE  422 (478)
T ss_pred             cchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHH
Confidence            33444444444433    444555666777777777766544443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.38  E-value=0.0016  Score=72.27  Aligned_cols=66  Identities=26%  Similarity=0.369  Sum_probs=29.0

Q ss_pred             cCCCCCccEEEcCCCCCCCCchhHhhcCC----CCCcEEEccCCcCCC----CChhhhcCCCCCCEEECCCCCC
Q 045210          243 FANFSSLVTLDISDNQFADSSIVNQVLGL----VNLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDLSRNHF  308 (873)
Q Consensus       243 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l----~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l  308 (873)
                      +.....|..|++++|.+.+.........+    ..+++|++..|.+++    .+.+.+.....++.++++.|.+
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            34445555566666655532222111111    234445555554443    2333344444555555555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.78  E-value=0.2  Score=26.86  Aligned_cols=11  Identities=55%  Similarity=0.634  Sum_probs=3.5

Q ss_pred             CcEEECCCCCC
Q 045210          172 LQFLDLRPNYL  182 (873)
Q Consensus       172 L~~L~L~~n~l  182 (873)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.34  E-value=0.45  Score=28.78  Aligned_cols=22  Identities=45%  Similarity=0.505  Sum_probs=13.4

Q ss_pred             CCCCcEEECCCCCCCCCccCcc
Q 045210          169 LSNLQFLDLRPNYLGGLYVEDF  190 (873)
Q Consensus       169 l~~L~~L~L~~n~l~~l~~~~~  190 (873)
                      +++|++|+|++|.+..++...|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3456666666666666665533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.34  E-value=0.45  Score=28.78  Aligned_cols=22  Identities=45%  Similarity=0.505  Sum_probs=13.4

Q ss_pred             CCCCcEEECCCCCCCCCccCcc
Q 045210          169 LSNLQFLDLRPNYLGGLYVEDF  190 (873)
Q Consensus       169 l~~L~~L~L~~n~l~~l~~~~~  190 (873)
                      +++|++|+|++|.+..++...|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3456666666666666665533

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.14  E-value=0.14  Score=48.51  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=18.6

Q ss_pred             CCEEEccCCCCCCCCccccCCCCCccEEEcCCCC
Q 045210          225 LETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ  258 (873)
Q Consensus       225 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  258 (873)
                      ++.++.+++.|..+.-..+.+++.++.|.+.+|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            4455555555555544555555556666665553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.98  E-value=0.073  Score=51.18  Aligned_cols=58  Identities=17%  Similarity=0.099  Sum_probs=44.8

Q ss_pred             ceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210          796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       796 L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  855 (873)
                      +..||+|.|++. ..|+.++++..+..+++.+|..+ ..|.+++..+.++.+|+-.|++.
T Consensus        67 ~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   67 LVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            366788888776 67888888877888887777777 67788888888888888887764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.44  E-value=0.77  Score=27.73  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=12.6

Q ss_pred             CCCcEEEccCCeecccCChhHH
Q 045210          688 TELRLFDISENEFVGNIPTWIG  709 (873)
Q Consensus       688 ~~L~~L~Ls~n~l~~~ip~~~~  709 (873)
                      ++|+.|++++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5565543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.44  E-value=0.77  Score=27.73  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=12.6

Q ss_pred             CCCcEEEccCCeecccCChhHH
Q 045210          688 TELRLFDISENEFVGNIPTWIG  709 (873)
Q Consensus       688 ~~L~~L~Ls~n~l~~~ip~~~~  709 (873)
                      ++|+.|++++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5565543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.49  E-value=0.44  Score=28.19  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=12.2

Q ss_pred             CCCCEEeCCCCccccccChhh
Q 045210          737 ASLKILDLSSNNLTGVIPRCI  757 (873)
Q Consensus       737 ~~L~~L~Ls~N~l~~~ip~~l  757 (873)
                      ++|+.|+|++|++++.....+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            567777888877775544433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.69  E-value=0.66  Score=27.41  Aligned_cols=15  Identities=27%  Similarity=0.519  Sum_probs=6.6

Q ss_pred             CCCcEEEccCCeecc
Q 045210          688 TELRLFDISENEFVG  702 (873)
Q Consensus       688 ~~L~~L~Ls~n~l~~  702 (873)
                      ++|++|+|++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555543

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.29  E-value=0.025  Score=54.24  Aligned_cols=59  Identities=20%  Similarity=0.134  Sum_probs=28.9

Q ss_pred             CCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcC
Q 045210          296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL  356 (873)
Q Consensus       296 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  356 (873)
                      +.+..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..+.++++++..+.+
T Consensus        65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            33444444444443 34444444444555555554444 4455555555555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	873
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-40
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-38
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-25
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-40
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-38
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-25
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-11
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-09
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		9e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		5e-08
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		5e-08
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-07
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		1e-07
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-07
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-07
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		5e-06
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-06
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		4e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		9e-06
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		1e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		1e-05
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		4e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		5e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		6e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		8e-05
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		9e-05
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		9e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		9e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		1e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		1e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		2e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		5e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		5e-04
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		5e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 197/680 (28%), Positives = 299/680 (43%), Gaps = 88/680 (12%)
Query: 207 VDLSKTS-DGPLIT-NSLHSLETLRF---SGCLLHHISPLSFA-NFSSLVTLDISDNQFA 260
           +DLS+ S  GP+ T  SL S   L+F   S   L     +S     +SL  LD+S N  +
Sbjct: 102 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 161
Query: 261 DSSIVNQVL--GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNK 318
            +++V  VL  G   L  L +S N   G V   +    +L+ LD+S N+FS+ +P +   
Sbjct: 162 GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGD 218
Query: 319 FIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
              L++L +S N+L G    ++   T +K L++S N+    IP     L+ L+ ++L+ N
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 276
Query: 379 KLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438
           K + EI      F + A + L  LDLS N  +G +    G+   L+SL LS NN SG +P
Sbjct: 277 KFTGEIPD----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 439 L-SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSP-SWTPPFQ 496
           + +L ++  L+ LD+S N  +G L E+       L+  D S N+    ++      P   
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 497 LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
           LQ + L +     + P  L + + L+ L LS + +S TIP  L  SLS++  L L  N +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNML 451
Query: 557 FGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSM 616
            G+IP                                                 E+    
Sbjct: 452 EGEIPQ------------------------------------------------ELMYVK 463
Query: 617 RLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF 676
            L+ L L  N L+GEIP    N + L ++ L  N  TG +P  +G L +L IL L  N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPP----- 731
           SG IP  L +C  L   D++ N F G IP  + ++ SG I  +  A + + +        
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMKK 582
Query: 732 ---------ELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK--FFEDALXX 780
                    E  G+ S ++  LS+ N   +  R      G      + +    F D    
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY---GGHTSPTFDNNGSMMFLDMSYN 639
Query: 781 XXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGA 840
                          L +L+L  N  SG IP +V +L GL  L LS N   GRIP  M A
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 841 MKSVEALDFSSNRLQGEIPK 860
           +  +  +D S+N L G IP+
Sbjct: 700 LTMLTEIDLSNNNLSGPIPE 719

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  155 bits (393), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 198/684 (28%), Positives = 269/684 (39%), Gaps = 155/684 (22%)
Query: 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW--FNKFIDLEYLSLSYNELQ--G 334
           LS ++  G+V    + S SL  LDLSRN  S  V           L++L++S N L   G
Sbjct: 81  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 335 SIPGSLGNLTSIKSLDLSFNRLESK------IPRAFKRLRHLRSVNLSGNKLSQEIS--- 385
            + G L  L S++ LDLS N +         +      L+HL    +SGNK+S ++    
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSR 195
Query: 386 ----QVLDMFSACAS---------NVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNN 432
               + LD+ S   S         + L+ LD+S N L G  +  I     L  L++S N 
Sbjct: 196 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 433 ISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWT 492
             G IP     L SL+YL ++ N   G + +        L G D SGN     V      
Sbjct: 256 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV------ 307
Query: 493 PPF------QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQI 546
           PPF             S+ F G      LL    L  LDLS +  S  +P+ L    + +
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 547 NYLNLSYNQIFGQI-PDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLS 605
             L+LS N   G I P+L                                          
Sbjct: 368 LTLDLSSNNFSGPILPNL------------------------------------------ 385
Query: 606 RFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLS- 664
              C    N+  LQ L L NN  +G+IP    N S L  LHL  N  +G +P+SLG+LS 
Sbjct: 386 ---CQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 665 -----------------------SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFV 701
                                  +L+ L L  N  +G+IP  L NCT L    +S N   
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCI---- 757
           G IP WIG RL  + +L L  N F G  P EL    SL  LDL++N   G IP  +    
Sbjct: 501 GEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Query: 758 -----NNLA----------GMAKE------VLEVDKFFEDALXXXXXXXXXXXXXXXX-- 794
                N +A          GM KE      +LE      + L                  
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 795 ----------XLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSV 844
                      +  LD+S N  SG IP ++ ++  L  L L HN  SG IP  +G ++ +
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 845 EALDFSSNRLQGEIPKNMVNLEFL 868
             LD SSN+L G IP+ M  L  L
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTML 703

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 137/460 (29%), Positives = 194/460 (42%), Gaps = 72/460 (15%)
Query: 423 LDSLDLSFNNISGHIPL--SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
           L SLDLS N++SG +    SLG  S L++L+VS+N L+     +    L  L   D S N
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 481 SLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN--HLIYLDLSNSSISDTIPDR 538
           S+                         G     W+LS     L +L +S + IS    D 
Sbjct: 159 SIS------------------------GANVVGWVLSDGCGELKHLAISGNKISG---DV 191
Query: 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXX 598
            V     + +L++S N     IP L D + L+                            
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ---------------------HLDISGN 230
Query: 599 XXXGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
              G  SR     ++    L++LN+ +N   G IP   +    L +L L EN FTG +P 
Sbjct: 231 KLSGDFSR----AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPD 284
Query: 659 SL-GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717
            L G   +L  L L GN F G +P    +C+ L    +S N F G +P     ++ G+ +
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 718 LSLRANQFHGFFPPELCGL-ASLKILDLSSNNLTG-VIPRCINNLAGMAKEVLEVDKFFE 775
           L L  N+F G  P  L  L ASL  LDLSSNN +G ++P    N     +E+   +  F 
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 776 DALXXXXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP 835
             +                 L  L LS NY SG IPS + +L  L+ LKL  N   G IP
Sbjct: 405 GKIPPTLSNCSE--------LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 836 VNMGAMKSVEALDFSSNRLQGEIP---KNMVNLEFLEIFN 872
             +  +K++E L    N L GEIP    N  NL ++ + N
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 39/190 (20%)
Query: 688 TELRLFDISENEFVGNIPTWIG-ERLSGIILLSLRANQFHGFFPPELCG---LASLKILD 743
             L   D+S N   G + T       SG+  L++ +N     FP ++ G   L SL++LD
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 154
Query: 744 LSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALXXXXXXXXXXXXXXXXXLKVLDLSA 803
           LS+N+++G       N+ G             D                   LK L +S 
Sbjct: 155 LSANSISGA------NVVGWV---------LSDGC---------------GELKHLAISG 184
Query: 804 NYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMV 863
           N  SG++   V+  V L+ L +S N FS  IP  +G   +++ LD S N+L G+  + + 
Sbjct: 185 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 864 NLEFLEIFNI 873
               L++ NI
Sbjct: 242 TCTELKLLNI 251

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 197/680 (28%), Positives = 299/680 (43%), Gaps = 88/680 (12%)
Query: 207 VDLSKTS-DGPLIT-NSLHSLETLRF---SGCLLHHISPLSFA-NFSSLVTLDISDNQFA 260
           +DLS+ S  GP+ T  SL S   L+F   S   L     +S     +SL  LD+S N  +
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164
Query: 261 DSSIVNQVL--GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNK 318
            +++V  VL  G   L  L +S N   G V   +    +L+ LD+S N+FS+ +P +   
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGD 221
Query: 319 FIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
              L++L +S N+L G    ++   T +K L++S N+    IP     L+ L+ ++L+ N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279
Query: 379 KLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438
           K + EI      F + A + L  LDLS N  +G +    G+   L+SL LS NN SG +P
Sbjct: 280 KFTGEIPD----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 439 L-SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSP-SWTPPFQ 496
           + +L ++  L+ LD+S N  +G L E+       L+  D S N+    ++      P   
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 497 LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
           LQ + L +     + P  L + + L+ L LS + +S TIP  L  SLS++  L L  N +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNML 454
Query: 557 FGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSM 616
            G+IP                                                 E+    
Sbjct: 455 EGEIPQ------------------------------------------------ELMYVK 466
Query: 617 RLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF 676
            L+ L L  N L+GEIP    N + L ++ L  N  TG +P  +G L +L IL L  N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPP----- 731
           SG IP  L +C  L   D++ N F G IP  + ++ SG I  +  A + + +        
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMKK 585
Query: 732 ---------ELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK--FFEDALXX 780
                    E  G+ S ++  LS+ N   +  R      G      + +    F D    
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY---GGHTSPTFDNNGSMMFLDMSYN 642
Query: 781 XXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGA 840
                          L +L+L  N  SG IP +V +L GL  L LS N   GRIP  M A
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 841 MKSVEALDFSSNRLQGEIPK 860
           +  +  +D S+N L G IP+
Sbjct: 703 LTMLTEIDLSNNNLSGPIPE 722

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  155 bits (392), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 198/684 (28%), Positives = 269/684 (39%), Gaps = 155/684 (22%)
Query: 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW--FNKFIDLEYLSLSYNELQ--G 334
           LS ++  G+V    + S SL  LDLSRN  S  V           L++L++S N L   G
Sbjct: 84  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 335 SIPGSLGNLTSIKSLDLSFNRLESK------IPRAFKRLRHLRSVNLSGNKLSQEIS--- 385
            + G L  L S++ LDLS N +         +      L+HL    +SGNK+S ++    
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSR 198
Query: 386 ----QVLDMFSACAS---------NVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNN 432
               + LD+ S   S         + L+ LD+S N L G  +  I     L  L++S N 
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 433 ISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWT 492
             G IP     L SL+YL ++ N   G + +        L G D SGN     V      
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV------ 310
Query: 493 PPF------QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQI 546
           PPF             S+ F G      LL    L  LDLS +  S  +P+ L    + +
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 547 NYLNLSYNQIFGQI-PDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLS 605
             L+LS N   G I P+L                                          
Sbjct: 371 LTLDLSSNNFSGPILPNL------------------------------------------ 388
Query: 606 RFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLS- 664
              C    N+  LQ L L NN  +G+IP    N S L  LHL  N  +G +P+SLG+LS 
Sbjct: 389 ---CQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 665 -----------------------SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFV 701
                                  +L+ L L  N  +G+IP  L NCT L    +S N   
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCI---- 757
           G IP WIG RL  + +L L  N F G  P EL    SL  LDL++N   G IP  +    
Sbjct: 504 GEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 758 -----NNLA----------GMAKE------VLEVDKFFEDALXXXXXXXXXXXXXXXX-- 794
                N +A          GM KE      +LE      + L                  
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 795 ----------XLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSV 844
                      +  LD+S N  SG IP ++ ++  L  L L HN  SG IP  +G ++ +
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 845 EALDFSSNRLQGEIPKNMVNLEFL 868
             LD SSN+L G IP+ M  L  L
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTML 706

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 137/460 (29%), Positives = 194/460 (42%), Gaps = 72/460 (15%)
Query: 423 LDSLDLSFNNISGHIPL--SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
           L SLDLS N++SG +    SLG  S L++L+VS+N L+     +    L  L   D S N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 481 SLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN--HLIYLDLSNSSISDTIPDR 538
           S+                         G     W+LS     L +L +S + IS    D 
Sbjct: 162 SIS------------------------GANVVGWVLSDGCGELKHLAISGNKISG---DV 194
Query: 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXX 598
            V     + +L++S N     IP L D + L+                            
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ---------------------HLDISGN 233
Query: 599 XXXGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
              G  SR     ++    L++LN+ +N   G IP   +    L +L L EN FTG +P 
Sbjct: 234 KLSGDFSR----AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPD 287
Query: 659 SL-GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717
            L G   +L  L L GN F G +P    +C+ L    +S N F G +P     ++ G+ +
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 718 LSLRANQFHGFFPPELCGL-ASLKILDLSSNNLTG-VIPRCINNLAGMAKEVLEVDKFFE 775
           L L  N+F G  P  L  L ASL  LDLSSNN +G ++P    N     +E+   +  F 
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 776 DALXXXXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP 835
             +                 L  L LS NY SG IPS + +L  L+ LKL  N   G IP
Sbjct: 408 GKIPPTLSNCSE--------LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 836 VNMGAMKSVEALDFSSNRLQGEIP---KNMVNLEFLEIFN 872
             +  +K++E L    N L GEIP    N  NL ++ + N
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 39/190 (20%)
Query: 688 TELRLFDISENEFVGNIPTWIG-ERLSGIILLSLRANQFHGFFPPELCG---LASLKILD 743
             L   D+S N   G + T       SG+  L++ +N     FP ++ G   L SL++LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 157
Query: 744 LSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALXXXXXXXXXXXXXXXXXLKVLDLSA 803
           LS+N+++G       N+ G             D                   LK L +S 
Sbjct: 158 LSANSISGA------NVVGWV---------LSDGC---------------GELKHLAISG 187
Query: 804 NYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMV 863
           N  SG++   V+  V L+ L +S N FS  IP  +G   +++ LD S N+L G+  + + 
Sbjct: 188 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 864 NLEFLEIFNI 873
               L++ NI
Sbjct: 245 TCTELKLLNI 254

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 24/233 (10%)
Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299
           P S AN   L  L I         I   +  L  L +L ++  N  GA+PD +    +L 
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI-KSLDLSFNRLES 358
            LD S N  S ++P   +   +L  ++   N + G+IP S G+ + +  S+ +S NRL  
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 359 KIPRAFKRLRHLRSVNLSGNKL-------------SQEI-----SQVLDMFSACASNVLE 400
           KIP  F  L +L  V+LS N L             +Q+I     S   D+     S  L 
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
            LDL NN ++G L   +   K L SL++SFNN+ G IP    Q  +L+  DVS
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVS 296

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 107/273 (39%), Gaps = 46/273 (16%)
Query: 608 LCNEMNNSMRLQVLNLGNNTLSGE--IPDCWMNWSFLFFLHLGE-NDFTGNLPTSLGTLS 664
           LC+    + R+  L+L    L     IP    N  +L FL++G  N+  G +P ++  L+
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 665 SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQ 724
            L  L++     SG IP  L     L   D S N   G +P  I   L  ++ ++   N+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNR 160
Query: 725 FHGFFPPELCGLASL-KILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALXXXXX 783
             G  P      + L   + +S N LTG IP    NL                       
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----------------------- 197
Query: 784 XXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN---FFSGRIPVNMGA 840
                       L  +DLS N   G+      +    Q + L+ N   F  G++    G 
Sbjct: 198 -----------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----GL 242
Query: 841 MKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
            K++  LD  +NR+ G +P+ +  L+FL   N+
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS 311
           L +  N+  D S + +   L NL +L L+ N  Q          T+L+ L L  N   S 
Sbjct: 68  LALGGNKLHDISALKE---LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 312 VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLR 371
               F+K  +L YL+L++N+LQ    G    LT++  LDLS+N+L+S     F +L  L+
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Query: 372 SVNLSGNKLSQEISQVLDMFSA 393
            + L  N+L      V D  ++
Sbjct: 185 DLRLYQNQLKSVPDGVFDRLTS 206

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 159/344 (46%), Gaps = 43/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L++L  + FS   L  I+PL   N + LV + +++NQ AD   +  +  L NL  L L  
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N       D ++N T+L  L+LS N  S       +    L+ LS S N++    P  L 
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           NLT+++ LD+S N++ S I     +L +L S+  + N++S       D+        L+ 
Sbjct: 171 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 221
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
           L L+ N L  + T  + +  NL  LDL+ N IS   PLS L +L+ L+            
Sbjct: 222 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 267
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
           L  N  +N++ L G  A  N  + +      +P   L+ +   + +   I    P   L+
Sbjct: 268 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
           +   ++   SN+ +SD      + +L+ IN+L+  +NQI    P
Sbjct: 328 KLQRLFF--SNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 366

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 235 LHHISPLSFANFSSLVTLDISDN--QFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI 292
           L  +   +F   + L  L ++DN  Q   + I  +   L NL  L ++ N  Q       
Sbjct: 49  LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---LKNLETLWVTDNKLQALPIGVF 105
Query: 293 QNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS 352
               +L  L L RN   S  P  F+    L YLSL YNELQ    G    LTS+K L L 
Sbjct: 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165
Query: 353 FNRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382
            N+L+     AF +L  L+++ L  N+L +
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 5/184 (2%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           LDL +N        A    T L+ L L+ N   +     F +  +LE L ++ N+LQ   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACAS 396
            G    L ++  L L  N+L+S  PR F  L  L  ++L  N+L      V D  ++   
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS--- 158
Query: 397 NVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNN 456
             L+ L L NN L  +          L +L L  N +      +   L  L+ L +  N 
Sbjct: 159 --LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
Query: 457 LNGT 460
            + T
Sbjct: 217 WDCT 220

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 158/344 (45%), Gaps = 43/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L++L  + FS   L  I+PL   N + LV + +++NQ AD   +  +  L NL  L L  
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N       D ++N T+L  L+LS N  S       +    L+ LS S N++    P  L 
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           NLT+++ LD+S N++ S I     +L +L S+  + N++S       D+        L+ 
Sbjct: 171 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 221
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
           L L+ N L  + T  + +  NL  LDL+ N IS   PLS L +L+ L+            
Sbjct: 222 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 267
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
           L  N  +N++ L G  A  N  + +      +P   L+ +   + +   I    P   L+
Sbjct: 268 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
           +   ++    N+ +SD      + +L+ IN+L+  +NQI    P
Sbjct: 328 KLQRLFF--YNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 366

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 34/270 (12%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           AVP+ I   T L  LDL +N   +   D F  F  LE L L+ N +    PG+  NL ++
Sbjct: 25  AVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
           ++L L  NRL+      F  L +L  +++S NK    I  +LD       N L+SL++ +
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK----IVILLDYMFQDLYN-LKSLEVGD 137
Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHF 466
           N L  +         +L+ L L   N++     +L  L  L  L +   N+N  + +  F
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSF 196
Query: 467 ANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDL 526
             L +            LKV+  S  P            ++    P  L   N L  L +
Sbjct: 197 KRLYR------------LKVLEISHWP------------YLDTMTPNCLYGLN-LTSLSI 231
Query: 527 SNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
           ++ +++  +P   V+ L  + +LNLSYN I
Sbjct: 232 THCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 43/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L++L  + FS   L  I+PL   N + LV + +++NQ AD   +  +  L NL  L L  
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N       D ++N T+L  L+LS N  S       +    L+ L+ S N++    P  L 
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LA 170
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           NLT+++ LD+S N++ S I     +L +L S+  + N++S       D+        L+ 
Sbjct: 171 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 221
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
           L L+ N L  + T  + +  NL  LDL+ N IS   PLS L +L+ L+            
Sbjct: 222 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 267
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
           L  N  +N++ L G  A  N  + +      +P   L+ +   + +   I    P   L+
Sbjct: 268 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
           +   ++    N+ +SD      + +L+ IN+L+  +NQI    P
Sbjct: 328 KLQRLFF--YNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 366

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 141/570 (24%), Positives = 220/570 (38%), Gaps = 110/570 (19%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFAD----------------------SSIVNQVLGL- 271
           L  + P +F  +S L  LD   N  +                       S I +Q     
Sbjct: 37  LRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFC 96
Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS--------VPDWFNKFIDLE 323
            NL  LDL +N+      +  +N  +L  LDLS N  SS+                   +
Sbjct: 97  TNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNK 156
Query: 324 YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQE 383
            L+L   EL+      LGN +S++ LDLS N L+   P  F+ +  L ++ L+  +L+  
Sbjct: 157 ILALRSEELEF-----LGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPH 210
Query: 384 ISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK--NLDSLDLSFNNISGHIPLSL 441
           +++ L      ++  +++L L+NN L     +     K  NL  LDLS+NN+      S 
Sbjct: 211 LTEKLCW--ELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSF 268
Query: 442 GQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIG 501
             L SLRYL +  NN+   LS   F  L+ L         L LK         F  Q++ 
Sbjct: 269 SYLPSLRYLSLEYNNIQ-RLSPRSFYGLSNL-------RYLSLKRA-------FTKQSVS 313
Query: 502 LSSCFIGPQFP-QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQI 560
           L+S      F  QWL    +L YL++ +++I  T  +     L  + YL+LS  + F  +
Sbjct: 314 LASHPNIDDFSFQWL---KYLEYLNMDDNNIPSTKSNTFT-GLVSLKYLSLS--KTFTSL 367
Query: 561 PDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSMRLQV 620
             L +                                    GT S           +L++
Sbjct: 368 QTLTNET----------FVSLAHSPLLTLNLTKNHISKIANGTFSWL--------GQLRI 409
Query: 621 LNLGNNTLSGEIP-DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK 679
           L+LG N +  ++    W     +F ++L  N +     +S   + SLQ L LR       
Sbjct: 410 LDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR------ 463
Query: 680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL 739
             V+L+N       DIS + F           L  + +L L  N         L GL +L
Sbjct: 464 --VALKNV------DISPSPF---------RPLRNLTILDLSNNNIANINEDLLEGLENL 506
Query: 740 KILDLSSNNLTGVIPRC-----INNLAGMA 764
           +ILD   NNL  +  R      +N L G++
Sbjct: 507 EILDFQHNNLARLWKRANPGGPVNFLKGLS 536

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS 311
           L +  N+  D S + +   L NL +L L+ N  Q          T+L+ L L  N   S 
Sbjct: 68  LALGGNKLHDISALKE---LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 312 VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLR 371
               F+K  +L YL L +N+LQ    G    LT++  LDL  N+L+S     F +L  L+
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLK 184
Query: 372 SVNLSGNKLSQEISQVLDMFSA 393
            ++L+ N+L      V D  ++
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTS 206

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 275 VFLDLSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
            +LDL TN+ + ++P+ + +  TSL  L L  N   S     FNK   L YL+LS N+LQ
Sbjct: 31  TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 334 GSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
               G    LT +K L L+ N+L+S     F +L  L+ + L  N+L      V D  ++
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 44/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L++L  + FS   L  I+PL   N + LV + +++NQ AD   +  +  L NL  L L  
Sbjct: 66  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 120
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N       D ++N T+L  L+LS N  S       +    L+ LS   N++    P  L 
Sbjct: 121 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LA 173
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           NLT+++ LD+S N++ S I     +L +L S+  + N++S       D+        L+ 
Sbjct: 174 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 224
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
           L L+ N L  + T  + +  NL  LDL+ N IS   PLS L +L+ L+            
Sbjct: 225 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 270
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
           L  N  +N++ L G  A  N  + +      +P   L+ +   + +   I    P   L+
Sbjct: 271 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 330
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
           +   ++   +N+ +SD      + +L+ IN+L+  +NQI    P
Sbjct: 331 KLQRLFF--ANNKVSDV---SSLANLTNINWLSAGHNQISDLTP 369

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 110/252 (43%), Gaps = 14/252 (5%)
Query: 257 NQFADSSIVNQVLGLV------NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS 310
           NQF+    V + L  V      N   L+L  N  Q    ++ ++   L+ L LSRNH  +
Sbjct: 43  NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 311 SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHL 370
                FN   +L  L L  N L     G+   L+ +K L L  N +ES    AF R+  L
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162
Query: 371 RSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSF 430
           R ++L   K    IS+    F   ++    +L + N      LT  I     LD LDLS 
Sbjct: 163 RRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLREIPNLTPLI----KLDELDLSG 216
Query: 431 NNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPS 490
           N++S   P S   L  L+ L +  + +   +  N F NL  LV  + + N+L L +    
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL-LPHDL 274
Query: 491 WTPPFQLQAIGL 502
           +TP   L+ I L
Sbjct: 275 FTPLHHLERIHL 286

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 44/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L++L  + FS   L  I+PL   N + LV + +++NQ AD   +  +  L NL  L L  
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N       D ++N T+L  L+LS N  S       +    L+ L+   N++    P  L 
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LA 169
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           NLT+++ LD+S N++ S I     +L +L S+  + N++S       D+        L+ 
Sbjct: 170 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 220
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
           L L+ N L  + T  + +  NL  LDL+ N IS   PLS L +L+ L+            
Sbjct: 221 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 266
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
           L  N  +N++ L G  A  N  + +      +P   L+ +   + +   I    P   L+
Sbjct: 267 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
           +   ++   SN+ +SD      + +L+ IN+L+  +NQI    P
Sbjct: 327 KLQRLFF--SNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 365

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 157/344 (45%), Gaps = 44/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L++L  + FS   L  I+PL   N + LV + +++NQ AD   +  +  L NL  L L  
Sbjct: 67  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 121
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N       D ++N T+L  L+LS N  S       +    L+ LS   N++    P  L 
Sbjct: 122 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LA 174
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           NLT+++ LD+S N++ S I     +L +L S+  + N++S       D+        L+ 
Sbjct: 175 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 225
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
           L L+ N L  + T  + +  NL  LDL+ N IS   PLS L +L+ L+            
Sbjct: 226 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 271
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
           L  N  +N++ L G  A  N  + +      +P   L+ +   + +   I    P   L+
Sbjct: 272 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 331
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
           +   ++    N+ +SD      + +L+ IN+L+  +NQI    P
Sbjct: 332 KLQRLFF--YNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 370

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 33/231 (14%)
Query: 269 LGLVNLVFLDLSTN--NFQGAVPDAIQNSTSLQHLDLSRN-------------------- 306
           + L +L FLDLS N  +F+G    +   +TSL++LDLS N                    
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 307 -HFSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL-ESKIP 361
            H +      F+ F+ L    YL +S+   + +  G    L+S++ L ++ N   E+ +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 362 RAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK 421
             F  LR+L  ++LS  +L Q      +  S+     L+ L++S+N  F L T       
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-----LQVLNMSHNNFFSLDTFPYKCLN 518
Query: 422 NLDSLDLSFNNISGHIPLSLGQL-SSLRYLDVSTNNLNGTLSENHFANLTK 471
           +L  LD S N+I       L    SSL +L+++ N+   T     F    K
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 45/219 (20%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L SL+ L F G  +  + PL  AN ++L  LDIS N+ +D S++ ++             
Sbjct: 150 LTSLQQLNF-GNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKL------------- 193
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
                         T+L+ L  + N  S   P       +L+ LSL+ N+L+    G+L 
Sbjct: 194 --------------TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA 235
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           +LT++  LDL+ N++ +  P     L  L  + L  N++S       ++        L +
Sbjct: 236 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-------NISPLAGLTALTN 286
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440
           L+L+ N L  +  + I N KNL  L L FNNIS   P+S
Sbjct: 287 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVS 323

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 44/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L++L  + FS   L  I+PL   N + LV + +++NQ AD   +  +  L NL  L L  
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N       D ++N T+L  L+LS N  S       +    L+ L+   N++    P  L 
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LA 169
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           NLT+++ LD+S N++ S I     +L +L S+  + N++S       D+        L+ 
Sbjct: 170 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 220
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
           L L+ N L  + T  + +  NL  LDL+ N IS   PLS L +L+ L+            
Sbjct: 221 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 266
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
           L  N  +N++ L G  A  N  + +      +P   L+ +   + +   I    P   L+
Sbjct: 267 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
           +   ++    N+ +SD      + +L+ IN+L+  +NQI    P
Sbjct: 327 KLQRLFF--YNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 365

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 168 NLSNLQFLDLRPN---YLGGLYVEDFGWVXXXXXXXXXXXXGVDLSKTSDGPLITN--SL 222
           +L +L+FLDL  N   + G     DFG               +DLS      + +N   L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY---------LDLSFNGVITMSSNFLGL 395
Query: 223 HSLETLRFSGCLLHHISPLS-FANFSSLVTLDISDN--QFADSSIVNQVLGLVNLVFLDL 279
             LE L F    L  +S  S F +  +L+ LDIS    + A + I N   GL +L  L +
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKM 452
Query: 280 STNNFQ-GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPG 338
           + N+FQ   +PD      +L  LDLS+       P  FN    L+ L+++ N+L+    G
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 339 SLGNLTSIKSLDLSFNRLESKIPR 362
               LTS++ + L  N  +   PR
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCSCPR 536

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 9/168 (5%)
Query: 228 LRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGA 287
           L F GC     S   F   +SL  LD+S N     ++ +  LGL  L  LD   +N +  
Sbjct: 359 LSFKGC----CSQSDFGT-TSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 288 VPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS-IPGSLGNLTS 345
              ++  S  +L +LD+S  H   +    FN    LE L ++ N  Q + +P     L +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
           +  LDLS  +LE   P AF  L  L+ +N++ N+L      + D  ++
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 28/244 (11%)
Query: 241 LSFANFSSLVTLDISDNQFADSSIVNQV-LGLVNLVFLDLSTN-------NFQGAVPDAI 292
            S  +  SL  LD+S N  +     +Q   G ++L +LDLS N       NF G      
Sbjct: 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL----- 419
Query: 293 QNSTSLQHLDLSRNHFSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSL 349
                L+HLD   ++        F+ F+ L    YL +S+   + +  G    L+S++ L
Sbjct: 420 ---EQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474
Query: 350 DLSFNRL-ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNT 408
            ++ N   E+ +P  F  LR+L  ++LS  +L Q      +  S+     L+ L++S+N 
Sbjct: 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-----LQVLNMSHNN 529
Query: 409 LFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQL-SSLRYLDVSTNNLNGTLSENHFA 467
            F L T       +L  LD S N+I       L    SSL +L+++ N+   T     F 
Sbjct: 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 589
Query: 468 NLTK 471
              K
Sbjct: 590 QWIK 593

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Query: 226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
           E L      L  +S  +F   + L  L++  NQ    S       L  L  L L+ N   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLA 96
Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
                   + T L  L L  N   S     F++   L+ L L+ N+LQ    G+   LT+
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
           +++L LS N+L+S    AF RL  L+++ L GN+      ++L
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           +VP  I   T  + LDL     ++     F     L +L+L YN+LQ    G   +LT +
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
            +L L+ N+L S     F  L  L  + L GN+L    S V D  +      L+ L L+ 
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-----LKELRLNT 140
Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNI 433
           N L  +         NL +L LS N +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQL 167

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%)
Query: 270 GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
           GL  L +L+L  N  Q        + T L  L L+ N  +S     F+    L+ L L  
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 330 NELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
           N+L+    G    LT +K L L+ N+L+S    AF +L +L++++LS N+L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           +VP  I   T  + LDL     ++     F     L +L+L YN+LQ    G   +LT +
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
            +L L+ N+L S     F  L  L  + L GN+L    S V D  +      L+ L L+ 
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-----LKELRLNT 140
Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNI 433
           N L  +         NL +L LS N +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQL 167

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 136/324 (41%), Gaps = 40/324 (12%)
Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSV--PDWFNKFIDLEYLSLS 328
           L NL  LDL ++      PDA Q    L  L L     S +V    +F     L  L LS
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131
Query: 329 YNELQG-SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRL--RHLRSVNLSGNKLSQEIS 385
            N+++   +  S G L S+KS+D S N++        + L  + L   +L+ N L   +S
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 386 ----QVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL 441
               + ++ F    + VLE LD+S N   G   +  GNF N  S   +F+ I  H  +  
Sbjct: 192 VDWGKCMNPFR---NMVLEILDVSGN---GWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 442 G-----------------QLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVL 484
           G                   SS+R+LD+S +    +L+   F  L  L   + + N  + 
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLS-HGFVFSLNSRVFETLKDLKVLNLAYNK-IN 303
Query: 485 KVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLS 544
           K+   ++     LQ + LS   +G  +         + Y+DL  + I+  I D+  K L 
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLE 362
Query: 545 QINYLNLSYNQI-----FGQIPDL 563
           ++  L+L  N +        IPD+
Sbjct: 363 KLQTLDLRDNALTTIHFIPSIPDI 386

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 158/330 (47%), Gaps = 50/330 (15%)
Query: 248 SLVTLDISDNQFAD-SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRN 306
           S+ +L++ +++F+D SS   Q      L  LDL+  + +G +P  ++    L+ L LS N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCF--TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVN 308
Query: 307 HFSSSVPDWFNKFIDLEYLSLSYNELQGSIP------GSLGNLTSIKSLDLSFNRLESK- 359
           HF     D   +     + SL++  ++G++       G L  L ++++LDLS N +E+  
Sbjct: 309 HF-----DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASD 363
Query: 360 -IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL-FGLLTNQI 417
                 K L HL+++NLS N+     SQ    F  C    LE LDL+   L      +  
Sbjct: 364 CCSLQLKNLSHLQTLNLSHNEPLGLQSQA---FKECPQ--LELLDLAFTRLHINAPQSPF 418
Query: 418 GNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL-NGTLSENHFANLTKLVG-- 474
            N   L  L+L++  +       L  L  LR+L++  N+  +GT+++    NL + VG  
Sbjct: 419 QNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITK---TNLLQTVGSL 475
Query: 475 ----FDASGNSLVLKVVSPSWTPPFQLQAIGLS----SCFIGPQFPQWLLSQNHL--IYL 524
                 + G   +L +   ++    ++  + LS    +C         + S +HL  IYL
Sbjct: 476 EVLILSSCG---LLSIDQQAFHSLGKMSHVDLSHNSLTC-------DSIDSLSHLKGIYL 525
Query: 525 DLSNSSISDTIPDRLVKSLSQINYLNLSYN 554
           +L+ +SI + I  RL+  LSQ + +NLS+N
Sbjct: 526 NLAANSI-NIISPRLLPILSQQSTINLSHN 554

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 15/214 (7%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLG-LVNLVFLDLS 280
           L  LE L+ S  L+  I   +F    SL TL++ DN+   +++  Q    L  L  L L 
Sbjct: 58  LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TTVPTQAFEYLSKLRELWLR 115
Query: 281 TNNFQGAVPDAIQNSTSLQHLD---LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
            N  +     A     SL+ LD   L R  + S     F   ++L YL+L    L+  IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA--FEGLVNLRYLNLGMCNLK-DIP 172
Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
            +L  L  ++ L+LS NRL+   P +F+ L  LR + L   +++       D   +    
Sbjct: 173 -NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS---- 227
Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFN 431
            LE L+LS+N L  L  +       L+ + L+ N
Sbjct: 228 -LEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD 302
           F     L  LD   +     S  +  L L NL++LD+S  + + A        +SL+ L 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156
Query: 303 LSRNHFSSS-VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361
           ++ N F  + +PD F +  +L +L LS  +L+   P +  +L+S++ L++S N   S   
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 362 RAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
             +K L  L+ ++ S N +     Q L  F
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 33/229 (14%)
Query: 271 LVNLVFLDLSTN--NFQGAVPDAIQNSTSLQHLDLSRN---------------------H 307
           L  L  L LS+N  +F+G    +   +TSL++LDLS N                     H
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110
Query: 308 FSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL-ESKIPRA 363
            +      F+ F+ L    YL +S+   + +  G    L+S++ L ++ N   E+ +P  
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNL 423
           F  LR+L  ++LS  +L Q      +  S+     L+ L++S+N  F L T       +L
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSS-----LQVLNMSHNNFFSLDTFPYKCLNSL 225
Query: 424 DSLDLSFNNISGHIPLSLGQL-SSLRYLDVSTNNLNGTLSENHFANLTK 471
             LD S N+I       L    SSL +L+++ N+   T     F    K
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 15/214 (7%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLG-LVNLVFLDLS 280
           L  LE L+ S  L+  I   +F    SL TL++ DN+   +++  Q    L  L  L L 
Sbjct: 58  LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TTVPTQAFEYLSKLRELWLR 115
Query: 281 TNNFQGAVPDAIQNSTSLQHLD---LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
            N  +     A     SL+ LD   L R  + S     F   ++L YL+L    L+  IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA--FEGLVNLRYLNLGMCNLK-DIP 172
Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
            +L  L  ++ L+LS NRL+   P +F+ L  LR + L   +++       D   +    
Sbjct: 173 -NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS---- 227
Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFN 431
            LE L+LS+N L  L  +       L+ + L+ N
Sbjct: 228 -LEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 8/231 (3%)
Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
           VN  +L+L  N+ Q    D  ++   L+ L LS+N         FN    L  L L  N 
Sbjct: 35  VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
           L      +   L+ ++ L L  N +ES    AF R+  LR ++L   K  + IS+    F
Sbjct: 95  LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEA--AF 152
Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD 451
               +    +L + N      LT  +     L+ L+LS N +    P S   L+SLR L 
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALV----RLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 452 VSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGL 502
           +    +  T+  N F +L  L   + S N+L + +    +TP  +L+ + L
Sbjct: 209 LMHAQV-ATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHL 257

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 90/228 (39%), Gaps = 11/228 (4%)
Query: 234 LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ 293
           +L  I   +F   + L  LD+SDN    S       GL  L  L L     Q   P   +
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSF 353
              +LQ+L L  N   +   D F    +L +L L  N +      +   L S+  L L  
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLL 413
           NR+    P AF+ L  L ++ L  N LS   ++ L    A     L+ L L++N      
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA-----LQYLRLNDNPWVC-- 239
Query: 414 TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD-VSTNNLNGT 460
                  + L +    F   S  +P SL Q  + R L  ++ N+L G 
Sbjct: 240 ---DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 90/228 (39%), Gaps = 11/228 (4%)
Query: 234 LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ 293
           +L  I   +F   + L  LD+SDN    S       GL  L  L L     Q   P   +
Sbjct: 66  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 125
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSF 353
              +LQ+L L  N   +   D F    +L +L L  N +      +   L S+  L L  
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 185
Query: 354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLL 413
           NR+    P AF+ L  L ++ L  N LS   ++ L    A     L+ L L++N      
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA-----LQYLRLNDNPWVC-- 238
Query: 414 TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD-VSTNNLNGT 460
                  + L +    F   S  +P SL Q  + R L  ++ N+L G 
Sbjct: 239 ---DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 283

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
           L+NL  L L +N   GA+P  + +S T L  LDL  N  +      F++ + L+ L +  
Sbjct: 63  LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121
Query: 330 NELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
           N+L   +P  +  LT +  L L  N+L+S    AF RL  L    L GN    E   ++
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 38/213 (17%)
Query: 263 SIVNQVLGLVNLVFLDLSTN--NFQGAVPDAIQNSTSLQHLDLSRN-------------- 306
           SI  + + L +L +LDLS N  +F G    +   + SL+HLDLS N              
Sbjct: 336 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 395
Query: 307 -------HFSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
                  H +      F+ F+ LE   YL +SY   +    G    LTS+ +L ++ N  
Sbjct: 396 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 455
Query: 357 -ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
            ++ +   F    +L  ++LS  +L Q    V D       + L+ L++S+N L  L ++
Sbjct: 456 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL-----HRLQLLNMSHNNLLFLDSS 510
Query: 416 QIGNFKNLDSLDLSFNNISG------HIPLSLG 442
                 +L +LD SFN I        H P SL 
Sbjct: 511 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 543

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 38/213 (17%)
Query: 263 SIVNQVLGLVNLVFLDLSTN--NFQGAVPDAIQNSTSLQHLDLSRN-------------- 306
           SI  + + L +L +LDLS N  +F G    +   + SL+HLDLS N              
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400
Query: 307 -------HFSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
                  H +      F+ F+ LE   YL +SY   +    G    LTS+ +L ++ N  
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 357 -ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
            ++ +   F    +L  ++LS  +L Q    V D       + L+ L++S+N L  L ++
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL-----HRLQLLNMSHNNLLFLDSS 515
Query: 416 QIGNFKNLDSLDLSFNNISG------HIPLSLG 442
                 +L +LD SFN I        H P SL 
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 117/270 (43%), Gaps = 26/270 (9%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           ++SL+ L  +      +  ++ A+F SL  L I  N          +  L NL  LDLS 
Sbjct: 299 MNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSH 358
Query: 282 NNFQGAVPDAIQ--NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS 339
           ++ + +    +Q  N   LQ+L+LS N         F +   LE L +++  L    P S
Sbjct: 359 SDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Query: 340 -LGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL---SQEISQVLDMFSACA 395
              NL  ++ L+LS   L++        L+ LR +NL GN     S   + +L M  +  
Sbjct: 419 PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE 478
Query: 396 SNVLES-------------------LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436
             +L S                   LDLS+N+L G   + + + K L  L+++ NNI   
Sbjct: 479 ILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRII 537
Query: 437 IPLSLGQLSSLRYLDVSTNNLNGTLSENHF 466
            P  L  LS    +++S N L+ T S  HF
Sbjct: 538 PPHLLPALSQQSIINLSHNPLDCTCSNIHF 567

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L+L R   +    D       L  L LS+N+LQ S+P     L ++  LD+SFNR
Sbjct: 55  TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S    A + L  L+ + L GN+L      +L       +  LE L L+NN L  L   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-----PTPKLEKLSLANNQLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
            +   +NLD+L L  N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L+L R   +    D       L  L LS+N+LQ S+P     L ++  LD+SFNR
Sbjct: 55  TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S    A + L  L+ + L GN+L      +L       +  LE L L+NN L  L   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-----PTPKLEKLSLANNQLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
            +   +NLD+L L  N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L+L R   +    D       L  L LS+N+LQ S+P     L ++  LD+SFNR
Sbjct: 55  TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S    A + L  L+ + L GN+L      +L       +  LE L L+NN L  L   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
            +   +NLD+L L  N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L+L R   +    D       L  L LS+N+LQ S+P     L ++  LD+SFNR
Sbjct: 55  TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S    A + L  L+ + L GN+L      +L       +  LE L L+NN L  L   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
            +   +NLD+L L  N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L+L R   +    D       L  L LS+N+LQ S+P     L ++  LD+SFNR
Sbjct: 55  TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S    A + L  L+ + L GN+L      +L       +  LE L L+NN L  L   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
            +   +NLD+L L  N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L+L R   +    D       L  L LS+N+LQ S+P     L ++  LD+SFNR
Sbjct: 56  TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 112
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S    A + L  L+ + L GN+L      +L       +  LE L L+NN L  L   
Sbjct: 113 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 167
Query: 416 QIGNFKNLDSLDLSFNNI 433
            +   +NLD+L L  N++
Sbjct: 168 LLNGLENLDTLLLQENSL 185

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L+L R   +    D       L  L LS+N+LQ S+P     L ++  LD+SFNR
Sbjct: 55  TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S    A + L  L+ + L GN+L      +L       +  LE L L+NN L  L   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNQLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
            +   +NLD+L L  N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L+L R   +    D       L  L LS+N+LQ S+P     L ++  LD+SFNR
Sbjct: 55  TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S    A + L  L+ + L GN+L      +L       +  LE L L+NN L  L   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNQLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
            +   +NLD+L L  N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L+L R   +    D       L  L LS+N+LQ S+P     L ++  LD+SFNR
Sbjct: 55  TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S    A + L  L+ + L GN+L      +L       +  LE L L+NN L  L   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
            +   +NLD+L L  N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384
           L LS+N+LQ S+P     L ++  LD+SFNRL S    A + L  L+ + L GN+L    
Sbjct: 82  LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNI 433
             +L       +  LE L L+NN L  L    +   +NLD+L L  N++
Sbjct: 141 PGLL-----TPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%)
Query: 254 ISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP 313
           ++DN+    S       L +LV L+L  N   G  P+A + ++ +Q L L  N       
Sbjct: 36  LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 314 DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
             F     L+ L+L  N++   +PGS  +L S+ SL+L+ N
Sbjct: 96  KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 13/232 (5%)
Query: 257 NQFADSSIVNQVLGLV------NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS 310
           NQF+      + L  V      N  +L+L  NN Q    D  ++   L+ L L RN    
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 311 SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHL 370
                FN    L  L L  N L     G+   L+ ++ L L  N +ES    AF R+  L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 371 RSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSF 430
             ++L   K  + IS+    F    +    +L + N      LT  +G    L+ L++S 
Sbjct: 174 MRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCNIKDMPNLTPLVG----LEELEMSG 227
Query: 431 NNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
           N+     P S   LSSL+ L V  N+    +  N F  L  LV  + + N+L
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNLAHNNL 278

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
            +VP  I  +T + HL +  N  +   P  F+    L YL+L+ N+L     G    LT 
Sbjct: 32  ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
           +  L L  N+L+S     F  L+ L  + L  N    E S +L
Sbjct: 90  LTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 128/298 (42%), Gaps = 36/298 (12%)
Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283
           S+E++        +IS  +F  FS L  LD++      S + + ++GL  L  L LS N 
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANK 312
Query: 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSV-PDWFNKFIDLEYLSLSYNELQGSIPGSLG- 341
           F+     +  N  SL HL +  N     +         +L  L LS+++++ S   +L  
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 342 -NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL----SQEISQVLDMFSACAS 396
            NL+ ++SL+LS+N   S    AFK    L  ++L+  +L    +Q   Q L +      
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-- 430
Query: 397 NVLES-LDLSNNTLFGLL--------------------TNQIGNFKNLDSLDLSFNNISG 435
           N+  S LD+S+  LF  L                    TN +     L+ L LSF ++S 
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490
Query: 436 HIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTP 493
               +   L  + ++D+S N L  +  E     L+ L G   +  S  + ++ PS  P
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIE----ALSHLKGIYLNLASNHISIILPSLLP 544

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	873
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-171
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-82
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-77
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-76
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-76
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-74
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-70
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-59
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-54
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-51
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-50
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-40
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-30
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-29
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-30
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-28
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  513 bits (1324), Expect = e-171
 Identities = 222/852 (26%), Positives = 335/852 (39%), Gaps = 154/852 (18%)

Query: 31  AAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRN 90
           + +  +  E   L+SFK  L D  N L  W++    + C + GV C +    V  + L +
Sbjct: 5   SPSQSLYREIHQLISFKDVLPDK-NLLPDWSSNK--NPCTFDGVTCRD--DKVTSIDLSS 59

Query: 91  PSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMY 150
                           +     ++ SLL L  L  L LS +   G  +  F     +L  
Sbjct: 60  KPL-------------NVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGF-KCSASLTS 104

Query: 151 LNISRAGFVGIIP--HQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVD 208
           L++SR    G +     +G+ S L+FL++  N L             L+ L+ LDLS   
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--PGKVSGGLKLNSLEVLDLSANS 162

Query: 209 LSKT-SDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQ 267
           +S     G ++++    L+ L  SG  +     +  +   +L  LD+S N F  S+ +  
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKIS--GDVDVSRCVNLEFLDVSSNNF--STGIPF 218

Query: 268 VLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSL 327
           +     L  LD+S N   G    AI   T L+ L++S N F   +P        L+YLSL
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276

Query: 328 SYNELQGSIPGSL-GNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQ 386
           + N+  G IP  L G   ++  LDLS N     +P  F     L S+ LS N  S E+  
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 387 VLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK-NLDSLDLSFNNISGHIPLSLGQ-- 443
             D         L+ LDLS N   G L   + N   +L +LDLS NN SG I  +L Q  
Sbjct: 337 --DTLLKMRG--LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 444 LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLS 503
            ++L+ L +  N   G +                                          
Sbjct: 393 KNTLQELYLQNNGFTGKI------------------------------------------ 410

Query: 504 SCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD- 562
                   P  L + + L+ L LS + +S TIP  L   LS++  L L  N + G+IP  
Sbjct: 411 --------PPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQE 461

Query: 563 LNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLN 622
           L     LETL L  N L+G +P                         + ++N   L  ++
Sbjct: 462 LMYVKTLETLILDFNDLTGEIP-------------------------SGLSNCTNLNWIS 496

Query: 623 LGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPV 682
           L NN L+GEIP        L  L L  N F+GN+P  LG   SL  L L  N F+G IP 
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 683 SLQNCTELRLFDISENEFVGNIPTWIGE-RLSGIILLSLRANQFHGFFPPELCGLASLKI 741
           ++   +      I+ N   G    +I    +      +    +F G    +L  L++   
Sbjct: 557 AMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 742 LDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDL 801
            +++S    G      +N                                    +  LD+
Sbjct: 613 CNITSRVYGGHTSPTFDNN---------------------------------GSMMFLDM 639

Query: 802 SANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKN 861
           S N  SG IP ++ ++  L  L L HN  SG IP  +G ++ +  LD SSN+L G IP+ 
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699

Query: 862 MVNLEFLEIFNI 873
           M  L  L   ++
Sbjct: 700 MSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  328 bits (843), Expect = e-100
 Identities = 170/613 (27%), Positives = 252/613 (41%), Gaps = 66/613 (10%)

Query: 108 KIVGKINPSLL---GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPH 164
            I G      +   G   L HL +S N   G  +   +    NL +L++S   F   IP 
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISG-DVD--VSRCVNLEFLDVSSNNFSTGIP- 217

Query: 165 QIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHS 224
            +G+ S LQ LD+  N L G   +    +S  + LK L++S         GP+    L S
Sbjct: 218 FLGDCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISSNQFV----GPIPPLPLKS 270

Query: 225 LETLRFSGCLLH-HISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283
           L+ L  +       I         +L  LD+S N F   ++         L  L LS+NN
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-GAVPPFFGSCSLLESLALSSNN 329

Query: 284 FQGAVP-DAIQNSTSLQHLDLSRNHFSSSVPDWF-NKFIDLEYLSLSYNELQGSIPGSLG 341
           F G +P D +     L+ LDLS N FS  +P+   N    L  L LS N   G I  +L 
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389

Query: 342 N--LTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVL 399
                +++ L L  N    KIP        L S++LS N LS  I   L   S      L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-----L 444

Query: 400 ESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNG 459
             L L  N L G +  ++   K L++L L FN+++G IP  L   ++L ++ +S N L G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 460 TLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN 519
            + +     L  L     S NS                        F G   P  L    
Sbjct: 505 EIPKW-IGRLENLAILKLSNNS------------------------FSGN-IPAELGDCR 538

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSN- 577
            LI+LDL+ +  + TIP  + K         ++ N I G+    + +    +    + N 
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQS-----GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593

Query: 578 -SLSGPLPL---IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP 633
               G         S+    +++S    G  S       +N+  +  L++  N LSG IP
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP----TFDNNGSMMFLDMSYNMLSGYIP 649

Query: 634 DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF 693
               +  +LF L+LG ND +G++P  +G L  L IL L  N+  G+IP ++   T L   
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709

Query: 694 DISENEFVGNIPT 706
           D+S N   G IP 
Sbjct: 710 DLSNNNLSGPIPE 722

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  313 bits (805), Expect = 1e-95
 Identities = 129/652 (19%), Positives = 223/652 (34%), Gaps = 66/652 (10%)

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRP 179
             ++  L+L++N  + +           L  L++       + P     L  L+ L+L+ 
Sbjct: 24  PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 180 NYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHIS 239
           N L  L  + F   +  + L  L L    + K  + P       +L TL  S   L    
Sbjct: 83  NELSQLSDKTF---AFCTNLTELHLMSNSIQKIKNNPF--VKQKNLITLDLSHNGLSSTK 137

Query: 240 PLSFANFSSLVTLDISDNQFAD-SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSL 298
             +     +L  L +S+N+     S    +    +L  L+LS+N  +   P        L
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

Query: 299 QHLDLSRNHFSSSVPDWFNKFID---LEYLSLSYNELQGSIPGSLGNL--TSIKSLDLSF 353
             L L+      S+ +     +    +  LSLS ++L  +   +   L  T++  LDLS+
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLL 413
           N L      +F  L  L    L  N +    S  L          +  L+L  +      
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN-----VRYLNLKRS------ 306

Query: 414 TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLV 473
                         +S  ++      S   L  L +L++  N++ G +  N F  L  L 
Sbjct: 307 ---------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLK 356

Query: 474 GFDASGNSLVLKVVSPSW---TPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSS 530
               S +   L+ ++           L  + L+   I            HL  LDL  + 
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 531 ISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-LNDAAQLETLDLSSNSLSGPLPLIP-- 587
           I   +  +  + L  I  + LSYN+      +       L+ L L   +L   +   P  
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSP 475

Query: 588 ----SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLF 643
                +LT LDLS+N ++      L         L++L+L +N L+              
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEK----LEILDLQHNNLA-------------- 517

Query: 644 FLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN 703
              L ++   G     L  LS L IL+L  N F        ++  EL++ D+  N     
Sbjct: 518 --RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 704 IPTWIGERLSGIILLSLRANQFHGFFPPELC-GLASLKILDLSSNNLTGVIP 754
             +        +  L+L+ N               +L  LD+  N       
Sbjct: 576 PASVFNN-QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  305 bits (784), Expect = 1e-92
 Identities = 143/729 (19%), Positives = 240/729 (32%), Gaps = 128/729 (17%)

Query: 147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           +  +L +++      +P  +   +N+  L+L  N L  L   +F   +  S L  LD+  
Sbjct: 10  DCSHLKLTQ------VPDDL--PTNITVLNLTHNQLRRLPAANF---TRYSQLTSLDVGF 58

Query: 207 VDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN 266
             +SK          L  L+ L      L  +S  +FA  ++L  L +  N        N
Sbjct: 59  NTISKLEPELC--QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNN 115

Query: 267 QVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKF--IDLEY 324
             +   NL+ LDLS N              +LQ L LS N   +   +  + F    L+ 
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFK---RLRHLRSVNLSGNKLS 381
           L LS N+++   PG    +  +  L L+  +L   +            +R+++LS ++LS
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 382 QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL 441
              +     F       L  LDLS N L  +  +       L+   L +NNI      SL
Sbjct: 236 TTSN---TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 442 GQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIG 501
             L ++RYL++  +    ++S      +                                
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKID------------------------------- 321

Query: 502 LSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
                              L +L++ ++ I   I   +   L  + YL+LS +    +  
Sbjct: 322 ----------DFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 562 DLND-----AAQLETLDLSSNSLSGPLPLIPS---SLTTLDLSSNFLSGTLSRFLCNEMN 613
                     + L  L+L+ N +S       S    L  LDL  N +   L+     E  
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG---QEWR 427

Query: 614 NSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTG--NLPTSLGTLSSLQILHL 671
               +  + L  N       + +     L  L L         + P+    L +L IL L
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 672 RGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPP 731
             N  +      L+   +L + D+  N                  L  L  +   G    
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNN-----------------LARLWKHANPGGPIY 530

Query: 732 ELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIG 791
            L GL+ L IL+L SN    +      +L                               
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDL------------------------------- 559

Query: 792 YPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMG-AMKSVEALDFS 850
             + LK++DL  N  +    S   N V L++L L  N  +       G A +++  LD  
Sbjct: 560 --FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 851 SNRLQGEIP 859
            N       
Sbjct: 618 FNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  302 bits (776), Expect = 2e-91
 Identities = 133/670 (19%), Positives = 220/670 (32%), Gaps = 78/670 (11%)

Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283
           S E    S   L  + P      +++  L+++ NQ               L  LD+  N 
Sbjct: 5   SHEVADCSHLKLTQV-PDDL--PTNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNT 60

Query: 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNL 343
                P+  Q    L+ L+L  N  S      F    +L  L L  N +Q          
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
            ++ +LDLS N L S       +L +L+ + LS NK+    S   +     A++ L+ L+
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS---EELDIFANSSLKKLE 177

Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLG---QLSSLRYLDVSTNNLNGT 460
           LS+N +             L  L L+   +   +   L      +S+R L +S + L+  
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST- 236

Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNH 520
            S   F  L                           L  + LS   +             
Sbjct: 237 TSNTTFLGL-----------------------KWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI-----FGQIPDLNDAA-----QLE 570
           L Y  L  ++I       L   L  + YLNL  +          +P ++D +      LE
Sbjct: 274 LEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 571 TLDLSSNSLSGPLPLIP---SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
            L++  N + G    +     +L  L LS++F S                L +LNL  N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 628 LSGEIPDCWMNWSFLFFLHLGENDFTGNLP-TSLGTLSSLQILHLRGNRFSGKIPVSLQN 686
           +S    D +     L  L LG N+    L       L ++  ++L  N++      S   
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 687 CTELRLFDISENEF--VGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDL 744
              L+   +       V + P+     L  + +L L  N         L GL  L+ILDL
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 745 SSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSAN 804
             NNL  +             + L                          +L +L+L +N
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLS-------------------------HLHILNLESN 546

Query: 805 YFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNM-V 863
            F         +L  L+ + L  N  +           S+++L+   N +     K    
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 864 NLEFLEIFNI 873
               L   ++
Sbjct: 607 AFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  277 bits (711), Expect = 3e-82
 Identities = 129/605 (21%), Positives = 226/605 (37%), Gaps = 73/605 (12%)

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
           + S +  D S     + VPD      ++  L+L++N+L+     +    + + SLD+ FN
Sbjct: 3   TVSHEVADCSHLKL-TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT 414
            +    P   ++L  L+ +NL  N+LSQ        F+ C +  L  L L +N++  +  
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSD---KTFAFCTN--LTELHLMSNSIQKIKN 114

Query: 415 NQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSEN-HFANLTKLV 473
           N     KNL +LDLS N +S     +  QL +L+ L +S N +    SE       + L 
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 474 GFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL---LSQNHLIYLDLSNSS 530
             + S N +  +     +    +L  + L++  +GP   + L   L+   +  L LSNS 
Sbjct: 175 KLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 531 ISDTIPDRLVK-SLSQINYLNLSYNQIFGQIPD-LNDAAQLETLDLSSNSLSGPLPLI-- 586
           +S T     +    + +  L+LSYN +     D      QLE   L  N++         
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 587 -PSSLTTLDLSSNFLSGTLSRFLCNEMNNSM-----RLQVLNLGNNTLSGEIPDCWMNWS 640
              ++  L+L  +F   ++S     ++++        L+ LN+ +N + G   + +    
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 641 FLFFLHLGENDFTGNLPTSLG----TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS 696
            L +L L  +  +    T+        S L IL+L  N+ S     +      L + D+ 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGV--IP 754
            NE    +       L  I  + L  N++          + SL+ L L    L  V   P
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 755 RCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV 814
                L                                   L +LDLS N  +      +
Sbjct: 474 SPFQPLR---------------------------------NLTILDLSNNNIANINDDML 500

Query: 815 TNLVGLQTLKLSHN--------FFSGRIPVNMGAMKSVEALDFSSNRLQGEIP---KNMV 863
             L  L+ L L HN           G     +  +  +  L+  SN          K++ 
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 864 NLEFL 868
            L+ +
Sbjct: 561 ELKII 565

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  261 bits (668), Expect = 3e-76
 Identities = 113/550 (20%), Positives = 201/550 (36%), Gaps = 48/550 (8%)

Query: 108 KIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRF-LGSLENLMYLNISRAGFVGIIPHQI 166
            +      + + L++L  L LS N  Q ++     + +  +L  L +S        P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 167 GNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLE 226
             +  L  L L    LG    E        + +++L LS   LS TS+   +     +L 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 227 TLRFSGCLLHHISPLSFANFSSLVTLDISDNQFA---DSSIVN----QVLGL-VNLVFLD 278
            L  S   L+ +   SFA    L    +  N        S+      + L L  +     
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS--I 336
           +S  +       + Q    L+HL++  N       + F   I+L+YLSLS +        
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 337 PGSLGNL--TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
             +  +L  + +  L+L+ N++      AF  L HL  ++L  N++ QE++     +   
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGL 429

Query: 395 ASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG--HIPLSLGQLSSLRYLDV 452
            +  +  + LS N    L  N      +L  L L    +      P     L +L  LD+
Sbjct: 430 EN--IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 453 STNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
           S NN+   ++++    L KL   D   N+L                   L          
Sbjct: 488 SNNNIAN-INDDMLEGLEKLEILDLQHNNLAR-----------------LWKHANPGGPI 529

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-LNDAAQLET 571
            +L   +HL  L+L ++     IP  + K L ++  ++L  N +        N+   L++
Sbjct: 530 YFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 572 LDLSSNSLSGP----LPLIPSSLTTLDLSSNFLSGT---LSRFLCNEMNNSMRLQVLNLG 624
           L+L  N ++            +LT LD+  N    T   ++ F+     N     +  L 
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV--NWINETHTNIPELS 646

Query: 625 NNTLSGEIPD 634
           ++ L    P 
Sbjct: 647 SHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (569), Expect = 2e-62
 Identities = 101/555 (18%), Positives = 189/555 (34%), Gaps = 72/555 (12%)

Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
            S +  D S  +L   +P       ++  +NL+ N+L +  +     +S      L SLD
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQ-----LTSLD 55

Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSE 463
           +  NT+  L          L  L+L  N +S     +    ++L  L + +N++   +  
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKN 114

Query: 464 NHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG--PQFPQWLLSQNHL 521
           N F     L+  D S N L       +      LQ + LS+  I         + + + L
Sbjct: 115 NPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 522 IYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAA----QLETLDLSSN 577
             L+LS++ I          ++ ++  L L+  Q+   + +          +  L LS++
Sbjct: 174 KKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 578 SLSGPLP-----LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEI 632
            LS         L  ++LT LDLS N L+   +           +L+   L  N +    
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA----WLPQLEYFFLEYNNIQHLF 288

Query: 633 PDCWMNWSFLFFLHLGENDFTGNL---------PTSLGTLSSLQILHLRGNRFSGKIPVS 683
                    + +L+L  +    ++           S   L  L+ L++  N   G     
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

Query: 684 LQNCTELRLFDISENEFVGNIP---TWIGERLSGIILLSLRANQFHGFFPPELCGLASLK 740
                 L+   +S +          T++    S + +L+L  N+           L  L+
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 741 ILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLD 800
           +LDL  N +   +        G+                                +  + 
Sbjct: 409 VLDLGLNEIGQELTG--QEWRGLEN------------------------------IFEIY 436

Query: 801 LSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG--RIPVNMGAMKSVEALDFSSNRLQGEI 858
           LS N +     +    +  LQ L L           P     ++++  LD S+N +    
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 859 PKNMVNLEFLEIFNI 873
              +  LE LEI ++
Sbjct: 497 DDMLEGLEKLEILDL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (443), Expect = 8e-46
 Identities = 83/368 (22%), Positives = 132/368 (35%), Gaps = 27/368 (7%)

Query: 104 YERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNIS--RAGFVGI 161
              + +    + S   LK L HL++  ND  GI        L NL YL++S        +
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 162 IPHQIGNL--SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLIT 219
                 +L  S L  L+L  N +  +  + F   S L  L+ LDL   ++ +   G    
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAF---SWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 220 NSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-SSIVNQVLGLVNLVFLD 278
             L ++  +  S      ++  SFA   SL  L +      +  S  +    L NL  LD
Sbjct: 428 G-LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS--------SVPDWFNKFIDLEYLSLSYN 330
           LS NN      D ++    L+ LDL  N+ +             +      L  L+L  N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 331 ELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDM 390
                      +L  +K +DL  N L +     F     L+S+NL  N ++    +V   
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV--- 603

Query: 391 FSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHI----PLSLGQLSS 446
           F     N L  LD+  N       +       ++    +   +S H     P        
Sbjct: 604 FGPAFRN-LTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHY-HGFP 661

Query: 447 LRYLDVST 454
           +R  D S+
Sbjct: 662 VRLFDTSS 669

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  276 bits (708), Expect = 1e-82
 Identities = 120/596 (20%), Positives = 196/596 (32%), Gaps = 73/596 (12%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           +   LDLS N  +     +  +   LQ LDLSR    +     +     L  L L+ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
           Q    G+   L+S++ L      L S        L+ L+ +N++ N +     ++ + FS
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFS 146

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFKNLD----SLDLSFNNISGHIPLSLGQLSSLR 448
              +  LE LDLS+N +  +    +     +     SLDLS N ++  I     +   L 
Sbjct: 147 NLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLH 203

Query: 449 YLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG 508
            L +  N  +  + +     L  L                        L+    S+    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF---------RNEGNLEKFDKSAL--- 251

Query: 509 PQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQ 568
                  + +  L YLD     I D         L+ ++  +L    I  ++ D +    
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLF-----NCLTNVSSFSLVSVTI-ERVKDFSYNFG 305

Query: 569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL 628
            + L+L +        L   SL  L  +SN      S        +   L+ L+L  N L
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGL 359

Query: 629 S--GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS-LQ 685
           S  G         + L +L L  N     + ++   L  L+ L  + +        S   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 686 NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPE-LCGLASLKILDL 744
           +   L   DIS               LS + +L +  N F   F P+    L +L  LDL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 745 SSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSAN 804
           S   L  + P   N+L+                                  L+VL++S N
Sbjct: 478 SQCQLEQLSPTAFNSLS---------------------------------SLQVLNMSHN 504

Query: 805 YFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM-KSVEALDFSSNRLQGEIP 859
            F          L  LQ L  S N         +     S+  L+ + N       
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  261 bits (668), Expect = 6e-77
 Identities = 128/623 (20%), Positives = 211/623 (33%), Gaps = 67/623 (10%)

Query: 246 FSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSR 305
             S   LD+S N                L  LDLS    Q     A Q+ + L  L L+ 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 306 NHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES-KIPRAF 364
           N   S     F+    L+ L      L       +G+L ++K L+++ N ++S K+P  F
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 365 KRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLD 424
             L +L  ++LS NK+       L +       +  SLDLS N +  +          L 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-PLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203

Query: 425 SLDLSFNNISGHIP-LSLGQLSSLRYLDVSTNNLNG-----TLSENHFANLTKLVG--FD 476
            L L  N  S ++    +  L+ L    +               ++    L  L    F 
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 477 ASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIP 536
            +     L  +   +     + +  L S  I               +L+L N       P
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFG-QFP 320

Query: 537 DRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSG-----PLPLIPSSLT 591
              +KSL ++ + +      F       D   LE LDLS N LS            +SL 
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 592 TLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP-DCWMNWSFLFFLHLGEN 650
            LDLS N +    S FL        +L+ L+  ++ L        +++   L +L +   
Sbjct: 377 YLDLSFNGVITMSSNFL-----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 651 DFTGNLPTSLGTLSSLQILHLRGNRFSGKI-PVSLQNCTELRLFDISENEFVGNIPTWIG 709
                       LSSL++L + GN F     P        L   D+S+ +     PT   
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 710 ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLE 769
             LS + +L++  N F          L SL++LD S N++     + + +          
Sbjct: 492 -SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--------- 541

Query: 770 VDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQ--VTNLVGLQTLKLSH 827
                                  P  L  L+L+ N F+     Q  +  +   + L +  
Sbjct: 542 -----------------------PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578

Query: 828 NFFSGRIPVNMGAMKSVEALDFS 850
                  P +      V +L+ +
Sbjct: 579 ERMECATPSDK-QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  259 bits (665), Expect = 2e-76
 Identities = 122/642 (19%), Positives = 204/642 (31%), Gaps = 88/642 (13%)

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
              +LDLS+N  + +       S   L  L++SR     I      +LS+L  L L  N 
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 182 LGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPL 241
           +  L +  F                               L SL+ L      L  +   
Sbjct: 88  IQSLALGAFSG-----------------------------LSSLQKLVAVETNLASLENF 118

Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ-- 299
              +  +L  L+++ N      +      L NL  LDLS+N  Q      ++    +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 300 --HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLS---- 352
              LDLS N  +   P  F K I L  L+L  N    ++    +  L  ++   L     
Sbjct: 179 NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 353 --FNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLF 410
                LE     A + L +L         L   +  ++D+F+   +  + S  L + T+ 
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN--VSSFSLVSVTIE 295

Query: 411 GLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLT 470
            +             L+L          L L  L  L +      N           +L 
Sbjct: 296 RV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA------FSEVDLP 347

Query: 471 KLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSS 530
            L   D S N L  K                           Q       L YLDLS + 
Sbjct: 348 SLEFLDLSRNGLSFK-----------------------GCCSQSDFGTTSLKYLDLSFNG 384

Query: 531 ISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLI-- 586
           +     + L   L Q+ +L+  ++ +              L  LD+S          I  
Sbjct: 385 VITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 587 -PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFL 645
             SSL  L ++ N           +       L  L+L    L    P  + + S L  L
Sbjct: 443 GLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 646 HLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC-TELRLFDISENEFVGNI 704
           ++  N+F          L+SLQ+L    N         LQ+  + L   ++++N+F    
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 705 P-TWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLS 745
                 + +     L +   +     P +  G+  +  L+++
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  259 bits (663), Expect = 4e-76
 Identities = 122/611 (19%), Positives = 206/611 (33%), Gaps = 64/611 (10%)

Query: 162 IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS 221
           IP  +    + + LDL  N L  L    F        L+ LDLS  ++    DG     S
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIEDGAY--QS 74

Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L  L TL  +G  +  ++  +F+  SSL  L   +   A S     +  L  L  L+++ 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAH 133

Query: 282 NNFQGA-VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEY----LSLSYNELQGSI 336
           N  Q   +P+   N T+L+HLDLS N   S           +      L LS N +    
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGNKLSQEISQV---LDMFS 392
           PG+   +  +  L L  N     + +   + L  L    L   +   E +          
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 393 ACASNVLESLDLSNNTLF-GLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD 451
              +  +E   L+    +   + +      N+ S  L    I      S       ++L+
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLE 310

Query: 452 VSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQF 511
           +               +L +L      G +                              
Sbjct: 311 LVNCKFGQ-FPTLKLKSLKRLTFTSNKGGN------------------------------ 339

Query: 512 PQWLLSQNHLIYLDLSNSSISDT-IPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLE 570
               +    L +LDLS + +S      +     + + YL+LS+N +     +     QLE
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 571 TLDLSSNSLSGPLPLIP----SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
            LD   ++L             +L  LD+S        +            L+VL +  N
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----LSSLEVLKMAGN 455

Query: 627 TLSGEI-PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQ 685
           +      PD +     L FL L +       PT+  +LSSLQ+L++  N F        +
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 686 NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPE--LCGLASLKILD 743
               L++ D S N  + +    +    S +  L+L  N F      +  L  +   + L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 744 LSSNNLTGVIP 754
           +    +    P
Sbjct: 576 VEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (541), Expect = 3e-59
 Identities = 106/547 (19%), Positives = 177/547 (32%), Gaps = 92/547 (16%)

Query: 108 KIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIG 167
            +    N  +  LK L  L++++N  Q  ++P +  +L NL +L++S      I    + 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 168 NLSNLQF----LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLH 223
            L  +      LDL  N +  +    F  +     L  L L     S           L 
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR----LHKLTLRNNFDSLNVM-KTCIQGLA 225

Query: 224 SLETLRFSGCLLH---HISPLSFANFSSLVTLDISDNQFA-----DSSIVNQVLGLVNLV 275
            LE  R          ++     +    L  L I + + A        I++    L N+ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
              L +   +         +   QHL+L    F                  L++   +G 
Sbjct: 286 SFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNKGG 338

Query: 336 IPGSLGNLTSIKSLDLSFNRLESK--IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
              S  +L S++ LDLS N L  K    ++      L+ ++LS N +    S     F  
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLG 394

Query: 394 CASNVLESLDLSNNTLFGLLTNQI-GNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDV 452
                LE LD  ++ L  +    +  + +NL  LD+S  +           LSSL  L +
Sbjct: 395 LEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 453 STNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
           + N+       + F  L                                           
Sbjct: 453 AGNSFQENFLPDIFTELR------------------------------------------ 470

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-LNDAAQLET 571
                  +L +LDLS   +    P     SLS +  LN+S+N  F            L+ 
Sbjct: 471 -------NLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 572 LDLSSNSLSGPLP----LIPSSLTTLDLSSNFLSGTLS-RFLCNEMNNSMRLQVLNLGNN 626
           LD S N +           PSSL  L+L+ N  + T   +     + +    + L +   
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD---QRQLLVEVE 579

Query: 627 TLSGEIP 633
            +    P
Sbjct: 580 RMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  177 bits (450), Expect = 4e-47
 Identities = 71/348 (20%), Positives = 132/348 (37%), Gaps = 20/348 (5%)

Query: 109 IVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGN 168
            +  I      L ++    L     + ++   +    ++L  +N     F      ++ +
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK---FGQFPTLKLKS 326

Query: 169 LSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETL 228
           L  L F   +                 L  L+ LDLS   LS             SL+ L
Sbjct: 327 LKRLTFTSNKGGNAFSE--------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 229 RFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAV 288
             S   +  +S  +F     L  LD   +     S  +  L L NL++LD+S  + + A 
Sbjct: 379 DLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 289 PDAIQNSTSLQHLDLSRNHFSSSV-PDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
                  +SL+ L ++ N F  +  PD F +  +L +L LS  +L+   P +  +L+S++
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 348 SLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407
            L++S N   S     +K L  L+ ++ S N +     Q         S+ L  L+L+ N
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE---LQHFPSS-LAFLNLTQN 553

Query: 408 TLFGLLTNQ--IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
                  +Q  +   K+   L +    +    P     +  +  L+++
Sbjct: 554 DFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 5e-14
 Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 30/198 (15%)

Query: 108 KIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIG 167
                 N    GL  L  L ++ N FQ   +P     L NL +L++S+     + P    
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLET 227
           +LS+LQ L++  N    L   D      L+ L+ LD S              N + + + 
Sbjct: 492 SLSSLQVLNMSHNNFFSL---DTFPYKCLNSLQVLDYSL-------------NHIMTSKK 535

Query: 228 LRFSGCLLHHISPLSFANFSSLVTLDISDNQFA-DSSIVNQVLGLVNLVFLDLSTNNFQG 286
                              SSL  L+++ N FA      + +  + +   L +     + 
Sbjct: 536 QELQHF------------PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 583

Query: 287 AVPDAIQNSTSLQHLDLS 304
           A P   Q    +  L+++
Sbjct: 584 ATPSDKQG-MPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 34/162 (20%)

Query: 713 SGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK 772
                L L  N               L++LDLS   +  +      +L+           
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS----------- 76

Query: 773 FFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG 832
                                 +L  L L+ N          + L  LQ L       + 
Sbjct: 77  ----------------------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 833 RIPVNMGAMKSVEALDFSSNRLQG-EIPKNMVNLEFLEIFNI 873
                +G +K+++ L+ + N +Q  ++P+   NL  LE  ++
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 789 PIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALD 848
           P   P+  K LDLS N           +   LQ L LS             ++  +  L 
Sbjct: 23  PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 849 FSSNRLQGEIP---KNMVNLEFLEIFN 872
            + N +Q         + +L+ L    
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVE 109

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  253 bits (648), Expect = 5e-74
 Identities = 108/584 (18%), Positives = 197/584 (33%), Gaps = 53/584 (9%)

Query: 299 QHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES 358
           +  +      +  +P         E L  S+N L      +   L ++  LDL+  ++  
Sbjct: 15  KTYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 359 KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG 418
                F+    L ++ L+ N L           S   +  L+ L      +  +    + 
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAE---TALSGPKA--LKHLFFIQTGISSIDFIPLH 126

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
           N K L+SL L  N+IS            L+ LD   N ++  LS+   ++L +      +
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLN 185

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL--LSQNHLIYLDLSNSSISDTIP 536
            N   +  + P        Q++            + L   +   L      +    D  P
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 537 DRLVK-SLSQINYLNLSYNQIFGQIPD-LNDAAQLETLDLSSNSLSGPLPLIP--SSLTT 592
                     +  +NL  +  F    +  +  + L+ LDL++  LS     +   S+L  
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKK 305

Query: 593 LDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM-NWSFLFFLHLGEND 651
           L LS+N              +N   L  L++  NT   E+    + N   L  L L  +D
Sbjct: 306 LVLSANKFENLCQISA----SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 652 FT--GNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIG 709
                     L  LS LQ L+L  N        + + C +L L D++             
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 710 ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLE 769
           + L  + +L+L  +           GL +L+ L+L  N+      +  N+L  + +    
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR---- 477

Query: 770 VDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNF 829
                                     L++L LS    S       T+L  +  + LSHN 
Sbjct: 478 --------------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 830 FSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
            +      +  +K +  L+ +SN +   +P  +  L      N+
Sbjct: 512 LTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  250 bits (640), Expect = 5e-73
 Identities = 123/619 (19%), Positives = 207/619 (33%), Gaps = 89/619 (14%)

Query: 147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           N   L ++       IP  +   ++ + L+   N L  +    F   S L  L  LDL+ 
Sbjct: 18  NCENLGLNE------IPGTL--PNSTECLEFSFNVLPTIQNTTF---SRLINLTFLDLTR 66

Query: 207 VDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN 266
             +    +      S H L+TL  +   L  ++  + +   +L  L         SSI  
Sbjct: 67  CQIYWIHEDTF--QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI--SSIDF 122

Query: 267 QVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLE-- 323
             L     L  L L +N+           +  L+ LD   N       +  +        
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 324 YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPR--AFKRLRHLRSVNLSGNKLS 381
            L+L+ N++   I     +    +SL+    +    I +      ++ L           
Sbjct: 183 SLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 382 QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL 441
                   +F       +ES++L  +  F + +N    F  L  LDL+  ++S  +P  L
Sbjct: 242 DISP---AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297

Query: 442 GQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIG 501
             LS+L+ L +S N     L +   +N   L      GN+  L++               
Sbjct: 298 VGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELG-------------- 342

Query: 502 LSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV-KSLSQINYLNLSYNQIFGQI 560
                        L +  +L  LDLS+  I  +    L  ++LS +  LNLSYN+     
Sbjct: 343 ----------TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 561 PD-LNDAAQLETLDLSSNSLSGPLPLIP----SSLTTLDLSSNFLSGTLSRFLCNEMNNS 615
            +   +  QLE LDL+   L       P      L  L+LS + L    S  L + +   
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPA- 450

Query: 616 MRLQVLNLGNNTLSGEIPDCW---MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLR 672
             LQ LNL  N                  L  L L   D +     +  +L  +  + L 
Sbjct: 451 --LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 673 GNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPE 732
            NR +     +L +   +                           L+L +N      P  
Sbjct: 509 HNRLTSSSIEALSHLKGIY--------------------------LNLASNHISIILPSL 542

Query: 733 LCGLASLKILDLSSNNLTG 751
           L  L+  + ++L  N L  
Sbjct: 543 LPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  247 bits (633), Expect = 6e-72
 Identities = 103/572 (18%), Positives = 176/572 (30%), Gaps = 56/572 (9%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           +   L+ S N              +L  LDL+R        D F     L+ L L+ N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
                 +L    ++K L      + S         + L S+ L  N +S      L    
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK---LPKGF 150

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFKNLD--SLDLSFNNISGHIPLSLGQLSSLRYL 450
                 L+ LD  NN +  L    + + +     SL+L+ N+I+  I       +  + L
Sbjct: 151 PTEK--LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSL 207

Query: 451 DVSTNNLNGT-LSENHFANLTKLVGFDASGNSLV-LKVVSPSWTPPFQLQAIGLSSCFIG 508
           +                + +  L            +            +++I L   +  
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 509 PQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-LNDAA 567
                     + L  LDL+ + +S  +P  L   LS +  L LS N+         ++  
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 568 QLETLDLSSNSLSGPLPLIP----SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNL 623
            L  L +  N+    L         +L  LDLS + +    S     ++ N   LQ LNL
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLSHLQSLNL 383

Query: 624 GNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTS-LGTLSSLQILHLRGNRFSGKIPV 682
             N       + +     L  L L           S    L  L++L+L  +        
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 683 SLQNCTELRLFDISENEFVGNIPTWIG--ERLSGIILLSLRANQFHGFFPPELCGLASLK 740
                  L+  ++  N F           + L  + +L L               L  + 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 741 ILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLD 800
            +DLS N LT      +++L                                      L+
Sbjct: 504 HVDLSHNRLTSSSIEALSHLK----------------------------------GIYLN 529

Query: 801 LSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG 832
           L++N+ S  +PS +  L   +T+ L  N    
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  244 bits (626), Expect = 5e-71
 Identities = 108/584 (18%), Positives = 195/584 (33%), Gaps = 37/584 (6%)

Query: 108 KIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIG 167
            +    N +   L +L  LDL+      I       S   L  L ++    + +    + 
Sbjct: 44  VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALS 102

Query: 168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLET 227
               L+ L      +  +         +   L+ L L    +S              L+ 
Sbjct: 103 GPKALKHLFFIQTGISSIDFIPLH---NQKTLESLYLGSNHISSIKLPKG--FPTEKLKV 157

Query: 228 LRFSGCLLHHISPLSFANFSSL--VTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
           L F    +H++S    ++      ++L+++ N    + I            L+       
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI--AGIEPGAFDSAVFQSLNFGGTQNL 215

Query: 286 GAVPDAIQNST--SLQHLDLSRNHFSSSVPDWFNKF--IDLEYLSLSYNELQGSIPGSLG 341
             +   ++NST  SL              P  F     + +E ++L  +        +  
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
             + ++ LDL+   L   +P     L  L+ + LS NK           F +     L  
Sbjct: 276 CFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-----LTH 329

Query: 402 LDLSNNTLFGLLT-NQIGNFKNLDSLDLSFNNI--SGHIPLSLGQLSSLRYLDVSTNNLN 458
           L +  NT    L    + N +NL  LDLS ++I  S    L L  LS L+ L++S N   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518
            +L    F    +L   D +   L +K     +     L+ + LS   +     Q     
Sbjct: 390 -SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 519 NHLIYLDLSNSSISDTIPDRL--VKSLSQINYLNLSYNQIFGQIPD-LNDAAQLETLDLS 575
             L +L+L  +        +   +++L ++  L LS+  +             +  +DLS
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 576 SNSLSG--PLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP 633
            N L+      L       L+L+SN +S  L     + +    + + +NL  N L     
Sbjct: 509 HNRLTSSSIEALSHLKGIYLNLASNHISIILP----SLLPILSQQRTINLRQNPLDC--- 561

Query: 634 DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
            C   + FL +             T       L+ + L     S
Sbjct: 562 TCSNIY-FLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 11/153 (7%)

Query: 107 SKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQI 166
            K   +   SL  L  L  L LS+ D   I       SL+ + ++++S           +
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 167 GNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLE 226
            +L  +  L+L  N++  +          LS  + ++L    L  T        +++ LE
Sbjct: 521 SHLKGIY-LNLASNHISIILPSLL---PILSQQRTINLRQNPLDCTCS------NIYFLE 570

Query: 227 TLRFSGCLLHHISPLSFANFSSLVTLDISDNQF 259
             + +   L         N   L  + +SD   
Sbjct: 571 WYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  249 bits (639), Expect = 1e-72
 Identities = 99/646 (15%), Positives = 188/646 (29%), Gaps = 113/646 (17%)

Query: 219 TNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLD 278
                +         +      +S  +   +  L +     +   + + +  L  L  L 
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGAS-GRVPDAIGQLTELEVLA 111

Query: 279 LSTNNFQG----AVPDAIQNSTSLQHLDLSRNHFSSSVPDW--FNKFIDLEYLSLSYNEL 332
           L ++  +       P  I  + S +     R H+  +  D+     F DL    ++ +  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
           Q SI  S         +    N +   + +A  RL  LR   +  +    E         
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA---- 226

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDV 452
                  E+ +      +     +  N K+L  +++        +P  L  L  ++ ++V
Sbjct: 227 ------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 453 STNNLNGTLSEN-------HFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSC 505
           + N                      K+       N+L                       
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL----------------------- 317

Query: 506 FIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDL-N 564
              P     L     L  L+   + +   +P     S  ++  LNL+YNQI     +   
Sbjct: 318 KTFP-VETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCG 374

Query: 565 DAAQLETLDLSSNSLSGPLPLIP-----SSLTTLDLSSNFLSGTLSRFLCN---EMNNSM 616
              Q+E L  + N L   +P I      S ++ +D S N +     +            +
Sbjct: 375 FTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 617 RLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTG-------NLPTSLGTLSSLQIL 669
            +  +NL NN +S    + +   S L  ++L  N  T        +   +      L  +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 670 HLRGNRFSGKIPVSLQ--NCTELRLFDISENEFVGNIPTWIG-----ERLSGIILLSLRA 722
            LR N+ +  +    +      L   D+S N F    PT        +          + 
Sbjct: 494 DLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 723 NQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYK 782
           N+    +P  +    SL  L + SN++  V  +   N                       
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN----------------------- 588

Query: 783 KKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN 828
                        + VLD+  N       S V   +      L ++
Sbjct: 589 -------------ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  246 bits (630), Expect = 2e-71
 Identities = 105/664 (15%), Positives = 211/664 (31%), Gaps = 131/664 (19%)

Query: 132 DFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFG 191
           D  G Q    L S   +  L++   G  G +P  IG L+ L+ L L  +           
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN------ 120

Query: 192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVT 251
               L   K +               +++       + +    + +       +FS L+ 
Sbjct: 121 --ERLFGPKGI------------SANMSDEQKQKMRMHYQKTFVDYDPRE---DFSDLIK 163

Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS 311
             I+ +     SI       +    +   +NN    V  A+   T L+   +  + F + 
Sbjct: 164 DCINSDPQQ-KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 312 VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLR 371
                      E  +  Y +   +      NL  +  +++      +K+P   K L  ++
Sbjct: 222 NI-----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 372 SVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFN 431
            +N++ N+                    E L      L           + +  + + +N
Sbjct: 277 LINVACNRGIS----------------GEQLKDDWQALA-----DAPVGEKIQIIYIGYN 315

Query: 432 NI-SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPS 490
           N+ +  +  SL ++  L  L+   N L G L    F +  KL   + + N +        
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQIT------- 366

Query: 491 WTPPFQLQAIGLSSCFIGPQFPQWLLSQ-NHLIYLDLSNSSISDTIPDRLVKSLSQINYL 549
                              + P         +  L  +++ +         KS+S ++ +
Sbjct: 367 -------------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 550 NLSYNQI-------FGQIP-DLNDAAQLETLDLSSNSLSGPLPLI---PSSLTTLDLSSN 598
           + SYN+I       F  +         + +++LS+N +S     +    S L++++L  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 599 FLSG---TLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM-NWSFLFFLHLGENDFTG 654
            L+       +       N+  L  ++L  N L+    D       +L  + L  N F+ 
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 655 NLPTSLGTLSSLQILHLR------GNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWI 708
             PT     S+L+   +R      GNR   + P  +  C  L    I  N          
Sbjct: 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN---------- 576

Query: 709 GERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVL 768
              +  +                ++    ++ +LD+  N    +    +         +L
Sbjct: 577 --DIRKV--------------NEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

Query: 769 EVDK 772
             DK
Sbjct: 619 FYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  234 bits (600), Expect = 4e-67
 Identities = 99/742 (13%), Positives = 211/742 (28%), Gaps = 178/742 (23%)

Query: 39  EREALLSFKQDLEDP--------SNRLASWNNIGVGDCCKWY---GVVCDNITGHVLELR 87
           +  AL      L           +   A+WN     +   W    GV  ++  G V  L 
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNF--NKELDMWGAQPGVSLNSN-GRVTGLS 87

Query: 88  LRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLEN 147
           L                      G++  ++  L  L  L L  +  +  +       +  
Sbjct: 88  LEG----------------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISA 131

Query: 148 LMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGV 207
            M     +   +      +       F DL  + +     +       +     + L   
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ-----KSIKKSSRITLKDT 186

Query: 208 DLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQ 267
            +        ++N++  +                +    + L    + ++ F   +I   
Sbjct: 187 QIG------QLSNNITFV--------------SKAVMRLTKLRQFYMGNSPFVAENI--- 223

Query: 268 VLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSL 327
                     +               N   L  +++      + +P +     +++ +++
Sbjct: 224 ---CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 328 SYNEL--------QGSIPGSLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLRSVNLSGN 378
           + N                       I+ + + +N L++  +  + ++++ L  +    N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 379 KLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438
           +L  ++      F +     L SL+L+ N +  +  N  G  + +++L  + N +   IP
Sbjct: 341 QLEGKL----PAFGSEIK--LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IP 393

Query: 439 --LSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQ 496
                  +S +  +D S N +   +   +F  L                           
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPL--------------------------- 425

Query: 497 LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
                                  ++  ++LSN+ IS   P  L  + S ++ +NL  N +
Sbjct: 426 ---------------DPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML 469

Query: 557 FGQIPDLNDAAQLETLDLSSNSLSGPLPLIP--SSLTTLDLSSNFLSGTLSRFLCNEMNN 614
                            +  NSL            LT++DL  N L+     F    +  
Sbjct: 470 TE---------------IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

Query: 615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLR-- 672
              L  ++L  N+ S                           PT     S+L+   +R  
Sbjct: 515 ---LVGIDLSYNSFSK-------------------------FPTQPLNSSTLKGFGIRNQ 546

Query: 673 ----GNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF 728
               GNR   + P  +  C  L    I  N+    +   I      I +L ++ N     
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI---TPNISVLDIKDNPNISI 602

Query: 729 FPPELCGLASLKILDLSSNNLT 750
               +C      +  L  +   
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  172 bits (437), Expect = 3e-45
 Identities = 60/476 (12%), Positives = 134/476 (28%), Gaps = 84/476 (17%)

Query: 416 QIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGF 475
            + +   +  L L     SG +P ++GQL+ L  L + ++             ++  +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM-- 133

Query: 476 DASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN--HLIYLDLSNSSISD 533
                                 +            F  +   ++   LI   +++     
Sbjct: 134 --------------------SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 534 TIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTL 593
           +I  +  +   +   +    N I      +    +L    + ++                
Sbjct: 174 SIK-KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

Query: 594 DLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFT 653
           + +  + +         + +N   L  + + N     ++P        +  +++  N   
Sbjct: 233 EYAQQYKT------EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 654 --------GNLPTSLGTLSSLQILHLRGNRF-SGKIPVSLQNCTELRLFDISENEFVGNI 704
                               +QI+++  N   +  +  SLQ   +L + +   N+  G +
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346

Query: 705 PTWIGERLSGIILLSLRANQFHGFFPPELCG-LASLKILDLSSNNLTGVIPRCINNLAGM 763
           P   G     +  L+L  NQ     P   CG    ++ L  + N L   IP   +     
Sbjct: 347 PA-FG-SEIKLASLNLAYNQITEI-PANFCGFTEQVENLSFAHNKLKY-IPNIFD----- 397

Query: 764 AKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG-------EIPSQVTN 816
                                           +  +D S N            +      
Sbjct: 398 --------------------------AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 817 LVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
            + + ++ LS+N  S            + +++   N L   IPKN +  E     N
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKN 486

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  151 bits (384), Expect = 2e-38
 Identities = 53/338 (15%), Positives = 105/338 (31%), Gaps = 41/338 (12%)

Query: 111 GKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLS 170
             +  SL  +K L  L+  YN  +G       GS   L  LN++      I  +  G   
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGK--LPAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 171 NLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLS-----GVDLSKTSDGPLITNSLHSL 225
            ++ L    N L  +   +      +S++  +D S      VD               ++
Sbjct: 378 QVENLSFAHNKLKYI--PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQF------ADSSIVNQVLGLVNLVFLDL 279
            ++  S   +       F+  S L ++++  N        +             L  +DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 280 STNNFQGAVPDAIQNS--TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSL------SYNE 331
             N     + D  + +    L  +DLS N FS   P        L+   +        N 
Sbjct: 496 RFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
                P  +    S+  L +  N +  K+        ++  +++  N         +   
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYV--- 607

Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLS 429
                            ++ L  ++  + +  D+LD+ 
Sbjct: 608 ----------CPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (366), Expect = 3e-36
 Identities = 61/480 (12%), Positives = 128/480 (26%), Gaps = 108/480 (22%)

Query: 400 ESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNG 459
           ++L+  N +  G  T    N+     LD+          +SL     +  L +     +G
Sbjct: 40  DALNGKNWSQQGFGTQPGANWNFNKELDMW----GAQPGVSLNSNGRVTGLSLEGFGASG 95

Query: 460 TLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN 519
            + +     LT+L       +                               P+ + +  
Sbjct: 96  RVPD-AIGQLTELEVLALGSHGE---------------------KVNERLFGPKGISANM 133

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSL 579
                         T  D       + ++ +L  +                   ++S+  
Sbjct: 134 SDEQKQKMRMHYQKTFVD----YDPREDFSDLIKD------------------CINSDPQ 171

Query: 580 SGPLP---LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW 636
              +     I    T +   SN ++      +   +    +L+   +GN+    E     
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-----VSKAVMRLTKLRQFYMGNSPFVAENIC-- 224

Query: 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS 696
                    +                L  L  + +       K+P  L+   E++L +++
Sbjct: 225 ---EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 697 ENEFV--------GNIPTWIGERLSGIILLSLRANQF-HGFFPPELCGLASLKILDLSSN 747
            N  +                     I ++ +  N          L  +  L +L+   N
Sbjct: 282 CNRGISGEQLKDDWQALADAP-VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS 807
            L G +P    +                                    L  L+L+ N  +
Sbjct: 341 QLEGKLP-AFGSEIK---------------------------------LASLNLAYNQIT 366

Query: 808 GEIPSQVTNLVGLQTLKLSHNFFSGRIP--VNMGAMKSVEALDFSSNRLQGEIPKNMVNL 865
               +       ++ L  +HN     IP   +  ++  + A+DFS N +     KN   L
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 7e-20
 Identities = 25/241 (10%), Positives = 65/241 (26%), Gaps = 44/241 (18%)

Query: 638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG----KIPVSLQNCTELRLF 693
           +   +  L L     +G +P ++G L+ L++L L  +          P  +         
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 694 DISENEFVGNIPTWIG-ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGV 752
                 +      +   E  S +I   + ++                  +   SNN+T  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 753 IPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPS 812
           + + +  L                                   L+   +  + F  E   
Sbjct: 198 VSKAVMRLT---------------------------------KLRQFYMGNSPFVAENIC 224

Query: 813 QVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
           +             +        +    +K +  ++  +     ++P  +  L  +++ N
Sbjct: 225 EAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 873 I 873
           +
Sbjct: 280 V 280

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  243 bits (622), Expect = 2e-70
 Identities = 113/590 (19%), Positives = 193/590 (32%), Gaps = 73/590 (12%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           +   +DLS N  +     +  N + LQ LDLSR    +     ++    L  L L+ N +
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
           Q   PGS   LTS+++L     +L S       +L  L+ +N++ N +     ++   FS
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS--CKLPAYFS 150

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFKNLD----SLDLSFNNISGHIPLSLGQLSSLR 448
              +  L  +DLS N +  +  N +   +       SLD+S N I   I     Q   L 
Sbjct: 151 NLTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLH 207

Query: 449 YLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG 508
            L +  N  +  + +    NL  L                        L+    S     
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF---------KDERNLEIFEPSIME-- 256

Query: 509 PQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQ 568
                  L    +    L+ ++       +    L+ ++ ++L+   I   + D+    +
Sbjct: 257 ------GLCDVTIDEFRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSIK-YLEDVPKHFK 308

Query: 569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL 628
            ++L +    L     L    L +L L+ N  S +  +           L  L+L  N L
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP------SLSYLDLSRNAL 362

Query: 629 SGEIPDCWMNWSF--LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS-LQ 685
           S      + +     L  L L  N     +  +   L  LQ L  + +        S   
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 686 NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPE-LCGLASLKILDL 744
           +  +L   DIS           I   L+ +  L +  N F             +L  LDL
Sbjct: 422 SLEKLLYLDISYTNT-KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 745 SSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSAN 804
           S   L  +     + L                                   L++L++S N
Sbjct: 481 SKCQLEQISWGVFDTLHR---------------------------------LQLLNMSHN 507

Query: 805 YFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854
                  S    L  L TL  S N       +     KS+   + ++N +
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  239 bits (611), Expect = 8e-69
 Identities = 118/596 (19%), Positives = 188/596 (31%), Gaps = 78/596 (13%)

Query: 246 FSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS 304
            SS   +D+S N      + +        L +LDLS    +     A      L +L L+
Sbjct: 31  PSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES-KIPRA 363
            N   S  P  F+    LE L     +L       +G L ++K L+++ N + S K+P  
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNL 423
           F  L +L  V+LS N +       L         V  SLD+S N +   + +Q      L
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLREN-PQVNLSLDMSLNPI-DFIQDQAFQGIKL 206

Query: 424 DSLDLSFNNISGHIP-LSLGQLSSLRYLDVSTNNLNG-----TLSENHFANLTKLVGFDA 477
             L L  N  S +I    L  L+ L    +                +    L  +     
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV----- 261

Query: 478 SGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPD 537
                              +    L+                ++  + L+  SI   + D
Sbjct: 262 ------------------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED 302

Query: 538 RLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLDLS 596
             V    +   L++   Q+  Q P L+    L++L L+ N  S     +   SL+ LDLS
Sbjct: 303 --VPKHFKWQSLSIIRCQL-KQFPTLDLP-FLKSLTLTMNKGSISFKKVALPSLSYLDLS 358

Query: 597 SNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNL 656
            N LS +      +   NS  L+ L+L  N     +   +M    L  L    +      
Sbjct: 359 RNALSFSGCCSYSDLGTNS--LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 657 PTS-LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI 715
             S   +L  L  L +                T L    ++ N F  N  + +    + +
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 716 ILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE 775
             L L   Q           L  L++L++S NNL  +     N L               
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS------------- 522

Query: 776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS 831
                               L  LD S N               L    L++N  +
Sbjct: 523 --------------------LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  237 bits (607), Expect = 2e-68
 Identities = 110/570 (19%), Positives = 191/570 (33%), Gaps = 45/570 (7%)

Query: 147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
             M   +S+      +P  I   S+ + +DL  N L  L    F   S+ S L+ LDLS 
Sbjct: 17  QCMDQKLSK------VPDDIP--SSTKNIDLSFNPLKILKSYSF---SNFSELQWLDLSR 65

Query: 207 VDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN 266
            ++    D     + LH L  L  +G  +   SP SF+  +SL  L   + + A S    
Sbjct: 66  CEIETIEDKAW--HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESF 122

Query: 267 QVLGLVNLVFLDLSTNNFQGA-VPDAIQNSTSLQHLDLSRNHFSSSVPDWF----NKFID 321
            +  L+ L  L+++ N      +P    N T+L H+DLS N+  +   +           
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGNKL 380
              L +S N +   I         +  L L  N   S I +   + L  L    L   + 
Sbjct: 183 NLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 381 SQEISQV---LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHI 437
             E +       +        ++   L+    F     +     N+ ++ L+  +I    
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-- 299

Query: 438 PLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQL 497
              + +    + L +    L     +    +L  L     + N   +   S        L
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLK----QFPTLDLPFLKSLTLTMNKGSI---SFKKVALPSL 352

Query: 498 QAIGLSSCFIG--PQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ 555
             + LS   +          L  N L +LDLS +     I       L ++ +L+  ++ 
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHST 410

Query: 556 IFGQIP--DLNDAAQLETLDLSSNSLSGPLPLI---PSSLTTLDLSSNFLSGTLSRFLCN 610
           +             +L  LD+S  +       I    +SL TL ++ N         +  
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 611 EMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILH 670
              N   L  L+L    L       +     L  L++  N+      +    L SL  L 
Sbjct: 471 NTTN---LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 671 LRGNRFSGKIPVSLQNCTELRLFDISENEF 700
              NR      +       L  F+++ N  
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  228 bits (583), Expect = 5e-65
 Identities = 110/577 (19%), Positives = 181/577 (31%), Gaps = 78/577 (13%)

Query: 113 INPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNL 172
            + S      L  LDLS  + + I   +    L +L  L ++        P     L++L
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 173 QFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSG 232
           + L      L  L     G    L  LK L+++   +         +N L +L  +  S 
Sbjct: 107 ENLVAVETKLASLESFPIG---QLITLKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSY 162

Query: 233 CLLHHISPLSFANFS----SLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAV 288
             +  I+              ++LD+S N      I +Q    + L  L L  N     +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 289 P-DAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLT--S 345
               +QN   L    L    F                       L+   P  +  L   +
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFK------------------DERNLEIFEPSIMEGLCDVT 262

Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS 405
           I    L++    S     F  L ++ +++L+G  +         +         +SL + 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-------LEDVPKHFKWQSLSII 315

Query: 406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENH 465
                 L      +   L SL L+ N  S  I      L SL YLD+S N L+       
Sbjct: 316 RC---QLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALS-FSGCCS 369

Query: 466 FANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLD 525
           +++L                           L+ + LS            +    L +LD
Sbjct: 370 YSDLGTN-----------------------SLRHLDLSFNGAI-IMSANFMGLEELQHLD 405

Query: 526 LSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-LNDAAQLETLDLSSNSLSGPLP 584
             +S++          SL ++ YL++SY                L TL ++ NS      
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 585 L----IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWS 640
                  ++LT LDLS   L            +   RLQ+LN+ +N L       +    
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVF----DTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 641 FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
            L  L    N    +         SL   +L  N  +
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  211 bits (540), Expect = 5e-59
 Identities = 107/538 (19%), Positives = 189/538 (35%), Gaps = 62/538 (11%)

Query: 108 KIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIG 167
           +I    + +  GL HL +L L+ N  Q    P     L +L  L         +    IG
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPL--ITNSLHSL 225
            L  L+ L++  N++    +  +   S+L+ L H+DLS   +   +   L  +  +    
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAY--FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
            +L  S   +  I   +F     L  L +  N  + + +   +  L  L    L    F+
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 286 GAVPDAIQN--------STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
                 I            ++    L+  +  S     F+   ++  +SL+   +     
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYL 300

Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
             +      +SL +   +L+         L+ L    L+ NK S           A  S 
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSI-----SFKKVALPS- 351

Query: 398 VLESLDLSNN--TLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
            L  LDLS N  +  G  +       +L  LDLSFN     +  +   L  L++LD   +
Sbjct: 352 -LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHS 409

Query: 456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
            L      + F +L KL+  D                         +S       F    
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLD-------------------------ISYTNTKIDFDGIF 444

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-LNDAAQLETLDL 574
           L    L  L ++ +S  D     +  + + + +L+LS  Q+        +   +L+ L++
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 575 SSNSLSGPLPLI---PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
           S N+L            SL+TLD S N +  +         +    L   NL NN+++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS----LAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  202 bits (517), Expect = 5e-56
 Identities = 102/589 (17%), Positives = 183/589 (31%), Gaps = 94/589 (15%)

Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
           G++   I+   ++          S  VPD        + + LS+N L+     S  N + 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLSK-VPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS 405
           ++ LDLS   +E+   +A+  L HL ++ L+GN +          FS   S  LE+L   
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP---GSFSGLTS--LENLVAV 112

Query: 406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISG-HIPLSLGQLSSLRYLDVSTNNLNGTLSEN 464
              L  L +  IG    L  L+++ N I    +P     L++L ++D+S N +   ++ N
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVN 171

Query: 465 HFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYL 524
               L +                      P    ++ +S   I             L  L
Sbjct: 172 DLQFLREN---------------------PQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209

Query: 525 DLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLP 584
            L  +  S  I    +++L+ ++   L   +   +              L     S    
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN------------LEIFEPSIMEG 257

Query: 585 LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF 644
           L   ++    L+                +    +  ++L   ++     +          
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKF----HCLANVSAMSLAGVSIKY--LEDVPKHFKWQS 311

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
           L +               L  L+ L L  N+ S  I         L   D+S N    + 
Sbjct: 312 LSIIRCQLKQF---PTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSG 366

Query: 705 P-TWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGM 763
             ++     + +  L L  N           GL  L+ LD   + L  V     +    +
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEF--SAFLSL 423

Query: 764 AKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTL 823
            K                              L  LD+S      +       L  L TL
Sbjct: 424 EK------------------------------LLYLDISYTNTKIDFDGIFLGLTSLNTL 453

Query: 824 KLSHNFFSGRIPVNM-GAMKSVEALDFSSNRLQGEIP---KNMVNLEFL 868
           K++ N F      N+     ++  LD S  +L+         +  L+ L
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  156 bits (397), Expect = 3e-40
 Identities = 60/305 (19%), Positives = 111/305 (36%), Gaps = 18/305 (5%)

Query: 106 RSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQ 165
            +            L ++  + L+    + ++        +    L+I R          
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ---SLSIIRCQLKQFPT-- 324

Query: 166 IGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSL 225
             +L  L+ L L  N     + +       L  L +LDLS   LS +          +SL
Sbjct: 325 -LDLPFLKSLTLTMNKGSISFKK-----VALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
             L  S      +S  +F     L  LD   +     +  +  L L  L++LD+S  N +
Sbjct: 379 RHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVP-DWFNKFIDLEYLSLSYNELQGSIPGSLGNLT 344
                     TSL  L ++ N F  +   + F    +L +L LS  +L+    G    L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 345 SIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDL 404
            ++ L++S N L       + +L  L +++ S N++      +     +     L   +L
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS-----LAFFNL 552

Query: 405 SNNTL 409
           +NN++
Sbjct: 553 TNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  151 bits (383), Expect = 2e-38
 Identities = 87/519 (16%), Positives = 156/519 (30%), Gaps = 73/519 (14%)

Query: 372 SVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFN 431
           +      KLS ++   +        +  +++DLS N L  L +    NF  L  LDLS  
Sbjct: 15  TYQCMDQKLS-KVPDDI-------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC 66

Query: 432 NISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSW 491
            I      +   L  L  L ++ N +    S   F+ LT L    A    L         
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKL--------- 116

Query: 492 TPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNL 551
                       +          +     L  L+++++ I          +L+ + +++L
Sbjct: 117 ------------ASLE----SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 552 SYNQIFGQIPDL-----NDAAQLETLDLSSNSLSG--PLPLIPSSLTTLDLSSNFLSGTL 604
           SYN I     +       +     +LD+S N +            L  L L  NF S  +
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 605 SRFLCNEMNNSMRLQVLNLGNNTLSGEI------PDCWMNWSFLFF--LHLGENDFTGNL 656
            +     +     L V  L       E       P        +      L   +   + 
Sbjct: 221 MKTCLQNLAG---LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 657 PTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGII 716
                 L+++  + L G          +    + +   I   +            L  + 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLD----LPFLK 331

Query: 717 LLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFED 776
            L+L  N+       +   L SL  LDLS N L+       ++L   +   L++      
Sbjct: 332 SLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF---- 385

Query: 777 ALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLVGLQTLKLSHNFFSGRIP 835
                   ++         L+ LD   +            +L  L  L +S+        
Sbjct: 386 ----NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 836 VNMGAMKSVEALDFSSNRLQGEIP----KNMVNLEFLEI 870
                + S+  L  + N  +         N  NL FL++
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (352), Expect = 1e-34
 Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 10/243 (4%)

Query: 118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPH--QIGNLSNLQFL 175
           L L  L  L L+ N      I     +L +L YL++SR                ++L+ L
Sbjct: 325 LDLPFLKSLTLTMNK---GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
           DL  N    +          L  L+HLD     L + ++     + L  L  L  S    
Sbjct: 382 DLSFNGAIIMS----ANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNT 436

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS 295
                  F   +SL TL ++ N F D+++ N      NL FLDLS    +          
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
             LQ L++S N+        +N+   L  L  S+N ++ S         S+   +L+ N 
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

Query: 356 LES 358
           +  
Sbjct: 557 VAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (264), Expect = 1e-23
 Identities = 55/358 (15%), Positives = 113/358 (31%), Gaps = 45/358 (12%)

Query: 522 IYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLS 580
           I     +  +S  +PD +    S    ++LS+N +        ++ ++L+ LDLS   + 
Sbjct: 14  ITYQCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 581 GPLPLIP------SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPD 634
               +          L+ L L+ N +            +    L+ L      L+     
Sbjct: 70  T---IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS----LENLVAVETKLASLESF 122

Query: 635 CWMNWSFLFFLHLGENDFTG-NLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF 693
                  L  L++  N      LP     L++L  + L  N         LQ   E    
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 694 DISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVI 753
           ++S                     L +  N    F   +      L  L L  N  +  I
Sbjct: 183 NLS---------------------LDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 754 PR-CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPS 812
            + C+ NLAG+    L + +F ++  +   +  +   +          L+      +   
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID-EFRLTYTNDFSDDIV 279

Query: 813 QVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEI 870
           +   L  +  + L+          ++      ++L     +L+     ++  L+ L +
Sbjct: 280 KFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL 335

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (250), Expect = 6e-22
 Identities = 55/312 (17%), Positives = 92/312 (29%), Gaps = 43/312 (13%)

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
           T       LS     IPSS   +DLS N L    S    N  +    LQ L+L    +  
Sbjct: 15  TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSN-FSE---LQWLDLSRCEIET 70

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690
                W     L  L L  N      P S   L+SL+ L     + +      +     L
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
           +  +++ N             +    L            P     L +L  +DLS N + 
Sbjct: 131 KKLNVAHN------------FIHSCKL------------PAYFSNLTNLVHVDLSYNYIQ 166

Query: 751 GVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEI 810
            +    +  L    +  L +D      + +     ++        L  L L  N+ S  I
Sbjct: 167 TITVNDLQFLRENPQVNLSLD------MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 811 PSQV-TNLVGLQTLKLSHNFFSGRIPVNMGAMK--------SVEALDFSSNRLQGEIPKN 861
                 NL GL   +L    F     + +            +++    +      +    
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 862 MVNLEFLEIFNI 873
              L  +   ++
Sbjct: 281 FHCLANVSAMSL 292

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 39/197 (19%)

Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
           G +   ++    +      + +    +P  I    S    + L  N             +
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 738 SLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLK 797
            L+ LDLS   +  +  +  + L                                 ++L 
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGL---------------------------------HHLS 83

Query: 798 VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG- 856
            L L+ N      P   + L  L+ L       +      +G + +++ L+ + N +   
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 857 EIPKNMVNLEFLEIFNI 873
           ++P    NL  L   ++
Sbjct: 144 KLPAYFSNLTNLVHVDL 160

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  232 bits (593), Expect = 1e-64
 Identities = 103/648 (15%), Positives = 203/648 (31%), Gaps = 121/648 (18%)

Query: 132 DFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFG 191
           D  G Q    L +   +  L+++  G  G +P  IG L+ L+ L    +           
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS------ 362

Query: 192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVT 251
               L   + L     +  K                      +  H   +       L  
Sbjct: 363 --GRLFGDEELTPDMSEERKHR--------------------IRMHYKKMFLDYDQRLNL 400

Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG------AVPDAIQNSTSLQHLDLSR 305
            D+  +         ++  +     + L              +  AIQ  T LQ +  + 
Sbjct: 401 SDLLQDAINR---NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 306 NHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFK 365
           + F+       N  +D E  +  Y +   +   S  NL  +  ++L      +++P    
Sbjct: 458 SPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 366 RLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDS 425
            L  L+S+N++ N+         D                       L +       +  
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTR--------------------LADDEDTGPKIQI 552

Query: 426 LDLSFNNISG-HIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVL 484
             + +NN+       SL ++  L  LD   N +   L    F    KL       N +  
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA--FGTNVKLTDLKLDYNQIE- 608

Query: 485 KVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ-NHLIYLDLSNSSISDTIPDRL-VKS 542
                                    + P+   +  + +  L  S++ +   IP+    KS
Sbjct: 609 -------------------------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642

Query: 543 LSQINYLNLSYNQIFGQIPDLNDA------AQLETLDLSSNSLSGPLPLIP---SSLTTL 593
           +  +  ++ SYN+I  +  +++ +          T+ LS N +      +    S ++T+
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 594 DLSSNFLSG---TLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM--NWSFLFFLHLG 648
            LS+N ++       +       N+  L  ++L  N L+  + D +      +L  + + 
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761

Query: 649 ENDFTGNLPTSLGTLSSLQILHLR------GNRFSGKIPVSLQNCTELRLFDISENEFVG 702
            N F+   PT     S L+   +R      GNR   + P  +  C  L    I  N+   
Sbjct: 762 YNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819

Query: 703 NIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
            +   +  +L    +L +  N         +C      +  L  +   
Sbjct: 820 KVDEKLTPQLY---ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  225 bits (576), Expect = 3e-62
 Identities = 87/562 (15%), Positives = 167/562 (29%), Gaps = 75/562 (13%)

Query: 233 CLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI 292
            +      +   N   +  L ++        + + +  L  L  L   T++   +     
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAK-GRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 293 QNSTSLQHLDLSRNHFSSSVPDWF------NKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
               +    +  ++         F          DL   +++ N     I          
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
             +    NR+   I +A +RL  L+ +  + +  + +   V            E  +   
Sbjct: 428 TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVD----------WEDANSDY 476

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSE--- 463
              +        N K+L  ++L        +P  L  L  L+ L+++ N           
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

Query: 464 -----NHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518
                +      K+  F    N+L     S S     +L  +      +  +  +   + 
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTN 594

Query: 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD---LNDAAQLETLDLS 575
             L  L L  + I   IP+       Q+  L  S+N++   IP+         + ++D S
Sbjct: 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFS 652

Query: 576 SNSLSGPLPLIPSS--------LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
            N +      I  S         +T+ LS N +    +            +  + L NN 
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA----TGSPISTIILSNNL 708

Query: 628 LS-------GEIPDCWMNWSFLFFLHLGENDFTGNLPTSL--GTLSSLQILHLRGNRFSG 678
           ++             + N   L  + L  N  T  L       TL  L  + +  N FS 
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 679 KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLAS 738
             P    N ++L+ F I                           N+    +P  +    S
Sbjct: 768 -FPTQPLNSSQLKAFGIRHQ-------------------RDAEGNRILRQWPTGITTCPS 807

Query: 739 LKILDLSSNNLTGVIPRCINNL 760
           L  L + SN++  V  +    L
Sbjct: 808 LIQLQIGSNDIRKVDEKLTPQL 829

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  223 bits (570), Expect = 1e-61
 Identities = 102/718 (14%), Positives = 201/718 (27%), Gaps = 149/718 (20%)

Query: 38  SEREALLSFKQDLEDPSNRLASWNNIGVG---------DCCKWYGVVCDNIT--GHVLEL 86
            + +AL +  + L+  + R  S                +   W      ++   G V  L
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328

Query: 87  RLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLE 146
            L                      G++  ++  L  L  L    +             L 
Sbjct: 329 SLAG----------------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
             M         +      +     L   DL  + +          +  +     + L  
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-----MKPIKKDSRISLKD 427

Query: 207 VDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN 266
             +        +TN +  +                +    + L  +  +++ F   +I  
Sbjct: 428 TQIG------NLTNRITFI--------------SKAIQRLTKLQIIYFANSPFTYDNI-- 465

Query: 267 QVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLS 326
                V+    +            +  N   L  ++L      + +PD+     +L+ L+
Sbjct: 466 ----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521

Query: 327 LSYNELQG---------SIPGSLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLRSVNLS 376
           ++ N              +         I+   + +N LE      + +++  L  ++  
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 377 GNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436
            NK+                  LE+                G    L  L L +N I   
Sbjct: 582 HNKVRH----------------LEA---------------FGTNVKLTDLKLDYNQIE-E 609

Query: 437 IPLSLGQ-LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPF 495
           IP         +  L  S N L    +  +  ++  +   D S N +             
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI-------GSEGRN 662

Query: 496 QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ 555
              ++                   +   + LS + I    P  L  + S I+ + LS N 
Sbjct: 663 ISCSMDDYKGI-------------NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL 708

Query: 556 IFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNS 615
           +   IP+ +   +      +              LTT+DL  N L+     F    +   
Sbjct: 709 M-TSIPENSLKPKDGNYKNTYL------------LTTIDLRFNKLTSLSDDFRATTLPY- 754

Query: 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE------NDFTGNLPTSLGTLSSLQIL 669
             L  +++  N  S   P   +N S L    +        N      PT + T  SL  L
Sbjct: 755 --LSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 670 HLRGNRFSGKIPVSLQNCTELRLFDISENEF-VGNIPTWIGERLSGIILLSLRANQFH 726
            +  N    K+   L    +L + DI++N     ++ +      +G+ +L     Q  
Sbjct: 812 QIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  170 bits (433), Expect = 5e-44
 Identities = 66/504 (13%), Positives = 140/504 (27%), Gaps = 80/504 (15%)

Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
           + +   +         + N   +  L L+     G +P ++GQL+ L+ L   T++   +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF------IGPQFPQW 514
                   LT  +  +   + + +           +L    L          + P     
Sbjct: 363 GRLFGDEELTPDM-SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 515 LLSQNHLIYLDLSN--SSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETL 572
            +S       +L+N  + IS  I     + L+++  +  + +        ++     E  
Sbjct: 422 RISLKDTQIGNLTNRITFISKAI-----QRLTKLQIIYFANSPFTYDNIAVD----WEDA 472

Query: 573 DLSSNSLSGPLPLIPS---SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
           +           L  S    LT ++L +      L  FL +       LQ LN+  N   
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE----LQSLNIACNRGI 528

Query: 630 G---------EIPDCWMNWSFLFFLHLGENDFTG-NLPTSLGTLSSLQILHLRGNRFSGK 679
                      + D       +   ++G N+        SL  +  L +L    N+    
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-H 587

Query: 680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPP-ELCGLAS 738
           +  +     +L    +  N+    IP         +  L    N+            +  
Sbjct: 588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 739 LKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKV 798
           +  +D S N +         ++                                      
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSM----------------------------DDYKGINAST 677

Query: 799 LDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS-------GRIPVNMGAMKSVEALDFSS 851
           + LS N               + T+ LS+N  +            N      +  +D   
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 852 NRLQGEIPK-----NMVNLEFLEI 870
           N+L   +        +  L  +++
Sbjct: 738 NKLT-SLSDDFRATTLPYLSNMDV 760

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.3 bits (237), Expect = 3e-20
 Identities = 38/320 (11%), Positives = 87/320 (27%), Gaps = 59/320 (18%)

Query: 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
           E LD  +                 + +              +++N+ R+  L+L      
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFNKELDM--WGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 630 GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIP-VSLQNCT 688
           G +PD     + L  L  G +  T +         +  +   R +R       + L    
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 689 ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFF------PPELCGLASLKIL 742
            L L D+ ++    N        +     +SL+  Q              +  L  L+I+
Sbjct: 397 RLNLSDLLQDAINRNPEMK---PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 743 DLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLS 802
             +++  T                                              +  +  
Sbjct: 454 YFANSPFTYDNI--------------------------------------AVDWEDANSD 475

Query: 803 ANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG------ 856
                       +NL  L  ++L +     ++P  +  +  +++L+ + NR         
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 857 ---EIPKNMVNLEFLEIFNI 873
               +  +      ++IF +
Sbjct: 536 DWTRLADDEDTGPKIQIFYM 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  216 bits (552), Expect = 3e-59
 Identities = 133/554 (24%), Positives = 213/554 (38%), Gaps = 43/554 (7%)

Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L++ E L  S   +  ++  SF     L  L++       +        L NL  LDL +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSV--PDWFNKFIDLEYLSLSYNELQG-SIPG 338
           +      PDA Q    L  L L     S +V    +F     L  L LS N+++   +  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 339 SLGNLTSIKSLDLSFNRLESKIPRAFKRLR--HLRSVNLSGNKLSQEISQV-LDMFSACA 395
           S G L S+KS+D S N++        + L+   L   +L+ N L   +S       +   
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 396 SNVLESLDLSNNTLFGLLTNQIGNF------------KNLDSLDLSFNNISGHIPLSLGQ 443
           + VLE LD+S N     +T    N              ++      F+NI      +   
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 444 L--SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIG 501
           L  SS+R+LD+S   +  +L+   F  L  L   + + N +  K+   ++     LQ + 
Sbjct: 263 LARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLN 320

Query: 502 LSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
           LS   +G  +         + Y+DL  + I+  I D+  K L ++  L+L  N     + 
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN----ALT 375

Query: 562 DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVL 621
            ++    +  + LS N L   LP I  +   + LS N L      +    + +   LQ+L
Sbjct: 376 TIHFIPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLENLDILYFLLRVPH---LQIL 431

Query: 622 NLGNNTLSGEIPDCWMNW-SFLFFLHLGENDFTGNLPTSL-----GTLSSLQILHLRGNR 675
            L  N  S    D   +    L  L LGEN       T L       LS LQ+L+L  N 
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

Query: 676 FSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCG 735
            +   P    + T LR   ++ N         +   L    +L +  NQ     P     
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLE---ILDISRNQLLAPNP---DV 545

Query: 736 LASLKILDLSSNNL 749
             SL +LD++ N  
Sbjct: 546 FVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  206 bits (525), Expect = 1e-55
 Identities = 138/660 (20%), Positives = 226/660 (34%), Gaps = 79/660 (11%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGII-PHQIGNLSNLQFLDL 177
            L     L LS+N  + +        LE L  L +        I      NL NL+ LDL
Sbjct: 22  VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 178 RPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHH 237
             + +  L          L  L  L L    LS          +L +L  L  S   +  
Sbjct: 81  GSSKIYFL---HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 238 ISP-LSFANFSSLVTLDISDNQFAD-SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS 295
           +    SF   +SL ++D S NQ         + L    L F  L+ N+    V       
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 296 ------TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSL 349
                   L+ LD+S N ++  +   F+            N +  S   SL     I   
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFS------------NAISKSQAFSLILAHHIMGA 245

Query: 350 DLSFNRLESKIPRAFKRLRH--LRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407
              F+ ++      F  L    +R ++LS       +  +         + L+ L+L+ N
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF----VFSLNSRVFETLKD-LKVLNLAYN 300

Query: 408 TLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFA 467
            +  +         NL  L+LS+N +      +   L  + Y+D+  N++   + +  F 
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFK 359

Query: 468 NLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLS 527
            L KL   D   N+                    L++    P  P   LS N L      
Sbjct: 360 FLEKLQTLDLRDNA--------------------LTTIHFIPSIPDIFLSGNKL------ 393

Query: 528 NSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGP----L 583
             ++        +  LS+    NL       ++P       L+ L L+ N  S       
Sbjct: 394 -VTLPKINLTANLIHLSENRLENLDILYFLLRVP------HLQILILNQNRFSSCSGDQT 446

Query: 584 PLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSM-RLQVLNLGNNTLSGEIPDCWMNWSFL 642
           P    SL  L L  N L       LC ++   +  LQVL L +N L+   P  + + + L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG 702
             L L  N  T      L   ++L+IL +  N+     P    +   L + DI+ N+F+ 
Sbjct: 507 RGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFIC 561

Query: 703 NIP--TWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNL 760
                T+I       + ++      +  +P    G+ SL  L     +   V+     +L
Sbjct: 562 ECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV-SLFSLSTEGCDEEEVLKSLKFSL 620

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  203 bits (519), Expect = 5e-55
 Identities = 127/615 (20%), Positives = 212/615 (34%), Gaps = 77/615 (12%)

Query: 126 LDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGL 185
               + +    Q+P+ L + E    L +S      +       L  LQ L+L   Y    
Sbjct: 9   AFYRFCNLT--QVPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--P 61

Query: 186 YVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHH--ISPLSF 243
              D     +L  L+ LDL    +            L  L  LR   C L    +    F
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF--QGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 244 ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN--STSLQHL 301
            N  +L  LD+S NQ     +      L +L  +D S+N         ++     +L   
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 302 DLSRNHFSSSVP-DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
            L+ N   S V  DW         + L   ++        GN  ++       N +    
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS-------GNGWTVDITGNFSNAISKSQ 232

Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNF 420
             +     H+       + +  +  Q  + F+  A + +  LDLS+  +F L +      
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK-DPDQ--NTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 421 KNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
           K+L  L+L++N I+     +   L +L+ L++S N L   L  ++F  L K+   D   N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKN 348

Query: 481 SLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV 540
            +                        I  Q  ++L     L  LDL +++++       +
Sbjct: 349 HIA----------------------IIQDQTFKFL---EKLQTLDLRDNALTT------I 377

Query: 541 KSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP----SSLTTLDLS 596
             +  I  + LS N++   +P +N       + LS N L     L        L  L L+
Sbjct: 378 HFIPSIPDIFLSGNKL-VTLPKIN--LTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 597 SNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSF-----LFFLHLGEND 651
            N  S        +E  +   L+ L LG N L            F     L  L+L  N 
Sbjct: 435 QNRFSSCSGDQTPSENPS---LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

Query: 652 FTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGER 711
                P     L++L+ L L  NR +      L     L + DIS N     +     + 
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN----QLLAPNPDV 545

Query: 712 LSGIILLSLRANQFH 726
              + +L +  N+F 
Sbjct: 546 FVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  199 bits (507), Expect = 2e-53
 Identities = 100/490 (20%), Positives = 180/490 (36%), Gaps = 51/490 (10%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLS--NLQ 173
               LK L  LDLS N  + + +    G L +L  ++ S      +  H++  L    L 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 174 FLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC 233
           F  L  N L         W   ++  +++ L  +D+S       IT +  +         
Sbjct: 178 FFSLAANSL--YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA-------- 227

Query: 234 LLHHISPLSFANFSSLVTLDISDNQFAD-SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI 292
            +      S      ++      +   D        L   ++  LDLS            
Sbjct: 228 -ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 293 QNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS 352
           +    L+ L+L+ N  +    + F    +L+ L+LSYN L      +   L  +  +DL 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 353 FNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGL 412
            N +     + FK L  L++++L  N L+                 +  + LS N L  L
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTI----------HFIPSIPDIFLSGNKLVTL 396

Query: 413 LTNQIGNFKNLDSLDLSFNNISG-HIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTK 471
               +      + + LS N +    I   L ++  L+ L ++ N  +    +   +    
Sbjct: 397 PKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452

Query: 472 LVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSI 531
           L       N L L   +      F+    GLS                HL  L L+++ +
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFE----GLS----------------HLQVLYLNHNYL 492

Query: 532 SDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLT 591
           + ++P  +   L+ +  L+L+ N++   +   +  A LE LD+S N L  P P +  SL+
Sbjct: 493 N-SLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550

Query: 592 TLDLSSNFLS 601
            LD++ N   
Sbjct: 551 VLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  167 bits (424), Expect = 6e-43
 Identities = 110/614 (17%), Positives = 199/614 (32%), Gaps = 135/614 (21%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
                 N    VP  +    + + L LS N+  +     F     L+ L L       +I
Sbjct: 9   AFYRFCNLT-QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 337 -PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
              +  NL +++ LDL  +++    P AF+ L HL  + L    LS              
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS-------------- 110

Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG-HIPLSLGQLSSLRYLDVST 454
                   L +     L        K L  LDLS N I   ++  S G+L+SL+ +D S+
Sbjct: 111 -----DAVLKDGYFRNL--------KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 455 NNLNGTLSENHFANLT--KLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
           N +   + E+    L    L  F  + NSL                    S   +     
Sbjct: 158 NQIF-LVCEHELEPLQGKTLSFFSLAANSL-------------------YSRVSVDWGKC 197

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETL 572
                   L  LD+S +  +  I      ++S+    +L                 +   
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH------------HIMGA 245

Query: 573 DLSSNSLSGP-----LPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
               +++  P       L  SS+  LDLS  F+  +L+  +   + +   L+VLNL  N 
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKD---LKVLNLAYNK 301

Query: 628 LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC 687
           ++    + +     L  L+L  N       ++   L  +  + L+ N  +     + +  
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 688 TELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
            +L+  D+ +N                                  +  + S+  + LS N
Sbjct: 362 EKLQTLDLRDNALT------------------------------TIHFIPSIPDIFLSGN 391

Query: 748 NLTGVIPRCIN----NLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSA 803
            L  +    +     +L+    E L++  F                     +L++L L+ 
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVP----------------HLQILILNQ 435

Query: 804 NYFSGEIPSQV-TNLVGLQTLKLSHNFFSGRIPVNMGA-----MKSVEALDFSSNRLQ-- 855
           N FS     Q  +    L+ L L  N         +       +  ++ L  + N L   
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 856 -GEIPKNMVNLEFL 868
              +  ++  L  L
Sbjct: 496 PPGVFSHLTALRGL 509

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (371), Expect = 2e-36
 Identities = 80/385 (20%), Positives = 134/385 (34%), Gaps = 38/385 (9%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRF-----------LGSLENLMYLNISRAGFVGIIP 163
            +      L  LD+S N +       F           L    ++M              
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 164 HQIGNL--SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS 221
           +    L  S+++ LDL   ++  L    F     L  LK L+L+   ++K +D       
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVF---ETLKDLKVLNLAYNKINKIADEAF--YG 312

Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLS 280
           L +L+ L  S  LL  +   +F     +  +D+  N    + I +Q    L  L  LDL 
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI--AIIQDQTFKFLEKLQTLDLR 370

Query: 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGS 339
            N         I    S+  + LS N   +              + LS N L+   I   
Sbjct: 371 DNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYF 421

Query: 340 LGNLTSIKSLDLSFNRLESKIPRA-FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV 398
           L  +  ++ L L+ NR  S            L  + L  N L       L        + 
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
           L+ L L++N L  L      +   L  L L+ N ++  +  +    ++L  LD+S N L 
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLL 539

Query: 459 GTLSENHFANLTKLVGFDASGNSLV 483
              + + F +L+     D + N  +
Sbjct: 540 -APNPDVFVSLSV---LDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (370), Expect = 3e-36
 Identities = 81/420 (19%), Positives = 151/420 (35%), Gaps = 33/420 (7%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLG-SLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
           SL+   H++     +++ +      F G +  ++ +L++S      +       L +L+ 
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL 234
           L+L  N +  +  E F     L  L+ L+LS   L +          L  +  +      
Sbjct: 295 LNLAYNKINKIADEAF---YGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNH 349

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
           +  I   +F     L TLD+ DN          +  + ++  + LS N         +  
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLVTLPKINL-- 401

Query: 295 STSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLS 352
             +   + LS N   +  +  +  +   L+ L L+ N     S   +     S++ L L 
Sbjct: 402 --TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 353 FNRLESKI-----PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407
            N L+           F+ L HL+ + L+ N L+  +     +FS   +  L  L L++N
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPP--GVFSHLTA--LRGLSLNSN 514

Query: 408 TLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFA 467
            L  L  N +    NL+ LD+S N +      +     SL  LD++ N        + F 
Sbjct: 515 RLTVLSHNDL--PANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECELSTFI 569

Query: 468 NLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLS 527
           N         +G    +  V P       L ++    C           S   +  + L+
Sbjct: 570 NWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLT 629

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (286), Expect = 4e-26
 Identities = 85/465 (18%), Positives = 139/465 (29%), Gaps = 127/465 (27%)

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
                + L LSFN I      S   L  L+ L++ +     T+ +  F NL  L   D  
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISD-TIPD 537
            +               ++  +           P       HL  L L    +SD  + D
Sbjct: 82  SS---------------KIYFLH----------PDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 538 RLVKSLSQINYLNLSYNQI--FGQIPDLNDAAQLETLDLSSNSLSGP-----LPLIPSSL 590
              ++L  +  L+LS NQI      P       L+++D SSN +         PL   +L
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 591 TTLDLSSNFLSGTLSRFLCNEMNN--SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLG 648
           +   L++N L   +S      MN   +M L++L++  N  + +I                
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG------------NF 224

Query: 649 ENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWI 708
            N  + +   SL     +       +                   D  +N F G   +  
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIK----------------DPDQNTFAGLARS-- 266

Query: 709 GERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVL 768
                                        S++ LDLS   +  +  R    L        
Sbjct: 267 -----------------------------SVRHLDLSHGFVFSLNSRVFETL-------- 289

Query: 769 EVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN 828
                                      LKVL+L+ N  +         L  LQ L LS+N
Sbjct: 290 -------------------------KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 829 FFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
                   N   +  V  +D   N +     +    LE L+  ++
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  197 bits (503), Expect = 5e-57
 Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 40/291 (13%)

Query: 587 PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE--IPDCWMNWSFLFF 644
           P++L++   +++  + T    LC+    + R+  L+L    L     IP    N  +L F
Sbjct: 21  PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80

Query: 645 LHL-GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN 703
           L++ G N+  G +P ++  L+ L  L++     SG IP  L     L   D S N   G 
Sbjct: 81  LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140

Query: 704 IPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL-KILDLSSNNLTGVIPRCINNLAG 762
           +P  I   L  ++ ++   N+  G  P      + L   + +S N LTG IP    NL  
Sbjct: 141 LPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198

Query: 763 MAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQT 822
                                            L  +DLS N   G+      +    Q 
Sbjct: 199 ---------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 823 LKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
           + L+ N  +  +   +G  K++  LD  +NR+ G +P+ +  L+FL   N+
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (497), Expect = 3e-56
 Identities = 68/309 (22%), Positives = 110/309 (35%), Gaps = 43/309 (13%)

Query: 570 ETLDLSSNSLSGPLP---LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGN- 625
            T D  + +  G L         +  LDLS   L       + + + N   L  L +G  
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--IPSSLANLPYLNFLYIGGI 86

Query: 626 NTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQ 685
           N L G IP      + L +L++   + +G +P  L  + +L  L    N  SG +P S+ 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 686 NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLS 745
           +   L       N   G IP   G        +++  N+  G  PP    L +L  +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205

Query: 746 SNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANY 805
            N L G       +                                     + + L+ N 
Sbjct: 206 RNMLEGDASVLFGSDKN---------------------------------TQKIHLAKNS 232

Query: 806 FSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPK--NMV 863
            + ++   V     L  L L +N   G +P  +  +K + +L+ S N L GEIP+  N+ 
Sbjct: 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 864 NLEFLEIFN 872
             +     N
Sbjct: 292 RFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  193 bits (492), Expect = 2e-55
 Identities = 88/349 (25%), Positives = 133/349 (38%), Gaps = 53/349 (15%)

Query: 35  CIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNIT--GHVLELRLRNPS 92
           C   +++ALL  K+DL +P+  L+SW          W GV+CD  T    V  L L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-L 60

Query: 93  RDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLS-YNDFQGIQIPRFLGSLENLMYL 151
                               I  SL  L +L  L +   N+  G  IP  +  L  L YL
Sbjct: 61  NLPKP-------------YPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYL 106

Query: 152 NISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSK 211
            I+     G IP  +  +  L  LD   N L G           L  L  +   G  +S 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS---SLPNLVGITFDGNRIS- 162

Query: 212 TSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVT-LDISDNQFADSSIVNQVLG 270
              G +                      P S+ +FS L T + IS N+   +  +     
Sbjct: 163 ---GAI----------------------PDSYGSFSKLFTSMTISRNRL--TGKIPPTFA 195

Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYN 330
            +NL F+DLS N  +G       +  + Q + L++N  +  +        +L  L L  N
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254

Query: 331 ELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK 379
            + G++P  L  L  + SL++SFN L  +IP+    L+       + NK
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  181 bits (463), Expect = 2e-51
 Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 11/256 (4%)

Query: 230 FSGCLLHHISPLSFANFSSLVTLDISDNQFA-DSSIVNQVLGLVNLVFLDLS-TNNFQGA 287
                   +   +      +  LD+S         I + +  L  L FL +   NN  G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 288 VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
           +P AI   T L +L ++  + S ++PD+ ++   L  L  SYN L G++P S+ +L ++ 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 348 SLDLSFNRLESKIPRAFKRLRHL-RSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
            +    NR+   IP ++     L  S+ +S N+L+ +I       +      L  +DLS 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------LAFVDLSR 206

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHF 466
           N L G  +   G+ KN   + L+ N+++  +   +G   +L  LD+  N + GTL +   
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG-L 264

Query: 467 ANLTKLVGFDASGNSL 482
             L  L   + S N+L
Sbjct: 265 TQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  179 bits (457), Expect = 1e-50
 Identities = 76/308 (24%), Positives = 126/308 (40%), Gaps = 38/308 (12%)

Query: 151 LNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLS 210
            +     ++G++         +  LDL    L          +++L  L  L + G    
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK-PYPIPSSLANLPYLNFLYIGG---- 85

Query: 211 KTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLG 270
                    N+L         G +     P + A  + L  L I+      S  +   L 
Sbjct: 86  --------INNL--------VGPI-----PPAIAKLTQLHYLYITHTNV--SGAIPDFLS 122

Query: 271 -LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDL-EYLSLS 328
            +  LV LD S N   G +P +I +  +L  +    N  S ++PD +  F  L   +++S
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 329 YNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
            N L G IP +  NL ++  +DLS N LE      F   ++ + ++L+ N L+ ++ +V 
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 389 DMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLR 448
              +      L  LDL NN ++G L   +   K L SL++SFNN+ G IP   G L    
Sbjct: 242 LSKN------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFD 294

Query: 449 YLDVSTNN 456
               + N 
Sbjct: 295 VSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  179 bits (457), Expect = 1e-50
 Identities = 78/259 (30%), Positives = 116/259 (44%), Gaps = 13/259 (5%)

Query: 219 TNSLHSLETLRFSGCLLH---HISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLV 275
               + +  L  SG  L     I   S AN   L  L I         I   +  L  L 
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
           +L ++  N  GA+PD +    +L  LD S N  S ++P   +   +L  ++   N + G+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 336 IPGSLGNLTS-IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
           IP S G+ +    S+ +S NRL  KIP  F  L +L  V+LS N L  + S    +F + 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS---VLFGSD 220

Query: 395 ASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVST 454
            +   + + L+ N+L   L  ++G  KNL+ LDL  N I G +P  L QL  L  L+VS 
Sbjct: 221 KN--TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 455 NNLNGTL-SENHFANLTKL 472
           NNL G +    +       
Sbjct: 278 NNLCGEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (420), Expect = 1e-45
 Identities = 71/296 (23%), Positives = 119/296 (40%), Gaps = 40/296 (13%)

Query: 399 LESLDLSNNTLFGLLT--NQIGNFKNLDSLDLS-FNNISGHIPLSLGQLSSLRYLDVSTN 455
           + +LDLS   L       + + N   L+ L +   NN+ G IP ++ +L+ L YL ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
           N++G + +   + +  LV  D S N+L                         G   P  +
Sbjct: 112 NVSGAIPDF-LSQIKTLVTLDFSYNALS------------------------GT-LPPSI 145

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLS 575
            S  +L+ +    + IS  IPD           + +S N++ G+IP       L  +DLS
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205

Query: 576 SNSLSGPLPLI---PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEI 632
            N L G   ++     +   + L+ N L+  L      ++  S  L  L+L NN + G +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGLDLRNNRIYGTL 260

Query: 633 PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT 688
           P       FL  L++  N+  G +P   G L    +     N+     P  L  CT
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP--LPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  102 bits (256), Expect = 7e-24
 Identities = 43/200 (21%), Positives = 67/200 (33%), Gaps = 41/200 (20%)

Query: 679 KIPVSLQNCTELR----LFDISENEFVGNIPTWIGERLSGIILLSLRANQFHG--FFPPE 732
           +I   L N T L       D     ++G +      +   +  L L           P  
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 733 LCGLASLKILDLSS-NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIG 791
           L  L  L  L +   NNL G IP  I  L                               
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLT------------------------------ 101

Query: 792 YPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSS 851
               L  L ++    SG IP  ++ +  L TL  S+N  SG +P ++ ++ ++  + F  
Sbjct: 102 ---QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 852 NRLQGEIPKNMVNLEFLEIF 871
           NR+ G IP +  +   L   
Sbjct: 159 NRISGAIPDSYGSFSKLFTS 178

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  204 bits (522), Expect = 6e-57
 Identities = 115/564 (20%), Positives = 192/564 (34%), Gaps = 72/564 (12%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           +   LDLS N  +     +  +   LQ LDLSR    +     +     L  L L+ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
           Q    G+   L+S++ L      L S        L+ L+ +N++ N +     ++ + FS
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFS 146

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFKNLD----SLDLSFNNISGHIPLSLGQLSSLR 448
              +  LE LDLS+N +  +    +     +     SLDLS N ++  I     +   L 
Sbjct: 147 NLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLH 203

Query: 449 YLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG 508
            L +  N  +  + +     L  L          V ++V   +     L+    S+   G
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGL---------EVHRLVLGEFRNEGNLEKFDKSA-LEG 253

Query: 509 PQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQ 568
                  L    +    L+           L   L+ ++  +L    I  ++ D +    
Sbjct: 254 -------LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFG 305

Query: 569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL 628
            + L+L +        L   SL  L  +SN      S            L+ L+L  N L
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP------SLEFLDLSRNGL 359

Query: 629 S--GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS-LQ 685
           S  G         + L +L L  N     + ++   L  L+ L  + +        S   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 686 NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPE-LCGLASLKILDL 744
           +   L   DIS           I   LS + +L +  N F   F P+    L +L  LDL
Sbjct: 419 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 745 SSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSAN 804
           S   L  + P   N+L+                                  L+VL++++N
Sbjct: 478 SQCQLEQLSPTAFNSLSS---------------------------------LQVLNMASN 504

Query: 805 YFSGEIPSQVTNLVGLQTLKLSHN 828
                       L  LQ + L  N
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  201 bits (512), Expect = 1e-55
 Identities = 106/527 (20%), Positives = 177/527 (33%), Gaps = 48/527 (9%)

Query: 246 FSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS 304
             S   LD+S N      + +        L  LDLS    Q     A Q+ + L  L L+
Sbjct: 27  PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES-KIPRA 363
            N   S     F+    L+ L      L       +G+L ++K L+++ N ++S K+P  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK-- 421
           F  L +L  ++LS NK+       L +       +  SLDLS N +  +   Q G FK  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLNPMNFI---QPGAFKEI 200

Query: 422 NLDSLDLSFNNISGHIP-LSLGQLSSLRYLDVSTNNLNG-----TLSENHFANLTKLVGF 475
            L  L L  N  S ++    +  L+ L    +               ++    L  L   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 476 DASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTI 535
           +     L            +    I L +C              ++    L + +I    
Sbjct: 261 EFRLAYL----------DYYLDDIIDLFNCL------------TNVSSFSLVSVTIERVK 298

Query: 536 PDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLD 594
                     +  +N  + Q             L+ L  +SN        +   SL  LD
Sbjct: 299 DFSYNFGWQHLELVNCKFGQF-----PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 595 LSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTG 654
           LS N L  +           +  L+ L+L  N +   +   ++    L  L    ++   
Sbjct: 354 LSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 655 NLPTS-LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLS 713
               S   +L +L  L +                + L +  ++ N F  N    I   L 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 714 GIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNL 760
            +  L L   Q     P     L+SL++L+++SN L  V     + L
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  195 bits (498), Expect = 9e-54
 Identities = 106/519 (20%), Positives = 180/519 (34%), Gaps = 49/519 (9%)

Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTN 282
           S + L  S   L H+   SF +F  L  LD+S  +    +I +     L +L  L L+ N
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGN 86

Query: 283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ-GSIPGSLG 341
             Q     A    +SLQ L     + +S           L+ L++++N +Q   +P    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLR----SVNLSGNKLSQEISQVLDMFSACASN 397
           NLT+++ LDLS N+++S      + L  +     S++LS N ++                
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR----- 201

Query: 398 VLESLDLSNNTL-FGLLTNQIGNFKNLDSLDLSFNNISGH---IPLSLGQLSSLRYLDVS 453
            L  L L NN     ++   I     L+   L                  L  L  L + 
Sbjct: 202 -LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 454 TNNLN-----GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG 508
              L           + F  LT +  F     ++              L+ +        
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 509 PQFPQWL----LSQNHLI------------YLDLSNSSISD-TIPDRLVKSLSQINYLNL 551
               + L     + N               +LDLS + +S      +     + + YL+L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 552 SYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP----SSLTTLDLSSNFLSGTLSRF 607
           S+N +     +     QLE LD   ++L             +L  LD+S        +  
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 608 LCNEMNNSMRLQVLNLGNNTLSGEI-PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSL 666
                +    L+VL +  N+      PD +     L FL L +       PT+  +LSSL
Sbjct: 441 FNGLSS----LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIP 705
           Q+L++  N+            T L+   +  N +  + P
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  193 bits (491), Expect = 8e-53
 Identities = 114/566 (20%), Positives = 194/566 (34%), Gaps = 56/566 (9%)

Query: 124 IHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLG 183
           I       +F   +IP  L    +   L++S      +  +   +   LQ LDL    + 
Sbjct: 10  ITYQCMELNFY--KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 184 GLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSF 243
            +    +     LS L  L L+G  +   + G    + L SL+ L      L  +     
Sbjct: 66  TIEDGAY---QSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPI 120

Query: 244 ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ---- 299
            +  +L  L+++ N      +      L NL  LDLS+N  Q      ++    +     
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDL------S 352
            LDLS N  +   P  F + I L  L+L  N    ++    +  L  ++   L      +
Sbjct: 181 SLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 353 FNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGL 412
              LE     A + L +L         L   +  ++D+F+   +  + S  L + T+  +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN--VSSFSLVSVTIERV 297

Query: 413 LTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKL 472
                        L+L              +L SL+ L  ++N      SE    +L  L
Sbjct: 298 --KDFSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352

Query: 473 VGFDASGNSL-VLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSI 531
              D S N L      S S      L+ + LS   +        L    L +LD  +S++
Sbjct: 353 ---DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

Query: 532 SDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLT 591
                  +  SL  + YL++S+                      +   +G      SSL 
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHT---------------RVAFNGIFNG-----LSSLE 448

Query: 592 TLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEND 651
            L ++ N         +  E+ N   L  L+L    L    P  + + S L  L++  N 
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRN---LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 652 FTGNLPTSLGTLSSLQILHLRGNRFS 677
                      L+SLQ + L  N + 
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  178 bits (453), Expect = 1e-47
 Identities = 100/502 (19%), Positives = 182/502 (36%), Gaps = 63/502 (12%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
           +   L HL  L L+ N  Q +        L +L  L         +    IG+L  L+ L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPL--ITNSLHSLETLRFSGC 233
           ++  N +    + ++   S+L+ L+HLDLS   +       L  +        +L  S  
Sbjct: 130 NVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 234 LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDL------STNNFQGA 287
            ++ I P +F     L  L + +N  + + +   + GL  L    L      +  N +  
Sbjct: 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 288 VPDAIQNSTSLQHLDLSRNH---FSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS-LGNL 343
              A++   +L   +    +   +   + D FN   ++   SL    ++     S     
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
             ++ ++  F +          +L+ L+ +  + NK     S          S  LE LD
Sbjct: 307 QHLELVNCKFGQFP------TLKLKSLKRLTFTSNKGGNAFS-----EVDLPS--LEFLD 353

Query: 404 LSNN--TLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTL 461
           LS N  +  G  +       +L  LDLSFN +   +  +   L  L +LD   +NL    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 462 SENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHL 521
             + F +L  L+  D S                                    L   + L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTR----------------------VAFNGIFNGL---SSL 447

Query: 522 IYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSL 579
             L ++ +S  +     +   L  + +L+LS  Q+  Q+     N  + L+ L+++SN L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQL 506

Query: 580 SG-PLPLIP--SSLTTLDLSSN 598
              P  +    +SL  + L +N
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (387), Expect = 3e-39
 Identities = 88/456 (19%), Positives = 162/456 (35%), Gaps = 59/456 (12%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF- 174
            +  LK L  L++++N  Q  ++P +  +L NL +L++S      I    +  L  +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 175 ---LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLR-- 229
              LDL  N +  +    F  +     L  L L     S  +        L  LE  R  
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIR----LHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLV 233

Query: 230 ----FSGCLLHHISPLSFANFSSLVT--LDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283
                +   L      +     +L      ++   +    I++    L N+    L +  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNL 343
            +     +   +   QHL+L    F         K   L+ L+ + N+   +      +L
Sbjct: 294 IERVKDFS--YNFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFSEV--DL 346

Query: 344 TSIKSLDLSFNRLESK--IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
            S++ LDLS N L  K    ++      L+ ++LS N     +  +   F       LE 
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG----VITMSSNFLGLEQ--LEH 400

Query: 402 LDLSNNTLFGLL-TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
           LD  ++ L  +   +   + +NL  LD+S  +           LSSL  L ++ N+    
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNH 520
              + F  L  L   D S                 QL+ +           P    S + 
Sbjct: 461 FLPDIFTELRNLTFLDLSQC---------------QLEQL----------SPTAFNSLSS 495

Query: 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
           L  L+++++ +  ++PD +   L+ +  + L  N  
Sbjct: 496 LQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (377), Expect = 7e-38
 Identities = 76/358 (21%), Positives = 128/358 (35%), Gaps = 24/358 (6%)

Query: 112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVG------IIPHQ 165
            I P       L  L L  N      +   +  L  L    +    F             
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 166 IGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSL 225
           +  L NL   + R  YL     +     + L+ +    L  V + +  D           
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY----NFGW 306

Query: 226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTN--N 283
           + L    C       L      SL  L  + N+          + L +L FLDLS N  +
Sbjct: 307 QHLELVNCKFGQFPTLKL---KSLKRLTFTSNKG---GNAFSEVDLPSLEFLDLSRNGLS 360

Query: 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS-LGN 342
           F+G    +   +TSL++LDLS N   + +   F     LE+L   ++ L+     S   +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 343 LTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESL 402
           L ++  LD+S           F  L  L  + ++GN   +      D+F+   +  L  L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRN--LTFL 475

Query: 403 DLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
           DLS   L  L      +  +L  L+++ N +         +L+SL+ + + TN  + +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (323), Expect = 4e-31
 Identities = 101/553 (18%), Positives = 165/553 (29%), Gaps = 127/553 (22%)

Query: 327 LSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQ 386
                    IP +L    S K+LDLSFN L      +F     L+ ++LS  ++      
Sbjct: 14  CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 387 VLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSS 446
                S      L +L L+ N +  L         +L  L     N++      +G L +
Sbjct: 71  AYQSLSH-----LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 447 LRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF 506
           L+ L+V+ N +       +F+NLT L   D S N +                        
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI------------------------ 161

Query: 507 IGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDA 566
                                  SI  T    L +       L+LS N +    P     
Sbjct: 162 ----------------------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 567 AQLETLDLSSNSLSGPLP------LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQV 620
            +L  L L +N  S  +       L    +  L L      G L +F  + +     L +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 621 LNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI 680
                  L                     + +  ++      L+++    L         
Sbjct: 260 EEFRLAYL---------------------DYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 681 PVS-LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL 739
             S       L L +    +F          +L  +  L+  +N+    F      L SL
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTL-------KLKSLKRLTFTSNKGGNAFS--EVDLPSL 349

Query: 740 KILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVL 799
           + LDLS N L+     C  +  G                                 LK L
Sbjct: 350 EFLDLSRNGLS-FKGCCSQSDFGTTS------------------------------LKYL 378

Query: 800 DLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNM-GAMKSVEALDFSSNRLQG-- 856
           DLS N     + S    L  L+ L   H+        ++  +++++  LD S    +   
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 857 -EIPKNMVNLEFL 868
             I   + +LE L
Sbjct: 438 NGIFNGLSSLEVL 450

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (266), Expect = 5e-24
 Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 10/222 (4%)

Query: 118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISR--AGFVGIIPHQIGNLSNLQFL 175
           L LK L  L  + N  +G      +  L +L +L++SR    F G         ++L++L
Sbjct: 322 LKLKSLKRLTFTSN--KGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
           DL  N +  +     G    L  L+HLD    +L + S+  +  + L +L  L  S    
Sbjct: 379 DLSFNGVITMSSNFLG----LEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHT 433

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS 295
                  F   SSL  L ++ N F ++ + +    L NL FLDLS    +   P A  + 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
           +SLQ L+++ N   S     F++   L+ + L  N    S P
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (263), Expect = 1e-23
 Identities = 87/487 (17%), Positives = 157/487 (32%), Gaps = 108/487 (22%)

Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
           +        + +  N      +  +LDLSFN +      S      L+ LD+S   +  T
Sbjct: 11  TYQCMELNFYKIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-T 66

Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNH 520
           + +  + +L+ L     +GN                +Q++                  + 
Sbjct: 67  IEDGAYQSLSHLSTLILTGN---------------PIQSLA----------LGAFSGLSS 101

Query: 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI--FGQIPDLNDAAQLETLDLSSNS 578
           L  L    ++++ ++ +  +  L  +  LN+++N I  F      ++   LE LDLSSN 
Sbjct: 102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 579 LSG-------PLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE 631
           +          L  +P    +LDLS N ++     F+       +RL  L L NN  S  
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-----FIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 632 IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELR 691
           +                         T +  L+ L++  L    F            E  
Sbjct: 216 VM-----------------------KTCIQGLAGLEVHRLVLGEFRN----------EGN 242

Query: 692 LFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF---FPPELCGLASLKILDLSSNN 748
           L    ++   G         L  + +   R      +          L ++    L S  
Sbjct: 243 LEKFDKSALEG---------LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808
           +       + + +                L +   K  ++P      LK L  ++N    
Sbjct: 294 IER-----VKDFSYNFGW---------QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 809 EIPSQVTNLVGLQTLKLSHNF--FSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLE 866
                  +L  L+ L LS N   F G    +     S++ LD S N +   +  N + LE
Sbjct: 340 AFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 396

Query: 867 FLEIFNI 873
            LE  + 
Sbjct: 397 QLEHLDF 403

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  188 bits (480), Expect = 2e-51
 Identities = 97/555 (17%), Positives = 177/555 (31%), Gaps = 79/555 (14%)

Query: 162 IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS 221
           IP  +   + ++ LDL  N +  +   D       + L+ L L    ++          S
Sbjct: 20  IPSGL--TAAMKSLDLSFNKITYIGHGDL---RACANLQVLILKSSRINTIEGDAF--YS 72

Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           L SLE L  S   L  +S   F   SSL  L++  N +    + +    L NL  L +  
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 282 NNFQGAVP-DAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSL 340
                 +        TSL  L++      +          D+ +L+L  +E    +    
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192

Query: 341 GNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV-- 398
             L+S++ L+L    L                +     + S    +  +        +  
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 399 ---LESLDLSNNTLFGLLTNQIGNFK--------NLDSLDLSFNNISGHIPLSLGQLSSL 447
              +E  D + N L     ++              +  L +    +   +      L  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 448 RYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFI 507
           + + V  + +   +  +   +L  L   D S N +V + +  S             +C  
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS-------------ACKG 358

Query: 508 GPQFPQWL-LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDA 566
                Q L LSQNHL  +  +   +          +L  +  L++S N            
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEIL---------LTLKNLTSLDISRNTFHPMPDSCQWP 409

Query: 567 AQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
            ++  L+LSS  +      IP +L  LD+S+N L  + S FL         LQ L +  N
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPR-------LQELYISRN 461

Query: 627 TLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQN 686
            L   +PD  +                            L ++ +  N+           
Sbjct: 462 KLK-TLPDASL-------------------------FPVLLVMKISRNQLKSVPDGIFDR 495

Query: 687 CTELRLFDISENEFV 701
            T L+   +  N + 
Sbjct: 496 LTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  185 bits (472), Expect = 2e-50
 Identities = 104/566 (18%), Positives = 182/566 (32%), Gaps = 81/566 (14%)

Query: 126 LDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGL 185
            D     F    IP  L     +  L++S      I    +   +NLQ L L+ + +  +
Sbjct: 10  CDGRSRSFT--SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 186 YVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFAN 245
             + F                              SL SLE L  S   L  +S   F  
Sbjct: 66  EGDAFY-----------------------------SLGSLEHLDLSDNHLSSLSSSWFGP 96

Query: 246 FSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVP-DAIQNSTSLQHLDLS 304
            SSL  L++  N +    + +    L NL  L +        +        TSL  L++ 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAF 364
                +          D+ +L+L  +E    +      L+S++ L+L    L        
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 365 KRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV-----LESLDLSNNTLFGLLTNQIGN 419
                   +     + S    +  +        +     +E  D + N L     ++   
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 420 FK--------NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTK 471
                      +  L +    +   +      L  ++ + V  + +   +  +   +L  
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS 335

Query: 472 LVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL-LSQNHLIYLDLSNSS 530
           L   D S N +V + +               S+C       Q L LSQNHL  +  +   
Sbjct: 336 LEFLDLSENLMVEEYLKN-------------SACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 531 ISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSL 590
           +          +L  +  L++S N             ++  L+LSS  +      IP +L
Sbjct: 383 L---------LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL 433

Query: 591 TTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEN 650
             LD+S+N L  + S FL         LQ L +  N L   +PD  +    L  + +  N
Sbjct: 434 EVLDVSNNNLD-SFSLFLPR-------LQELYISRNKLK-TLPDASLFPV-LLVMKISRN 483

Query: 651 DFTGNLPTSLGTLSSLQILHLRGNRF 676
                       L+SLQ + L  N +
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  183 bits (466), Expect = 1e-49
 Identities = 96/523 (18%), Positives = 177/523 (33%), Gaps = 40/523 (7%)

Query: 247 SSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRN 306
            +    D     F     +   L    +  LDLS N         ++   +LQ L L  +
Sbjct: 5   DASGVCDGRSRSFTS---IPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 307 HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES-KIPRAFK 365
             ++   D F     LE+L LS N L        G L+S+K L+L  N  ++  +   F 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 366 RLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDS 425
            L +L+++ +   +   EI +    F+   S  L  L++   +L    +  + + +++  
Sbjct: 121 NLTNLQTLRIGNVETFSEIRR--IDFAGLTS--LNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 426 LDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLK 485
           L L  +  +  + +    LSS+RYL++   NL      +                     
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRG-SV 234

Query: 486 VVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQ 545
           +   S+    +L    L    +             L  L   N S SD + +        
Sbjct: 235 LTDESFNELLKLLRYILELSEV-------EFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 546 INYLNLSYNQIFGQIPD-LNDAAQLETLDLSSNSLSGPLPLIPS---SLTTLDLSSNFLS 601
           I  L++    +F  +    +   +++ + + ++ +            SL  LDLS N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 602 GTLSRFLCNEMNNSMRLQVLNLGNNTLS--GEIPDCWMNWSFLFFLHLGENDFTGNLPTS 659
                           LQ L L  N L    +  +  +    L  L +  N F   +P S
Sbjct: 348 -EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 660 LGTLSSLQILHLRGNRFSGKIPVSLQNC--TELRLFDISENEFVGNIPTWIGERLSGIIL 717
                 ++ L+L            ++ C    L + D+S N             L  +  
Sbjct: 406 CQWPEKMRFLNLSSTGIR-----VVKTCIPQTLEVLDVSNNNL-----DSFSLFLPRLQE 455

Query: 718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNL 760
           L +  N+      P+      L ++ +S N L  V     + L
Sbjct: 456 LYISRNKLKTL--PDASLFPVLLVMKISRNQLKSVPDGIFDRL 496

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  165 bits (420), Expect = 2e-43
 Identities = 93/461 (20%), Positives = 169/461 (36%), Gaps = 44/461 (9%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGI-IPHQIGNLSNLQF 174
           +   L  L HLDLS N    +    + G L +L YLN+    +  + +     NL+NLQ 
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 175 LDL-RPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC 233
           L +        +   DF   + L+ L  L++  + L       L   S+  +  L     
Sbjct: 128 LRIGNVETFSEIRRIDF---AGLTSLNELEIKALSLRNYQSQSL--KSIRDIHHLTLHLS 182

Query: 234 LLHHISPLSFANFSSLVTLDISDNQFA----------DSSIVNQVLGLVNLVFLDLSTNN 283
               +  +     SS+  L++ D   A          + S   + L     V  D S N 
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKF--------IDLEYLSLSYNELQGS 335
               +   I   + ++  D + N      P   +          + +  L +    L   
Sbjct: 243 LL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 336 IPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
           +      L  +K + +  +++        + L+ L  ++LS N + +E  +      A  
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 396 SNVLESLDLSNNTL--FGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
           S  L++L LS N L         +   KNL SLD+S N     +P S      +R+L++S
Sbjct: 362 S--LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418

Query: 454 TNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQ 513
           +  +   +       L  L   D S N+L             +LQ + +S   +    P 
Sbjct: 419 STGIR-VVKTCIPQTLEVL---DVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPD 468

Query: 514 WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYN 554
             L    L+ + +S + +  ++PD +   L+ +  + L  N
Sbjct: 469 ASLFPV-LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (385), Expect = 4e-39
 Identities = 87/554 (15%), Positives = 171/554 (30%), Gaps = 109/554 (19%)

Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384
                     SIP  L    ++KSLDLSFN++        +   +L+ + L  ++++   
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG-HIPLSLGQ 443
                   +     LE LDLS+N L  L ++  G   +L  L+L  N      +      
Sbjct: 67  GDAFYSLGS-----LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 444 LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLS 503
           L++L+ L +        +    FA LT                                 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLT--------------------------------- 148

Query: 504 SCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD- 562
                            L  L++   S+      + +KS+  I++L L  ++    + + 
Sbjct: 149 ----------------SLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSES-AFLLEI 190

Query: 563 -LNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVL 621
             +  + +  L+L   +L+      P  +  +      L+   S       N  ++L   
Sbjct: 191 FADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 622 NLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIP 681
            L  + +       + + +         ++             +++ LH+        + 
Sbjct: 250 ILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 682 VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPE---LCGLAS 738
                  +++   +  ++    +P    + L  +  L L  N     +           S
Sbjct: 304 TVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 739 LKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKV 798
           L+ L LS N+L   + +    L  +                                L  
Sbjct: 363 LQTLVLSQNHLR-SMQKTGEILLTLKN------------------------------LTS 391

Query: 799 LDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEI 858
           LD+S N F   +P        ++ L LS         V     +++E LD S+N L    
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SF 446

Query: 859 PKNMVNLEFLEIFN 872
              +  L+ L I  
Sbjct: 447 SLFLPRLQELYISR 460

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (291), Expect = 4e-27
 Identities = 52/270 (19%), Positives = 103/270 (38%), Gaps = 18/270 (6%)

Query: 114 NPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQ 173
                        D + ++   +     + ++  +  L+I +      +      L  ++
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 174 FLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSK-TSDGPLITNSLHSLETLRFSG 232
            + +  + +  +         HL  L+ LDLS   + +          +  SL+TL  S 
Sbjct: 314 RITVENSKVFLVPCSFS---QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 233 CLLHHIS--PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPD 290
             L  +           +L +LDIS N F    + +       + FL+LS+   +  V  
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIR-VVKT 427

Query: 291 AIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLD 350
            I    +L+ LD+S N+  S    +      L+ L +S N+L+ ++P +      +  + 
Sbjct: 428 CIP--QTLEVLDVSNNNLDS----FSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMK 479

Query: 351 LSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
           +S N+L+S     F RL  L+ + L  N  
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (251), Expect = 4e-22
 Identities = 43/236 (18%), Positives = 80/236 (33%), Gaps = 20/236 (8%)

Query: 114 NPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQ 173
               +    +  L +                LE +  + +  +    +      +L +L+
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDL-STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 174 FLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC 233
           FLDL  N +   Y+++         L+ L LS   L        I  +L +L +L  S  
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

Query: 234 LLHHISPLSFANFSSLVTLDISDNQFA----------------DSSIVNQVLGLVNLVFL 277
             H +   S      +  L++S                     ++++ +  L L  L  L
Sbjct: 398 TFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456

Query: 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
            +S N  +  +PDA      L  + +SRN   S     F++   L+ + L  N   
Sbjct: 457 YISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.0 bits (151), Expect = 5e-10
 Identities = 42/305 (13%), Positives = 84/305 (27%), Gaps = 84/305 (27%)

Query: 568 QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
                D  S S +     + +++ +LDLS N ++  +      ++     LQVL L ++ 
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKIT-YIGH---GDLRACANLQVLILKSSR 61

Query: 628 LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC 687
           ++  I                          +  +L SL+ L L  N  S          
Sbjct: 62  IN-TIE-----------------------GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97

Query: 688 TELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
           + L+  ++  N                      +       FP     L +L+ L + + 
Sbjct: 98  SSLKYLNLMGN--------------------PYQTLGVTSLFP----NLTNLQTLRIGNV 133

Query: 748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS 807
                I R   + AG+                                L  L++ A    
Sbjct: 134 ETFSEIRR--IDFAGLTS------------------------------LNELEIKALSLR 161

Query: 808 GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEF 867
                 + ++  +  L L  +  +  + +    + SV  L+     L       +   E 
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 868 LEIFN 872
                
Sbjct: 222 SSPMK 226

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 32/217 (14%), Positives = 64/217 (29%), Gaps = 37/217 (17%)

Query: 661 GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSL 720
           G  ++++ L L  N+ +      L+ C  L++  +  +     I       L  +  L L
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDL 81

Query: 721 RANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIV 780
             N            L+SLK L+L  N                    L V   F +    
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ----------------TLGVTSLFPNL--- 122

Query: 781 YKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLVGLQTLKLSHNFFSGRIPVNMG 839
                          L+ L +       EI       L  L  L++           ++ 
Sbjct: 123 -------------TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 840 AMKSVEALDFSSNRLQG---EIPKNMVNLEFLEIFNI 873
           +++ +  L    +            + ++ +LE+ + 
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 23/148 (15%), Positives = 40/148 (27%), Gaps = 39/148 (26%)

Query: 112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSN 171
            +  S    + +  L+LS    +   +                                 
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR--VVKT--------------------------CIPQT 432

Query: 172 LQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFS 231
           L+ LD+  N L             L  L+ L +S   L    D  L       L  ++ S
Sbjct: 433 LEVLDVSNNNLDSF-------SLFLPRLQELYISRNKLKTLPDASL----FPVLLVMKIS 481

Query: 232 GCLLHHISPLSFANFSSLVTLDISDNQF 259
              L  +    F   +SL  + +  N +
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  168 bits (428), Expect = 4e-45
 Identities = 118/525 (22%), Positives = 197/525 (37%), Gaps = 84/525 (16%)

Query: 166 IGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSL 225
              L+      L    +           + L  +  L    + +            L++L
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQADRLGIKSIDG----VEYLNNL 70

Query: 226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
             + FS   L  I+PL   N + LV + +++NQ AD + +     L NL  L L  N   
Sbjct: 71  TQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLAN---LTNLTGLTLFNNQIT 125

Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
               D ++N T+L  L+LS N  S       +    L+ LS   N++    P  L NLT+
Sbjct: 126 D--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTT 178

Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS 405
           ++ LD+S N++         +L +L S+  + N++S      +       +  L+ L L+
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD-----ITPLGILTN--LDELSLN 229

Query: 406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENH 465
            N L  +    + +  NL  LDL+ N IS   PLS   L+ L  L +  N ++       
Sbjct: 230 GNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--- 282

Query: 466 FANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLD 525
            A LT L   + + N L  + +SP                         + +  +L YL 
Sbjct: 283 LAGLTALTNLELNENQL--EDISP-------------------------ISNLKNLTYLT 315

Query: 526 LSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL 585
           L  ++ISD  P   V SL+++  L    N++   +  L +   +  L    N +S   PL
Sbjct: 316 LYFNNISDISP---VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTPL 371

Query: 586 IP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF 644
              + +T L L+    +     +  N       + + N   N     I       +    
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKAN-------VSIPNTVKNVTGALIA----PATISDG 420

Query: 645 LHLGENDFTGNLPTSLG----TLSSLQILHLRGNRFSGKIPVSLQ 685
               E D T NLP+       T S    +      FSG +   L+
Sbjct: 421 GSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLK 465

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  168 bits (427), Expect = 4e-45
 Identities = 104/517 (20%), Positives = 180/517 (34%), Gaps = 97/517 (18%)

Query: 237 HISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNST 296
            I   +    +  +   +      D+        L  +  L       +    D ++   
Sbjct: 16  QIFTDT--ALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKS--IDGVEYLN 68

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
           +L  ++ S N  +   P        L  + ++ N++    P  L NLT++  L L  N++
Sbjct: 69  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124

Query: 357 ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQ 416
               P   K L +L  + LS N +S      +   S   S  L+ L   N  +  L    
Sbjct: 125 TDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTS--LQQLSFGNQ-VTDLKP-- 172

Query: 417 IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFD 476
           + N   L+ LD+S N +S      L +L++L  L  + N ++          LT L    
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELS 227

Query: 477 ASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIP 536
            +GN L                   + +          L S  +L  LDL+N+ IS+  P
Sbjct: 228 LNGNQL-----------------KDIGT----------LASLTNLTDLDLANNQISNLAP 260

Query: 537 DRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL-IPSSLTTLDL 595
              +  L+++  L L  NQI   I  L     L  L+L+ N L    P+    +LT L L
Sbjct: 261 ---LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 316

Query: 596 SSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGN 655
             N +S        + +++  +LQ L   NN +S                          
Sbjct: 317 YFNNISDI------SPVSSLTKLQRLFFYNNKVSD------------------------- 345

Query: 656 LPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI 715
             +SL  L+++  L    N+ S   P  L N T +    +++  +  N P      +S  
Sbjct: 346 -VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT-NAPVNYKANVSIP 401

Query: 716 ILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGV 752
             +           P  +    S    D++ N  +  
Sbjct: 402 NTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  162 bits (412), Expect = 4e-43
 Identities = 105/546 (19%), Positives = 193/546 (35%), Gaps = 99/546 (18%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
            +   L   +   L   +            L+ +  L   R G   I    +  L+NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQ 72

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL 234
           ++   N L  +        + L  L                         L  +  +   
Sbjct: 73  INFSNNQLTDI--------TPLKNLT-----------------------KLVDILMNNNQ 101

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
           +  I+PL+  N ++L  L + +NQ  D   +     L NL  L+LS+N        A+  
Sbjct: 102 IADITPLA--NLTNLTGLTLFNNQITDIDPLKN---LTNLNRLELSSNTISD--ISALSG 154

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
            TSLQ L                    LE L +S N++  S    L  LT+++SL  + N
Sbjct: 155 LTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 209

Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT 414
           ++    P     L +L  ++L+GN+L       +   ++  +  L  LDL+NN +  L  
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQLKD-----IGTLASLTN--LTDLDLANNQISNL-- 258

Query: 415 NQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVG 474
             +     L  L L  N IS   PL+   L++L  L+++ N L      +  +NL  L  
Sbjct: 259 APLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDI---SPISNLKNLTY 313

Query: 475 FDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDT 534
                N++                   +SS                L  L   N+ +SD 
Sbjct: 314 LTLYFNNIS--------------DISPVSSL-------------TKLQRLFFYNNKVSDV 346

Query: 535 IPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLD 594
                + +L+ IN+L+  +NQI   +  L +  ++  L L+  + +       ++++  +
Sbjct: 347 SS---LANLTNINWLSAGHNQISD-LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 595 LSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTG 654
              N     ++      +++       ++  N  S    +    +S    +  G   F+G
Sbjct: 403 TVKNVTGALIAP---ATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSG 458

Query: 655 NLPTSL 660
            +   L
Sbjct: 459 TVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (343), Expect = 5e-34
 Identities = 93/486 (19%), Positives = 173/486 (35%), Gaps = 58/486 (11%)

Query: 345 SIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDL 404
            + S  ++ +   ++I      L       L    ++  +S      +      + +L  
Sbjct: 2   PLGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS-----QTDLDQ--VTTLQA 53

Query: 405 SNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSEN 464
               +  +  + +    NL  ++ S N ++   PL    L+ L  + ++ N +       
Sbjct: 54  DRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIA---DIT 106

Query: 465 HFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYL 524
             ANLT L G     N   +  + P       L  + LSS  I       L     L  L
Sbjct: 107 PLANLTNLTGLTLFNNQ--ITDIDPLKNLT-NLNRLELSSNTI--SDISALSGLTSLQQL 161

Query: 525 DLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLP 584
              N  ++D  P   + +L+ +  L++S N++   I  L     LE+L  ++N +S   P
Sbjct: 162 SFGN-QVTDLKP---LANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDITP 216

Query: 585 L-IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLF 643
           L I ++L  L L+ N L           + +   L  L+L NN +S   P      + L 
Sbjct: 217 LGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISNLAPLS--GLTKLT 268

Query: 644 FLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN 703
            L LG N  +    + L  L++L  L L  N+     P  + N   L    +  N     
Sbjct: 269 ELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324

Query: 704 IPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGM 763
            P      L+ +  L    N+        L  L ++  L    N ++ + P  + NL  +
Sbjct: 325 SPV---SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRI 377

Query: 764 AKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEI-PSQVTNLVGLQT 822
            +            L +  +     P+ Y   + + +   N     I P+ +++      
Sbjct: 378 TQ------------LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 823 LKLSHN 828
             ++ N
Sbjct: 426 PDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (331), Expect = 1e-32
 Identities = 95/535 (17%), Positives = 164/535 (30%), Gaps = 149/535 (27%)

Query: 339 SLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV 398
           +   L       L    +   +      L  + ++      +       +D      +  
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-----IDGVEYLNN-- 69

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
           L  ++ SNN L  +    + N   L  + ++ N I+   PL    L++L  L +  N + 
Sbjct: 70  LTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQIT 125

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518
                +   NLT L   + S N++    +S                          L   
Sbjct: 126 DI---DPLKNLTNLNRLELSSNTI--SDISA-------------------------LSGL 155

Query: 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNS 578
             L  L   N  ++D  P   + +L+ +  L++S N++   I  L     LE+L  ++N 
Sbjct: 156 TSLQQLSFGNQ-VTDLKP---LANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQ 210

Query: 579 LSGPLPL-IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM 637
           +S   PL I ++L  L L+ N L           + +   L  L+L NN +S   P    
Sbjct: 211 ISDITPLGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISNLAP---- 260

Query: 638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE 697
                                 L  L+ L  L L  N+ S   P  L   T L   +++E
Sbjct: 261 ----------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296

Query: 698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCI 757
           N            +L  I                 +  L +L  L L  NN++ + P  +
Sbjct: 297 N------------QLEDI---------------SPISNLKNLTYLTLYFNNISDISP--V 327

Query: 758 NNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNL 817
           ++L                                   L+ L    N  S    S + NL
Sbjct: 328 SSLTK---------------------------------LQRLFFYNNKVSD--VSSLANL 352

Query: 818 VGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
             +  L   HN  S   P+    +  +  L  +             N+       
Sbjct: 353 TNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 35/215 (16%), Positives = 67/215 (31%), Gaps = 46/215 (21%)

Query: 658 TSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717
            +   L+      L     +  +     +  ++          + +I     E L+ +  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG-IKSIDGV--EYLNNLTQ 72

Query: 718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDA 777
           ++   NQ        L  L  L  + +++N +  + P  + NL                 
Sbjct: 73  INFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANLTN--------------- 113

Query: 778 LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVN 837
                             L  L L  N  +   P  + NL  L  L+LS N  S      
Sbjct: 114 ------------------LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISA 151

Query: 838 MGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
           +  + S++ L F +     +   N+  LE L+I +
Sbjct: 152 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  158 bits (403), Expect = 6e-43
 Identities = 74/367 (20%), Positives = 147/367 (40%), Gaps = 38/367 (10%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
               L   I   L       +        LE++  L ++      I    I  L+NL++L
Sbjct: 17  PDADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVASIQG--IEYLTNLEYL 71

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
           +L  N +  +        S+L  L +L +    ++  S   L   +L +L  L  +   +
Sbjct: 72  NLNGNQITDI--SPL---SNLVKLTNLYIGTNKITDIS--AL--QNLTNLRELYLNEDNI 122

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS 295
             ISPL+  N + + +L++  N     S ++ +  +  L +L ++ +  +      I N 
Sbjct: 123 SDISPLA--NLTKMYSLNLGANHN--LSDLSPLSNMTGLNYLTVTESKVKD--VTPIANL 176

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
           T L  L L+ N      P        L Y +   N++    P  + N+T + SL +  N+
Sbjct: 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232

Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           +    P     L  L  + +  N++S      ++         L+ L++ +N +  +  +
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISD-----INAVKDLTK--LKMLNVGSNQISDI--S 281

Query: 416 QIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGF 475
            + N   L+SL L+ N +       +G L++L  L +S N++         A+L+K+   
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSA 338

Query: 476 DASGNSL 482
           D +   +
Sbjct: 339 DFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (341), Expect = 1e-34
 Identities = 68/339 (20%), Positives = 131/339 (38%), Gaps = 49/339 (14%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
            +   L+ +  L ++      IQ    +  L NL YLN++      I P  + NL  L  
Sbjct: 38  VTQEELESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG-----------------VDLSKTSDGPL 217
           L +  N +      D   + +L+ L+ L L+                  ++L    +   
Sbjct: 93  LYIGTNKI-----TDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD 147

Query: 218 ITN--SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLV 275
           ++   ++  L  L  +   +  ++P++  N + L +L ++ NQ  D S +     L +L 
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIEDISPLA---SLTSLH 202

Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
           +     N         + N T L  L +  N  +   P        L +L +  N++   
Sbjct: 203 YFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-D 257

Query: 336 IPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
           I   + +LT +K L++  N++          L  L S+ L+ N+L  E  +V+   +   
Sbjct: 258 INA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-- 312

Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS 434
              L +L LS N +  +    + +   +DS D +   I 
Sbjct: 313 ---LTTLFLSQNHITDI--RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 4e-32
 Identities = 83/435 (19%), Positives = 159/435 (36%), Gaps = 92/435 (21%)

Query: 423 LDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
             +L      I+   P +   L+      +   ++   +++    ++TKL     +G   
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVTQEELESITKL---VVAGE-- 54

Query: 483 VLKVVSPSWTPPFQLQAI-GLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVK 541
                        ++ +I G+                 +L YL+L+ + I+D  P   + 
Sbjct: 55  -------------KVASIQGIEYL-------------TNLEYLNLNGNQITDISP---LS 85

Query: 542 SLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLDLSSNFL 600
           +L ++  L +  N+I   I  L +   L  L L+ +++S   PL   + + +L+L +N  
Sbjct: 86  NLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHN 144

Query: 601 SGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSL 660
              LS       +N   L  L +  + +    P    N + L+ L L  N       + L
Sbjct: 145 LSDLSPL-----SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPL 195

Query: 661 GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSL 720
            +L+SL       N+ +   P  + N T L    I  N+     P      LS +  L +
Sbjct: 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEI 250

Query: 721 RANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIV 780
             NQ        +  L  LK+L++ SN ++      I+ L  +++               
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISD-----ISVLNNLSQ--------------- 288

Query: 781 YKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGA 840
                          L  L L+ N    E    +  L  L TL LS N  +   P+   +
Sbjct: 289 ---------------LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--AS 331

Query: 841 MKSVEALDFSSNRLQ 855
           +  +++ DF++  ++
Sbjct: 332 LSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (320), Expect = 6e-32
 Identities = 60/268 (22%), Positives = 115/268 (42%), Gaps = 24/268 (8%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
            +L  L +L  L L+ ++   I     L +L  +  LN+     +  +   + N++ L +
Sbjct: 104 SALQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL 234
           L +  + +  +       +++L+ L  L L+   +   S  PL   SL SL         
Sbjct: 160 LTVTESKVKDVTP-----IANLTDLYSLSLNYNQIEDIS--PL--ASLTSLHYFTAYVNQ 210

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
           +  I+P++  N + L +L I +N+  D S +     L  L +L++ TN       +A+++
Sbjct: 211 ITDITPVA--NMTRLNSLKIGNNKITDLSPLAN---LSQLTWLEIGTNQISD--INAVKD 263

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
            T L+ L++  N  S       N    L  L L+ N+L       +G LT++ +L LS N
Sbjct: 264 LTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQ 382
            +    P     L  + S + +   + +
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (313), Expect = 5e-31
 Identities = 80/409 (19%), Positives = 145/409 (35%), Gaps = 84/409 (20%)

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
            +L      +    P     L       L    ++  ++          S  +  L ++ 
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT-----QEELES--ITKLVVAG 53

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHF 466
             +  +    I    NL+ L+L+ N I+   PLS   L  L  L + TN +      +  
Sbjct: 54  EKVASI--QGIEYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKIT---DISAL 106

Query: 467 ANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDL 526
            NLT L                                                   L L
Sbjct: 107 QNLTNLR-------------------------------------------------ELYL 117

Query: 527 SNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLI 586
           +  +ISD  P   + +L+++  LNL  N     +  L++   L  L ++ + +    P+ 
Sbjct: 118 NEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA 174

Query: 587 P-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFL 645
             + L +L L+ N +         + + +   L       N ++   P    N + L  L
Sbjct: 175 NLTDLYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITDITPVA--NMTRLNSL 226

Query: 646 HLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIP 705
            +G N  T    + L  LS L  L +  N+ S  I  ++++ T+L++ ++  N+ + +I 
Sbjct: 227 KIGNNKITD--LSPLANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQ-ISDIS 281

Query: 706 TWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754
                 LS +  L L  NQ        + GL +L  L LS N++T + P
Sbjct: 282 VL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (280), Expect = 1e-26
 Identities = 65/355 (18%), Positives = 132/355 (37%), Gaps = 60/355 (16%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSL 579
             I   L  +S++D +     + L  I  L ++  ++   I  +     LE L+L+ N +
Sbjct: 23  EGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV-ASIQGIEYLTNLEYLNLNGNQI 78

Query: 580 SGPLPLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN 638
           +   PL     LT L + +N ++        + + N   L+ L L  + +S   P    N
Sbjct: 79  TDISPLSNLVKLTNLYIGTNKITD------ISALQNLTNLRELYLNEDNISDISPLA--N 130

Query: 639 WSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698
            + ++ L+LG N    +  + L  ++ L  L +  ++     P  + N T+L    ++ N
Sbjct: 131 LTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN 758
           +     P      L+ +   +   NQ        +  +  L  L + +N +T + P    
Sbjct: 188 QIEDISPL---ASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP---- 238

Query: 759 NLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLV 818
            LA +++                              L  L++  N  S    + V +L 
Sbjct: 239 -LANLSQ------------------------------LTWLEIGTNQISD--INAVKDLT 265

Query: 819 GLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
            L+ L +  N  S      +  +  + +L  ++N+L  E  + +  L  L    +
Sbjct: 266 KLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 46/216 (21%)

Query: 658 TSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717
                L+      L+    +  +    +    +    ++  + V +I     E L+ +  
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-VASIQGI--EYLTNLEY 70

Query: 718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDA 777
           L+L  NQ        L  L  L  L + +N +T      I+ L  +              
Sbjct: 71  LNLNGNQITDI--SPLSNLVKLTNLYIGTNKITD-----ISALQNLTN------------ 111

Query: 778 LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVN 837
                             L+ L L+ +  S   P  + NL  + +L L  N     +   
Sbjct: 112 ------------------LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-P 150

Query: 838 MGAMKSVEALDFSSNRLQGEIP-KNMVNLEFLEIFN 872
           +  M  +  L  + ++++   P  N+ +L  L +  
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 33/209 (15%), Positives = 65/209 (31%), Gaps = 48/209 (22%)

Query: 666 LQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF 725
              L       +   P    +  E     + +      +     E L  I  L +   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQ---EELESITKLVVAGEKV 56

Query: 726 HGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKV 785
                  +  L +L+ L+L+ N +T + P     L+ + K                    
Sbjct: 57  ASI--QGIEYLTNLEYLNLNGNQITDISP-----LSNLVK-------------------- 89

Query: 786 VKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVE 845
                     L  L +  N  +    S + NL  L+ L L+ +  S   P+    +  + 
Sbjct: 90  ----------LTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPL--ANLTKMY 135

Query: 846 ALDFSSNRLQGEIP--KNMVNLEFLEIFN 872
           +L+  +N    ++    NM  L +L +  
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTE 164

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  158 bits (401), Expect = 9e-42
 Identities = 108/505 (21%), Positives = 172/505 (34%), Gaps = 107/505 (21%)

Query: 269 LGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFID------- 321
           +    L      ++N    +P   +N  S      + + +  + P    +  +       
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 322 ------LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNL 375
                    L L+   L  S+P    +L    SL  S N L   +P   + L+ L   N 
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLTE-LPELPQSLKSLLVDNN 121

Query: 376 SGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG 435
           +   LS                 LE L +SNN L  L   ++ N   L  +D+  N++  
Sbjct: 122 NLKALSDLPPL------------LEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLK- 166

Query: 436 HIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPF 495
            +P       SL ++    N L   L E    NL  L    A  NSL             
Sbjct: 167 KLP---DLPPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSL------------- 207

Query: 496 QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ 555
                         + P   LS   L  +   N+ +   +P+  +++L  +  +    N 
Sbjct: 208 -------------KKLPDLPLS---LESIVAGNNILE-ELPE--LQNLPFLTTIYADNNL 248

Query: 556 IFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNS 615
           +   +PDL     LE L++  N L+  LP +P SLT LD+S N  S  LS    N     
Sbjct: 249 L-KTLPDL--PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFS-GLSELPPN----- 298

Query: 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNR 675
             L  LN  +N +   + D   +   L  L++  N     LP        L+ L    N 
Sbjct: 299 --LYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPP---RLERLIASFNH 348

Query: 676 FSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCG 735
            + ++P   QN  +L    +  N      P           +  LR N      P     
Sbjct: 349 LA-EVPELPQNLKQL---HVEYNPLR-EFPDIPES------VEDLRMNSHLAEVPELPQ- 396

Query: 736 LASLKILDLSSNNLTGVIPRCINNL 760
             +LK L + +N L    P    ++
Sbjct: 397 --NLKQLHVETNPLR-EFPDIPESV 418

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  143 bits (363), Expect = 1e-36
 Identities = 103/586 (17%), Positives = 193/586 (32%), Gaps = 138/586 (23%)

Query: 113 INPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNL 172
           INP  +    L       ++    ++P    ++++      + + +    P   G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 173 QFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSG 232
               LR                       L+L+ + LS       +      LE+L  S 
Sbjct: 61  AVSRLRDCLDRQA--------------HELELNNLGLSS------LPELPPHLESLVASC 100

Query: 233 CLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI 292
             L  + P    +  SL+  + +    +D            L +L +S N  +  +P+ +
Sbjct: 101 NSLTEL-PELPQSLKSLLVDNNNLKALSDL--------PPLLEYLGVSNNQLE-KLPE-L 149

Query: 293 QNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS 352
           QNS+ L+ +D+  N     +PD       LE+++   N+L+  +P  L NL  + ++   
Sbjct: 150 QNSSFLKIIDVDNNSLKK-LPDLPPS---LEFIAAGNNQLE-ELP-ELQNLPFLTAIYAD 203

Query: 353 FNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGL 412
            N L+                      L                  LES+   NN L  L
Sbjct: 204 NNSLKK---------------------LPDLPLS------------LESIVAGNNILEEL 230

Query: 413 LTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKL 472
              ++ N   L ++    N +   +P     L +L   D    +L          +LT L
Sbjct: 231 --PELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL-----PELPQSLTFL 282

Query: 473 VGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSIS 532
              +   + L                           + P       +L YL+ S++ I 
Sbjct: 283 DVSENIFSGL--------------------------SELPP------NLYYLNASSNEIR 310

Query: 533 DTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTT 592
                 L      +  LN+S N++  ++P L    +LE L  S N L+  +P +P +L  
Sbjct: 311 -----SLCDLPPSLEELNVSNNKL-IELPALP--PRLERLIASFNHLAE-VPELPQNLKQ 361

Query: 593 LDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDF 652
           L +  N L         +       ++ L + ++    E+P+   N   L  LH+  N  
Sbjct: 362 LHVEYNPLR-EFPDIPES-------VEDLRMNSH--LAEVPELPQN---LKQLHVETNPL 408

Query: 653 TGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698
               P       S++ L +   R       + +   +L       +
Sbjct: 409 R-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (264), Expect = 4e-24
 Identities = 83/463 (17%), Positives = 147/463 (31%), Gaps = 100/463 (21%)

Query: 412 LLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTK 471
            +  +  +   L       +N++  +P+    + S      + +                
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPG------- 53

Query: 472 LVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSI 531
                 +G    + V         Q   + L++  +    P+      HL  L  S +S+
Sbjct: 54  ------NGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSL 103

Query: 532 SDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP--SS 589
           +  +P+ L +SL  +   N +   +    P       LE L +S+N L   LP +   S 
Sbjct: 104 T-ELPE-LPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLEK-LPELQNSSF 154

Query: 590 LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE 649
           L  +D+ +N L   L     +       L+ +  GNN L  E+P+   N  FL  ++   
Sbjct: 155 LKIIDVDNNSLK-KLPDLPPS-------LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADN 204

Query: 650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIG 709
           N     LP       SL+ +    N         LQN   L       N     +P    
Sbjct: 205 NSLK-KLPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 710 ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLE 769
                +  L++R N      P     L  L + +   + L+ + P               
Sbjct: 258 ----SLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSGLSELPPN-------------- 298

Query: 770 VDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNF 829
                                     L  L+ S+N     +     +L   + L +S+N 
Sbjct: 299 --------------------------LYYLNASSNEIR-SLCDLPPSL---EELNVSNNK 328

Query: 830 FSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
               +P        +E L  S N L  E+P+   NL+ L +  
Sbjct: 329 LI-ELPALPP---RLERLIASFNHLA-EVPELPQNLKQLHVEY 366

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 49/268 (18%), Positives = 83/268 (30%), Gaps = 44/268 (16%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
           P L  L  L  +    N  +   +P    SLE L   +         +P    +L+ L  
Sbjct: 231 PELQNLPFLTTIYADNNLLK--TLPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDV 284

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL 234
            +   + L  L             L +L+ S  ++        + +   SLE L  S   
Sbjct: 285 SENIFSGLSEL----------PPNLYYLNASSNEIRS------LCDLPPSLEELNVSNNK 328

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
           L  +  L       L  L  S N  A+           NL  L +  N  +   PD  ++
Sbjct: 329 LIELPAL----PPRLERLIASFNHLAEVP-----ELPQNLKQLHVEYNPLR-EFPDIPES 378

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
              L+      N   + VP+       L+ L +  N L+   P    ++     L ++  
Sbjct: 379 VEDLRM-----NSHLAEVPELPQN---LKQLHVETNPLR-EFPDIPESVED---LRMNSE 426

Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQ 382
           R+      A +    L       +    
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  157 bits (398), Expect = 3e-41
 Identities = 72/295 (24%), Positives = 123/295 (41%), Gaps = 14/295 (4%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
                 HL  L+L+ N    ++ P    +L NL  L +       I       LSNL  L
Sbjct: 51  EFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
           D+  N +  L    F     L  LK L++   DL   S      + L+SLE L    C L
Sbjct: 110 DISENKIVILLDYMF---QDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNL 164

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQN 294
             I   + ++   L+ L +       ++I +     L  L  L++S   +   +      
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
             +L  L ++  + ++         + L +L+LSYN +       L  L  ++ + L   
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL 409
           +L    P AF+ L +LR +N+SGN+L+  + +   +F +  +  LE+L L +N L
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEE--SVFHSVGN--LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  154 bits (391), Expect = 3e-40
 Identities = 63/335 (18%), Positives = 124/335 (37%), Gaps = 17/335 (5%)

Query: 125 HLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG 184
            +      F    +P  +        L++ +     +   +  +  +L+ L+L  N +  
Sbjct: 15  AVLCHRKRFV--AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 185 LYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFA 244
           +    F   ++L  L+ L L    L     G      L +L  L  S   +  +    F 
Sbjct: 71  VEPGAF---NNLFNLRTLGLRSNRLKLIPLGVF--TGLSNLTKLDISENKIVILLDYMFQ 125

Query: 245 NFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL 303
           +  +L +L++ DN      I ++   GL +L  L L   N      +A+ +   L  L L
Sbjct: 126 DLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA 363
              + ++     F +   L+ L +S+     ++  +     ++ SL ++   L +    A
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNL 423
            + L +LR +NLS N +S  I     M        L+ + L    L  +          L
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEG--SMLHELLR--LQEIQLVGGQLAVVEPYAFRGLNYL 298

Query: 424 DSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
             L++S N ++         + +L  L + +N L 
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  152 bits (385), Expect = 1e-39
 Identities = 72/335 (21%), Positives = 131/335 (39%), Gaps = 37/335 (11%)

Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTN 282
               L      +  ++   FA+F  L  L++++N    S++       L NL  L L +N
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSN 90

Query: 283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGN 342
             +          ++L  LD+S N     +   F    +L+ L +  N+L      +   
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 343 LTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESL 402
           L S++ L L    L S    A   L  L  + L    ++  I      F       L+ L
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRD--YSFKRLYR--LKVL 205

Query: 403 DLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP-LSLGQLSSLRYLDVSTNNLNGTL 461
           ++S+      +T       NL SL ++  N++  +P L++  L  LR+L++S N ++ T+
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TI 263

Query: 462 SENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHL 521
             +    L +L      G    L VV P     F+    GL+                 L
Sbjct: 264 EGSMLHELLRLQEIQLVGGQ--LAVVEPY---AFR----GLNY----------------L 298

Query: 522 IYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
             L++S + ++ T+ + +  S+  +  L L  N +
Sbjct: 299 RVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  152 bits (385), Expect = 2e-39
 Identities = 91/395 (23%), Positives = 151/395 (38%), Gaps = 80/395 (20%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
               LDL  N  +    D   +   L+ L+L+ N  S+  P  FN   +L  L L  N L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
           +    G    L+++  LD+S N++   +   F+ L +L+S+ +  N L   IS     FS
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH--RAFS 149

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDV 452
              S  LE L L    L  + T  + +   L  L L   NI+     S  +L  L+ L++
Sbjct: 150 GLNS--LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 453 STNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
           S      T++ N    L                                           
Sbjct: 208 SHWPYLDTMTPNCLYGL------------------------------------------- 224

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLE 570
                  +L  L +++ +++  +P   V+ L  + +LNLSYN I   I    L++  +L+
Sbjct: 225 -------NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQ 275

Query: 571 TLDLSSNSLSGPLPLIP-------SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNL 623
            + L    L+     +        + L  L++S N L+ TL   + + + N   L+ L L
Sbjct: 276 EIQLVGGQLAV----VEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN---LETLIL 327

Query: 624 GNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
            +N L+    DC + W    F      +F    PT
Sbjct: 328 DSNPLAC---DCRLLW---VFRRRWRLNFNRQQPT 356

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  144 bits (364), Expect = 9e-37
 Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 7/266 (2%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
           +   L +L  L L  N  + I        L NL  L+IS    V ++ +   +L NL+ L
Sbjct: 75  AFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
           ++  N L  +    F   S L+ L+ L L   +L+      L  + LH L  LR     +
Sbjct: 134 EVGDNDLVYISHRAF---SGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNI 188

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS 295
           + I   SF     L  L+IS   +   ++    L  +NL  L ++  N       A+++ 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
             L+ L+LS N  S+      ++ + L+ + L   +L    P +   L  ++ L++S N+
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLS 381
           L +     F  + +L ++ L  N L+
Sbjct: 308 LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 76/389 (19%), Positives = 138/389 (35%), Gaps = 80/389 (20%)

Query: 371 RSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSF 430
           R+V     +    + + +             LDL  N +  L  ++  +F +L+ L+L+ 
Sbjct: 14  RAVLCHRKRFV-AVPEGIPTE-------TRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 431 NNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPS 490
           N +S   P +   L +LR L + +N L   +    F  L+ L   D S N +   ++   
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI--VILLDY 122

Query: 491 WTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLN 550
               FQ     L +                L  L++ ++ +   I  R    L+ +  L 
Sbjct: 123 M---FQ----DLYN----------------LKSLEVGDNDLV-YISHRAFSGLNSLEQLT 158

Query: 551 LSYNQIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLIP-------SSLTTLDLSSNFLS 601
           L    +   IP   L+    L  L L   +++     I          L  L++S     
Sbjct: 159 LEKCNL-TSIPTEALSHLHGLIVLRLRHLNINA----IRDYSFKRLYRLKVLEISHWPYL 213

Query: 602 GTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDC-WMNWSFLFFLHLGENDFTGNLPTSL 660
            T++      +N    L  L++ +  L+  +P     +  +L FL+L  N  +    + L
Sbjct: 214 DTMTPNCLYGLN----LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 661 GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSL 720
             L  LQ + L G +                L  +    F G         L+ + +L++
Sbjct: 269 HELLRLQEIQLVGGQ----------------LAVVEPYAFRG---------LNYLRVLNV 303

Query: 721 RANQFHGFFPPELCGLASLKILDLSSNNL 749
             NQ           + +L+ L L SN L
Sbjct: 304 SGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (268), Expect = 1e-24
 Identities = 68/344 (19%), Positives = 125/344 (36%), Gaps = 51/344 (14%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSN 577
               LDL  + I  T+      S   +  L L+ N +   +     N+   L TL L SN
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN 90

Query: 578 SLSGPLPLI---PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPD 634
            L      +    S+LT LD+S N +   L  ++  ++ N   L+ L +G+N L   I  
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYN---LKSLEVGDNDLV-YISH 145

Query: 635 -CWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF 693
             +   + L  L L + + T     +L  L  L +L LR    +     S +    L++ 
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 694 DISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVI 753
           +IS   ++  +       L+ +  LS+            +  L  L+ L+LS N ++ + 
Sbjct: 206 EISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 754 PRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQ 813
              ++ L                                   L+ + L     +  +   
Sbjct: 265 GSMLHELLR---------------------------------LQEIQLVGGQLA-VVEPY 290

Query: 814 V-TNLVGLQTLKLSHNFFSGRIPVNM-GAMKSVEALDFSSNRLQ 855
               L  L+ L +S N  +  +  ++  ++ ++E L   SN L 
Sbjct: 291 AFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.8 bits (223), Expect = 6e-19
 Identities = 61/361 (16%), Positives = 115/361 (31%), Gaps = 86/361 (23%)

Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP--DLNDAAQLETLDLSSNSLSG 581
           +          +P+ +    ++   L+L  N+I   +   +      LE L+L+ N +S 
Sbjct: 16  VLCHRKRFV-AVPEGI---PTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVS- 69

Query: 582 PLPLIP-------SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPD 634
               +         +L TL L SN L   +   +   ++N   L  L++  N +   +  
Sbjct: 70  ---AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSN---LTKLDISENKIVILLDY 122

Query: 635 CWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD 694
            + +   L  L +G+ND       +   L+SL+ L L     +                 
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----------------S 166

Query: 695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754
           I                L G+I+L LR    +         L  LK+L++S       + 
Sbjct: 167 IPTEALSH---------LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 755 RCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV 814
                                                    L  L ++    +  +P   
Sbjct: 218 PNCLYGLN---------------------------------LTSLSITHCNLT-AVPYLA 243

Query: 815 -TNLVGLQTLKLSHNFFSGRIPVNM-GAMKSVEALDFSSNRLQGEIPKNM-VNLEFLEIF 871
             +LV L+ L LS+N  S  I  +M   +  ++ +     +L   +       L +L + 
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVL 301

Query: 872 N 872
           N
Sbjct: 302 N 302

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.3 bits (214), Expect = 8e-18
 Identities = 61/307 (19%), Positives = 101/307 (32%), Gaps = 69/307 (22%)

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
            +             IP+    LDL  N +  TL++   +E  +   L+ L L  N +S 
Sbjct: 15  AVLCHRKRFVAVPEGIPTETRLLDLGKNRIK-TLNQ---DEFASFPHLEELELNENIVS- 69

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690
                           +    F          L +L+ L LR NR            + L
Sbjct: 70  ---------------AVEPGAFNN--------LFNLRTLGLRSNRLKLIPLGVFTGLSNL 106

Query: 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
              DISEN+ V  +  ++ + L  +  L +  N           GL SL+ L L   NLT
Sbjct: 107 TKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

Query: 751 GVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEI 810
            +    +++L G                                 L VL L     +  I
Sbjct: 166 SIPTEALSHLHG---------------------------------LIVLRLRHLNIN-AI 191

Query: 811 PSQV-TNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP----KNMVNL 865
                  L  L+ L++SH  +   +  N     ++ +L  +   L   +P    +++V L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250

Query: 866 EFLEIFN 872
            FL +  
Sbjct: 251 RFLNLSY 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 30/147 (20%)

Query: 113 INPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNL 172
           + P+ L   +L  L +++ +   +                             + +L  L
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVP-------------------------YLAVRHLVYL 250

Query: 173 QFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSG 232
           +FL+L  N +  +          L  L+ + L G  L+           L+ L  L  SG
Sbjct: 251 RFLNLSYNPISTIEGSML---HELLRLQEIQLVGGQLAVVEPYAF--RGLNYLRVLNVSG 305

Query: 233 CLLHHISPLSFANFSSLVTLDISDNQF 259
             L  +    F +  +L TL +  N  
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPL 332

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  156 bits (396), Expect = 7e-41
 Identities = 63/467 (13%), Positives = 151/467 (32%), Gaps = 25/467 (5%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           A+ +  QN    +   ++ +    ++        +++ L LS N L       L   T +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
           + L+LS N L        + L  LR+++L+ N +  E+              +E+L  +N
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLV---------GPSIETLHAAN 108

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHF 466
           N +  +        +   ++ L+ N I+    L  G  S ++YLD+  N ++        
Sbjct: 109 NNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 467 ANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDL 526
           A+   L   +   N +             +L+ + LSS  +         S   + ++ L
Sbjct: 166 ASSDTLEHLNLQYNFI---YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 527 SNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNS---LSGPL 583
            N+ +   I   L +    + + +L  N           +       ++  +   L+G  
Sbjct: 222 RNNKLV-LIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 584 PLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLF 643
               +  T     +       + F    +    +   L  G  + +  +     N +   
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 644 FLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN 703
            +   +  +   +        +   L  +      ++    +   EL          +  
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-E 398

Query: 704 IPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
           +     E+    +L ++       +   +     +++  D+  +  T
Sbjct: 399 LQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  144 bits (365), Expect = 8e-37
 Identities = 69/488 (14%), Positives = 142/488 (29%), Gaps = 77/488 (15%)

Query: 138 IPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS 197
           I     +        ++ +     +     +  N++ LDL                    
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL-------------------- 41

Query: 198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDN 257
                                            SG  L  IS    A F+ L  L++S N
Sbjct: 42  ---------------------------------SGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 258 QFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN 317
              +      +  L  L  LDL+ N  Q      +    S++ L  + N+ S        
Sbjct: 69  VLYE---TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 318 KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLRSVNLS 376
                + + L+ N++        G  + ++ LDL  N +++            L  +NL 
Sbjct: 121 G---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 377 GNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436
            N +  ++   +          L++LDLS+N L   +  +  +   +  + L  N +   
Sbjct: 178 YNFIY-DVKGQVVFAK------LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 437 IPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQ 496
           I  +L    +L + D+  N  +     + F+   ++          +        T P  
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 497 LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
                     +   F   L++     +  LS         +   ++ ++   ++    Q 
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 557 FGQIPDL-NDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNS 615
              I  +        TL+    +L   +     +    +L            L +     
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA--ELDGTLQQAVGQIELQHATEEQ 406

Query: 616 MRLQVLNL 623
             LQ+L  
Sbjct: 407 SPLQLLRA 414

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  141 bits (357), Expect = 8e-36
 Identities = 68/488 (13%), Positives = 142/488 (29%), Gaps = 53/488 (10%)

Query: 118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDL 177
                     ++ +  +         S  N+  L++S      I    +   + L+ L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 178 RPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHH 237
             N L      D      LS L+ LDL+   + +   GP       S+ETL  +   +  
Sbjct: 66  SSNVLYET--LDLE---SLSTLRTLDLNNNYVQELLVGP-------SIETLHAANNNISR 113

Query: 238 ISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG-AVPDAIQNST 296
           +S    +       + +++N+               + +LDL  N        +   +S 
Sbjct: 114 VSC---SRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
           +L+HL+L  N               L+ L LS N+L   +     +   +  + L  N+L
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFA--KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 357 ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQ 416
              I +A +  ++L   +L GN       +         S       ++  T+  L    
Sbjct: 227 VL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF------SKNQRVQTVAKQTVKKLTGQN 279

Query: 417 IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFD 476
                                 L       L  L    + L                   
Sbjct: 280 EEECTVPTLGHYGAYCCE---DLPAPFADRLIALKRKEHALL------------------ 318

Query: 477 ASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIP 536
            SG     + +        + + I            Q  L +   I L+    ++ + + 
Sbjct: 319 -SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

Query: 537 D--RLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPS-SLTTL 593
           +  R    L       +   ++     + +    L  +      +      + + ++   
Sbjct: 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDW 437

Query: 594 DLSSNFLS 601
           D+  +  +
Sbjct: 438 DMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  139 bits (352), Expect = 3e-35
 Identities = 60/371 (16%), Positives = 117/371 (31%), Gaps = 31/371 (8%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
                 ++  LDLS N    I     L     L  LN+S       +   + +LS L+ L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
           DL  NY+  L             ++ L  +  ++S+     +  +     + +  +   +
Sbjct: 86  DLNNNYVQEL--------LVGPSIETLHAANNNISR-----VSCSRGQGKKNIYLANNKI 132

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS 295
             +  L     S +  LD+  N+    +          L  L+L  N     V   +   
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVF- 190

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
             L+ LDLS N   + +   F     + ++SL  N+L   I  +L    +++  DL  N 
Sbjct: 191 AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
                 R F   ++ R   ++   + +   Q  +  +     V             L   
Sbjct: 249 FHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECT-----VPTLGHYGAYCCEDLPAP 302

Query: 416 QIGNFKNLDSLDLSFNNISG----HIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTK 471
                  L   + +  +  G     +       +  R +D        T+ +        
Sbjct: 303 FADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQA 361

Query: 472 LVGFDASGNSL 482
            +  +    +L
Sbjct: 362 KITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 4e-28
 Identities = 64/477 (13%), Positives = 148/477 (31%), Gaps = 78/477 (16%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
            +   +++++L   L +   +  N+  LDLS N +S      L   + L  L++S+N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518
            TL      +L+ L   D + N                +Q + +                
Sbjct: 72  ETLD---LESLSTLRTLDLNNN---------------YVQELLVGP-------------- 99

Query: 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSS 576
             +  L  +N++IS  +     +       + L+ N+I   + D      ++++ LDL  
Sbjct: 100 -SIETLHAANNNIS-RVSCSRGQGKKN---IYLANNKI-TMLRDLDEGCRSRVQYLDLKL 153

Query: 577 NSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW 636
           N +            T++ +                 +S  L+ LNL  N +  ++    
Sbjct: 154 NEI-----------DTVNFAELA-------------ASSDTLEHLNLQYNFIY-DVKG-Q 187

Query: 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS 696
           + ++ L  L L  N     +     + + +  + LR N+    I  +L+    L  FD+ 
Sbjct: 188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 697 ENEFV-GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPR 755
            N F  G +  +  +      + ++                    +    +     +   
Sbjct: 246 GNGFHCGTLRDFFSKNQR---VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 756 CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVT 815
             + L  + ++   +             + ++         + +D     +   I     
Sbjct: 303 FADRLIALKRKEHALLSGQGSET-----ERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 816 NLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
                 TL+        ++     A   ++     +     E+         L++  
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLR 413

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  102 bits (255), Expect = 8e-23
 Identities = 65/397 (16%), Positives = 131/397 (32%), Gaps = 43/397 (10%)

Query: 496 QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ 555
           + +   ++   +         S  ++  LDLS + +S  I    +   +++  LNLS N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNV 69

Query: 556 IFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNS 615
           ++ +  DL   + L TLDL++N +   L     S+ TL  ++N +S              
Sbjct: 70  LY-ETLDLESLSTLRTLDLNNNYVQELLVG--PSIETLHAANNNISRVSCSRGQG----- 121

Query: 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTG-NLPTSLGTLSSLQILHLRGN 674
              + + L NN ++          S + +L L  N+    N      +  +L+ L+L+ N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 675 RFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELC 734
                +   +    +L+  D+S N+    +        +G+  +SLR N+        L 
Sbjct: 180 FIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALR 234

Query: 735 GLASLKILDLSSNNLTGVIPR---------------CINNLAGMAKEVLEVDKFFEDALI 779
              +L+  DL  N       R                +  L G  +E   V         
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 780 VYKKKVVKYPIGYPYYLKVLDLSANYF-------SGEIPSQVTNLVGLQTLKLSHNFFSG 832
             +      P  +   L  L    +         +  +  +  N    + +      +  
Sbjct: 295 CCE----DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 833 RIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLE 869
            I       ++   L+     L  ++         L+
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.6 bits (204), Expect = 1e-16
 Identities = 49/276 (17%), Positives = 91/276 (32%), Gaps = 31/276 (11%)

Query: 588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHL 647
           +      ++ + L   L+    +  N    ++ L+L  N LS         ++ L  L+L
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWN----VKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 648 GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTW 707
             N         L +LS+L+ L L  N         L     +     + N    NI   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN----NISRV 114

Query: 708 IGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGV-IPRCINNLAGMAKE 766
              R  G   + L  N+       +    + ++ LDL  N +  V       +      +
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS-----D 169

Query: 767 VLEVDKFFEDALIVYKKKVVKYPIGYP-YYLKVLDLSANYFSGEIPSQVTNLVGLQTLKL 825
            LE        L +    +           LK LDLS+N  +  +  +  +  G+  + L
Sbjct: 170 TLEH-------LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 826 SHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKN 861
            +N     I   +   +++E  D   N       ++
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 34/290 (11%), Positives = 83/290 (28%), Gaps = 11/290 (3%)

Query: 112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSN 171
            + P       +  + L  N      I + L   +NL + ++   GF      +     N
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKN 261

Query: 172 LQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFS 231
            +   +    +  L  ++    +  +L  +      DL       LI         L   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 232 GCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPD 290
           G     +      N +    +D    Q+   ++++QV       + L+         V +
Sbjct: 322 GSETERLECERE-NQARQREIDALKEQY--RTVIDQVTLRKQAKITLEQKKKALDEQVSN 378

Query: 291 AIQNSTSLQHLDLSRNHFS--SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKS 348
             +    L                 +  +    L  +   Y E+   +        +I+ 
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM--YVEQQSVQNNAIRD 436

Query: 349 LDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV 398
            D+  ++         +  +     +L+    +  + +++      AS +
Sbjct: 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 48/244 (19%)

Query: 632 IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELR 691
           I +   N +      + ++     L +   +  +++ L L GN  S      L   T+L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 692 LFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTG 751
           L ++S N     +       LS +  L L  N        EL    S++ L  ++NN++ 
Sbjct: 62  LLNLSSNVLYETLDLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 752 VIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIP 811
           V                                            K + L+ N  +    
Sbjct: 114 VSCSRGQGK------------------------------------KNIYLANNKITMLRD 137

Query: 812 SQVTNLVGLQTLKLSHNFFSG-RIPVNMGAMKSVEALDFSSNRLQGEIPK--NMVNLEFL 868
                   +Q L L  N            +  ++E L+   N +  ++        L+ L
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTL 196

Query: 869 EIFN 872
           ++ +
Sbjct: 197 DLSS 200

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  144 bits (364), Expect = 2e-37
 Identities = 73/371 (19%), Positives = 125/371 (33%), Gaps = 33/371 (8%)

Query: 113 INPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNL 172
           I+ +L        + +             + +L N   +    +    +    + +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 173 QFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSG 232
           + L+L    +  +    F   ++   ++ L +    +           ++  L  L    
Sbjct: 72  ELLNLNDLQIEEIDTYAF---AYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLER 126

Query: 233 CLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDA 291
             L  +    F N   L TL +S+N      I +       +L  L LS+N         
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNL--ERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184

Query: 292 IQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL 351
           I +   L H ++S N  S+         I +E L  S+N +   + G +     +  L L
Sbjct: 185 IPS---LFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPV--NVELTILKL 233

Query: 352 SFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG 411
             N L             L  V+LS N+L  +I      F       LE L +SNN L  
Sbjct: 234 QHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMY--HPFVKMQR--LERLYISNNRL-V 285

Query: 412 LLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTK 471
            L         L  LDLS N++  H+  +  Q   L  L +  N++  TL  +    L  
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKN 343

Query: 472 LVGFDASGNSL 482
           L     S N  
Sbjct: 344 L---TLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (343), Expect = 1e-34
 Identities = 80/396 (20%), Positives = 146/396 (36%), Gaps = 36/396 (9%)

Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNST--SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS 328
             + VF D+  +     V    ++ T  + + +    +          + F  +E L+L+
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 329 YNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
             +++     +     +I+ L + FN +    P  F+ +  L  + L  N LS  + +  
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR-- 134

Query: 389 DMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLR 448
            +F       L +L +SNN L  +  +      +L +L LS N ++    + L  + SL 
Sbjct: 135 GIFHNTPK--LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLF 189

Query: 449 YLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG 508
           + +VS N L      +  A    +   DAS NS  + VV        +L  + L    + 
Sbjct: 190 HANVSYNLL------STLAIPIAVEELDASHNS--INVVRGPVNV--ELTILKLQHNNL- 238

Query: 509 PQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQ 568
                WLL+   L+ +DLS + +   I       + ++  L +S N++            
Sbjct: 239 -TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296

Query: 569 LETLDLSSNSLSGPLPLIPS--SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
           L+ LDLS N L       P    L  L L  N +  TL        +    L+ L L +N
Sbjct: 297 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKL------STHHTLKNLTLSHN 349

Query: 627 TLSGEIPDCWMNW-SFLFFLHLGENDFTGNLPTSLG 661
                  +        +    + + D    +   L 
Sbjct: 350 DWD---CNSLRALFRNVARPAVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (342), Expect = 2e-34
 Identities = 75/408 (18%), Positives = 136/408 (33%), Gaps = 71/408 (17%)

Query: 194 SHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLD 253
           +        D+     ++         +L++ + + F    +  +      +F  +  L+
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 254 ISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP 313
           ++D Q  +                 + T  F  A         ++Q L +  N      P
Sbjct: 76  LNDLQIEE-----------------IDTYAFAYA--------HTIQKLYMGFNAIRYLPP 110

Query: 314 DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSV 373
             F     L  L L  N+L     G   N   + +L +S N LE      F+    L+++
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

Query: 374 NLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNI 433
            LS N+L+  +   L +  +     L   ++S N L     + +     ++ LD S N+I
Sbjct: 171 QLSSNRLT-HVD--LSLIPS-----LFHANVSYNLL-----STLAIPIAVEELDASHNSI 217

Query: 434 SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTP 493
           +    +       L  L +  NNL          N   LV  D S N             
Sbjct: 218 NV---VRGPVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYN------------- 258

Query: 494 PFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSY 553
             +L+ I               +    L  L +SN+ +     +   + +  +  L+LS+
Sbjct: 259 --ELEKIM----------YHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSH 304

Query: 554 NQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLS 601
           N +     +     +LE L L  NS+         +L  L LS N   
Sbjct: 305 NHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  130 bits (329), Expect = 7e-33
 Identities = 68/439 (15%), Positives = 133/439 (30%), Gaps = 77/439 (17%)

Query: 288 VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
           +   +Q       + +                 + + ++   + ++      L +   ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 348 SLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407
            L+L+  ++E     AF     ++ + +  N +      V           L  L L  N
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-----LTVLVLERN 127

Query: 408 TLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFA 467
            L  L      N   L +L +S NN+      +    +SL+ L +S+N L   +  +   
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP 186

Query: 468 NLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLS 527
           +L      + S N L                                L     +  LD S
Sbjct: 187 SLFHA---NVSYNLL------------------------------STLAIPIAVEELDAS 213

Query: 528 NSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP 587
           ++SI+  +   +   L+    L L +N +      L +   L  +DLS N L        
Sbjct: 214 HNSIN-VVRGPVNVELT---ILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELE------- 261

Query: 588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHL 647
                  +  +                  RL+ L + NN L   +         L  L L
Sbjct: 262 ------KIMYHPFVKM------------QRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 648 GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTW 707
             N    ++  +      L+ L+L  N       + L     L+   +S N++  N    
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRA 358

Query: 708 IGERLSGIILLSLRANQFH 726
           +      +   ++     H
Sbjct: 359 L---FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (319), Expect = 1e-31
 Identities = 78/416 (18%), Positives = 137/416 (32%), Gaps = 75/416 (18%)

Query: 335 SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
            I  +L        + +     +         L + + V    + + +  + +LD F   
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ- 70

Query: 395 ASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVST 454
               +E L+L++  +  + T        +  L + FN I    P     +  L  L +  
Sbjct: 71  ----VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 455 NNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW 514
           N+L+ +L    F N  KL     S N                L+ I              
Sbjct: 127 NDLS-SLPRGIFHNTPKLTTLSMSNN---------------NLERIE----------DDT 160

Query: 515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDL 574
             +   L  L LS++ ++  +   L+ SL      N+SYN +      L     +E LD 
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDLSLIPSLFH---ANVSYNLL----STLAIPIAVEELDA 212

Query: 575 SSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPD 634
           S NS++     +   LT L L  N L+   +  L     N   L  ++L  N L   +  
Sbjct: 213 SHNSINVVRGPVNVELTILKLQHNNLT-DTAWLL-----NYPGLVEVDLSYNELEKIMYH 266

Query: 635 CWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD 694
            ++    L  L++  N     L      + +L++L L  N     +  +      L    
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
           +  N  V                 +L+ +  H           +LK L LS N+  
Sbjct: 325 LDHNSIV-----------------TLKLSTHH-----------TLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (273), Expect = 1e-25
 Identities = 74/459 (16%), Positives = 139/459 (30%), Gaps = 131/459 (28%)

Query: 375 LSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS 434
                +  +   V   F     N  + +   N+T+  L    + +F+ ++ L+L+   I 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 435 GHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPP 494
                +     +++ L +  N +   L  + F N+  L                      
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT--------------------- 120

Query: 495 FQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYN 554
                                        L L  + +S ++P  +  +  ++  L++S N
Sbjct: 121 ----------------------------VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 151

Query: 555 QIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEM 612
            +  +I D        L+ L LSSN L+     +  SL   ++S N LS          +
Sbjct: 152 NL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS---------TL 201

Query: 613 NNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLR 672
              + ++ L+  +N+++  +                                 L IL L+
Sbjct: 202 AIPIAVEELDASHNSIN-VVRG--------------------------PVNVELTILKLQ 234

Query: 673 GNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPE 732
            N  +      L N   L   D+S NE    I      ++  +  L +  N+        
Sbjct: 235 HNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL-NLY 290

Query: 733 LCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGY 792
              + +LK+LDLS N+L   + R                                     
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDR------------------------------ 319

Query: 793 PYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS 831
              L+ L L  N     +         L+ L LSHN + 
Sbjct: 320 ---LENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (268), Expect = 7e-25
 Identities = 74/362 (20%), Positives = 124/362 (34%), Gaps = 60/362 (16%)

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLD 573
           ++ N+   +   NS++   +P  L+ S  Q+  LNL+  QI  +I       A  ++ L 
Sbjct: 42  ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLY 99

Query: 574 LSSNSLSGPLPLIP---SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
           +  N++    P +      LT L L  N LS +L R + +       L  L++ NN L  
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK---LTTLSMSNNNLER 155

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690
              D +   + L  L L  N  T ++   L  + SL   ++  N  S     +L     +
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAV 207

Query: 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
              D S N    +I    G     + +L L+ N         L     L  +DLS N L 
Sbjct: 208 EELDASHN----SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 261

Query: 751 GVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEI 810
            ++      +                                   L+ L +S N     +
Sbjct: 262 KIMYHPFVKMQ---------------------------------RLERLYISNNRLV-AL 287

Query: 811 PSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEI 870
                 +  L+ L LSHN     +  N      +E L    N +          L+ L +
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346

Query: 871 FN 872
            +
Sbjct: 347 SH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 48/331 (14%), Positives = 106/331 (32%), Gaps = 58/331 (17%)

Query: 547 NYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPS---SLTTLDLSSNFLSGT 603
            ++++    ++    D+      + +   ++++      +      +  L+L+   +   
Sbjct: 26  VHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-E 83

Query: 604 LSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTL 663
           +  +     +    +Q L +G N +    P  + N   L  L L  ND +          
Sbjct: 84  IDTYAFAYAHT---IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 664 SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRAN 723
             L  L +  N        + Q  T L+   +S N    ++       +  +   ++  N
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYN 196

Query: 724 QFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKK 783
                    L    +++ LD S N++  V       L                       
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSINVVRGPVNVEL----------------------- 228

Query: 784 KVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNM-GAMK 842
                         +L L  N  + +    + N  GL  + LS+N    +I  +    M+
Sbjct: 229 -------------TILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQ 272

Query: 843 SVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
            +E L  S+NRL   +      +  L++ ++
Sbjct: 273 RLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 57/291 (19%), Positives = 96/291 (32%), Gaps = 30/291 (10%)

Query: 586 IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFL 645
           +       D+  +  +  +      E       +++   N+T+         ++  +  L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 646 HLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIP 705
           +L +         +     ++Q L++  N      P   QN   L +  +  N+   ++P
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 706 TWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAK 765
             I      +  LS+  N              SL+ L LSSN LT V    I +L     
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----- 188

Query: 766 EVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKL 825
               V       L              P  ++ LD S N  +  +   V   V L  LKL
Sbjct: 189 FHANVSYNLLSTL------------AIPIAVEELDASHNSIN-VVRGPV--NVELTILKL 233

Query: 826 SHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP----KNMVNLEFLEIFN 872
            HN  +      +     +  +D S N L+ +I       M  LE L I N
Sbjct: 234 QHNNLT-DTAWLLN-YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISN 281

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 35/219 (15%), Positives = 65/219 (29%), Gaps = 38/219 (17%)

Query: 656 LPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI 715
           + ++L        +H+                   ++     +     +P  + +    +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 716 ILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE 775
            LL+L   Q             +++ L +  N +  + P    N+               
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL------------- 118

Query: 776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLVGLQTLKLSHNFFSGRI 834
                               L VL L  N  S  +P  +  N   L TL +S+N    RI
Sbjct: 119 --------------------LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RI 156

Query: 835 PVNM-GAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
             +   A  S++ L  SSNRL       + +L    +  
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  145 bits (367), Expect = 1e-36
 Identities = 77/364 (21%), Positives = 134/364 (36%), Gaps = 29/364 (7%)

Query: 194 SHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLD 253
           +        D+     ++         +L++ + + F    +  +      +F  +  L+
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 254 ISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSV 312
           ++D Q     I          +  L +  N  +   P   QN   L  L L RN  SS  
Sbjct: 82  LNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 313 PDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRS 372
              F+    L  LS+S N L+     +    TS+++L LS NRL          L H   
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA-- 197

Query: 373 VNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNN 432
            N+S N LS          +   +  +E LD S+N++  +   +      L  L L  NN
Sbjct: 198 -NVSYNLLST--------LAIPIA--VEELDASHNSINVV---RGPVNVELTILKLQHNN 243

Query: 433 ISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWT 492
           ++      L     L  +D+S N L   +  + F  + +L     S N   L  ++    
Sbjct: 244 LT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR--LVALNLYGQ 298

Query: 493 PPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLS 552
           P   L+ + LS   +     +     + L  L L ++SI  T+    + +   +  L LS
Sbjct: 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLS 353

Query: 553 YNQI 556
           +N  
Sbjct: 354 HNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  144 bits (364), Expect = 4e-36
 Identities = 96/576 (16%), Positives = 177/576 (30%), Gaps = 63/576 (10%)

Query: 96  GSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISR 155
           G    Y    R      I+ +L        + +             + +L N   +    
Sbjct: 2   GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKN 60

Query: 156 AGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDG 215
           +    +    + +   ++ L+L    +  +    F   ++   ++ L +    +      
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF---AYAHTIQKLYMGFNAIRYLPPH 117

Query: 216 PLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNL 274
                ++  L  L      L  +    F N   L TL +S+N      I +       +L
Sbjct: 118 VF--QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL--ERIEDDTFQATTSL 173

Query: 275 VFLDLSTNNFQGAVPDA-----------------IQNSTSLQHLDLSRNHFSSSVPDWFN 317
             L LS+N     V  +                 +    +++ LD S N   + V     
Sbjct: 174 QNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI-NVVRG--P 229

Query: 318 KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG 377
             ++L  L L +N L  +    L N   +  +DLS+N LE  +   F +++ L  + +S 
Sbjct: 230 VNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 378 NKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHI 437
           N+    +  +        +  L+ LDLS+N L   +      F  L++L L  N+I    
Sbjct: 288 NR----LVALNLYGQPIPT--LKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV--- 337

Query: 438 PLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKL--------VGFDASGNSLVLKVVSP 489
            L L    +L+ L +S N+ +       F N+ +            D      +    S 
Sbjct: 338 TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESD 397

Query: 490 SWTPPFQLQAIGLSSCFIGPQFPQWLLSQ----NHLIYLDLSNSSISDTIPDRLVKSLSQ 545
                  LQ I L+S     Q  Q   S     N +  L    +           +  ++
Sbjct: 398 KPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAE 457

Query: 546 INYLNLSYNQIFG---------QIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLS 596
           +N L     Q+           Q         L    L  + L+     +    T L   
Sbjct: 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKER 517

Query: 597 SNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEI 632
             F                   + L   N  L  ++
Sbjct: 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQL 553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  128 bits (324), Expect = 4e-31
 Identities = 72/397 (18%), Positives = 131/397 (32%), Gaps = 64/397 (16%)

Query: 288 VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
           +   +Q       + +                 + + ++   + ++      L +   ++
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 348 SLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407
            L+L+  ++E     AF     ++ + +  N +      V           L  L L  N
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-----LTVLVLERN 133

Query: 408 TLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFA 467
            L  L      N   L +L +S NN+      +    +SL+ L +S+N L   +  +   
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP 192

Query: 468 NLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLS 527
           +L      + S N L                                L     +  LD S
Sbjct: 193 SLFHA---NVSYNLL------------------------------STLAIPIAVEELDAS 219

Query: 528 NSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP 587
           ++SI+  +   +   L+    L L +N +      L +   L  +DLS N L      I 
Sbjct: 220 HNSIN-VVRGPVNVELT---ILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEK----IM 270

Query: 588 -------SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWS 640
                    L  L +S+N L   L+ +          L+VL+L +N L   +      + 
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYG----QPIPTLKVLDLSHNHLL-HVERNQPQFD 324

Query: 641 FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
            L  L+L  N     L   L T  +L+ L L  N + 
Sbjct: 325 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (299), Expect = 4e-28
 Identities = 66/376 (17%), Positives = 129/376 (34%), Gaps = 22/376 (5%)

Query: 351 LSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLF 410
             +N    +                    +  +   V   F     N  + +   N+T+ 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 411 GLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLT 470
            L    + +F+ ++ L+L+   I      +     +++ L +  N +   L  + F N+ 
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVP 123

Query: 471 KLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSS 530
            L       N L   +    +    +L  + +S+  +         +   L  L LS++ 
Sbjct: 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 531 ISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSL 590
           ++  +   L+ SL      N+SYN     +  L     +E LD S NS++     +   L
Sbjct: 183 LT-HVDLSLIPSLFH---ANVSYN----LLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234

Query: 591 TTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEN 650
           T L L  N L+   +  L     N   L  ++L  N L   +   ++    L  L++  N
Sbjct: 235 TILKLQHNNLT-DTAWLL-----NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 651 DFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGE 710
                L      + +L++L L  N     +  +      L    +  N    +I T    
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN----SIVTLKLS 342

Query: 711 RLSGIILLSLRANQFH 726
               +  L+L  N + 
Sbjct: 343 THHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (259), Expect = 4e-23
 Identities = 74/362 (20%), Positives = 124/362 (34%), Gaps = 60/362 (16%)

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLD 573
           ++ N+   +   NS++   +P  L+ S  Q+  LNL+  QI  +I       A  ++ L 
Sbjct: 48  ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLY 105

Query: 574 LSSNSLSGPLPLIP---SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
           +  N++    P +      LT L L  N LS +L R + +       L  L++ NN L  
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK---LTTLSMSNNNLER 161

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690
              D +   + L  L L  N  T ++   L  + SL   ++  N  S     +L     +
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAV 213

Query: 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
              D S N    +I    G     + +L L+ N         L     L  +DLS N L 
Sbjct: 214 EELDASHN----SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267

Query: 751 GVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEI 810
            ++      +                                   L+ L +S N     +
Sbjct: 268 KIMYHPFVKMQ---------------------------------RLERLYISNNRLV-AL 293

Query: 811 PSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEI 870
                 +  L+ L LSHN     +  N      +E L    N +          L+ L +
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 352

Query: 871 FN 872
            +
Sbjct: 353 SH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 74.6 bits (183), Expect = 6e-14
 Identities = 48/331 (14%), Positives = 105/331 (31%), Gaps = 58/331 (17%)

Query: 547 NYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPS---SLTTLDLSSNFLSGT 603
            ++++    ++    D+      + +   ++++      +      +  L+L+   +   
Sbjct: 32  VHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-E 89

Query: 604 LSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTL 663
           +  +     +    +Q L +G N +    P  + N   L  L L  ND +          
Sbjct: 90  IDTYAFAYAHT---IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146

Query: 664 SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRAN 723
             L  L +  N        + Q  T L+   +S N     +       +  +   ++  N
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHVDLSLIPSLFHANVSYN 202

Query: 724 QFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKK 783
                    L    +++ LD S N++  V       L                       
Sbjct: 203 LLS-----TLAIPIAVEELDASHNSINVVRGPVNVEL----------------------- 234

Query: 784 KVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNM-GAMK 842
                         +L L  N  + +    + N  GL  + LS+N    +I  +    M+
Sbjct: 235 -------------TILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQ 278

Query: 843 SVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
            +E L  S+NRL   +      +  L++ ++
Sbjct: 279 RLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.3 bits (159), Expect = 5e-11
 Identities = 31/270 (11%), Positives = 78/270 (28%), Gaps = 26/270 (9%)

Query: 603 TLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSF--LFFLHLGENDFTGNLPTSL 660
               + C + N        ++  +  + ++   + + +      +    +         L
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 71

Query: 661 GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSL 720
            +   +++L+L   +       +      ++   +  N     +P  + + +  + +L L
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 130

Query: 721 RANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIV 780
             N               L  L +S+NNL  +          +              L +
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN------------LQL 178

Query: 781 YKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGA 840
              ++    +     L   ++S N  S      +   + ++ L  SHN  +    V    
Sbjct: 179 SSNRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV---VRGPV 230

Query: 841 MKSVEALDFSSNRLQGEIP--KNMVNLEFL 868
              +  L    N L  +     N   L  +
Sbjct: 231 NVELTILKLQHNNLT-DTAWLLNYPGLVEV 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 37/234 (15%), Positives = 76/234 (32%), Gaps = 43/234 (18%)

Query: 642 LFFLHLGENDFTGNLPTSL--GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENE 699
             F  +  +  T ++       TL++ +I+  + +         L +  ++ L ++++ +
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 700 FVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN 759
               I T+       I  L +  N      P     +  L +L L  N+L+ +     +N
Sbjct: 87  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 760 LAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLV 818
                                               L  L +S N     I         
Sbjct: 146 TPK---------------------------------LTTLSMSNNNLE-RIEDDTFQATT 171

Query: 819 GLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
            LQ L+LS N  +    V++  + S+   + S N L   +   +  +E L+  +
Sbjct: 172 SLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPI-AVEELDASH 220

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (351), Expect = 3e-36
 Identities = 56/337 (16%), Positives = 107/337 (31%), Gaps = 33/337 (9%)

Query: 139 PRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSL 198
                       L    +  +      +         D    +            ++ + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS-------AWRQANSNN 57

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258
            +    +G  L  T+D             L      L    P      S L  + I    
Sbjct: 58  PQIETRTGRALKATADLLEDATQP-GRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAG 115

Query: 259 FAD--SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWF 316
             +   ++         L  L L+ N  + A+P +I +   L+ L +      + +P+  
Sbjct: 116 LMELPDTMQQ----FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 317 NKFID---------LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRL 367
                         L+ L L +  ++ S+P S+ NL ++KSL +  + L + +  A   L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228

Query: 368 RHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLD 427
             L  ++L G    +       +F   A   L+ L L + +    L   I     L+ LD
Sbjct: 229 PKLEELDLRGCTALRNYP---PIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 428 LSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSEN 464
           L        +P  + QL +   + V   +L   L ++
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (299), Expect = 2e-29
 Identities = 56/342 (16%), Positives = 107/342 (31%), Gaps = 46/342 (13%)

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRP 179
                +L    +          L   +     + +R         +  N +N Q      
Sbjct: 11  SSGRENLYFQGS-TALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 180 NYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHIS 239
             L     +     +       L+L  V L +    P     L  L+ +      L  + 
Sbjct: 66  RALKAT-ADLLEDATQPGR-VALELRSVPLPQF---PDQAFRLSHLQHMTIDAAGLMEL- 119

Query: 240 PLSFANFSSLVTLDISDNQFAD--SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS-- 295
           P +   F+ L TL ++ N      +SI +    L  L  L +        +P+ + ++  
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIAS----LNRLRELSIRACPELTELPEPLASTDA 175

Query: 296 -------TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKS 348
                   +LQ L L      S +P       +L+ L +  + L  ++  ++ +L  ++ 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233

Query: 349 LDLS-FNRLESKIPRAFKRLRHLRSVNLSGN----KLSQEISQVLDMFSACASNVLESLD 403
           LDL     L +  P  F     L+ + L        L  +I +            LE LD
Sbjct: 234 LDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-------LTQ--LEKLD 283

Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFN---NISGHIPLSLG 442
           L        L + I        + +  +    +  H P++  
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (297), Expect = 4e-29
 Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 17/247 (6%)

Query: 118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDL 177
                 + L+L        Q P     L +L ++ I  AG +  +P  +   + L+ L L
Sbjct: 78  ATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 178 RPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKT-------SDGPLITNSLHSLETLRF 230
             N L  L       ++ L+ L+ L +               +D       L +L++LR 
Sbjct: 135 ARNPLRALPAS----IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 231 SGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPD 290
               +  + P S AN  +L +L I ++    S++   +  L  L  LDL         P 
Sbjct: 191 EWTGIRSL-PASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 291 AIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLD 350
                  L+ L L       ++P   ++   LE L L        +P  +  L +   + 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 351 LSFNRLE 357
           +  +   
Sbjct: 308 VPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 7e-26
 Identities = 57/354 (16%), Positives = 105/354 (29%), Gaps = 61/354 (17%)

Query: 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLS 580
              L    S+      D L     +    + +      +  + N     +    +  +L 
Sbjct: 14  RENLYFQGSTALRPYHDVL-SQWQRHYNADRNRWHSAWRQANSN---NPQIETRTGRALK 69

Query: 581 GPLPLI----PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW 636
               L+          L+L S  L         ++      LQ + +    L  E+PD  
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC--------- 687
             ++ L  L L  N     LP S+ +L+ L+ L +R      ++P  L +          
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 688 TELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
             L+   +       ++P  I   L  +  L +R +       P +  L  L+ LDL   
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGC 239

Query: 748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS 807
                 P      A                                  LK L L      
Sbjct: 240 TALRNYPPIFGGRAP---------------------------------LKRLILKDCSNL 266

Query: 808 GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKN 861
             +P  +  L  L+ L L       R+P  +  + +   +    + LQ ++ ++
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (269), Expect = 2e-25
 Identities = 52/372 (13%), Positives = 111/372 (29%), Gaps = 69/372 (18%)

Query: 334 GSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
           GS      + +  ++L    +           + +   + + +    +   +        
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN------- 54

Query: 394 CASNVLESLDLSNNTLFGLLTN-QIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDV 452
             SN  +    +   L       +        +L+L    +    P    +LS L+++ +
Sbjct: 55  --SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI 111

Query: 453 STNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
               L   L +        L     + N L                             P
Sbjct: 112 DAAGLM-ELPDT-MQQFAGLETLTLARNPLR--------------------------ALP 143

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETL 572
             + S N L  L +        +P+ L  + +   +  L                 L++L
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV---------------NLQSL 188

Query: 573 DLSSNSLSGPLPLIPSS------LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
            L    +      +P+S      L +L + ++ LS      L   +++  +L+ L+L   
Sbjct: 189 RLEWTGIRS----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGC 239

Query: 627 TLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQN 686
           T     P  +   + L  L L +      LP  +  L+ L+ L LRG     ++P  +  
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 687 CTELRLFDISEN 698
                +  +  +
Sbjct: 300 LPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 3e-25
 Identities = 51/389 (13%), Positives = 107/389 (27%), Gaps = 79/389 (20%)

Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
           G+      +S+  ++L    +                         L+      L     
Sbjct: 2   GSSHHHHHHSSGRENLYFQGS-----------------------TALR-PYHDVLSQWQR 37

Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS 405
             + D +      +         + +    +G  L        D+          +L+L 
Sbjct: 38  HYNADRNRWHSAWRQA----NSNNPQIETRTGRAL----KATADLLEDATQPGRVALELR 89

Query: 406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENH 465
           +  L     +Q     +L  + +    +   +P ++ Q + L  L ++ N L   L  + 
Sbjct: 90  SVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS- 145

Query: 466 FANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLD 525
            A+L +L                       +L    L                 +L  L 
Sbjct: 146 IASLNRLRELSIRACP--------------ELTE--LPEPLASTDASGEHQGLVNLQSLR 189

Query: 526 LSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL 585
           L  + I  ++P  +   L  +  L +  + +    P ++   +LE LDL   +     P 
Sbjct: 190 LEWTGIR-SLPASIAN-LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP- 246

Query: 586 IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFL 645
                                           L+ L L + +    +P      + L  L
Sbjct: 247 ------------------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 646 HLGENDFTGNLPTSLGTLSSLQILHLRGN 674
            L        LP+ +  L +  I+ +  +
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 5e-21
 Identities = 68/422 (16%), Positives = 118/422 (27%), Gaps = 114/422 (27%)

Query: 417 IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFD 476
             +    ++L    +         L Q       D    N   +      AN        
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNAD---RNRWHSAWR--QANSNNPQIET 62

Query: 477 ASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL--LSQNHLIYLDLSNSSISDT 534
            +G +L                                L   +Q   + L+L +  +   
Sbjct: 63  RTGRAL--------------------------KATADLLEDATQPGRVALELRSVPLP-Q 95

Query: 535 IPDRLVKSLSQINYLNLSYNQIFGQIPD-LNDAAQLETLDLSSNSLSGPLPLIPSSLTTL 593
            PD+    LS + ++ +    +  ++PD +   A LETL L+ N L      +P+S+ +L
Sbjct: 96  FPDQA-FRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLRA----LPASIASL 149

Query: 594 DLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFT 653
                                  RL+ L++       E+P+   +               
Sbjct: 150 ----------------------NRLRELSIRACPELTELPEPLASTD------------- 174

Query: 654 GNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLS 713
                    L +LQ L L        +P S+ N   L+   I  +     +   I   L 
Sbjct: 175 --ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH-HLP 229

Query: 714 GIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKF 773
            +  L LR       +PP   G A LK L L   +    +P  I+ L             
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ----------- 278

Query: 774 FEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR 833
                                 L+ LDL        +PS +  L     + +  +  +  
Sbjct: 279 ----------------------LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 834 IP 835
             
Sbjct: 317 DQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 27/220 (12%), Positives = 58/220 (26%), Gaps = 42/220 (19%)

Query: 654 GNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLS 713
           G+        S  + L+ +G+         L         D +                +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSN 56

Query: 714 GIILLSLRANQFHGFFPP-ELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK 772
              + +             E         L+L S  L    P     L+           
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS----------- 104

Query: 773 FFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG 832
                                 +L+ + + A     E+P  +    GL+TL L+ N    
Sbjct: 105 ----------------------HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR- 140

Query: 833 RIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
            +P ++ ++  +  L   +     E+P+ + + +      
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 10/148 (6%)

Query: 112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSN 171
             +    GL +L  L L +   +   +P  + +L+NL  L I  +     +   I +L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230

Query: 172 LQFLDLR-PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRF 230
           L+ LDLR    L       FG     + LK L L   D S     PL  + L  LE L  
Sbjct: 231 LEELDLRGCTALRNY-PPIFG---GRAPLKRLILK--DCSNLLTLPLDIHRLTQLEKLDL 284

Query: 231 SGCLLHHISPLSFANFSSLVTLDISDNQ 258
            GC+     P   A   +   + +  + 
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHL 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  139 bits (351), Expect = 3e-35
 Identities = 82/406 (20%), Positives = 149/406 (36%), Gaps = 56/406 (13%)

Query: 247 SSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVP-DAIQNSTSLQHLDLS 304
           + +  +D+S N    + +       L +L FL +        +  +  +  +SL  L L 
Sbjct: 30  AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI--PGSLGNLTSIKSLDLSFNRLESKIPR 362
            N F       FN   +LE L+L+   L G++        LTS++ L L  N ++   P 
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 363 -AFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQI---- 417
             F  +R    ++L+ NK+     + L  F          L LS+ TL  +    +    
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ---GKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 418 -GNF---KNLDSLDLSFNNISGHIP---LSLGQLSSLRYLDVSTN-NLNGTLSENHFANL 469
            GN     ++ +LDLS N     +          + ++ L +S + N+  +    +F + 
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 470 TKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNS 529
                     + +              L    + +  +             L  L L+ +
Sbjct: 265 DNFTFKGLEASGVKT----------CDLSKSKIFA--LLKSVFSHF---TDLEQLTLAQN 309

Query: 530 SISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLIP 587
            I+  I D     L+ +  LNLS N + G I      +  +LE LDLS N +      + 
Sbjct: 310 EIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA----LG 363

Query: 588 -------SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
                   +L  L L +N L  ++   + + + +   LQ + L  N
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTS---LQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  134 bits (338), Expect = 1e-33
 Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 53/407 (13%)

Query: 170 SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLR 229
           +++ ++DL  N +  L    F   S L  L+ L +                 L SL  L+
Sbjct: 30  AHVNYVDLSLNSIAELNETSF---SRLQDLQFLKVEQQTPGLVIRNNTFRG-LSSLIILK 85

Query: 230 FSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAV 288
                   +   +F   ++L  L ++      + +       L +L  L L  NN +   
Sbjct: 86  LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 289 PDAI-QNSTSLQHLDLSRNHFSSSVPDWFNKF--IDLEYLSLSYNELQ--------GSIP 337
           P +   N      LDL+ N   S   +    F       L LS   LQ            
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLR--------HLRSVNLSGNKLSQEISQVLD 389
           G+    TSI +LDLS N  +  + + F             L +    G+       +  D
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 390 --MFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSL 447
              F    ++ +++ DLS + +F LL +   +F +L+ L L+ N I+     +   L+ L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 448 RYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFI 507
             L++S N L G++    F NL KL   D S N                ++A+G    F+
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN---------------HIRALG-DQSFL 368

Query: 508 GPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYN 554
           G       L    L  L L  + +  ++PD +   L+ +  + L  N
Sbjct: 369 G-------LPN--LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (306), Expect = 2e-29
 Identities = 74/372 (19%), Positives = 132/372 (35%), Gaps = 38/372 (10%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
           S   L+ L  L +       +        L +L+ L +    F+ +       L+NL+ L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
            L    L G  +    +   L+ L+ L L   ++ K        N +     L  +   +
Sbjct: 109 TLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPASFFLN-MRRFHVLDLTFNKV 166

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS 295
             I      NF                     +L L ++   D++              +
Sbjct: 167 KSICEEDLLNFQGKHF---------------TLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYL-------------SLSYNELQGSIPGSLGN 342
           TS+  LDLS N F  S+   F   I    +             S  +   +     +   
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 343 L--TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLE 400
           L  + +K+ DLS +++ + +   F     L  + L+ N++++         +      L 
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH-----LL 326

Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
            L+LS N L  + +    N   L+ LDLS+N+I      S   L +L+ L + TN L  +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-S 385

Query: 461 LSENHFANLTKL 472
           + +  F  LT L
Sbjct: 386 VPDGIFDRLTSL 397

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  114 bits (286), Expect = 7e-27
 Identities = 75/417 (17%), Positives = 142/417 (34%), Gaps = 50/417 (11%)

Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
             +  +DLS N +      +F RL+ L+ + +        I    + F   +S  L  L 
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGLSS--LIILK 85

Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNI-SGHIPL-SLGQLSSLRYLDVSTNNLNGTL 461
           L  N    L T       NL+ L L+  N+    +       L+SL  L +  NN+    
Sbjct: 86  LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 462 SENHFANLTKLVGFDASGNSLV---------LKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
             + F N+ +    D + N +           +    +      +    ++  ++G +  
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETL 572
                   +  LDLS +   +++  R   +++     +L  +  +               
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---HTNFK 262

Query: 573 DLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEI 632
           D  + +  G   L  S + T DLS + +   L + + +   +   L+ L L  N ++   
Sbjct: 263 DPDNFTFKG---LEASGVKTCDLSKSKIF-ALLKSVFSHFTD---LEQLTLAQNEIN--- 312

Query: 633 PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL 692
                         + +N F G        L+ L  L+L  N          +N  +L +
Sbjct: 313 -------------KIDDNAFWG--------LTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351

Query: 693 FDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
            D+S N     +       L  +  L+L  NQ           L SL+ + L +N  
Sbjct: 352 LDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (283), Expect = 2e-26
 Identities = 82/459 (17%), Positives = 153/459 (33%), Gaps = 104/459 (22%)

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFN 354
             + ++DLS N  +      F++  DL++L +        I   +   L+S+  L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT 414
           +       AF  L +L  + L+   L                   +   LS N    L  
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNL-------------------DGAVLSGNFFKPL-- 128

Query: 415 NQIGNFKNLDSLDLSFNNISGHIPLSL-GQLSSLRYLDVSTNNLNGTLSENHFANLTKLV 473
                  +L+ L L  NNI    P S    +     LD++ N +  ++ E    N     
Sbjct: 129 ------TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGK- 180

Query: 474 GFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISD 533
                 +  +L++          +    ++  ++G +          +  LDLS +   +
Sbjct: 181 ------HFTLLRL--------SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 534 TIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTL 593
           ++  R   +++     +L  +  +               D  + +  G   L  S + T 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---HTNFKDPDNFTFKG---LEASGVKTC 280

Query: 594 DLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFT 653
           DLS + +   L + + +   +   L+ L L  N ++                 + +N F 
Sbjct: 281 DLSKSKIF-ALLKSVFSHFTD---LEQLTLAQNEIN----------------KIDDNAFW 320

Query: 654 GNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLS 713
           G        L+ L  L+L  N          +N  +L + D+S N               
Sbjct: 321 G--------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-------------- 358

Query: 714 GIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGV 752
              + +L    F G        L +LK L L +N L  V
Sbjct: 359 ---IRALGDQSFLG--------LPNLKELALDTNQLKSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (261), Expect = 9e-24
 Identities = 63/282 (22%), Positives = 104/282 (36%), Gaps = 25/282 (8%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNL--SNLQFLD 176
            L  L  L L  N+ + IQ   F  ++     L+++      I    + N    +   L 
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 177 LRPNYLGGLYVEDFGWVS-----HLSLLKHLDLSGVDLSKTSDGPLITN-SLHSLETLR- 229
           L    L  +     GW         + +  LDLSG    ++         +   +++L  
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 230 ---------FSGCLLHHISPLSFANF--SSLVTLDISDNQFADSSIVNQVL-GLVNLVFL 277
                    F           +F     S + T D+S ++    +++  V     +L  L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQL 304

Query: 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
            L+ N       +A    T L  L+LS+N   S     F     LE L LSYN ++ ++ 
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALG 363

Query: 338 -GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
             S   L ++K L L  N+L+S     F RL  L+ + L  N
Sbjct: 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 68/311 (21%), Positives = 113/311 (36%), Gaps = 28/311 (9%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPR-FLGSLENLMYLNISRAGFVGIIPHQI-GNLSNLQFLD 176
           GL +L  L L+  +  G  +   F   L +L  L +       I P     N+     LD
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160

Query: 177 LRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS------LHSLETLRF 230
           L  N +  +  ED            L LS + L   ++  L            S+ TL  
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219

Query: 231 SGCLLHHISPLSFAN---FSSLVTLDISDNQFADSSIV-NQVLGLVNLVF---------- 276
           SG          F +    + + +L +S++    SS          N  F          
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
            DLS +     +     + T L+ L L++N  +    + F     L  L+LS N L    
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACAS 396
                NL  ++ LDLS+N + +   ++F  L +L+ + L  N+L      + D  ++   
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS--- 396

Query: 397 NVLESLDLSNN 407
             L+ + L  N
Sbjct: 397 --LQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.2 bits (237), Expect = 9e-21
 Identities = 87/477 (18%), Positives = 158/477 (33%), Gaps = 120/477 (25%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPL-SLGQLSSLRYLDVSTNNL 457
           +  +DLS N++  L        ++L  L +        I   +   LSSL  L +  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 458 NGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLS 517
              L    F  L  L     +  +L   V+S ++   F+     L+S             
Sbjct: 92  -LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF---FK----PLTS------------- 130

Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLN----DAAQLETLD 573
              L  L L +++I    P     ++ + + L+L++N++   I + +           L 
Sbjct: 131 ---LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLR 186

Query: 574 LSSNSLSG-----------PLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLN 622
           LSS +L               P   +S+TTLDLS N    ++++   + +  +       
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT------- 239

Query: 623 LGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTL--SSLQILHLRGNRFSGKI 680
                   +I    ++ S+      G  +F      +   L  S ++   L  ++    +
Sbjct: 240 --------KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291

Query: 681 PVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLK 740
                + T+L    +++NE                 +  +  N F G        L  L 
Sbjct: 292 KSVFSHFTDLEQLTLAQNE-----------------INKIDDNAFWG--------LTHLL 326

Query: 741 ILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLD 800
            L+LS N L  +  R   NL                                   L+VLD
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDK---------------------------------LEVLD 353

Query: 801 LSANYFSGEIPSQV-TNLVGLQTLKLSHNFFSGRIPVNM-GAMKSVEALDFSSNRLQ 855
           LS N+    +  Q    L  L+ L L  N     +P  +   + S++ +   +N   
Sbjct: 354 LSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 58/326 (17%), Positives = 113/326 (34%), Gaps = 55/326 (16%)

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
                +  L   +P +P+ +  +DLS N ++  L+    + + +   LQ L +   T   
Sbjct: 14  NAICINRGLHQ-VPELPAHVNYVDLSLNSIA-ELNETSFSRLQD---LQFLKVEQQTPGL 68

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS-LQNCTE 689
            I                 N F G        LSSL IL L  N+F  ++          
Sbjct: 69  VIR---------------NNTFRG--------LSSLIILKLDYNQFL-QLETGAFNGLAN 104

Query: 690 LRLFDISENEF-VGNIPTWIGERLSGIILLSLRANQFHGFFPPEL-CGLASLKILDLSSN 747
           L +  +++       +     + L+ + +L LR N      P      +    +LDL+ N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYP---YYLKVLDLSAN 804
            +  +    + N  G    +L +       +   +  +     G P     +  LDLS N
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDM--NEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 805 YFSGEIPSQVTNLVG---LQTLKLSHNFFSGRIPVNMG------------AMKSVEALDF 849
            F   +  +  + +    +Q+L LS+++  G    +                  V+  D 
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 850 SSNRLQ---GEIPKNMVNLEFLEIFN 872
           S +++      +  +  +LE L +  
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQ 308

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 9/176 (5%)

Query: 112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLG-SLENLMYLNISRAGFVGIIPHQIGNLS 170
           KI   +L   + +     + +F+      F G     +   ++S++    ++     + +
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299

Query: 171 NLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRF 230
           +L+ L L  N +  +    F     L+ L  L+LS   L           +L  LE L  
Sbjct: 300 DLEQLTLAQNEINKIDDNAF---WGLTHLLKLNLSQNFLGSIDSRMF--ENLDKLEVLDL 354

Query: 231 SGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQ 285
           S   +  +   SF    +L  L +  NQ    S+ + +   L +L  + L TN + 
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPWD 408

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  134 bits (340), Expect = 7e-35
 Identities = 57/345 (16%), Positives = 125/345 (36%), Gaps = 31/345 (8%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           A+ +  QN    +   ++ +    ++        +++ L LS N L       L   T +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
           + L+LS N L        + L  LR+++L+ N + +             S  +E+L  +N
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE--------LLVGPS--IETLHAAN 108

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHF 466
           N +  +        +   ++ L+ N I+    L  G  S ++YLD+  N ++        
Sbjct: 109 NNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 467 ANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDL 526
           A+   L   +   N +             +L+ + LSS  +         S   + ++ L
Sbjct: 166 ASSDTLEHLNLQYNFI---YDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISL 221

Query: 527 SNSSISDTIPDRLVKSLSQINYLNLSYNQI-FGQIPDLNDAA-QLETLDLSSNSLSGPLP 584
            N+ +   I   L +    + + +L  N    G + D      +++T+   +        
Sbjct: 222 RNNKLV-LIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 585 LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
               ++ TL             + C ++      +++ LG++   
Sbjct: 280 EEECTVPTLGHYGA--------YCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (333), Expect = 6e-34
 Identities = 54/350 (15%), Positives = 113/350 (32%), Gaps = 44/350 (12%)

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRP 179
                   ++ +  +   +     S  N+  L++S      I    +   + L+ L+L  
Sbjct: 9   GNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 180 NYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHIS 239
           N L      D      LS L+ LDL+   + +            S+ETL  +   +  +S
Sbjct: 68  NVLYET--LDLE---SLSTLRTLDLNNNYVQELL-------VGPSIETLHAANNNISRVS 115

Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLG-LVNLVFLDLSTNNFQG-AVPDAIQNSTS 297
               +       + +++N+   + + +   G    + +LDL  N        +   +S +
Sbjct: 116 C---SRGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 298 LQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE 357
           L+HL+L  N               L+ L LS N+L   +     +   +  + L  N+L 
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFA--KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 358 SKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQI 417
             I +A +  ++L   +L GN                    L      N  +  +    +
Sbjct: 228 L-IEKALRFSQNLEHFDLRGNGFH--------------CGTLRDFFSKNQRVQTVAKQTV 272

Query: 418 GNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFA 467
                 +  + +   +  +       L +     +        L  +H  
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI------ALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (324), Expect = 8e-33
 Identities = 65/336 (19%), Positives = 116/336 (34%), Gaps = 28/336 (8%)

Query: 138 IPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS 197
           I     +        ++ +     +     +  N++ LDL  N L  +   D       +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA---PFT 58

Query: 198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDN 257
            L+ L+LS   L +T D      SL +L TL  +   +  +         S+ TL  ++N
Sbjct: 59  KLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANN 109

Query: 258 QFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWF 316
             +  S             + L+ N             + +Q+LDL  N   + +  +  
Sbjct: 110 NISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 317 NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLS 376
                LE+L+L YN +   + G +     +K+LDLS N+L   +   F+    +  ++L 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222

Query: 377 GNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436
            NKL   I + L          LE  DL  N      T +    KN     ++   +   
Sbjct: 223 NNKLV-LIEKALRFSQN-----LEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQTVK-K 274

Query: 437 IPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKL 472
           +     +  ++  L          L       L  L
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 4e-23
 Identities = 53/261 (20%), Positives = 100/261 (38%), Gaps = 17/261 (6%)

Query: 496 QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ 555
           + +   ++   +         S  ++  LDLS + +S  I    +   +++  LNLS N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNV 69

Query: 556 IFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNS 615
           +  +  DL   + L TLDL++N +   L     S+ TL  ++N +S              
Sbjct: 70  L-YETLDLESLSTLRTLDLNNNYVQELLVG--PSIETLHAANNNISRVSCSRGQG----- 121

Query: 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTG-NLPTSLGTLSSLQILHLRGN 674
              + + L NN ++          S + +L L  N+    N      +  +L+ L+L+ N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 675 RFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELC 734
                +        +L+  D+S N+    +        +G+  +SLR N+        L 
Sbjct: 180 FIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALR 234

Query: 735 GLASLKILDLSSNNLTGVIPR 755
              +L+  DL  N       R
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLR 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 65/313 (20%), Positives = 103/313 (32%), Gaps = 78/313 (24%)

Query: 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSS 576
           N      +++SS+       L +S   +  L+LS N +  QI    L    +LE L+LSS
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSS 67

Query: 577 NSLSGPLPLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDC 635
           N L   L L   S+L TLDL++N++          E+     ++ L+  NN +S  +   
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQ---------ELLVGPSIETLHAANNNIS-RVSC- 116

Query: 636 WMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI 695
                    ++L  N  T       G  S +Q L L+ N                    +
Sbjct: 117 -SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID----------------TV 159

Query: 696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPR 755
           +  E   +           +  L+L+ N  +          A LK LDLSSN L   +  
Sbjct: 160 NFAELAAS--------SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGP 208

Query: 756 CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVT 815
              + AG                                 +  + L  N     I   + 
Sbjct: 209 EFQSAAG---------------------------------VTWISLRNNKLV-LIEKALR 234

Query: 816 NLVGLQTLKLSHN 828
               L+   L  N
Sbjct: 235 FSQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 38/256 (14%), Positives = 83/256 (32%), Gaps = 27/256 (10%)

Query: 614 NSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRG 673
           N  R ++  + +++L   +     +   +  L L  N  +      L   + L++L+L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 674 NRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPEL 733
           N    +    L++ + LR  D++ N     +          I  L    N          
Sbjct: 68  NVLY-ETL-DLESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNIS-RVSCSR 118

Query: 734 CGLASLKILDLSSNNLTGVIPRCINNLAGMAK--------EVLEVDKFFED-----ALIV 780
                 K + L++N +T +        + +          + +   +          L +
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 781 YKKKVVKYPIGYP-YYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMG 839
               +           LK LDLS+N  +  +  +  +  G+  + L +N     I   + 
Sbjct: 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 840 AMKSVEALDFSSNRLQ 855
             +++E  D   N   
Sbjct: 235 FSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 24/243 (9%)

Query: 632 IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELR 691
           I +   N +      + ++     L +   +  +++ L L GN  S      L   T+L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 692 LFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTG 751
           L ++S N     +     E LS +  L L  N        EL    S++ L  ++NN++ 
Sbjct: 62  LLNLSSNVLYETLDL---ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 752 VIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG-EI 810
           V             + +    +  +  I     +     G    ++ LDL  N       
Sbjct: 114 VSCSRGQGK-----KNI----YLANNKI---TMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 811 PSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEI 870
                +   L+ L L +NF    +   +     ++ LD SSN+L   +     +   +  
Sbjct: 162 AELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 871 FNI 873
            ++
Sbjct: 219 ISL 221

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  133 bits (337), Expect = 2e-34
 Identities = 60/314 (19%), Positives = 112/314 (35%), Gaps = 20/314 (6%)

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
           HL  +  S    +  ++P+ L    +   L++       I      NL NL  L L  N 
Sbjct: 32  HLRVVQCSDLGLE--KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 182 LGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPL 241
           +  +    F   + L  L+ L LS   L +     L      +L+ LR     +  +   
Sbjct: 88  ISKISPGAF---APLVKLERLYLSKNQLKE-----LPEKMPKTLQELRVHENEITKVRKS 139

Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH 300
            F   + ++ +++  N    S I N    G+  L ++ ++  N    +P  +    SL  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTE 196

Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
           L L  N  +           +L  L LS+N +     GSL N   ++ L L+ N+L   +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-V 255

Query: 361 PRAFKRLRHLRSVNLSGNKLSQ-EISQVLDMFSACASNVLESLDLSNN--TLFGLLTNQI 417
           P      ++++ V L  N +S    +                + L +N    + +  +  
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

Query: 418 GNFKNLDSLDLSFN 431
                  ++ L   
Sbjct: 316 RCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (301), Expect = 1e-29
 Identities = 65/342 (19%), Positives = 112/342 (32%), Gaps = 60/342 (17%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           +L  +  S    +  VP  +        LDL  N  +      F    +L  L L  N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
               PG+   L  ++ L LS N+L+    +  K L+ LR   +  N+++ ++ +   +F+
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEIT-KVRK--SVFN 142

Query: 393 ACASNVLESLDLSNN--TLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYL 450
                 +  ++L  N     G+        K L  + ++  NI+  IP  L    SL  L
Sbjct: 143 GLNQ--MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTEL 197

Query: 451 DVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQ 510
            +  N +   +       L  L     S N                + A+          
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFN---------------SISAVD--------- 232

Query: 511 FPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI-------FGQIPDL 563
               L +  HL  L L+N+ +   +P  L      I  + L  N I       F      
Sbjct: 233 -NGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 564 NDAAQLETLDLSSNSLSGPLPLIP-------SSLTTLDLSSN 598
              A    + L SN +      I             + L + 
Sbjct: 290 TKKASYSGVSLFSNPVQ--YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (298), Expect = 3e-29
 Identities = 55/273 (20%), Positives = 92/273 (33%), Gaps = 22/273 (8%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
               LK+L  L L  N    I  P     L  L  L +S+     +          LQ L
Sbjct: 71  DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLKEL---PEKMPKTLQEL 126

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
            +  N +  +    F   + L+ +  ++L    L  +         +  L  +R +   +
Sbjct: 127 RVHENEITKVRKSVF---NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQN 294
             I         SL  L +  N+   + +    L GL NL  L LS N+       ++ N
Sbjct: 184 TTIPQ---GLPPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG------SIPGSLGNLTSIKS 348
           +  L+ L L+ N     VP        ++ + L  N +          PG      S   
Sbjct: 239 TPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 349 LDLSFNRLESKI--PRAFKRLRHLRSVNLSGNK 379
           + L  N ++     P  F+ +    +V L   K
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (297), Expect = 4e-29
 Identities = 53/275 (19%), Positives = 94/275 (34%), Gaps = 22/275 (8%)

Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTN 282
               L      +  I    F N  +L TL + +N+   S I       LV L  L LS N
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKN 110

Query: 283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI--PGSL 340
             +           +LQ L +  N  +      FN    +  + L  N L+ S    G+ 
Sbjct: 111 QLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 341 GNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLE 400
             +  +  + ++   + +        L  L    L GNK++ ++           +  L 
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKIT-KVDA--ASLKGLNN--LA 219

Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL--- 457
            L LS N++  +    + N  +L  L L+ N +   +P  L     ++ + +  NN+   
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

Query: 458 --NGTLSENHFANLTKLVGFDASGNSLVLKVVSPS 490
             N      +        G     N +    + PS
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (288), Expect = 6e-28
 Identities = 71/388 (18%), Positives = 122/388 (31%), Gaps = 98/388 (25%)

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
            L+ +  S       VP   +   D   L L  N++     G   NL ++ +L L  N++
Sbjct: 32  HLRVVQCSDLGLEK-VPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 357 ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQ 416
               P AF  L  L  + LS N+L +                     L            
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKE---------------------LPEKM-------- 119

Query: 417 IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL-NGTLSENHFANLTKLVGF 475
               K L  L +  N I+         L+ +  +++ TN L +  +    F  + KL   
Sbjct: 120 ---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 476 DASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTI 535
             +                  +  I           PQ L     L  L L  + I+  +
Sbjct: 177 RIADT---------------NITTI-----------PQGLPP--SLTELHLDGNKIT-KV 207

Query: 536 PDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLS---GPLPLIPSSL 590
               +K L+ +  L LS+N I   + +  L +   L  L L++N L    G L      +
Sbjct: 208 DAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-I 265

Query: 591 TTLDLSSNFLSGTLSRFLCNEMNNSM--RLQVLNLGNNTLS-GEIPDCWMNWSFLFFLHL 647
             + L +N +S   S   C    N+       ++L +N +   EI               
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ-------------- 311

Query: 648 GENDFTGNLPTSLGTLSSLQILHLRGNR 675
                    P++   +     + L   +
Sbjct: 312 ---------PSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.6 bits (241), Expect = 7e-22
 Identities = 63/315 (20%), Positives = 112/315 (35%), Gaps = 44/315 (13%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSN 577
               LDL N+ I+  I D   K+L  ++ L L  N+I  +I         +LE L LS N
Sbjct: 53  DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKN 110

Query: 578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEI--PDC 635
            L      +P +L  L +  N ++  + + + N +N    + V+ LG N L         
Sbjct: 111 QLKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQ---MIVVELGTNPLKSSGIENGA 166

Query: 636 WMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI 695
           +     L ++ + + + T  +P   G   SL  LHL GN+ +     SL+    L    +
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223

Query: 696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPR 755
           S N  +  +          +  L L  N+     P  L     ++++ L +NN++     
Sbjct: 224 SFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS----- 276

Query: 756 CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS-GEIPSQV 814
                       +  + F        K                + L +N     EI    
Sbjct: 277 -----------AIGSNDFCPPGYNTKKAS-----------YSGVSLFSNPVQYWEIQPST 314

Query: 815 -TNLVGLQTLKLSHN 828
              +     ++L + 
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 53/316 (16%), Positives = 96/316 (30%), Gaps = 56/316 (17%)

Query: 568 QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
            L  +  S   L      +P     LDL +N ++  +      +  N   L  L L NN 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKD---GDFKNLKNLHTLILINNK 87

Query: 628 LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC 687
           +S   P  +     L  L+L +N     LP       +LQ L +  N  +          
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGL 144

Query: 688 TELRLFDISENEF-VGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746
            ++ + ++  N      I     + +  +  + +         P  L    SL  L L  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDG 201

Query: 747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYF 806
           N +T V    +  L                                   L  L LS N  
Sbjct: 202 NKITKVDAASLKGL---------------------------------NNLAKLGLSFNSI 228

Query: 807 SGEIPSQV-TNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ---------G 856
           S  + +    N   L+ L L++N    ++P  +   K ++ +   +N +           
Sbjct: 229 S-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 857 EIPKNMVNLEFLEIFN 872
                  +   + +F+
Sbjct: 287 GYNTKKASYSGVSLFS 302

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  130 bits (329), Expect = 2e-33
 Identities = 55/313 (17%), Positives = 113/313 (36%), Gaps = 19/313 (6%)

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
           HL  +  S    +   +P+ +    +   L++       +       L +L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK--AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 182 LGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPL 241
           +  ++ + F   S L  L+ L +S   L +     +  N   SL  LR     +  +   
Sbjct: 90  ISKIHEKAF---SPLRKLQKLYISKNHLVE-----IPPNLPSSLVELRIHDNRIRKVPKG 141

Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHL 301
            F+   ++  +++  N   +S         + L +L +S     G   D      +L  L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNEL 198

Query: 302 DLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361
            L  N   +   +   ++  L  L L +N+++    GSL  L +++ L L  N+L   +P
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VP 257

Query: 362 RAFKRLRHLRSVNLSGNKLSQ-EISQVLDMFSACASNVLESLDLSNN--TLFGLLTNQIG 418
                L+ L+ V L  N +++  ++    +           + L NN    + +      
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 419 NFKNLDSLDLSFN 431
              +  ++     
Sbjct: 318 CVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  114 bits (287), Expect = 8e-28
 Identities = 64/342 (18%), Positives = 110/342 (32%), Gaps = 61/342 (17%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           +L  +  S    + AVP  I  S     LDL  N  S    D F     L  L L  N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
                 +   L  ++ L +S N L    P     L  LR   +  N++  ++ +   +FS
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIR-KVPK--GVFS 144

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFK--NLDSLDLSFNNISGHIPLSLGQLSSLRYL 450
              +  +  +++  N L      + G F    L+ L +S   ++  IP  L    +L  L
Sbjct: 145 GLRN--MNCIEMGGNPL-ENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNEL 198

Query: 451 DVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQ 510
            +  N +   +        +KL       N               Q++ I          
Sbjct: 199 HLDHNKIQ-AIELEDLLRYSKLYRLGLGHN---------------QIRMIE--------- 233

Query: 511 FPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI-------FGQIPDL 563
               L     L  L L N+ +S  +P  L   L  +  + L  N I       F  +   
Sbjct: 234 -NGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 564 NDAAQLETLDLSSNSLSGPLPLIP-------SSLTTLDLSSN 598
              A    + L +N +      +        +    +   + 
Sbjct: 291 VKRAYYNGISLFNNPVP--YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  108 bits (273), Expect = 5e-26
 Identities = 57/274 (20%), Positives = 90/274 (32%), Gaps = 25/274 (9%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
              GL+HL  L L  N    I   +    L  L  L IS+   V I        S+L  L
Sbjct: 73  DFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLVEI---PPNLPSSLVEL 128

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
            +  N +  +    F   S L  +  +++ G  L  +   P   + L  L  LR S   L
Sbjct: 129 RIHDNRIRKVPKGVF---SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQN 294
             I         +L  L +  N+    +I  + L     L  L L  N  +     ++  
Sbjct: 185 TGIPK---DLPETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-------GSLGNLTSIK 347
             +L+ L L  N   S VP        L+ + L  N +   +        G         
Sbjct: 240 LPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 348 SLDLSFNRLESKI--PRAFKRLRHLRSVNLSGNK 379
            + L  N +      P  F+ +    ++     K
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  106 bits (267), Expect = 4e-25
 Identities = 65/365 (17%), Positives = 117/365 (32%), Gaps = 77/365 (21%)

Query: 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
            L  +  S   L+ ++P  +        LDL  N +       FK L+HL ++ L  NK+
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 381 SQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440
           S                      +       L        + L  L +S N++     + 
Sbjct: 91  S---------------------KIHEKAFSPL--------RKLQKLYISKNHLVE---IP 118

Query: 441 LGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAI 500
               SSL  L +  N +   + +  F+ L  +   +  GN L      P      +L  +
Sbjct: 119 PNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 501 GLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQI 560
            +S   +    P+ L     L  L L ++ I   I    +   S++  L L +NQI   I
Sbjct: 178 RISEAKLT-GIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI-RMI 232

Query: 561 PD--LNDAAQLETLDLSSNSLSGPLPLIPS------SLTTLDLSSNFLSGTLSRFLC--N 610
            +  L+    L  L L +N LS     +P+       L  + L +N ++       C   
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLS----RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 611 EMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILH 670
                     ++L NN +               +  +    F          ++    + 
Sbjct: 289 FGVKRAYYNGISLFNNPVP--------------YWEVQPATFRC--------VTDRLAIQ 326

Query: 671 LRGNR 675
               +
Sbjct: 327 FGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.6 bits (241), Expect = 7e-22
 Identities = 62/315 (19%), Positives = 110/315 (34%), Gaps = 45/315 (14%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSN 577
               LDL N+ IS  +     K L  +  L L  N+I  +I +   +   +L+ L +S N
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKN 112

Query: 578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL-SGEIPDCW 636
            L    P +PSSL  L +  N +   + + + + + N   +  + +G N L +       
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRN---MNCIEMGGNPLENSGFEPGA 168

Query: 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPV-SLQNCTELRLFDI 695
            +   L +L + E   T  +P       +L  LHL  N+    I +  L   ++L    +
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPR 755
             N+ +  I       L  +  L L  N+     P  L  L  L+++ L +NN+T V   
Sbjct: 225 GHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 756 CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS-GEIPSQV 814
               +    K                             Y   + L  N     E+    
Sbjct: 283 DFCPVGFGVKRA---------------------------YYNGISLFNNPVPYWEVQPAT 315

Query: 815 -TNLVGLQTLKLSHN 828
              +     ++  + 
Sbjct: 316 FRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 53/297 (17%), Positives = 92/297 (30%), Gaps = 49/297 (16%)

Query: 568 QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
            L  +  S   L      I    T LDL +N +S  L +   ++      L  L L NN 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRK---DDFKGLQHLYALVLVNNK 89

Query: 628 LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC 687
           +S      +     L  L++ +N     +P      SSL  L +  NR            
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGL 146

Query: 688 TELRLFDISENEF-VGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746
             +   ++  N            + L  +  L +   +  G  P +L    +L  L L  
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL--PETLNELHLDH 202

Query: 747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYF 806
           N +  +    +                                      L  L L  N  
Sbjct: 203 NKIQAIELEDLLRY---------------------------------SKLYRLGLGHNQI 229

Query: 807 SGEIPSQV-TNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNM 862
              I +   + L  L+ L L +N  S R+P  +  +K ++ +   +N +  ++  N 
Sbjct: 230 R-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 17/159 (10%)

Query: 713 SGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK 772
               LL L+ N        +  GL  L  L L +N ++ +  +  + L  + K       
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK------- 106

Query: 773 FFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLVGLQTLKLSHN-FF 830
                L + K  +V+ P   P  L  L +  N    ++P  V + L  +  +++  N   
Sbjct: 107 -----LYISKNHLVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 831 SGRIPVNMGAMKSVEALDFSSNRLQGEIPKNM-VNLEFL 868
           +            +  L  S  +L   IPK++   L  L
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNEL 198

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  130 bits (329), Expect = 5e-32
 Identities = 90/489 (18%), Positives = 165/489 (33%), Gaps = 50/489 (10%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           L++S N         I + + L+ L +S N         F    +LEYL LS+N+L   I
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI 84

Query: 337 PGSLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLRSVNLSGNKLSQEISQVLD------ 389
                   ++K LDLSFN  ++  I + F  +  L+ + LS   L +     +       
Sbjct: 85  S--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 390 MFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRY 449
           +         E  D      F   +  I    N +   +   ++     L L  +  +  
Sbjct: 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 450 LDVSTNNLNGTLSENHFANLTKL----VGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSC 505
            +  +  L+          L+ L    +    +    +L++V  +    F +  + L   
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 506 FIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI-FGQIPDLN 564
                F     S   L    + +          + +  S +N  N + +      +   +
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321

Query: 565 DAAQLETLDLSSNSLSGPLPLIPSSLT---TLDLSSNFLSGTLSRFLCNEMNNSMRLQVL 621
             +    LD S+N L+  +      LT   TL L  N L   LS+ +         LQ L
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSK-IAEMTTQMKSLQQL 379

Query: 622 NLGNNTLSGEIPDCWMNW-SFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI 680
           ++  N++S +      +W   L  L++  N  T  +   L     +++L L  N+    I
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SI 436

Query: 681 PVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLK 740
           P  +     L+                          L++ +NQ           L SL+
Sbjct: 437 PKQVVKLEALQE-------------------------LNVASNQLKSVPDGIFDRLTSLQ 471

Query: 741 ILDLSSNNL 749
            + L +N  
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  124 bits (314), Expect = 4e-30
 Identities = 84/506 (16%), Positives = 161/506 (31%), Gaps = 56/506 (11%)

Query: 125 HLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG 184
            L++S N    +       SL  L  L IS      +          L++LDL  N L  
Sbjct: 25  ILNISQNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83

Query: 185 LYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFA 244
           +             LKHLDLS              N +  L+ L  S     H+   S  
Sbjct: 84  I---SCH---PTVNLKHLDLSFNAFDALPICKEFGN-MSQLKFLGLSTT---HLEKSSVL 133

Query: 245 NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS 304
             + L    +               GL +     L            I + +     +L 
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAF 364
            ++    + D    +       L  N    ++        ++ +++ ++N          
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL--------TLNNIETTWNSFIR--ILQL 243

Query: 365 KRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLD 424
                +   ++S  KL  ++      +S  +   L    + ++      +     F N++
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 425 SLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVL 484
             + + +       L   ++S   +LD S N L       +  +LT+L       N    
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMN---- 358

Query: 485 KVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLS 544
                      QL+ +         +  +       L  LD+S +S+S            
Sbjct: 359 -----------QLKEL--------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

Query: 545 QINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLS----GPLPLIPSSLTTLDLSSNFL 600
            +  LN+S N +   I       +++ LDL SN +       + L   +L  L+++SN L
Sbjct: 400 SLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKL--EALQELNVASNQL 456

Query: 601 SGTLSRFLCNEMNNSMRLQVLNLGNN 626
             ++   + + + +   LQ + L  N
Sbjct: 457 K-SVPDGIFDRLTS---LQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  124 bits (313), Expect = 5e-30
 Identities = 101/564 (17%), Positives = 168/564 (29%), Gaps = 118/564 (20%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           +   +D S N     VP  +  S     L++S+N+ S            L  L +S+N +
Sbjct: 1   SEFLVDRSKNGLI-HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
           Q            ++ LDLS N+L   I        +L+ ++LS N              
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAFD----------- 103

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDV 452
                      L     FG ++        L  L LS  ++     L +  L+  + L V
Sbjct: 104 ----------ALPICKEFGNMS-------QLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 453 STNNLNGTLSENHFANLTKL---VGFDASGNSLVLKVVSPSWTPPFQLQAIGL----SSC 505
                          +       + F  +     +  VS       +L  I      + C
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 506 FIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLND 565
                    L +   L  L L+N   +     R+++ +        S + +      L  
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV-----KLQG 261

Query: 566 AAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGN 625
                  D S  SL         +L+   + S+        ++    +N   + + N   
Sbjct: 262 QLDFRDFDYSGTSL--------KALSIHQVVSDVFG-FPQSYIYEIFSN---MNIKNFTV 309

Query: 626 NTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQ 685
           +        C    S    L    N  T  +  + G L+ L+ L L+ N+        L 
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-----ELS 364

Query: 686 NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELC-GLASLKILDL 744
                 +                  ++  +  L +  N          C    SL  L++
Sbjct: 365 KIA--EMTT----------------QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 745 SSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSAN 804
           SSN LT  I RC+                                   P  +KVLDL +N
Sbjct: 407 SSNILTDTIFRCL-----------------------------------PPRIKVLDLHSN 431

Query: 805 YFSGEIPSQVTNLVGLQTLKLSHN 828
                IP QV  L  LQ L ++ N
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  121 bits (306), Expect = 4e-29
 Identities = 98/563 (17%), Positives = 179/563 (31%), Gaps = 99/563 (17%)

Query: 126 LDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGL 185
           +D S N      +P+     +    LNIS+     +    I +LS L+ L +  N +  L
Sbjct: 5   VDRSKNGLI--HVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 186 YVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLS-FA 244
              D         L++LDLS   L K S  P +     +L+ L  S      +     F 
Sbjct: 61  ---DISVFKFNQELEYLDLSHNKLVKISCHPTV-----NLKHLDLSFNAFDALPICKEFG 112

Query: 245 NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN--STSLQHLD 302
           N S L  L +S      SS++      ++ V L L     +   P+ +Q+  + SL  + 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSL---------DLSF 353
            +   F   +        +LE  ++            L  L  +++          ++  
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLL 413
                           +   ++S  KL  ++      +S  +   L    + ++      
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 414 TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLV 473
           +     F N++  + + +       L   ++S   +LD S N L       +  +LT+L 
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELE 351

Query: 474 GFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISD 533
                 N               QL+ +         +  +       L  LD+S +S+S 
Sbjct: 352 TLILQMN---------------QLKEL--------SKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 534 TIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTL 593
                       +  LN+S N +                             +P  +  L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNIL----------------------TDTIFRCLPPRIKVL 426

Query: 594 DLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFT 653
           DL SN +       +  ++     LQ LN+ +N L   +PD                   
Sbjct: 427 DLHSNKIK-----SIPKQVVKLEALQELNVASNQLK-SVPDG------------------ 462

Query: 654 GNLPTSLGTLSSLQILHLRGNRF 676
                    L+SLQ + L  N +
Sbjct: 463 -----IFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (294), Expect = 1e-27
 Identities = 74/400 (18%), Positives = 148/400 (37%), Gaps = 43/400 (10%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
              +L HLDLS+N F  + I +  G++  L +L +S           I +L+  + L + 
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI 238
                    ED   +   +      +   +        +   ++ +LE       L  + 
Sbjct: 148 GETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 239 SPLSFANFSSLVT------LDISDNQFADSSIVN--QVLGLVNLVFLDLSTNNFQG--AV 288
                +  + L T      L +++ +   +S +   Q++    + +  +S    QG    
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265

Query: 289 PDAIQNSTSLQHL---DLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
            D   + TSL+ L    +  + F       +  F ++   + + +  +         ++ 
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325

Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS 405
              LD S N L   +      L  L ++ L  N+L +E+S++ +M +   S  L+ LD+S
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKS--LQQLDIS 382

Query: 406 NNTL--------FGLLT---------NQIGNF------KNLDSLDLSFNNISGHIPLSLG 442
            N++                      N + +         +  LDL  N I   IP  + 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVV 441

Query: 443 QLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
           +L +L+ L+V++N L  ++ +  F  LT L       N  
Sbjct: 442 KLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (289), Expect = 5e-27
 Identities = 87/455 (19%), Positives = 173/455 (38%), Gaps = 38/455 (8%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
            L  L  L +S+N  Q + I  F    + L YL++S    V I  H      NL+ LDL 
Sbjct: 43  SLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLS 98

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI 238
            N    L         ++S LK L LS   L K+S  P+  +   S   L          
Sbjct: 99  FNAFDAL--PICKEFGNMSQLKFLGLSTTHLEKSSVLPI-AHLNISKVLLVLGETYGEKE 155

Query: 239 SPLSFANF--SSLVTLDISDNQF----------ADSSIVNQVLGLVNLVFLDLSTNNFQG 286
            P    +F   SL  +  ++ +F            +  ++ +  ++         +    
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-----SIPGSLG 341
              +   ++ +L +++ + N F   +         + Y S+S  +LQG         S  
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           +L ++    +  +         ++   ++   N + +       +++ M      +    
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-----RMVHMLCPSKISPFLH 328

Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS--GHIPLSLGQLSSLRYLDVSTNNLNG 459
           LD SNN L   +    G+   L++L L  N +     I     Q+ SL+ LD+S N+++ 
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 460 TLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN 519
              +   +    L+  + S N L     +     P +++ + L S  I    P+ ++   
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNIL---TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLE 444

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYN 554
            L  L+++++ +  ++PD +   L+ +  + L  N
Sbjct: 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.8 bits (233), Expect = 5e-20
 Identities = 87/467 (18%), Positives = 166/467 (35%), Gaps = 60/467 (12%)

Query: 421 KNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
           +    L++S N IS      +  LS LR L +S N +   L  + F    +L   D S N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 481 SLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV 540
                          +L  I               ++   L +LDLS ++       +  
Sbjct: 80  ---------------KLVKI----------SCHPTVN---LKHLDLSFNAFDALPICKEF 111

Query: 541 KSLSQINYLNLSYNQI----FGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLS 596
            ++SQ+ +L LS   +       I  LN +  L  L L         P       T  L 
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL--LVLGETYGEKEDPEGLQDFNTESLH 169

Query: 597 SNFLSGTLSRFLCNEMNNSM-RLQVLNLGNNTLSGEIPD------CWMNWSFLFFLHLGE 649
             F +     F+ +    ++  L++ N+       +                L  L L  
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 650 NDFTGNLPTSLGTL---SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI-- 704
            + T N    +  L   +++    +   +  G++     + +   L  +S ++ V ++  
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 705 --PTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAG 762
              ++I E  S + + +   +            ++    LD S+N LT  +     +L  
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 763 MAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLVGLQ 821
           +   +L++++     L    +   +        L+ LD+S N  S +      +    L 
Sbjct: 350 LETLILQMNQL--KELSKIAEMTTQMK-----SLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 822 TLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFL 868
           +L +S N  +  I   +     ++ LD  SN+++  IPK +V LE L
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEAL 446

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 57/354 (16%), Positives = 110/354 (31%), Gaps = 28/354 (7%)

Query: 523 YLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLS 580
            L++S + IS  +    + SLS++  L +S+N+I   +         +LE LDLS N L 
Sbjct: 25  ILNISQNYIS-ELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNKLV 82

Query: 581 GPLPLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW 639
             +   P  +L  LDLS N      +  +C E  N  +L+ L L    L         + 
Sbjct: 83  K-ISCHPTVNLKHLDLSFNAFD---ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 640 SFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENE 699
           +    L +    +          L       L     + K    + + +   + ++  + 
Sbjct: 139 NISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 700 FVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTG-VIPRCIN 758
                             L      +      +L     L  L L++   T     R + 
Sbjct: 197 IKCV--------------LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242

Query: 759 NLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLV 818
            +         +        + ++     Y       L +  + ++ F            
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRD--FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 819 GLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
            +     + +       +    +     LDFS+N L   + +N  +L  LE   
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  127 bits (320), Expect = 3e-31
 Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 12/240 (5%)

Query: 246 FSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS 304
            S+   L++ +N      I       L +L  L L  N+ +     A     SL  L+L 
Sbjct: 74  PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS-FNRLESKIPRA 363
            N  +      F     L  L L  N ++     +   + S+  LDL    +LE     A
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNL 423
           F+ L +L+ +NL    +       +   +      LE L++S N    +         +L
Sbjct: 192 FEGLFNLKYLNLGMCNIKD-----MPNLTPLVG--LEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 424 DSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLV 483
             L +  + +S     +   L+SL  L+++ NNL+ +L  + F  L  LV      N   
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  124 bits (312), Expect = 3e-30
 Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 11/237 (4%)

Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTN 282
           +   L      +  I   +F +   L  L +  N      I      GL +L  L+L  N
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDN 133

Query: 283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS-YNELQGSIPGSLG 341
                   A +  + L+ L L  N   S     FN+   L  L L    +L+    G+  
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
            L ++K L+L    +   +P     L  L  + +SGN    EI      F   +S  L+ 
Sbjct: 194 GLFNLKYLNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFP-EIRP--GSFHGLSS--LKK 246

Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
           L + N+ +  +  N      +L  L+L+ NN+S         L  L  L +  N  N
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  120 bits (302), Expect = 5e-29
 Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 15/259 (5%)

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY 181
               +  +       ++P+  G   N  YLN+       I      +L +L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS--EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 182 LGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPL 241
           +  + V  F   + L+ L  L+L    L+    G      L  L  L      +  I   
Sbjct: 111 IRQIEVGAF---NGLASLNTLELFDNWLTVIPSGAF--EYLSKLRELWLRNNPIESIPSY 165

Query: 242 SFANFSSLVTLDISD-NQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299
           +F    SL+ LD+ +  +     I      GL NL +L+L   N +  +P+ +     L+
Sbjct: 166 AFNRVPSLMRLDLGELKKL--EYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLE 221

Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK 359
            L++S NHF    P  F+    L+ L +  +++      +   L S+  L+L+ N L S 
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 360 IPRAFKRLRHLRSVNLSGN 378
               F  LR+L  ++L  N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  115 bits (290), Expect = 2e-27
 Identities = 64/279 (22%), Positives = 109/279 (39%), Gaps = 38/279 (13%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           +  +       VP  I   ++ ++L+L  N+      D F     LE L L  N ++   
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACAS 396
            G+   L S+ +L+L  N L      AF+ L  LR + L  N +   I      F+   S
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS--YAFNRVPS 172

Query: 397 NVLESLDLS-NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
             L  LDL     L  +         NL  L+L   NI   +P +L  L  L  L++S N
Sbjct: 173 --LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGN 228

Query: 456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
           +    +    F  L+ L       +   + ++  +    F     GL+            
Sbjct: 229 HFP-EIRPGSFHGLSSLKKLWVMNSQ--VSLIERN---AFD----GLA------------ 266

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYN 554
                L+ L+L+++++S ++P  L   L  +  L+L +N
Sbjct: 267 ----SLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.7 bits (241), Expect = 4e-21
 Identities = 54/220 (24%), Positives = 81/220 (36%), Gaps = 12/220 (5%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
           +   L HL  L L  N  + I+       L +L  L +       I       LS L+ L
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGV-DLSKTSDGPLITNSLHSLETLRFSGCL 234
            LR N +  +    F   + +  L  LDL  +  L   S+G      L +L+ L    C 
Sbjct: 153 WLRNNPIESIPSYAF---NRVPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLNLGMCN 207

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQ 293
           +  +   +      L  L++S N F    I      GL +L  L +  +       +A  
Sbjct: 208 IKDMP--NLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263

Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
              SL  L+L+ N+ SS   D F     L  L L +N   
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 58/300 (19%), Positives = 94/300 (31%), Gaps = 76/300 (25%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
              L+L  N +  +  +   +  +L+ L L  N+I      +   L+SL  L++  N L 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518
             +    F  L+KL       N +  + +       F      + S              
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPI--ESIPSYA---FN----RVPS-------------- 172

Query: 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNS 578
             L+ LDL      + I +   + L  + YLNL    I   +P+L     LE L++S N 
Sbjct: 173 --LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNH 229

Query: 579 LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN 638
                 + P S   L                        L+ L + N+ +S         
Sbjct: 230 FPE---IRPGSFHGLS----------------------SLKKLWVMNSQVS--------- 255

Query: 639 WSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698
                   +  N F G        L+SL  L+L  N  S            L    +  N
Sbjct: 256 -------LIERNAFDG--------LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 7e-18
 Identities = 59/290 (20%), Positives = 97/290 (33%), Gaps = 43/290 (14%)

Query: 568 QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
           Q   +  +   LS     IPS+   L+L  N +   +     +   +   L+VL LG N+
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ-MIQA---DTFRHLHHLEVLQLGRNS 110

Query: 628 LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC 687
           +       +   + L  L L +N  T     +   LS L+ L LR N        +    
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 688 TELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
             L   D+ E + +  I     E L  +  L+L          P L  L  L+ L++S N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGN 228

Query: 748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS 807
           +   + P   + L+                                  LK L +  +  S
Sbjct: 229 HFPEIRPGSFHGLSS---------------------------------LKKLWVMNSQVS 255

Query: 808 GEIPSQV-TNLVGLQTLKLSHNFFSGRIPVNM-GAMKSVEALDFSSNRLQ 855
             I       L  L  L L+HN  S  +P ++   ++ +  L    N   
Sbjct: 256 -LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 7e-17
 Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 23/240 (9%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSN 577
           +  YL+L  ++I   I     + L  +  L L  N I  QI     N  A L TL+L  N
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDN 133

Query: 578 SLSGPLPLIPS-------SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGN-NTLS 629
            L+    +IPS        L  L L +N +  ++  +  N + +   L  L+LG    L 
Sbjct: 134 WLT----VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS---LMRLDLGELKKLE 185

Query: 630 GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTE 689
                 +     L +L+LG  +   ++P  L  L  L+ L + GN F    P S    + 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
           L+   +  ++ V  I     + L+ ++ L+L  N            L  L  L L  N  
Sbjct: 244 LKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 39/233 (16%), Positives = 66/233 (28%), Gaps = 66/233 (28%)

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
           L+L EN+       +   L  L++L L  N        +      L   ++ +N      
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW----- 134

Query: 705 PTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA 764
                       L  + +  F          L+ L+ L L +N +  +     N +    
Sbjct: 135 ------------LTVIPSGAFEY--------LSKLRELWLRNNPIESIPSYAFNRVPS-- 172

Query: 765 KEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLVGLQTL 823
                                          L  LDL        I       L  L+ L
Sbjct: 173 -------------------------------LMRLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 824 KLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP----KNMVNLEFLEIFN 872
            L        +P N+  +  +E L+ S N    EI       + +L+ L + N
Sbjct: 202 NLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
           P+L  L  L  L++S N F  I+ P     L +L  L +  +    I  +    L++L  
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           L+L  N L  L  + F   + L  L  L L  
Sbjct: 271 LNLAHNNLSSLPHDLF---TPLRYLVELHLHH 299

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  122 bits (308), Expect = 8e-31
 Identities = 54/266 (20%), Positives = 89/266 (33%), Gaps = 31/266 (11%)

Query: 219 TNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFL 277
           T    S   L      L  +    F   + L  L +S N  +     +Q   G  +L +L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
           DLS N     +         L+HLD   ++                              
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------F 119

Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
               +L ++  LD+S           F  L  L  + ++GN   +      D+F+   + 
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRN- 176

Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
            L  LDLS   L  L      +  +L  L++S NN           L+SL+ LD S N++
Sbjct: 177 -LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 458 NGTLSENHFANL-TKLVGFDASGNSL 482
             T  +    +  + L   + + N  
Sbjct: 236 M-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  122 bits (308), Expect = 9e-31
 Identities = 62/261 (23%), Positives = 96/261 (36%), Gaps = 14/261 (5%)

Query: 125 HLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG 184
            +  +        +P   G   +   L +       +       L+ L  L L  N L  
Sbjct: 11  EIRCNSKGLT--SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 185 LYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLS-F 243
                       + LK+LDLS   +   S        L  LE L F    L  +S  S F
Sbjct: 67  KGCCSQSD-FGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 244 ANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAV-PDAIQNSTSLQHL 301
            +  +L+ LDIS          N +  GL +L  L ++ N+FQ    PD      +L  L
Sbjct: 123 LSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 302 DLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361
           DLS+       P  FN    L+ L++S+N            L S++ LD S N + +   
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 362 RAFKRL-RHLRSVNLSGNKLS 381
           +  +     L  +NL+ N  +
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  118 bits (298), Expect = 2e-29
 Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 9/238 (3%)

Query: 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNIS--RAGFVGIIPHQIGNLSNLQFLDLRP 179
               L+L  N  Q +        L  L  L++S     F G         ++L++LDL  
Sbjct: 29  SATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 180 NYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHIS 239
           N +  +   +F     L  L+HLD    +L + S+  +  + L +L  L  S        
Sbjct: 88  NGVITM-SSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAF 142

Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299
              F   SSL  L ++ N F ++ + +    L NL FLDLS    +   P A  + +SLQ
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNL-TSIKSLDLSFNRL 356
            L++S N+F S     +     L+ L  S N +  S    L +  +S+  L+L+ N  
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  116 bits (292), Expect = 1e-28
 Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 14/241 (5%)

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH--HISPLSFANFSSLVTLDISD 256
              L+L    L     G    + L  L  L  S   L        S    +SL  LD+S 
Sbjct: 30  ATRLELESNKLQSLPHGVF--DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 257 NQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVP-DAIQNSTSLQHLDLSRNHFSSSVPDW 315
           N     ++ +  LGL  L  LD   +N +         +  +L +LD+S  H   +    
Sbjct: 88  NGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 316 FNKFIDLEYLSLSYNELQGSI-PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVN 374
           FN    LE L ++ N  Q +  P     L ++  LDLS  +LE   P AF  L  L+ +N
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 375 LSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNF-KNLDSLDLSFNNI 433
           +S N     +      +    S  L+ LD S N +      ++ +F  +L  L+L+ N+ 
Sbjct: 206 MSHNNFFS-LDT--FPYKCLNS--LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

Query: 434 S 434
           +
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  111 bits (279), Expect = 6e-27
 Identities = 67/284 (23%), Positives = 107/284 (37%), Gaps = 37/284 (13%)

Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL--Q 333
            +  ++     +VP  I   +S   L+L  N   S     F+K   L  LSLS N L  +
Sbjct: 11  EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 334 GSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
           G    S    TS+K LDLSFN + + +   F  L  L  ++   + L Q       +F +
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF--SVFLS 124

Query: 394 CASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHI-PLSLGQLSSLRYLDV 452
             +  L  LD+S+               +L+ L ++ N+   +  P    +L +L +LD+
Sbjct: 125 LRN--LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 453 STNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
           S   L   LS   F +L+ L   + S N                  ++            
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQVLNMSHN---------------NFFSLD----------T 216

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
                 N L  LD S + I  +    L    S + +LNL+ N  
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 71/362 (19%), Positives = 113/362 (31%), Gaps = 121/362 (33%)

Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384
           +  +   L  S+P  +   +S   L+L  N+L+S     F +L  L  ++LS N LS   
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS--- 65

Query: 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQL 444
                                + + FG          +L  LDLSFN +   +  +   L
Sbjct: 66  ----------------FKGCCSQSDFGT--------TSLKYLDLSFNGVI-TMSSNFLGL 100

Query: 445 SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS 504
             L +LD   +NL      + F +L  L                                
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNL-------------------------------- 128

Query: 505 CFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-- 562
                            IYLD+S++       + +   LS +  L ++ N          
Sbjct: 129 -----------------IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 563 LNDAAQLETLDLSSNSLSGPLPLIP-------SSLTTLDLSSNFLSGTLSRFLCNEMNNS 615
             +   L  LDLS   L      +        SSL  L++S N    +L  F    +N+ 
Sbjct: 171 FTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNS- 224

Query: 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNR 675
             LQVL+   N +                    + +            SSL  L+L  N 
Sbjct: 225 --LQVLDYSLNHIM----------------TSKKQELQH-------FPSSLAFLNLTQND 259

Query: 676 FS 677
           F+
Sbjct: 260 FA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 7e-18
 Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 24/248 (9%)

Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSG 581
           +  ++  ++ ++P  +    S    L L  N++   +P    +   QL  L LSSN LS 
Sbjct: 12  IRCNSKGLT-SVPTGI---PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLS- 65

Query: 582 PLPLIP------SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDC 635
                       +SL  LDLS N +    S FL        +L+ L+  ++ L  ++ + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-----GLEQLEHLDFQHSNLK-QMSEF 119

Query: 636 --WMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI-PVSLQNCTELRL 692
             +++   L +L +               LSSL++L + GN F     P        L  
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 693 FDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGV 752
            D+S+ +    +       LS + +L++  N F          L SL++LD S N++   
Sbjct: 180 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 753 IPRCINNL 760
             + + + 
Sbjct: 239 KKQELQHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 10/213 (4%)

Query: 520 HLIYLDLSNSSISD-TIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNS 578
            L  L LS++ +S      +     + + YL+LS+N +     +     QLE LD   ++
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112

Query: 579 LSGPLPLIP----SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNL-GNNTLSGEIP 633
           L             +L  LD+S           + N +++   L+VL + GN+     +P
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSS---LEVLKMAGNSFQENFLP 168

Query: 634 DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF 693
           D +     L FL L +       PT+  +LSSLQ+L++  N F        +    L++ 
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 694 DISENEFVGNIPTWIGERLSGIILLSLRANQFH 726
           D S N  + +    +    S +  L+L  N F 
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 10/176 (5%)

Query: 113 INPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNL 172
           ++ + LGL+ L HLD  +++ + +       SL NL+YL+IS              LS+L
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 173 QFLDLRPN-YLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFS 231
           + L +  N +      + F   + L  L  LDLS   L + S      NSL SL+ L  S
Sbjct: 153 EVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMS 207

Query: 232 GCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLG--LVNLVFLDLSTNNFQ 285
                 +    +   +SL  LD S N     +   Q L     +L FL+L+ N+F 
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 61/313 (19%), Positives = 102/313 (32%), Gaps = 75/313 (23%)

Query: 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
             +  +S  L+     IPSS T L+L SN L  +L        +   +L  L+L +N LS
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPH---GVFDKLTQLTKLSLSSNGLS 65

Query: 630 --GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSL-QN 686
             G         + L +L L  N     + ++   L  L+ L  + +        S+  +
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 687 CTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746
              L   DIS                            F+G        L+SL++L ++ 
Sbjct: 125 LRNLIYLDISHTH-----------------TRVAFNGIFNG--------LSSLEVLKMAG 159

Query: 747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYF 806
           N+         +    +                                L  LDLS    
Sbjct: 160 NSFQENFLP--DIFTELRN------------------------------LTFLDLSQCQL 187

Query: 807 SGEIPSQV-TNLVGLQTLKLSHNFFSGRIPVNM-GAMKSVEALDFSSNRLQGEIPKNMV- 863
             ++      +L  LQ L +SHN F   +       + S++ LD+S N +     K  + 
Sbjct: 188 E-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQ 244

Query: 864 ----NLEFLEIFN 872
               +L FL +  
Sbjct: 245 HFPSSLAFLNLTQ 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  125 bits (315), Expect = 1e-30
 Identities = 57/237 (24%), Positives = 90/237 (37%), Gaps = 11/237 (4%)

Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTN 282
           +   L      +  I   SF +   L  L +S N     +I      GL NL  L+L  N
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDN 122

Query: 283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS-YNELQGSIPGSLG 341
                   A    + L+ L L  N   S     FN+   L  L L     L     G+  
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
            L++++ L+L+   L  +IP     L  L  ++LSGN LS  I      F       L+ 
Sbjct: 183 GLSNLRYLNLAMCNL-REIP-NLTPLIKLDELDLSGNHLS-AIRP--GSFQGLMH--LQK 235

Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
           L +  + +  +  N   N ++L  ++L+ NN++         L  L  + +  N  N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  120 bits (303), Expect = 3e-29
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 11/235 (4%)

Query: 146 ENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLS 205
            N   LN+       I  +   +L +L+ L L  N++  + +  F   + L+ L  L+L 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF---NGLANLNTLELF 120

Query: 206 GVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISD-NQFADSSI 264
              L+   +G      L  L+ L      +  I   +F    SL  LD+ +  +   S I
Sbjct: 121 DNRLTTIPNGAF--VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL--SYI 176

Query: 265 VNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLE 323
                 GL NL +L+L+  N +  +P  +     L  LDLS NH S+  P  F   + L+
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 324 YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
            L +  +++Q     +  NL S+  ++L+ N L       F  L HL  ++L  N
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  117 bits (294), Expect = 5e-28
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 13/235 (5%)

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258
            + L+L    +            L  LE L+ S   +  I   +F   ++L TL++ DN+
Sbjct: 66  TRLLNLHENQIQIIKVNSF--KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 259 FADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSR-NHFSSSVPDWF 316
              ++I N     L  L  L L  N  +     A     SL+ LDL      S      F
Sbjct: 124 L--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 317 NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLS 376
               +L YL+L+   L+  IP +L  L  +  LDLS N L +  P +F+ L HL+ + + 
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 377 GNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFN 431
            +++        D   +     L  ++L++N L  L  +      +L+ + L  N
Sbjct: 240 QSQIQVIERNAFDNLQS-----LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (288), Expect = 3e-27
 Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 13/213 (6%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           N   L+L  N  Q    ++ ++   L+ L LSRNH  +     FN   +L  L L  N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
                G+   L+ +K L L  N +ES    AF R+  LR ++L   K    IS+    F 
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFE 182

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSL---DLSFNNISGHIPLSLGQLSSLRY 449
             ++  L  L+L+   L      +I N   L  L   DLS N++S   P S   L  L+ 
Sbjct: 183 GLSN--LRYLNLAMCNL-----REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 450 LDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
           L +  + +   +  N F NL  LV  + + N+L
Sbjct: 236 LWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (286), Expect = 6e-27
 Identities = 66/279 (23%), Positives = 112/279 (40%), Gaps = 38/279 (13%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           +     N +  VPD I  ST+ + L+L  N       + F     LE L LS N ++   
Sbjct: 48  VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACAS 396
            G+   L ++ +L+L  NRL +    AF  L  L+ + L  N +   I      F+   S
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS--YAFNRIPS 161

Query: 397 NVLESLDLS-NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
             L  LDL     L  +         NL  L+L+  N+   IP +L  L  L  LD+S N
Sbjct: 162 --LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217

Query: 456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
           +L+  +    F  L  L       +   ++V+  +    F      L             
Sbjct: 218 HLS-AIRPGSFQGLMHLQKLWMIQSQ--IQVIERN---AFD----NLQ------------ 255

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYN 554
                L+ ++L++++++  +P  L   L  +  ++L +N
Sbjct: 256 ----SLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 9e-17
 Identities = 55/244 (22%), Positives = 83/244 (34%), Gaps = 33/244 (13%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSN 577
           +   L+L  + I   I     K L  +  L LS N I   I     N  A L TL+L  N
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDN 122

Query: 578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM 637
            L+              + +                    L+ L L NN +       + 
Sbjct: 123 RLT-------------TIPNGAFVYLSK------------LKELWLRNNPIESIPSYAFN 157

Query: 638 NWSFLFFLHLGENDFTGNLPT-SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS 696
               L  L LGE      +   +   LS+L+ L+L       +IP +L    +L   D+S
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLS 215

Query: 697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC 756
            N     I     + L  +  L +  +Q           L SL  ++L+ NNLT +    
Sbjct: 216 GNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 757 INNL 760
              L
Sbjct: 275 FTPL 278

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 12/169 (7%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQI-GNLSNLQFLDL 177
            L  L  L L  N  + I        + +L  L++     +  I       LSNL++L+L
Sbjct: 134 YLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 178 RPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHH 237
               L    + +    + L  L  LDLSG  LS    G      L  L+ L      +  
Sbjct: 193 AMCNL--REIPNL---TPLIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQIQV 245

Query: 238 ISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQ 285
           I   +F N  SLV ++++ N    + + + +   L +L  + L  N + 
Sbjct: 246 IERNAFDNLQSLVEINLAHNNL--TLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 6e-16
 Identities = 57/266 (21%), Positives = 93/266 (34%), Gaps = 25/266 (9%)

Query: 568 QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
           Q   +     +L      I ++   L+L  N +   +       + +   L++L L  N 
Sbjct: 44  QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRH---LEILQLSRNH 99

Query: 628 LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSL-QN 686
           +       +   + L  L L +N  T     +   LS L+ L LR N     IP      
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 687 CTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746
              LR  D+ E + +  I     E LS +  L+L          P L  L  L  LDLS 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSG 216

Query: 747 NNLTGVIPRCINNLAGMAKEVLEVD----KFFEDALIVYKKKVVKYPIGYPYYLKVLDLS 802
           N+L+ + P     L  +  + L +     +  E       +            L  ++L+
Sbjct: 217 NHLSAIRPGSFQGLMHL--QKLWMIQSQIQVIERNAFDNLQS-----------LVEINLA 263

Query: 803 ANYFSGEIPSQVTNLVGLQTLKLSHN 828
            N  +       T L  L+ + L HN
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 60/270 (22%), Positives = 88/270 (32%), Gaps = 46/270 (17%)

Query: 489 PSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINY 548
           P        + + L    I            HL  L LS + I  TI       L+ +N 
Sbjct: 59  PDGIST-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNT 116

Query: 549 LNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLIPS-------SLTTLDLSSNF 599
           L L  N++   IP+      ++L+ L L +N +      IPS       SL  LDL    
Sbjct: 117 LELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIE----SIPSYAFNRIPSLRRLDLGELK 171

Query: 600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTS 659
               +S      ++N   L+ LNL    L  EIP+       L  L L  N  +   P S
Sbjct: 172 RLSYISEGAFEGLSN---LRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGS 226

Query: 660 LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLS 719
              L  LQ L +  ++                   I  N F           L  ++ ++
Sbjct: 227 FQGLMHLQKLWMIQSQIQ----------------VIERNAFDN---------LQSLVEIN 261

Query: 720 LRANQFHGFFPPELCGLASLKILDLSSNNL 749
           L  N            L  L+ + L  N  
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
           +  GL +L +L+L+  + +  +IP                             L  L  L
Sbjct: 180 AFEGLSNLRYLNLAMCNLR--EIPNLT-------------------------PLIKLDEL 212

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
           DL  N+L  +    F     L  L+ L +    +          ++L SL  +  +   L
Sbjct: 213 DLSGNHLSAIRPGSF---QGLMHLQKLWMIQSQIQVIERNAF--DNLQSLVEINLAHNNL 267

Query: 236 HHISPLSFANFSSLVTLDISDN 257
             +    F     L  + +  N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 42/233 (18%), Positives = 68/233 (29%), Gaps = 66/233 (28%)

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
           L+L EN        S   L  L+IL L  N        +      L   ++ +N      
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR----- 123

Query: 705 PTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA 764
                       L ++    F          L+ LK L L +N +  +     N +    
Sbjct: 124 ------------LTTIPNGAFVY--------LSKLKELWLRNNPIESIPSYAFNRIPS-- 161

Query: 765 KEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLVGLQTL 823
                                          L+ LDL        I       L  L+ L
Sbjct: 162 -------------------------------LRRLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 824 KLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP----KNMVNLEFLEIFN 872
            L+       IP N+  +  ++ LD S N L   I     + +++L+ L +  
Sbjct: 191 NLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQ 240

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
           P+L  L  L  LDLS N    I+ P     L +L  L + ++    I  +   NL +L  
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           ++L  N L  L  + F   + L  L+ + L  
Sbjct: 260 INLAHNNLTLLPHDLF---TPLHHLERIHLHH 288

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  124 bits (312), Expect = 3e-30
 Identities = 77/454 (16%), Positives = 139/454 (30%), Gaps = 76/454 (16%)

Query: 208 DLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQ 267
                +   +    L +L +L      +  ++ +     + L  L  + N      +   
Sbjct: 27  AFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSNNITTLDLSQ- 83

Query: 268 VLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSL 327
                NL +L   +N         +   T L +L+   N  +       ++   L YL+ 
Sbjct: 84  ---NTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNC 134

Query: 328 SYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQV 387
           + N L   I   + + T +  LD   N+  +K+         L +++ S NK+++     
Sbjct: 135 ARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE----- 184

Query: 388 LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSL 447
           LD  S      L  L+   N +  L    +     L  LD S N ++    + +  L+ L
Sbjct: 185 LD-VSQNKL--LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE---IDVTPLTQL 235

Query: 448 RYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFI 507
            Y D S N L   L  +  + LT L                        L  I L+    
Sbjct: 236 TYFDCSVNPLT-ELDVSTLSKLTTL---HCIQT---------------DLLEIDLTHN-- 274

Query: 508 GPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAA 567
                        LIY           +    V   +Q+  L+     I     DL+   
Sbjct: 275 -----------TQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGI--TELDLSQNP 318

Query: 568 QLETLDLSSNSLSGPLPL-IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
           +L  L L++  L+  L +   + L +L   +  +         + +     L        
Sbjct: 319 KLVYLYLNNTELTE-LDVSHNTKLKSLSCVNAHIQD------FSSVGKIPALNNNFEAEG 371

Query: 627 TLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSL 660
                  +   N S    +     D  GN     
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  114 bits (287), Expect = 5e-27
 Identities = 69/367 (18%), Positives = 116/367 (31%), Gaps = 52/367 (14%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
           S   L  L  LD   +    +     +  L  L  L  +      +    +   +NL +L
Sbjct: 37  SEEQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYL 90

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLL 235
               N L  L V      + L+ L +L+     L+K     L  +    L  L  +    
Sbjct: 91  ACDSNKLTNLDV------TPLTKLTYLNCDTNKLTK-----LDVSQNPLLTYLNCARN-- 137

Query: 236 HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS 295
             ++ +  ++ + L  LD   N+      V        L  LD S N         +  +
Sbjct: 138 -TLTEIDVSHNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITE---LDVSQN 190

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
             L  L+   N+ +  +    N+ I L +L  S N+L   I   +  LT +   D S N 
Sbjct: 191 KLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNP 244

Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L         +L  L   +     L +             +  L            +   
Sbjct: 245 LTELDVSTLSKLTTL---HCIQTDLLE--------IDLTHNTQLIYFQAEGCRK--IKEL 291

Query: 416 QIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGF 475
            + +   L  LD     I+    L L Q   L YL ++       L+E   ++ TKL   
Sbjct: 292 DVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTE----LTELDVSHNTKLKSL 344

Query: 476 DASGNSL 482
                 +
Sbjct: 345 SCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (283), Expect = 2e-26
 Identities = 65/458 (14%), Positives = 138/458 (30%), Gaps = 81/458 (17%)

Query: 146 ENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLS 205
           +N      +              L+ L  LD   + +      D   +  L+ L  L  +
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-----TDMTGIEKLTGLTKLICT 72

Query: 206 GVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIV 265
             +++      L  +   +L  L         ++ L     + L  L+   N+     + 
Sbjct: 73  SNNITT-----LDLSQNTNLTYLACDSN---KLTNLDVTPLTKLTYLNCDTNKLTKLDV- 123

Query: 266 NQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYL 325
                   L +L+ + N         + ++T L  LD   N   + +         L  L
Sbjct: 124 ---SQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175

Query: 326 SLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ-EI 384
             S+N++       +     +  L+   N +   +     +   L  ++ S NKL++ ++
Sbjct: 176 DCSFNKITEL---DVSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTEIDV 229

Query: 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQL 444
           + +           L   D S N L  L    +     L +L     ++     + L   
Sbjct: 230 TPLTQ---------LTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLE---IDLTHN 274

Query: 445 SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS 504
           + L Y           + E    + T+L   D                    +  + LS 
Sbjct: 275 TQLIYFQAEGCRK---IKELDVTHNTQLYLLDCQAA---------------GITELDLSQ 316

Query: 505 CFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLN 564
                           L+YL L+N+ ++  +    V   +++  L+     I      + 
Sbjct: 317 N-------------PKLVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAHI-QDFSSVG 358

Query: 565 DAAQLETLDLSSNSLSG-PLPLIPSSLTTLDLSSNFLS 601
               L     +       P   + ++  T+ +S + L 
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (281), Expect = 4e-26
 Identities = 78/503 (15%), Positives = 149/503 (29%), Gaps = 122/503 (24%)

Query: 258 QFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN 317
           +   +   N      N      +    Q     + +   +L  LD   +  +        
Sbjct: 4   KAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IE 61

Query: 318 KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG 377
           K   L  L  + N +  ++   L   T++  L    N+L + +      L  L  +N   
Sbjct: 62  KLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDT 115

Query: 378 NKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHI 437
           NKL++             + +L  L+ + NTL  +    + +   L  LD   N      
Sbjct: 116 NKLTK--------LDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT-- 162

Query: 438 PLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQL 497
            L +   + L  LD S N     ++E   +    L   +   N                +
Sbjct: 163 KLDVTPQTQLTTLDCSFNK----ITELDVSQNKLLNRLNCDTN---------------NI 203

Query: 498 QAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIF 557
             + L+                 L +LD S++ ++  I    V  L+Q+ Y + S N + 
Sbjct: 204 TKLDLNQN-------------IQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPL- 245

Query: 558 GQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMR 617
               D++  ++L TL                 L  +DL+ N     L  F          
Sbjct: 246 -TELDVSTLSKLTTLHCIQT-----------DLLEIDLTHN---TQLIYFQAEGCRK--- 287

Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
           ++ L++ +NT              L+ L       T  L   L     L  L+L     +
Sbjct: 288 IKELDVTHNTQ-------------LYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331

Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
            ++ VS  + T+L+                    +                    +  + 
Sbjct: 332 -ELDVS--HNTKLKSLSCVNA------------HIQDF---------------SSVGKIP 361

Query: 738 SLKILDLSSNNLTGVIPRCINNL 760
           +L     +      +    + N 
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNN 384

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 68/446 (15%), Positives = 145/446 (32%), Gaps = 80/446 (17%)

Query: 421 KNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
            N  S   +   +     +S  QL++L  LD   +++   ++      LT L     + N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSN 74

Query: 481 SLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV 540
           ++     +   +    L  +   S  +       +     L YL+   + ++  +    V
Sbjct: 75  NI----TTLDLSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT-KLD---V 123

Query: 541 KSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLDLSSNF 599
                + YLN + N +     D++   QL  LD   N     L + P + LTTLD S N 
Sbjct: 124 SQNPLLTYLNCARNTL--TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181

Query: 600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTS 659
           ++         +++ +  L  LN   N ++ ++         L FL    N  T  +   
Sbjct: 182 ITEL-------DVSQNKLLNRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNKLT-EID-- 228

Query: 660 LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLS 719
           +  L+ L       N  + ++ VS    ++L      + + +  I            L+ 
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EIDL-----THNTQLIY 279

Query: 720 LRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALI 779
            +A         ++     L +LD  +  +T +                           
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL--------------------------- 312

Query: 780 VYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMG 839
                     +     L  L L+    + E+   V++   L++L   +         ++G
Sbjct: 313 ---------DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FS-SVG 358

Query: 840 AMKSVEALDFSSNRLQGEIPKNMVNL 865
            + ++     +  +      + + N 
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNN 384

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 52/321 (16%), Positives = 103/321 (32%), Gaps = 58/321 (18%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
             +     L  LD S+N    + +       + L  LN        +    +     L F
Sbjct: 164 LDVTPQTQLTTLDCSFNKITELDV----SQNKLLNRLNCDTNNITKLD---LNQNIQLTF 216

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL 234
           LD   N L  +       V+ L+ L + D S   L++     L  ++L  L TL      
Sbjct: 217 LDCSSNKLTEID------VTPLTQLTYFDCSVNPLTE-----LDVSTLSKLTTLHCIQT- 264

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
              +  +   + + L+       +               +  LD++ N            
Sbjct: 265 --DLLEIDLTHNTQLIYFQAEGCR--------------KIKELDVTHN------------ 296

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
            T L  LD      +       ++   L YL L+  EL   +   + + T +KSL     
Sbjct: 297 -TQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNA 349

Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT 414
            ++     +  ++  L +   +  +      + L   S   +   + LD   N +   + 
Sbjct: 350 HIQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN--IE 405

Query: 415 NQIGNFKNLDSLDLSFNNISG 435
              G   +  +  +++ N+S 
Sbjct: 406 PGDGGVYDQATNTITWENLST 426

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 9e-09
 Identities = 47/362 (12%), Positives = 95/362 (26%), Gaps = 109/362 (30%)

Query: 511 FPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLE 570
           F  W    N    +  +    +        + L+ +  L+   + I   +  +     L 
Sbjct: 11  FNDWFPDDNFASEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSI-TDMTGIEKLTGLT 67

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
            L  +SN+++       ++LT L   SN L+         ++    +L  LN   N L+ 
Sbjct: 68  KLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLT- 119

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690
                                        +     L  L+   N  +    + + + T+L
Sbjct: 120 --------------------------KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQL 150

Query: 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
              D   N+ +                              ++     L  LD S N +T
Sbjct: 151 TELDCHLNKKIT---------------------------KLDVTPQTQLTTLDCSFNKIT 183

Query: 751 GVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEI 810
            +                                     +     L  L+   N  + ++
Sbjct: 184 EL------------------------------------DVSQNKLLNRLNCDTNNIT-KL 206

Query: 811 PSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEI 870
              +   + L  L  S N  +    +++  +  +   D S N L       +  L  L  
Sbjct: 207 D--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261

Query: 871 FN 872
             
Sbjct: 262 IQ 263

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  124 bits (313), Expect = 1e-29
 Identities = 84/453 (18%), Positives = 139/453 (30%), Gaps = 127/453 (28%)

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
                L++  +  ++ +PD       +  L +  N L  S+P     L +   L++S N+
Sbjct: 40  NGNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPALPPELRT---LEVSGNQ 92

Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L S +P     L  L   +     L    S             L  L +  N L      
Sbjct: 93  LTS-LPVLPPGLLELSIFSNPLTHLPALPSG------------LCKLWIFGNQL------ 133

Query: 416 QIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGF 475
                                +P+    L  L            ++S+N  A+L  L   
Sbjct: 134 -------------------TSLPVLPPGLQEL------------SVSDNQLASLPALPS- 161

Query: 476 DASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTI 535
                                                        L  L   N+ ++ ++
Sbjct: 162 --------------------------------------------ELCKLWAYNNQLT-SL 176

Query: 536 PDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDL 595
           P       S +  L++S NQ+   +P L   ++L  L   +N L+  LP +PS L  L +
Sbjct: 177 PM----LPSGLQELSVSDNQL-ASLPTL--PSELYKLWAYNNRLT-SLPALPSGLKELIV 228

Query: 596 SSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGN 655
           S N L+ +L             L+ L +  N L+  +P        L  L +  N  T  
Sbjct: 229 SGNRLT-SLPVLPSE-------LKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-R 275

Query: 656 LPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI 715
           LP SL  LSS   ++L GN  S +   +L+  T    +      F     +   E  +  
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA-- 333

Query: 716 ILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748
            L    A+        E        +     N 
Sbjct: 334 -LHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 2e-28
 Identities = 73/419 (17%), Positives = 127/419 (30%), Gaps = 71/419 (16%)

Query: 169 LSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETL 228
            +    L++  + L  L           + +  L +   +L+       +      L TL
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP------AHITTLVIPDNNLTS------LPALPPELRTL 86

Query: 229 RFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAV 288
             SG  L  + P+       L                        L  L +  N    ++
Sbjct: 87  EVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLT-SL 136

Query: 289 PDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKS 348
           P        LQ L +S N   +S+P   ++   L  L    N+L  S+P     L     
Sbjct: 137 PVLPPG---LQELSVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQ---E 185

Query: 349 LDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNT 408
           L +S N+L S +P     L  L + N     L    S             L+ L +S N 
Sbjct: 186 LSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSG------------LKELIVSGNR 232

Query: 409 LFGLLTNQIGNFKNLD-----------------SLDLSFNNISGHIPLSLGQLSSLRYLD 451
           L   L       K L                  SL +  N ++  +P SL  LSS   ++
Sbjct: 233 L-TSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290

Query: 452 VSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQF 511
           +  N L+   +      +T           ++   ++ +  P         ++ ++ P  
Sbjct: 291 LEGNPLS-ERTLQALREITSA---PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 512 PQWLLSQNHLIYLD-LSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQL 569
                  +         N+       DRL ++ + I        QI   +  L +   L
Sbjct: 347 EGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFK-AQISSWLAQLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (283), Expect = 5e-26
 Identities = 74/376 (19%), Positives = 130/376 (34%), Gaps = 96/376 (25%)

Query: 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQL 444
           + V+    AC +N    L++  + L   L + +    ++ +L +  NN++  +P    +L
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPEL 83

Query: 445 SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS 504
              R L+VS N L  +L       L +L  F      L                      
Sbjct: 84  ---RTLEVSGNQLT-SLPV-LPPGLLELSIFSNPLTHL---------------------- 116

Query: 505 CFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLN 564
               P  P        L  L +  + ++ ++P         +  L++S NQ+   +P L 
Sbjct: 117 ----PALPS------GLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQL-ASLPAL- 159

Query: 565 DAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLG 624
             ++L  L   +N L+  LP++PS L  L +S N L+      L    +   +L   N  
Sbjct: 160 -PSELCKLWAYNNQLTS-LPMLPSGLQELSVSDNQLA-----SLPTLPSELYKLWAYNNR 212

Query: 625 NNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSL 684
             +L             L  L +  N  T +LP        L+ L + GNR +  +P+  
Sbjct: 213 LTSLPALPSG-------LKELIVSGNRLT-SLPVLPS---ELKELMVSGNRLT-SLPMLP 260

Query: 685 QNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDL 744
                L                            S+  NQ     P  L  L+S   ++L
Sbjct: 261 SGLLSL----------------------------SVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 745 SSNNLTGVIPRCINNL 760
             N L+    + +  +
Sbjct: 292 EGNPLSERTLQALREI 307

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  110 bits (276), Expect = 4e-25
 Identities = 71/408 (17%), Positives = 121/408 (29%), Gaps = 85/408 (20%)

Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
            +    L      L  +        + + TL I DN    +S+         L  L++S 
Sbjct: 39  NNGNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNL--TSLPAL---PPELRTLEVSG 90

Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N    ++P        L        H  +           L  L +  N+L  S+P    
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPP 141

Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ---EISQVLDMFSACASNV 398
            L     L +S N+L S +P     L  L       N+L+      S             
Sbjct: 142 GLQ---ELSVSDNQLAS-LPALPSELCKL---WAYNNQLTSLPMLPSG------------ 182

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
           L+ L +S+N L   L         L + +    ++           S L+ L VS N L 
Sbjct: 183 LQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRLT 234

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518
            +L     + L +L     SGN L                             P      
Sbjct: 235 -SLPV-LPSELKEL---MVSGNRLT--------------------------SLPMLP--- 260

Query: 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNS 578
           + L+ L +  + ++  +P+ L+  LS    +NL  N +      L    ++ +    S  
Sbjct: 261 SGLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPL--SERTLQALREITSAPGYSGP 316

Query: 579 LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
           +        S+           +  L      E   + R  +    +N
Sbjct: 317 IIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 4e-22
 Identities = 68/330 (20%), Positives = 119/330 (36%), Gaps = 54/330 (16%)

Query: 543 LSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSG 602
            +    LN+  + +   +PD    A + TL +  N+L+  LP +P  L TL++S N L+ 
Sbjct: 39  NNGNAVLNVGESGL-TTLPD-CLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT- 94

Query: 603 TLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGT 662
                L       + L + +     L             L  L +  N  T +LP     
Sbjct: 95  ----SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP- 141

Query: 663 LSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA 722
              LQ L +  N+ +  +P       +L       N+      T +    SG+  LS+  
Sbjct: 142 --GLQELSVSDNQLA-SLPALPSELCKL---WAYNNQL-----TSLPMLPSGLQELSVSD 190

Query: 723 NQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYK 782
           NQ     P        L  L   +N LT  +P   + L                 LIV  
Sbjct: 191 NQLA-SLPTLPS---ELYKLWAYNNRLT-SLPALPSGLK---------------ELIVSG 230

Query: 783 KKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMK 842
            ++   P+  P  LK L +S N  +  +P   + L    +L +  N  + R+P ++  + 
Sbjct: 231 NRLTSLPVL-PSELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLS 284

Query: 843 SVEALDFSSNRLQGEIPKNMVNLEFLEIFN 872
           S   ++   N L     + +  +     ++
Sbjct: 285 SETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.3 bits (229), Expect = 2e-19
 Identities = 55/321 (17%), Positives = 98/321 (30%), Gaps = 53/321 (16%)

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPH---------QIGNL- 169
              L  L++S N      +P     L  L   +        +            Q+ +L 
Sbjct: 80  PPELRTLEVSGNQLT--SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP 137

Query: 170 ---SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLE 226
                LQ L +  N L  L           S L  L      L+       +      L+
Sbjct: 138 VLPPGLQELSVSDNQLASLPAL-------PSELCKLWAYNNQLTS------LPMLPSGLQ 184

Query: 227 TLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG 286
            L  S   L  +  L     S L  L   +N+   +S+         L  L +S  N   
Sbjct: 185 ELSVSDNQLASLPTL----PSELYKLWAYNNRL--TSLPAL---PSGLKELIVS-GNRLT 234

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           ++P      + L+ L +S N  +S +P   +    L  LS+  N+L   +P SL +L+S 
Sbjct: 235 SLPVLP---SELKELMVSGNRLTS-LPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
            +++L  N L  +  +A + +      +    +     +                   + 
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP-------RETRALHLAAA 339

Query: 407 NTLFGLLTNQIGNFKNLDSLD 427
           + L      +           
Sbjct: 340 DWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 27/142 (19%)

Query: 732 ELCGLASLKILDLSSNNLTGVIPRCI-NNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPI 790
             C      +L++  + LT  +P C+  ++                 L++    +   P 
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCLPAHIT---------------TLVIPDNNLTSLP- 77

Query: 791 GYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFS 850
             P  L+ L++S N  +  +P     L+ L                       +  L   
Sbjct: 78  ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIF 129

Query: 851 SNRLQGEIPKNMVNLEFLEIFN 872
            N+L   +P     L+ L + +
Sbjct: 130 GNQLT-SLPVLPPGLQELSVSD 150

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  118 bits (297), Expect = 6e-29
 Identities = 58/287 (20%), Positives = 108/287 (37%), Gaps = 30/287 (10%)

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258
           +K LDLS   ++  S+  L      +L+ L  +   ++ I   SF++  SL  LD+S N 
Sbjct: 54  VKSLDLSNNRITYISNSDL--QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 259 FADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAI-QNSTSLQHLDLSRNHFSSSVPD-W 315
              S++ +     L +L FL+L  N ++     ++  + T LQ L +      + +    
Sbjct: 112 L--SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 316 FNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNL 375
           F     LE L +  ++LQ   P SL ++ ++  L L   +    +         +  + L
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 376 SGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG 435
               L                          + L    TN +       ++ ++  ++  
Sbjct: 230 RDTDLD---------------------TFHFSELSTGETNSLIKKFTFRNVKITDESLF- 267

Query: 436 HIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
            +   L Q+S L  L+ S N L  ++ +  F  LT L       N  
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (256), Expect = 1e-23
 Identities = 56/272 (20%), Positives = 93/272 (34%), Gaps = 42/272 (15%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
              +L  L L+ N    I+   F                           L +L+ LDL 
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSS-------------------------LGSLEHLDLS 108

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC-LLHH 237
            NYL  L      W   LS L  L+L G       +  L ++ L  L+ LR         
Sbjct: 109 YNYLSNL---SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH-LTKLQILRVGNMDTFTK 164

Query: 238 ISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNST 296
           I    FA  + L  L+I  +     S   + L  + N+  L L        +   +  ++
Sbjct: 165 IQRKDFAGLTFLEELEIDASDL--QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 297 SLQHLDLSRNH--------FSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKS 348
           S++ L+L             S+   +   K      + ++   L   +   L  ++ +  
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281

Query: 349 LDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
           L+ S N+L+S     F RL  L+ + L  N  
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  100 bits (252), Expect = 3e-23
 Identities = 55/312 (17%), Positives = 101/312 (32%), Gaps = 42/312 (13%)

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
                  S    +S +P        ++ L LS N +       L    ++++L L+ N +
Sbjct: 32  RNGICKGSSGSLNS-IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88

Query: 357 ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQ 416
            +    +F  L  L  ++LS N LS   S      S+     L  L+L  N    L    
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS-----LTFLNLLGNPYKTLGETS 143

Query: 417 I-GNFKNLDSLDLSFNNISGHIPL-SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVG 474
           +  +   L  L +   +    I       L+ L  L++  ++L  +       ++  +  
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSH 202

Query: 475 FDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL-LSQNHLIYLDLSNSSISD 533
                                Q   + L          + L L    L       S +S 
Sbjct: 203 LILHMK---------------QHILL-LEIFVDVTSSVECLELRDTDLDTFHF--SELST 244

Query: 534 TIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP------ 587
              + L+K       + ++   +F  +  LN  + L  L+ S N L      +P      
Sbjct: 245 GETNSLIK-KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS----VPDGIFDR 299

Query: 588 -SSLTTLDLSSN 598
            +SL  + L +N
Sbjct: 300 LTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 8e-17
 Identities = 58/250 (23%), Positives = 101/250 (40%), Gaps = 29/250 (11%)

Query: 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNS 578
           +  LDLSN+ I+  I +  ++    +  L L+ N I   I +   +    LE LDLS N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNY 111

Query: 579 LSGPLPLIP-------SSLTTLDLSSNFLS--GTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
           LS     +        SSLT L+L  N     G  S F     ++  +LQ+L +GN    
Sbjct: 112 LS----NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF-----SHLTKLQILRVGNMDTF 162

Query: 630 GEIPD-CWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT 688
            +I    +   +FL  L +  +D     P SL ++ ++  L L   +    + + +   +
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 689 ELRLFDISENEFVGNIPTWI--GERLSGIILLSLRANQFHG----FFPPELCGLASLKIL 742
            +   ++ + +      + +  GE  S I   + R  +            L  ++ L  L
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282

Query: 743 DLSSNNLTGV 752
           + S N L  V
Sbjct: 283 EFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 59/354 (16%), Positives = 105/354 (29%), Gaps = 95/354 (26%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
           ++SLDLSNN +  +  + +    NL +L L+ N I+     S   L SL +LD+S N L 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL- 112

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518
             LS + F  L+ L   +  GN                 + +G +S F            
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGN---------------PYKTLGETSLFSH---------L 148

Query: 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSS 576
             L  L + N      I  +    L+ +  L +  + +        L     +  L L  
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHM 207

Query: 577 NSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW 636
                 L +     +                          ++ L L +  L        
Sbjct: 208 KQHILLLEIFVDVTS-------------------------SVECLELRDTDLD------- 235

Query: 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS 696
                        ++ +     SL    + + + +       ++   L   + L   + S
Sbjct: 236 ---------TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFS 285

Query: 697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
            N+                 L S+    F          L SL+ + L +N   
Sbjct: 286 RNQ-----------------LKSVPDGIFDR--------LTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 50/285 (17%), Positives = 108/285 (37%), Gaps = 9/285 (3%)

Query: 573 DLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEI 632
             SS SL+     +  ++ +LDLS+N ++  +S    +++   + LQ L L +N ++   
Sbjct: 37  KGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISN---SDLQRCVNLQALVLTSNGINTIE 92

Query: 633 PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSL-QNCTELR 691
            D + +   L  L L  N  +    +    LSSL  L+L GN +      SL  + T+L+
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 692 LFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTG 751
           +  +   +    I       L+ +  L + A+    + P  L  + ++  L L       
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

Query: 752 VIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIP 811
           ++   ++  + +    L                     I      + + ++      ++ 
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF-TFRNVKITDESLF-QVM 270

Query: 812 SQVTNLVGLQTLKLSHNFFSGRIPVNM-GAMKSVEALDFSSNRLQ 855
             +  + GL  L+ S N     +P  +   + S++ +   +N   
Sbjct: 271 KLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  119 bits (299), Expect = 3e-28
 Identities = 98/482 (20%), Positives = 176/482 (36%), Gaps = 40/482 (8%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           L LS N+        I   + L+ L LS N   S     F    DLEYL +S+N LQ +I
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NI 115

Query: 337 PGSLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
                 + S++ LDLSFN  +   + + F  L  L  + LS  K      + LD+     
Sbjct: 116 S--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-----RQLDL--LPV 166

Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFK--NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
           +++  S  L +   + +   +  + +  N   L L F+  S         +++L +L +S
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 454 TNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQ 513
              LN   +          +    +  ++ L+ +  +W    +L             F  
Sbjct: 227 NIKLN-DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF----------FWP 275

Query: 514 WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDA-AQLETL 572
             +   ++  L +    I          +L  +   ++           L    A++   
Sbjct: 276 RPVEYLNIYNLTI-TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 573 DLSSN---SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
            LS +    +    P  PSS T L+ + N  +       C+ +     LQ L L  N L 
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKR---LQTLILQRNGLK 390

Query: 630 --GEIPDCWMNWSFLFFLHLGENDFTGNLPTSL-GTLSSLQILHLRGNRFSGKIPVSLQN 686
              ++     N S L  L +  N    +          S+ +L+L  N  +G +   L  
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP- 449

Query: 687 CTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746
             ++++ D+  N    +IP  +   L  +  L++ +NQ           L SL+ + L  
Sbjct: 450 -PKVKVLDLHNNRI-MSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506

Query: 747 NN 748
           N 
Sbjct: 507 NP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  117 bits (295), Expect = 1e-27
 Identities = 93/499 (18%), Positives = 164/499 (32%), Gaps = 85/499 (17%)

Query: 170 SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLR 229
              + L L  N +  L + D    S LS L+ L LS   +        +      LE L 
Sbjct: 52  PRTKALSLSQNSISELRMPDI---SFLSELRVLRLSHNRIRSLDFH--VFLFNQDLEYLD 106

Query: 230 FSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVP 289
            S   L +   +S    +SL  LD+S N F    +  +   L  L FL LS   F+    
Sbjct: 107 VSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 290 DAIQN--------------------------STSLQHLDLSRN-HFSSSVPDWFNKFIDL 322
             + +                          +T++ HL    N  FS  V    N    L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 323 E--YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRL-----RHLRSVNL 375
           +   + L+    Q  +            L+++   +E+    + K       R +  +N+
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 376 SGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG 435
               +++ I +    +S  A   L    + N             F  ++   LS ++   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 436 HIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPF 495
              +     SS  +L+ + N           + L +L       N               
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRN--------------- 387

Query: 496 QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ 555
            L+           +      + + L  LD+S +S++    DR       I  LNLS N 
Sbjct: 388 GLKNF--------FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 556 I----FGQIPDLNDAAQLETLDLSSNSLS----GPLPLIPSSLTTLDLSSNFLSGTLSRF 607
           +    F  +P      +++ LDL +N +         L   +L  L+++SN L  ++   
Sbjct: 440 LTGSVFRCLP-----PKVKVLDLHNNRIMSIPKDVTHL--QALQELNVASNQLK-SVPD- 490

Query: 608 LCNEMNNSMRLQVLNLGNN 626
                +    LQ + L +N
Sbjct: 491 --GVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (280), Expect = 8e-26
 Identities = 94/519 (18%), Positives = 170/519 (32%), Gaps = 93/519 (17%)

Query: 168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLET 227
            LS L+ L L  N +  L    F        L++LD+S   L   S  P+      SL  
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVF---LFNQDLEYLDVSHNRLQNISCCPM-----ASLRH 125

Query: 228 LRFSGCLLHHISPLS-FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG 286
           L  S      +     F N + L  L +S  +F    ++      ++ + LDL + + +G
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 287 AVPDAIQN-STSLQHLDLSRN-HFSSSVPDWFNKFIDLE--YLSLSYNELQGSIPGSLGN 342
              +++Q  +T++ HL    N  FS  V    N    L+   + L+    Q  +      
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 343 LTSIKSLDLSFNRLESKIPRAFKRL-----RHLRSVNLSGNKLSQEISQVLDMFSACASN 397
                 L+++   +E+    + K       R +  +N+    +++ I +    +S  A  
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
            L    + N             F  ++   LS ++      +     SS  +L+ + N  
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 458 NGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLS 517
                    + L +L       N                L+           +      +
Sbjct: 366 -TDSVFQGCSTLKRLQTLILQRN---------------GLKNF--------FKVALMTKN 401

Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSN 577
            + L  LD+S +S++    DR       I  LNLS N +                     
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML--------------------- 440

Query: 578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM 637
                   +P  +  LDL +N +       +  ++ +   LQ LN+ +N L   +PD   
Sbjct: 441 -TGSVFRCLPPKVKVLDLHNNRIMS-----IPKDVTHLQALQELNVASNQLK-SVPD--- 490

Query: 638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF 676
                                    L+SLQ + L  N +
Sbjct: 491 --------------------GVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (280), Expect = 1e-25
 Identities = 74/399 (18%), Positives = 140/399 (35%), Gaps = 49/399 (12%)

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRP 179
           +  L HLDLS+NDF  + + +  G+L  L +L +S A F      +  +L  +  L L  
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF------RQLDLLPVAHLHLSC 173

Query: 180 NYLG-GLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI 238
             L    Y    G    L +     L  V    +     +  S+++L  L+ S   L+  
Sbjct: 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233

Query: 239 SPLSFANF-------SSLVTLDISDNQFADSSIVN--QVLGLVNLVFLDLSTNNFQGAVP 289
           +      F        +L+ + +   +      V   Q      + +L++        + 
Sbjct: 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293

Query: 290 DAIQNSTSLQH-----LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLT 344
                 +           +    F  S    ++ F ++    LS ++          + +
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 345 SIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS------------ 392
           S   L+ + N     + +    L+ L+++ L  N L +   +V  M              
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSL 412

Query: 393 -----------ACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL 441
                         +  +  L+LS+N L G +   +     +  LDL  N I   IP  +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV 469

Query: 442 GQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
             L +L+ L+V++N L  ++ +  F  LT L       N
Sbjct: 470 THLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  109 bits (274), Expect = 5e-25
 Identities = 99/559 (17%), Positives = 183/559 (32%), Gaps = 116/559 (20%)

Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
            +D S  N    VP  +      + L LS+N  S       +   +L  L LS+N ++  
Sbjct: 35  MVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91

Query: 336 IPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
                     ++ LD+S NRL++ I      +  LR ++LS N                 
Sbjct: 92  DFHVFLFNQDLEYLDVSHNRLQN-IS--CCPMASLRHLDLSFNDFD-------------- 134

Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
                   L     F       GN   L  L LS         L L  ++ L    +  +
Sbjct: 135 -------VLPVCKEF-------GNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLD 177

Query: 456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
            ++  +      +L          N+ VL +V         L ++ ++         Q  
Sbjct: 178 LVSYHIKGGETESLQIP-------NTTVLHLVFHPN----SLFSVQVNMSVNALGHLQLS 226

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLS 575
             + +        + +S+      + +++ + ++  ++     ++        +E L++ 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVT-LQHIETTWKCSV-KLFQFFWPRPVEYLNIY 284

Query: 576 SNSLSGPLPLIPSSLTTLDLSSNF---LSGTLSRFLCNEMNNSM-RLQVLNLGNNTLSGE 631
           + +++  +     + +   L S     +   +  F    + +    + +  L  +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 632 IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS--LQNCTE 689
              C  + S   FL+  +N FT ++     TL  LQ L L+ N       V+   +N + 
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404

Query: 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
           L   D+S N                              +        S+ +L+LSSN L
Sbjct: 405 LETLDVSLNSLN------------------------SHAYDRTCAWAESILVLNLSSNML 440

Query: 750 TGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE 809
           TG + RC+                                   P  +KVLDL  N     
Sbjct: 441 TGSVFRCL-----------------------------------PPKVKVLDLHNNRIM-S 464

Query: 810 IPSQVTNLVGLQTLKLSHN 828
           IP  VT+L  LQ L ++ N
Sbjct: 465 IPKDVTHLQALQELNVASN 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 63/357 (17%), Positives = 113/357 (31%), Gaps = 34/357 (9%)

Query: 523 YLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLS 580
            L LS +SIS  +    +  LS++  L LS+N+I   +          LE LD+S N L 
Sbjct: 56  ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 581 GPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWS 640
                  +SL  LDLS N         +C E  N  +L  L L              +  
Sbjct: 114 NISCCPMASLRHLDLSFNDFD---VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 641 -FLFFLHLGENDFTGNLPTSLGTL--SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE 697
                L L      G    SL     + L ++    + FS ++ +S+     L+L +I  
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 698 NEF-VGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC 756
           N+     + T++ E   G  LL++        +   +          +   N+  +    
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 757 INNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTN 816
             +          +                         L +  +    F     +  + 
Sbjct: 291 RIDREEFTYSETALK-----------------------SLMIEHVKNQVFLFSKEALYSV 327

Query: 817 LVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
              +    LS +       V   +  S   L+F+ N     + +    L+ L+   +
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.9 bits (158), Expect = 6e-11
 Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 9/204 (4%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
               +    LS +D   I +     S  +  +LN ++  F   +      L  LQ L L+
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI 238
            N L   + +      ++S L+ LD+S   L+  +          S+  L  S  +L   
Sbjct: 386 RNGLKNFF-KVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWAESILVLNLSSNMLTGS 443

Query: 239 SPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSL 298
                     +  LD+ +N+    SI   V  L  L  L++++N  +          TSL
Sbjct: 444 VFRCLP--PKVKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499

Query: 299 QHLDLSRNHFSSSVPD--WFNKFI 320
           Q++ L  N +  + P   + +++I
Sbjct: 500 QYIWLHDNPWDCTCPGIRYLSEWI 523

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  114 bits (287), Expect = 4e-28
 Identities = 51/211 (24%), Positives = 76/211 (36%), Gaps = 9/211 (4%)

Query: 170 SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLR 229
           +  Q + L  N +  +    F        L  L L    L++          L  LE L 
Sbjct: 32  AASQRIFLHGNRISHVPAASF---RACRNLTILWLHSNVLARIDAAAF--TGLALLEQLD 86

Query: 230 FSG-CLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGA 287
            S    L  + P +F     L TL +         +   +  GL  L +L L  N  Q  
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 288 VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
             D  ++  +L HL L  N  SS     F     L+ L L  N +    P +  +L  + 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 348 SLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
           +L L  N L +    A   LR L+ + L+ N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  110 bits (278), Expect = 4e-27
 Identities = 54/210 (25%), Positives = 82/210 (39%), Gaps = 9/210 (4%)

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258
            + + L G  +S          +  +L  L     +L  I   +F   + L  LD+SDN 
Sbjct: 34  SQRIFLHGNRISHVPAASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 259 FADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN 317
               S+      GL  L  L L     Q   P   +   +LQ+L L  N   +   D F 
Sbjct: 92  QL-RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 318 KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG 377
              +L +L L  N +      +   L S+  L L  NR+    P AF+ L  L ++ L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 378 NKLSQEISQVLDMFSACASNVLESLDLSNN 407
           N LS   ++ L    A     L+ L L++N
Sbjct: 211 NNLSALPTEALAPLRA-----LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.6 bits (241), Expect = 4e-22
 Identities = 47/256 (18%), Positives = 80/256 (31%), Gaps = 36/256 (14%)

Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK 359
                +    + VP         + + L  N +      S     ++  L L  N L   
Sbjct: 15  TTSCPQQGLQA-VPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 360 IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGN 419
              AF  L  L  ++LS N   + +      F       L +L L    L  L       
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDP--ATFHGLGR--LHTLHLDRCGLQELGPGLFRG 127

Query: 420 FKNLDSLDLSFNNISGHIP-LSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
              L  L L  N +   +P  +   L +L +L +  N ++ ++ E  F  L  L      
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLH 185

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDR 538
            N               ++  +     F              L+ L L  +++S  +P  
Sbjct: 186 QN---------------RVAHVH-PHAFRD---------LGRLMTLYLFANNLS-ALPTE 219

Query: 539 LVKSLSQINYLNLSYN 554
            +  L  + YL L+ N
Sbjct: 220 ALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 49/237 (20%), Positives = 81/237 (34%), Gaps = 44/237 (18%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
            + + L  N +  +        +NL  L L  N ++     +   L+ L  LD+S N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518
            ++    F  L +L                        LQ +G          P      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRC---------------GLQELG----------PGLFRGL 128

Query: 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSS 576
             L YL L ++++   +PD   + L  + +L L  N+I   +P+        L+ L L  
Sbjct: 129 AALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQ 186

Query: 577 NSLSGPLPLIP-------SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
           N ++     +          L TL L +N LS  L       +     LQ L L +N
Sbjct: 187 NRVAH----VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRA---LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 58/307 (18%), Positives = 87/307 (28%), Gaps = 81/307 (26%)

Query: 394 CASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
           C +    +         GL    +G       + L  N IS     S     +L  L + 
Sbjct: 8   CYNEPKVTTSCPQQ---GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 454 TNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQ 513
           +N L   +    F  L  L   D S N+  L+ V P+    F     GL           
Sbjct: 65  SNVL-ARIDAAAFTGLALLEQLDLSDNAQ-LRSVDPAT---FH----GLGR--------- 106

Query: 514 WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLET 571
                  L  L L    +   +   L + L+ + YL L  N +   +PD    D   L  
Sbjct: 107 -------LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTH 157

Query: 572 LDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE 631
           L L  N +S         L                           L  L L  N ++  
Sbjct: 158 LFLHGNRISSVPERAFRGLH-------------------------SLDRLLLHQNRVA-- 190

Query: 632 IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELR 691
                         H+  + F          L  L  L+L  N  S     +L     L+
Sbjct: 191 --------------HVHPHAFRD--------LGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 692 LFDISEN 698
              +++N
Sbjct: 229 YLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 16/172 (9%)

Query: 119 GLKHLIHLDLSYNDFQGIQI----PRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
           GL  L  LDLS N     Q+    P     L  L  L++ R G   + P     L+ LQ+
Sbjct: 78  GLALLEQLDLSDNA----QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL 234
           L L+ N L  L          L  L HL L G  +S   +       LHSL+ L      
Sbjct: 134 LYLQDNALQAL---PDDTFRDLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNR 188

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQ 285
           + H+ P +F +   L+TL +  N    S++  + L  L  L +L L+ N + 
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 54/238 (22%), Positives = 79/238 (33%), Gaps = 43/238 (18%)

Query: 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNS 578
              + L  + IS  +P    ++   +  L L  N +  +I        A LE LDLS N+
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNA 91

Query: 579 LSGPLPLIP-------SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE 631
               L  +          L TL L    L   L   L   +     LQ L L +N L   
Sbjct: 92  Q---LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA---LQYLYLQDNALQ-A 143

Query: 632 IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELR 691
           +PD                 F          L +L  L L GNR S     + +    L 
Sbjct: 144 LPDDT---------------FRD--------LGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 692 LFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
              + +N    ++       L  ++ L L AN         L  L +L+ L L+ N  
Sbjct: 181 RLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 19/203 (9%)

Query: 567 AQLETLDLSSNSLSGPLPLIP-------SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQ 619
           A  + + L  N +S     +P        +LT L L SN L+  +       +     L+
Sbjct: 32  AASQRIFLHGNRISH----VPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL---LE 83

Query: 620 VLNLGNNTLSGEIP-DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG 678
            L+L +N     +    +     L  LHL         P     L++LQ L+L+ N    
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 679 KIPV-SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
            +P  + ++   L    +  N    ++P      L  +  L L  N+     P     L 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 738 SLKILDLSSNNLTGVIPRCINNL 760
            L  L L +NNL+ +    +  L
Sbjct: 202 RLMTLYLFANNLSALPTEALAPL 224

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 51/261 (19%), Positives = 81/261 (31%), Gaps = 43/261 (16%)

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
           T       L      IP++   + L  N +S  +             L +L L +N L+ 
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQRIFLHGNRIS-HVPA---ASFRACRNLTILWLHSNVLAR 70

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLP-TSLGTLSSLQILHLRGNRFSGKIPV-SLQNCT 688
                +   + L  L L +N    ++   +   L  L  LHL       ++     +   
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 689 ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748
            L+   + +N     +P      L  +  L L  N+          GL SL  L L  N 
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808
           +  V P    +L                                   L  L L AN  S 
Sbjct: 189 VAHVHPHAFRDLGR---------------------------------LMTLYLFANNLS- 214

Query: 809 EIPSQV-TNLVGLQTLKLSHN 828
            +P++    L  LQ L+L+ N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 40/238 (16%), Positives = 68/238 (28%), Gaps = 39/238 (16%)

Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
            Q + L  N +S      +     L  L L  N        +   L+ L+ L L  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 678 GKIPVS-LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGL 736
             +  +       L    +        +   +   L+ +  L L+ N            L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 737 ASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYL 796
            +L  L L  N ++ V  R    L                                   L
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHS---------------------------------L 179

Query: 797 KVLDLSANYFSGEIPSQV-TNLVGLQTLKLSHNFFSGRIPVN-MGAMKSVEALDFSSN 852
             L L  N  +  +      +L  L TL L  N  S  +P   +  +++++ L  + N
Sbjct: 180 DRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 42/233 (18%), Positives = 70/233 (30%), Gaps = 40/233 (17%)

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
           + L  N  +     S     +L IL L  N  +     +      L   D+S+N  + ++
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 705 PTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA 764
                  L  +  L L         P    GLA+L+ L L  N L  +      +L    
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-- 154

Query: 765 KEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLVGLQTL 823
                                          L  L L  N  S  +P +    L  L  L
Sbjct: 155 -------------------------------LTHLFLHGNRIS-SVPERAFRGLHSLDRL 182

Query: 824 KLSHNFFSGRIPVNM-GAMKSVEALDFSSNRL---QGEIPKNMVNLEFLEIFN 872
            L  N  +  +  +    +  +  L   +N L     E    +  L++L + +
Sbjct: 183 LLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
           +   L +L HL L  N    +   R    L +L  L + +     + PH   +L  L  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
            L  N L  L  E     + L  L++L L+ 
Sbjct: 207 YLFANNLSALPTEAL---APLRALQYLRLND 234

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  116 bits (294), Expect = 7e-28
 Identities = 95/478 (19%), Positives = 158/478 (33%), Gaps = 85/478 (17%)

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH--HISPLSFA--NFSSLVTLDI 254
           ++ LD+   +LS      L+   L   + +R   C L       +S A     +L  L++
Sbjct: 5   IQSLDIQCEELSDARWAELL-PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 255 SDNQFADS--SIVNQVLGLVN--LVFLDLSTNNFQ----GAVPDAIQNSTSLQHLDLSRN 306
             N+  D     V Q L   +  +  L L          G +   ++   +LQ L LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 307 HFS-SSVPDWFNKFID----LEYLSLSYNELQ----GSIPGSLGNLTSIKSLDLSFNRLE 357
               + +       +D    LE L L Y  L       +   L      K L +S N + 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 358 SK----IPRAFKRLR-HLRSVNLSGNKLSQEISQVLDMFSACASN-VLESLDLSNNTLFG 411
                 + +  K     L ++ L    ++ +  + L      AS   L  L L +N L  
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL--CGIVASKASLRELALGSNKLGD 241

Query: 412 -----LLTNQIGNFKNLDSLDLSFNNIS----GHIPLSLGQLSSLRYLDVSTNNLNGTLS 462
                L    +     L +L +    I+    G +   L    SL+ L ++ N L     
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG---- 297

Query: 463 ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL---LSQN 519
                        D     L   ++ P       L+++ + SC             L+QN
Sbjct: 298 -------------DEGARLLCETLLEPGCQ----LESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 520 -HLIYLDLSNSSISDT----IPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDL 574
             L+ L +SN+ + D     +   L +  S +  L L+   +       + +       L
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV------SDSSCSSLAATL 394

Query: 575 SSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNE-MNNSMRLQVLNLGNNTLSGE 631
            +N           SL  LDLS+N L       L          L+ L L +   S E
Sbjct: 395 LANH----------SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  108 bits (271), Expect = 6e-25
 Identities = 94/548 (17%), Positives = 160/548 (29%), Gaps = 135/548 (24%)

Query: 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPN 180
             +  LD+                        +S A +  ++P     L   Q + L   
Sbjct: 3   LDIQSLDIQCE--------------------ELSDARWAELLPL----LQQCQVVRLDDC 38

Query: 181 YLGGLYVEDFGWV-SHLSLLKHLDLSGVDLSKTSDGPLITNSLHS----LETLRFSGCLL 235
            L     +D          L  L+L   +L        +   L +    ++ L    C L
Sbjct: 39  GLTEARCKDISSALRVNPALAELNLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

Query: 236 -----HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPD 290
                  +S        +L  L +SDN   D+ +  Q+L    L                
Sbjct: 98  TGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGL--QLLCEGLL---------------- 138

Query: 291 AIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLD 350
                  L+ L L     S+            E L+             L      K L 
Sbjct: 139 --DPQCRLEKLQLEYCSLSA---------ASCEPLAS-----------VLRAKPDFKELT 176

Query: 351 LSFNRLESK----IPRAFKRLR-HLRSVNLSGNKLSQEISQVLDMFSACASN-VLESLDL 404
           +S N +       + +  K     L ++ L    ++ +  + L      AS   L  L L
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL--CGIVASKASLRELAL 234

Query: 405 SNNTLFG-----LLTNQIGNFKNLDSLDLSFNNIS----GHIPLSLGQLSSLRYLDVSTN 455
            +N L       L    +     L +L +    I+    G +   L    SL+ L ++ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
            L                  D     L   ++ P       L+++ + SC          
Sbjct: 295 ELG-----------------DEGARLLCETLLEPGCQ----LESLWVKSCSFTAACCSHF 333

Query: 516 ---LSQN-HLIYLDLSNSSISDT----IPDRLVKSLSQINYLNLSYNQIFGQ-IPDLNDA 566
              L+QN  L+ L +SN+ + D     +   L +  S +  L L+   +       L   
Sbjct: 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393

Query: 567 ----AQLETLDLSSNS--------LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNN 614
                 L  LDLS+N         L   +      L  L L   + S  +   L     +
Sbjct: 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 453

Query: 615 SMRLQVLN 622
              L+V++
Sbjct: 454 KPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  104 bits (262), Expect = 8e-24
 Identities = 74/429 (17%), Positives = 135/429 (31%), Gaps = 66/429 (15%)

Query: 247 SSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ----GAVPDAIQNSTSLQHLD 302
             + +LDI   + +D+     +  L     + L            +  A++ + +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK--- 359
           L  N               +  +      LQ            I+ L L    L      
Sbjct: 63  LRSNELGDV---------GVHCVL---QGLQT-------PSCKIQKLSLQNCCLTGAGCG 103

Query: 360 -IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL----FGLLT 414
            +    + L  L+ ++LS N L     Q+L          LE L L   +L       L 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 415 NQIGNFKNLDSLDLSFNNISG----HIPLSLGQ-LSSLRYLDVSTNNLN----GTLSENH 465
           + +    +   L +S N+I+      +   L      L  L + +  +       L    
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-I 222

Query: 466 FANLTKLVGFDASGNSL----VLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL---LSQ 518
            A+   L       N L    + ++      P  +L+ + +  C I  +    L   L  
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 519 N-HLIYLDLSNSSISDT----IPDRLVKSLSQINYLNLSYNQIFGQ-IPDLNDAAQ---- 568
              L  L L+ + + D     + + L++   Q+  L +             +        
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 569 LETLDLSSNS--------LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQV 620
           L  L +S+N         L   L    S L  L L+   +S +    L   +  +  L+ 
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 621 LNLGNNTLS 629
           L+L NN L 
Sbjct: 403 LDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  104 bits (261), Expect = 1e-23
 Identities = 84/505 (16%), Positives = 154/505 (30%), Gaps = 115/505 (22%)

Query: 295 STSLQHLDLSRNHFS-SSVPDWFNKFIDLEYLSLSYNELQ----GSIPGSLGNLTSIKSL 349
           S  +Q LD+     S +   +        + + L    L       I  +L    ++  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 350 DLSFNRLESK----IPRAFKRL-RHLRSVNLSGNKLSQEISQVL-DMFSACASNVLESLD 403
           +L  N L       + +  +     ++ ++L    L+     VL        +  L+ L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT--LQELH 119

Query: 404 LSNNTL-----FGLLTNQIGNFKNLDSLDLSFNNIS----GHIPLSLGQLSSLRYLDVST 454
           LS+N L       L    +     L+ L L + ++S      +   L      + L VS 
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 455 NNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW 514
           N++N                 +A    L   +          L+A+ L SC +     + 
Sbjct: 180 NDIN-----------------EAGVRVLCQGLKDSPCQ----LEALKLESCGVTSDNCRD 218

Query: 515 L---LSQN-HLIYLDLSNSSISDT----IPDRLVKSLSQINYLNLSYNQI-------FGQ 559
           L   ++    L  L L ++ + D     +   L+   S++  L +    I         +
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 560 IPDLNDAAQLETLDLSSNSLSGP--------LPLIPSSLTTLDLSSNFLSGTLSRFLCNE 611
           +        L+ L L+ N L           L      L +L + S   +        + 
Sbjct: 279 VLRAK--ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 612 MNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHL 671
           +  +  L  L + NN L                  L +              S L++L L
Sbjct: 337 LAQNRFLLELQISNNRLEDAG-----------VRELCQGLGQPG--------SVLRVLWL 377

Query: 672 RGNRFSGK----IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLS--LRANQF 725
                S      +  +L     LR  D+S N         +G+  +GI+ L   +R    
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNC--------LGD--AGILQLVESVRQPGC 427

Query: 726 HGFFPPELCGLASLKILDLSSNNLT 750
                        L+ L L     +
Sbjct: 428 L------------LEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 98.5 bits (246), Expect = 1e-21
 Identities = 79/391 (20%), Positives = 116/391 (29%), Gaps = 58/391 (14%)

Query: 119 GLKHLIHLDLSYNDF--QGIQ-IPRFLGSLENLMYLNISR-----AGFVGIIPHQIGNLS 170
            L+    + L          + I   L     L  LN+        G   ++        
Sbjct: 26  LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85

Query: 171 NLQFLDLRPNYLGGLYVEDFGWV-SHLSLLKHLDLSGVDLSKTSDGPLITNSLH---SLE 226
            +Q L L+   L G            L  L+ L LS   L       L    L     LE
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 227 TLRFSGCLLHHISPLSFA----NFSSLVTLDISDNQFADSSIVNQVLGL----VNLVFLD 278
            L+   C L   S    A           L +S+N   ++ +     GL      L  L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 279 LSTNNF--QGAVP--DAIQNSTSLQHLDLSRNHFSSS-----VPDWFNKFIDLEYLSLSY 329
           L +              + +  SL+ L L  N           P   +    L  L +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 330 NELQ----GSIPGSLGNLTSIKSLDLSFNRLESKIPRAF-----KRLRHLRSVNLSGNKL 380
             +     G +   L    S+K L L+ N L  +  R       +    L S+ +     
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 381 SQEISQVLDMFSACASN-VLESLDLSNNTL---------FGLLTNQIGNFKNLDSLDLSF 430
           +          S  A N  L  L +SNN L          GL          L  L L+ 
Sbjct: 326 TAACCSHF--SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG----SVLRVLWLAD 379

Query: 431 NNIS----GHIPLSLGQLSSLRYLDVSTNNL 457
            ++S      +  +L    SLR LD+S N L
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.0 bits (224), Expect = 5e-19
 Identities = 69/358 (19%), Positives = 111/358 (31%), Gaps = 66/358 (18%)

Query: 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLD 176
           L  L  L  L LS N                     +  AG   +    +     L+ L 
Sbjct: 109 LRTLPTLQELHLSDN--------------------LLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 177 LRPNYLGGLYVEDFGWV-SHLSLLKHLDLSGVDLSKTSDGPLITNSLH----SLETLRFS 231
           L    L     E    V       K L +S  D+++ +   ++   L      LE L+  
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE-AGVRVLCQGLKDSPCQLEALKLE 207

Query: 232 GCLLHHISPLSFANF----SSLVTLDISDNQFADSSIVNQVLGLVN----LVFLDLSTNN 283
            C +   +           +SL  L +  N+  D  +     GL++    L  L +    
Sbjct: 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267

Query: 284 FQ----GAVPDAIQNSTSLQHLDLSRNHFSSS-VPDWFNKFID----LEYLSLSYNELQG 334
                 G +   ++   SL+ L L+ N              ++    LE L +       
Sbjct: 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

Query: 335 ----SIPGSLGNLTSIKSLDLSFNRLESKIPRAF-----KRLRHLRSVNLSGNKLS---- 381
                    L     +  L +S NRLE    R       +    LR + L+   +S    
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 387

Query: 382 QEISQVLDMFSACASNVLESLDLSNNTL-----FGLLTNQIGNFKNLDSLDLSFNNIS 434
             ++  L      A++ L  LDLSNN L       L+ +       L+ L L     S
Sbjct: 388 SSLAATL-----LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 63/388 (16%), Positives = 117/388 (30%), Gaps = 78/388 (20%)

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI-------FGQIPDLNDAAQ 568
           +S + +  LD+    +SD     L+  L Q   + L    +             L     
Sbjct: 1   MSLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA--LRVNPA 57

Query: 569 LETLDLSSNSLSGP--------LPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQV 620
           L  L+L SN L           L      +  L L +  L+G     L + +     LQ 
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 621 LNLGNNTLSGE-----IPDCWMNWSFLFFLHLGENDFT----GNLPTSLGTLSSLQILHL 671
           L+L +N L                  L  L L     +      L + L      + L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 672 RGNRFSGK----IPVSLQNCTE-LRLFDISENEFVGNIPTWIGERLSG---IILLSLRAN 723
             N  +      +   L++    L    +       +    +   ++    +  L+L +N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 724 QFHGFFPPELC-----GLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDAL 778
           +       ELC       + L+ L +    +T    +   +L      VL   +      
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGIT---AKGCGDLC----RVLRAKES----- 285

Query: 779 IVYKKKVVKYPIGYPYYLKVLDLSANYFSGE-----IPSQVTNLVGLQTLKLSHNFFSGR 833
                            LK L L+ N    E       + +     L++L +    F+  
Sbjct: 286 -----------------LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328

Query: 834 IPVNMGAM----KSVEALDFSSNRLQGE 857
              +  ++    + +  L  S+NRL+  
Sbjct: 329 CCSHFSSVLAQNRFLLELQISNNRLEDA 356

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (266), Expect = 5e-24
 Identities = 61/288 (21%), Positives = 112/288 (38%), Gaps = 30/288 (10%)

Query: 416 QIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGF 475
            I N  +L S +  +N ISG                +   N N  +S      + +    
Sbjct: 6   PINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 476 DASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTI 535
             +  +L      P   PP Q+  + ++   +    P+       L YLD  ++ +S T+
Sbjct: 65  QLNRLNLS---SLPDNLPP-QITVLEITQNALI-SLPELP---ASLEYLDACDNRLS-TL 115

Query: 536 PDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDL 595
           P+      + + +L++  NQ+   +P+L   A LE ++  +N L+  LP +P+SL  L +
Sbjct: 116 PE----LPASLKHLDVDNNQL-TMLPELP--ALLEYINADNNQLTM-LPELPTSLEVLSV 167

Query: 596 SSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN---TLSGEIPDCWMNWSFLFFLHLGENDF 652
            +N L+  L     +       L+ L++  N   +L         +     F    EN  
Sbjct: 168 RNNQLT-FLPELPES-------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 653 TGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEF 700
           T ++P ++ +L     + L  N  S +I  SL   T    +      F
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (262), Expect = 1e-23
 Identities = 58/333 (17%), Positives = 112/333 (33%), Gaps = 38/333 (11%)

Query: 162 IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS 221
           I   I N  +L   +   N + G Y + F   S     +   L G + ++          
Sbjct: 3   IMLPINNNFSLS-QNSFYNTISGTYADYF---SAWDKWEKQALPGENRNEAVSLLKECL- 57

Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
           ++    L+ +   L  + P +      +  L+I+ N     S+        +L +LD   
Sbjct: 58  INQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNAL--ISLPEL---PASLEYLDACD 109

Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N     +P+   +   L+HLD+  N  +  +P+       LEY++   N+L   +P    
Sbjct: 110 NRLS-TLPELPAS---LKHLDVDNNQLTM-LPELPAL---LEYINADNNQLT-MLPELPT 160

Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ---EISQVLDMFSACASNV 398
           +L   + L +  N+L   +P   + L  L   ++S N L        +            
Sbjct: 161 SL---EVLSVRNNQLTF-LPELPESLEAL---DVSTNLLESLPAVPVRNHHS-----EET 208

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
                   N +   +   I +     ++ L  N +S  I  SL Q ++           +
Sbjct: 209 EIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSW 491
            +  + +  +        A         VS  W
Sbjct: 268 MSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  102 bits (256), Expect = 8e-23
 Identities = 74/394 (18%), Positives = 134/394 (34%), Gaps = 54/394 (13%)

Query: 367 LRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN-QIGNFKNLDS 425
           L    + +LS N     IS     + +      E   L        ++  +         
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDK-WEKQALPGENRNEAVSLLKECLINQFSE 63

Query: 426 LDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLK 485
           L L+  N+S  +P +L     +  L+++ N L  +L E   A+L  L   DA  N L   
Sbjct: 64  LQLNRLNLS-SLPDNLPP--QITVLEITQNAL-ISLPEL-PASLEYL---DACDNRLS-- 113

Query: 486 VVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQ 545
                                     P+   S   L +LD+ N+ ++  +P+      + 
Sbjct: 114 ------------------------TLPELPAS---LKHLDVDNNQLT-MLPE----LPAL 141

Query: 546 INYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLS 605
           + Y+N   NQ+   +P+L     LE L + +N L+  LP +P SL  LD+S+N L  +L 
Sbjct: 142 LEYINADNNQL-TMLPEL--PTSLEVLSVRNNQLTF-LPELPESLEALDVSTNLLE-SLP 196

Query: 606 RFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSS 665
                  ++           N ++  IP+  ++      + L +N  +  +  SL   ++
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 666 LQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF 725
               H     FS  +    QN     L D     F  N  + + +               
Sbjct: 256 QPDYHGPRIYFS--MSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA--FEHEEHANT 311

Query: 726 HGFFPPELCGLASLKILDLSSNNLTGVIPRCINN 759
              F   L    S +        +   + +   +
Sbjct: 312 FSAFLDRLSDTVSARNTSGFREQVAAWLEKLSAS 345

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (251), Expect = 3e-22
 Identities = 56/350 (16%), Positives = 108/350 (30%), Gaps = 39/350 (11%)

Query: 126 LDLSYNDFQGI--QIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLG 183
            +  YN   G            E       +R   V ++      ++    L L    L 
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS 72

Query: 184 GLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSF 243
            L             +  L+++   L        +     SLE L      L  +  L  
Sbjct: 73  SLPDNLP------PQITVLEITQNALIS------LPELPASLEYLDACDNRLSTLPEL-- 118

Query: 244 ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL 303
              +SL  LD+ +NQ    +++ ++     L +++   N     +P+   +   L+ L +
Sbjct: 119 --PASLKHLDVDNNQL---TMLPELPA--LLEYINADNNQLT-MLPELPTS---LEVLSV 167

Query: 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKS----LDLSFNRLESK 359
             N  +  +P+       LE L +S N L+ S+P         +          NR+   
Sbjct: 168 RNNQLTF-LPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH- 221

Query: 360 IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGN 419
           IP     L    ++ L  N LS  I + L   +A        +  S +       ++   
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

Query: 420 FKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANL 469
                    +  +    I  +              + L+ T+S  + +  
Sbjct: 282 DAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGF 331

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.9 bits (246), Expect = 1e-21
 Identities = 54/257 (21%), Positives = 99/257 (38%), Gaps = 31/257 (12%)

Query: 507 IGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDA 566
               +               + +     + + L   ++Q + L L+   +   +PD N  
Sbjct: 25  TYADYFSAWDKWEKQALPGENRNEAVSLLKECL---INQFSELQLNRLNL-SSLPD-NLP 79

Query: 567 AQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
            Q+  L+++ N+L   LP +P+SL  LD   N LS TL     +       L+ L++ NN
Sbjct: 80  PQITVLEITQNALI-SLPELPASLEYLDACDNRLS-TLPELPAS-------LKHLDVDNN 130

Query: 627 TLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQN 686
            L+  +P+       L +++   N  T  LP       SL++L +R N+ +  +P   ++
Sbjct: 131 QLT-MLPELPAL---LEYINADNNQLT-MLPELPT---SLEVLSVRNNQLT-FLPELPES 181

Query: 687 CTELRLFDISENEFVGNIPTWIGERLS---GIILLSLRANQFHGFFPPELCGLASLKILD 743
              L   D+S N    ++P             I    R N+     P  +  L     + 
Sbjct: 182 LEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 744 LSSNNLTGVIPRCINNL 760
           L  N L+  I   ++  
Sbjct: 237 LEDNPLSSRIRESLSQQ 253

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 2e-17
 Identities = 56/340 (16%), Positives = 103/340 (30%), Gaps = 83/340 (24%)

Query: 517 SQNHLIYLDLSNSSISDTIPD--RLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDL 574
           + N  +  +   ++IS T  D         +      + N+    + +     Q   L L
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN-QFSELQL 66

Query: 575 SSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPD 634
           +  +LS     +P  +T L+++ N L  +L     +       L+ L+  +N LS  +P+
Sbjct: 67  NRLNLSSLPDNLPPQITVLEITQNALI-SLPELPAS-------LEYLDACDNRLS-TLPE 117

Query: 635 CWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD 694
              +   L  L +  N  T  LP        L+ ++   N+ +  +P    +   L + +
Sbjct: 118 LPAS---LKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLSVRN 169

Query: 695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754
                                       NQ      PEL    SL+ LD+S+N L   +P
Sbjct: 170 ----------------------------NQLTFL--PEL--PESLEALDVSTNLLES-LP 196

Query: 755 RCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV 814
                     +                                      N  +  IP  +
Sbjct: 197 AVPVRNHHSEET-----------------------------EIFFRCRENRIT-HIPENI 226

Query: 815 TNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854
            +L    T+ L  N  S RI  ++    +           
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 25/145 (17%)

Query: 729 FPPELCGLASLKILDLSSNNLTGVIPRCI-NNLAGMAKEVLEVDKFFEDALIVYKKKVVK 787
           +           +   + N    ++  C+ N                   L + +  +  
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLINQF---------------SELQLNRLNLSS 73

Query: 788 YPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEAL 847
            P   P  + VL+++ N     +P    +L   + L    N  S  +P    ++K    L
Sbjct: 74  LPDNLPPQITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TLPELPASLKH---L 125

Query: 848 DFSSNRLQGEIPKNMVNLEFLEIFN 872
           D  +N+L   +P+    LE++   N
Sbjct: 126 DVDNNQLT-MLPELPALLEYINADN 149

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 52/193 (26%)

Query: 680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL 739
              +     +  L   + NE V  +   +   ++    L L         P  L     +
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL---INQFSELQLNRLNLS-SLPDNLP--PQI 82

Query: 740 KILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVL 799
            +L+++ N L   +P    +L                                    + L
Sbjct: 83  TVLEITQNALI-SLPELPASL------------------------------------EYL 105

Query: 800 DLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP 859
           D   N  S  +P    +L   + L + +N  +  +P        +E ++  +N+L   +P
Sbjct: 106 DACDNRLS-TLPELPASL---KHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLP 156

Query: 860 KNMVNLEFLEIFN 872
           +   +LE L + N
Sbjct: 157 ELPTSLEVLSVRN 169

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 97.3 bits (243), Expect = 2e-22
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 12/215 (5%)

Query: 246 FSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS 304
             S   LD+S N      + +        L  LDLS    Q     A Q+ + L  L L+
Sbjct: 27  PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFNRLES-KIPR 362
            N   S     F+    L+ L      L  S+    +G+L ++K L+++ N ++S K+P 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 363 AFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK- 421
            F  L +L  ++LS NK+       L +        L  LDLS N +  +   Q G FK 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMNFI---QPGAFKE 199

Query: 422 -NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
             L  L L  N +         +L+SL+ + + TN
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 10/213 (4%)

Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
            +   LDLS N  +     +  +   LQ LDLSR    +     +     L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
           +Q    G+   L+S++ L      L S        L+ L+ +N++ N + Q   ++ + F
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSF-KLPEYF 145

Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLD----SLDLSFNNISGHIPLSLGQLSSL 447
           S   +  LE LDLS+N +  +    +     +     SLDLS N ++  I     +   L
Sbjct: 146 SNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202

Query: 448 RYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
           + L + TN L  ++ +  F  LT L       N
Sbjct: 203 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 49/211 (23%), Positives = 76/211 (36%), Gaps = 26/211 (12%)

Query: 168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLET 227
           +   LQ LDL    +  +    +     LS L  L L+G  +   + G    + L SL+ 
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQSLALG--AFSGLSSLQK 104

Query: 228 LRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGA 287
           L      L  +      +  +L  L+++ N      +      L NL  LDLS+N  Q  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 288 VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
               ++    +  L+LS                    L LS N +   I         +K
Sbjct: 165 YCTDLRVLHQMPLLNLS--------------------LDLSLNPMN-FIQPGAFKEIRLK 203

Query: 348 SLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
            L L  N+L+S     F RL  L+ + L  N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 56/263 (21%), Positives = 89/263 (33%), Gaps = 64/263 (24%)

Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
            S K+LDLSFN L      +F     L+ ++LS  ++           S      L +L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-----LSTLI 82

Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSE 463
           L+ N +  L         +L  L     N++      +G L +L+ L+V+ N +      
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 464 NHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL-LSQNHLI 522
            +F+NLT L                                        + L LS N + 
Sbjct: 143 EYFSNLTNL----------------------------------------EHLDLSSNKI- 161

Query: 523 YLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGP 582
                  SI  T    L +       L+LS N +    P      +L+ L L +N L   
Sbjct: 162 ------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS- 214

Query: 583 LPLIP-------SSLTTLDLSSN 598
              +P       +SL  + L +N
Sbjct: 215 ---VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 41/240 (17%)

Query: 422 NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNS 481
           +  +LDLSFN +      S      L+ LD+S   +  T+ +  + +L+ L     +GN 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN- 86

Query: 482 LVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVK 541
                          +Q++     F G            L  L    ++++ ++ +  + 
Sbjct: 87  --------------PIQSLA-LGAFSGLS---------SLQKLVAVETNLA-SLENFPIG 121

Query: 542 SLSQINYLNLSYNQI-FGQIPDL-NDAAQLETLDLSSNSLS-------GPLPLIPSSLTT 592
            L  +  LN+++N I   ++P+  ++   LE LDLSSN +          L  +P    +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 593 LDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDF 652
           LDLS N +      F+       +RL+ L L  N L       +   + L  + L  N +
Sbjct: 182 LDLSLNPM-----NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 45/193 (23%), Positives = 69/193 (35%), Gaps = 13/193 (6%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
               L  LDLS  + Q I+   +   L +L  L ++      +       LS+LQ L   
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSK-TSDGPLITNSLHSLETLRFSGCLLHH 237
              L  L     G   HL  LK L+++   +           ++L +LE L  S   +  
Sbjct: 109 ETNLASLENFPIG---HLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQS 163

Query: 238 ISPLSFANFSSL----VTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ 293
           I          +    ++LD+S N    + I       + L  L L TN  +        
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 294 NSTSLQHLDLSRN 306
             TSLQ + L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 52/244 (21%), Positives = 82/244 (33%), Gaps = 58/244 (23%)

Query: 523 YLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSN--- 577
            LDLS + +   +      S  ++  L+LS  +I   I D      + L TL L+ N   
Sbjct: 32  NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM 637
           SL+       SSL  L      L+ +L  F    +     L+ LN+ +N +         
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKT---LKELNVAHNLIQ-SFK---- 140

Query: 638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPV-SLQNCTELRLFDIS 696
                         F+         L++L+ L L  N+    I    L+   ++ L ++S
Sbjct: 141 ----------LPEYFSN--------LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181

Query: 697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC 756
                                L L  N  + F  P       LK L L +N L  V    
Sbjct: 182 ---------------------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 757 INNL 760
            + L
Sbjct: 220 FDRL 223

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 13/172 (7%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
            L HL  L L+ N  Q +        L +L  L         +    IG+L  L+ L++ 
Sbjct: 74  SLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL---- 234
            N +     +   + S+L+ L+HLDLS   +       L    LH +  L  S  L    
Sbjct: 133 HNLI--QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL--RVLHQMPLLNLSLDLSLNP 188

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQ 285
           ++ I P +F     L  L +  NQ    S+ + +   L +L  + L TN + 
Sbjct: 189 MNFIQPGAFKEIR-LKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 17/189 (8%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSN 577
            L  LDLS   I  TI D   +SLS ++ L L+ N I   +     +  + L+ L     
Sbjct: 53  ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVET 110

Query: 578 SLSGPLPL----IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN---TLSG 630
           +L+  L         +L  L+++ N +         + + N   L+ L+L +N   ++  
Sbjct: 111 NLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN---LEHLDLSSNKIQSIYC 166

Query: 631 EIPDCWMNWSFLFF-LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTE 689
                      L   L L  N     +         L+ L L  N+            T 
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225

Query: 690 LRLFDISEN 698
           L+   +  N
Sbjct: 226 LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 53/250 (21%), Positives = 82/250 (32%), Gaps = 48/250 (19%)

Query: 586 IPSSLTTLDLSSNFL----SGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSF 641
           +P S   LDLS N L    S +   F          LQVL+L    +       + + S 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSF--------PELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 642 LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFV 701
           L  L L  N        +   LSSLQ L       +      + +   L+  +++ N   
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN--- 134

Query: 702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLA 761
                             +++ +   +F      L +L+ LDLSSN +  +    +  L 
Sbjct: 135 -----------------LIQSFKLPEYFS----NLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 762 GMAKEVLEVDKFFEDALIVYKKKVVKYPIG--YPYYLKVLDLSANYFSGEIPSQV-TNLV 818
            M    L         L +    +     G      LK L L  N     +P  +   L 
Sbjct: 174 QMPLLNLS--------LDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLT 224

Query: 819 GLQTLKLSHN 828
            LQ + L  N
Sbjct: 225 SLQKIWLHTN 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  101 bits (252), Expect = 3e-22
 Identities = 47/252 (18%), Positives = 87/252 (34%), Gaps = 22/252 (8%)

Query: 221 SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS 280
           +             +      +    +S+  +  +++       +     L N+  L L+
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQY---LPNVTKLFLN 73

Query: 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSL 340
            N      P  + N  +L  L L  N               L+ LSL +N +   I G L
Sbjct: 74  GNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DING-L 127

Query: 341 GNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLE 400
            +L  ++SL L  N++         RL  L +++L  N++S +I  +  +        L+
Sbjct: 128 VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTK------LQ 178

Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
           +L LS N +  L    +   KNLD L+L               L     +  +  +L   
Sbjct: 179 NLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

Query: 461 LSENHFANLTKL 472
              +   +  K 
Sbjct: 237 EIISDDGDYEKP 248

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  100 bits (249), Expect = 6e-22
 Identities = 46/277 (16%), Positives = 100/277 (36%), Gaps = 24/277 (8%)

Query: 194 SHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLD 253
              +     +L    ++         N L+S++ +  +   +  +  +      ++  L 
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLF 71

Query: 254 ISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP 313
           ++ N+  D   +  +  L NL +L L  N  +      +++   L+ L L  N  S    
Sbjct: 72  LNGNKLTD---IKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING 126

Query: 314 DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSV 373
                   LE L L  N++   I   L  LT + +L L  N++ S I      L  L+++
Sbjct: 127 --LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI-SDIV-PLAGLTKLQNL 180

Query: 374 NLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNI 433
            LS N +S ++  +  + +      L+ L+L +        N   N    +++  +  ++
Sbjct: 181 YLSKNHIS-DLRALAGLKN------LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 434 SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLT 470
                +S         +          +S   +  +T
Sbjct: 234 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.9 bits (230), Expect = 1e-19
 Identities = 51/254 (20%), Positives = 95/254 (37%), Gaps = 49/254 (19%)

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
           +  I P     F+  +  ++      D+   N+   L ++  +  + ++ +      IQ 
Sbjct: 11  IKQIFPDD--AFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSV--QGIQY 63

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
             ++  L L+ N  +   P       +L +L L  N+++  +   L +L  +KSL L  N
Sbjct: 64  LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHN 119

Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT 414
            + S I      L  L S+ L  NK++                     D++         
Sbjct: 120 GI-SDIN-GLVHLPQLESLYLGNNKIT---------------------DITV-------- 148

Query: 415 NQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVG 474
             +     LD+L L  N IS  I   L  L+ L+ L +S N+++  L     A L  L  
Sbjct: 149 --LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDV 201

Query: 475 FDASGNSLVLKVVS 488
            +      + K ++
Sbjct: 202 LELFSQECLNKPIN 215

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.5 bits (229), Expect = 2e-19
 Identities = 49/242 (20%), Positives = 83/242 (34%), Gaps = 23/242 (9%)

Query: 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLD 176
                  I  +L                L ++  +  + +    +    I  L N+  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 71

Query: 177 LRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH 236
           L  N L      D   +++L  L  L L    +   S   L    L  L++L      + 
Sbjct: 72  LNGNKL-----TDIKPLTNLKNLGWLFLDENKIKDLS--SL--KDLKKLKSLSLEHNGIS 122

Query: 237 HISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNST 296
            I+ L   +   L +L + +N+  D ++++    L  L  L L  N     VP  +   T
Sbjct: 123 DINGLV--HLPQLESLYLGNNKITDITVLS---RLTKLDTLSLEDNQISDIVP--LAGLT 175

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
            LQ+L LS+NH S           +L+ L L   E          NL    ++  +   L
Sbjct: 176 KLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 357 ES 358
            +
Sbjct: 234 VT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 3e-15
 Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 22/232 (9%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSL 579
             I  +L   S++D +       L+ I+ +  + + I   +  +     +  L L+ N L
Sbjct: 22  ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKL 77

Query: 580 SGPLPLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN 638
           +   PL    +L  L L  N +   LS     ++     L+ L+L +N +S +I     +
Sbjct: 78  TDIKPLTNLKNLGWLFLDENKIK-DLSSL--KDLKK---LKSLSLEHNGIS-DINGLV-H 129

Query: 639 WSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698
              L  L+LG N  T    T L  L+ L  L L  N+ S  I   L   T+L+   +S+N
Sbjct: 130 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKN 185

Query: 699 EFVGNIPTWIG-ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
               +I        L  + +L L + +           L     +  +  +L
Sbjct: 186 ----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 6e-13
 Identities = 56/307 (18%), Positives = 98/307 (31%), Gaps = 81/307 (26%)

Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPL 583
               ++ I    PD    + ++    NL    +       N+   ++ +  +++ +    
Sbjct: 4   TITVSTPIKQIFPD---DAFAETIKDNLKKKSV-TDAVTQNELNSIDQIIANNSDIKSVQ 59

Query: 584 PLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFL 642
            +    ++T L L+ N L+  +       + N   L  L L  N +              
Sbjct: 60  GIQYLPNVTKLFLNGNKLT-DIKPL--TNLKN---LGWLFLDENKIK------------- 100

Query: 643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG 702
                   D +      L  L  L+ L L  N  S  I   L +  +L    +  N    
Sbjct: 101 --------DLSS-----LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNN---- 141

Query: 703 NIPTWIG-ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLA 761
            I       RL+ +  LSL  NQ        L GL  L+ L LS N+++      +  LA
Sbjct: 142 KITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS-----DLRALA 194

Query: 762 GMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQ 821
           G+                                L VL+L +     +  +  +NLV   
Sbjct: 195 GLKN------------------------------LDVLELFSQECLNKPINHQSNLVVPN 224

Query: 822 TLKLSHN 828
           T+K +  
Sbjct: 225 TVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 53/322 (16%), Positives = 96/322 (29%), Gaps = 102/322 (31%)

Query: 549 LNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLDLSSNFLSGTLSRF 607
                  I  QI   +  A+    +L   S++  +     +S+  +  +++ +  ++   
Sbjct: 4   TITVSTPI-KQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQ-- 59

Query: 608 LCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQ 667
               +     +  L L  N L+ +I                           L  L +L 
Sbjct: 60  ---GIQYLPNVTKLFLNGNKLT-DI-------------------------KPLTNLKNLG 90

Query: 668 ILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHG 727
            L L  N+    +  SL++  +L+   +  N             +S I            
Sbjct: 91  WLFLDENKIK-DLS-SLKDLKKLKSLSLEHN------------GISDI------------ 124

Query: 728 FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVK 787
                L  L  L+ L L +N +T      I  L+ + K                      
Sbjct: 125 ---NGLVHLPQLESLYLGNNKIT-----DITVLSRLTK---------------------- 154

Query: 788 YPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEAL 847
                   L  L L  N  S +I   +  L  LQ L LS N  S    +    +K+++ L
Sbjct: 155 --------LDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRALA--GLKNLDVL 202

Query: 848 DFSSNRLQGEIPKNMVNLEFLE 869
           +  S     +   +  NL    
Sbjct: 203 ELFSQECLNKPINHQSNLVVPN 224

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 44/185 (23%), Positives = 68/185 (36%), Gaps = 12/185 (6%)

Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283
               L  S  LL+  S  +   ++ L  L++   +     +      L  L  LDLS N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG---TLPVLGTLDLSHNQ 88

Query: 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGN 342
            Q ++P   Q   +L  LD+S N  +S          +L+ L L  NEL+ ++P G L  
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 343 LTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESL 402
              ++ L L+ N L          L +L ++ L  N L                  L   
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL------LPFA 200

Query: 403 DLSNN 407
            L  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.8 bits (223), Expect = 8e-20
 Identities = 54/216 (25%), Positives = 83/216 (38%), Gaps = 17/216 (7%)

Query: 242 SFANFSSLVTLDISDNQFAD--SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299
             +  +S + ++            +        +   L LS N         +   T L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL------PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK 359
            L+L R   +            L  L LS+N+LQ S+P     L ++  LD+SFNRL S 
Sbjct: 59  QLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 360 IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGN 419
              A + L  L+ + L GN+L      +L          LE L L+NN L  L    +  
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-----LEKLSLANNNLTELPAGLLNG 170

Query: 420 FKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
            +NLD+L L  N++   IP        L +  +  N
Sbjct: 171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.5 bits (186), Expect = 6e-15
 Identities = 48/209 (22%), Positives = 72/209 (34%), Gaps = 36/209 (17%)

Query: 147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           +   L++S           +   + L  L+L    L  L V+       L +L  LDLS 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLGTLDLSH 86

Query: 207 VDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN 266
                        N L SL              PL      +L  LD+S N+   +S+  
Sbjct: 87  -------------NQLQSL--------------PLLGQTLPALTVLDVSFNRL--TSLPL 117

Query: 267 QVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYL 325
             L GL  L  L L  N  +   P  +  +  L+ L L+ N+ +       N   +L+ L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 326 SLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
            L  N L  +IP        +    L  N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 52/257 (20%), Positives = 82/257 (31%), Gaps = 64/257 (24%)

Query: 322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381
              ++     L  ++P  L        L LS N L +           L  +NL   +L 
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67

Query: 382 QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL 441
                 L +                           G    L +LDLS N +   +PL  
Sbjct: 68  ----TKLQVD--------------------------GTLPVLGTLDLSHNQLQ-SLPLLG 96

Query: 442 GQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIG 501
             L +L  LDVS N L  +L       L +L      GN               +L+ + 
Sbjct: 97  QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN---------------ELKTL- 139

Query: 502 LSSCFIGPQFPQWLLSQ-NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQI 560
                     P  LL+    L  L L+N++++  +P  L+  L  ++ L L  N ++   
Sbjct: 140 ----------PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 561 PDLNDAAQLETLDLSSN 577
                +  L    L  N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 18/194 (9%)

Query: 564 NDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNL 623
           +  A    ++    +L+   P +P   T L LS N L  T S      +    RL  LNL
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY-TFSL---ATLMPYTRLTQLNL 62

Query: 624 GNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS 683
               L+ ++         L  L L  N    +LP    TL +L +L +  NR +  +P+ 
Sbjct: 63  DRAELT-KLQVDG-TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 684 L-QNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF----HGFFPPELCGLAS 738
             +   EL+   +  NE    +P  +      +  LSL  N       G       GL +
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN----GLEN 173

Query: 739 LKILDLSSNNLTGV 752
           L  L L  N+L  +
Sbjct: 174 LDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 37/165 (22%), Positives = 56/165 (33%), Gaps = 13/165 (7%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENL-MYLNISRAGFVGIIPHQIGNLSNLQFLDL 177
               L  L+L   +   +Q+   L  L  L +  N  ++     +P     L  L  LD+
Sbjct: 53  PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDV 107

Query: 178 RPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHH 237
             N L  L +        L  L+ L L G +L     G  +      LE L  +   L  
Sbjct: 108 SFNRLTSLPLGAL---RGLGELQELYLKGNELKTLPPG--LLTPTPKLEKLSLANNNLTE 162

Query: 238 ISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTN 282
           +         +L TL + +N     +I     G   L F  L  N
Sbjct: 163 LPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 47/179 (26%), Positives = 65/179 (36%), Gaps = 35/179 (19%)

Query: 523 YLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGP 582
            L LS + +  T     +   +++  LNL   ++  ++        L TLDLS N L   
Sbjct: 35  ILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQS- 91

Query: 583 LPLIPSS---LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW 639
           LPL+  +   LT LD+S N L+ +L       +     LQ L L  N L    P      
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE---LQELYLKGNELKTLPPGLLTPT 147

Query: 640 SFLFFLHLGENDFTGNLP-------TSLGTL-----------------SSLQILHLRGN 674
             L  L L  N+ T  LP        +L TL                   L    L GN
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 44/209 (21%), Positives = 69/209 (33%), Gaps = 40/209 (19%)

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
           LHL EN        +L   + L  L+L     + K+ V       L   D+S N+   ++
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SL 92

Query: 705 PTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA 764
           P  +G+ L  + +L +  N+        L GL  L+ L L  N L  + P  +       
Sbjct: 93  PL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-- 149

Query: 765 KEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TNLVGLQTL 823
                                          L+ L L+ N  + E+P+ +   L  L TL
Sbjct: 150 -------------------------------LEKLSLANNNLT-ELPAGLLNGLENLDTL 177

Query: 824 KLSHNFFSGRIPVNMGAMKSVEALDFSSN 852
            L  N     IP        +       N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 94.2 bits (234), Expect = 3e-21
 Identities = 67/348 (19%), Positives = 111/348 (31%), Gaps = 62/348 (17%)

Query: 245 NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDA-IQNSTSLQHLDL 303
           NFS       S      ++ V    G  +L +L    +          I  S SL+ L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 304 SRNHFSSSVPDWFNKFID---LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
                 S +     + +    L+ L+L   E+ G+ P  L   T                
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT---------------- 119

Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNF 420
                    L  +NL     +   + + ++        L+ L ++          Q+  F
Sbjct: 120 ------GPDLNILNLRNVSWATRDAWLAELQQWLKPG-LKVLSIAQAHSLNFSCEQVRVF 172

Query: 421 KNLDSLDLSFNNISGHIPLS----LGQLSSLRYLDVSTNNLN--GTLSENHFANLTKLVG 474
             L +LDLS N   G   L       +  +L+ L +    +     +     A   +L G
Sbjct: 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232

Query: 475 FDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDT 534
            D S NSL                         G     W    + L  L+LS + +   
Sbjct: 233 LDLSHNSL---------------------RDAAGAPSCDWP---SQLNSLNLSFTGLK-Q 267

Query: 535 IPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGP 582
           +P  L   LS    L+LSYN++  + P  ++  Q+  L L  N     
Sbjct: 268 VPKGLPAKLS---VLDLSYNRL-DRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.5 bits (227), Expect = 3e-20
 Identities = 54/303 (17%), Positives = 86/303 (28%), Gaps = 39/303 (12%)

Query: 141 FLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK 200
           + G       L              I    +L+ L +R   +    +     V  +S L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFA 260
            L L  ++++ T+  PL+  +   L  L                    L           
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP--------- 149

Query: 261 DSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW----F 316
                        L  L ++  +      + ++   +L  LDLS N              
Sbjct: 150 ------------GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 317 NKFIDLEYLSLSYNELQ---GSIPGSLGNLTSIKSLDLSFNRLESKIPR-AFKRLRHLRS 372
            KF  L+ L+L    ++   G           ++ LDLS N L       +      L S
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 373 VNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNN 432
           +NLS   L Q                L  LDLS N L             + +L L  N 
Sbjct: 258 LNLSFTGLKQ--------VPKGLPAKLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNP 307

Query: 433 ISG 435
              
Sbjct: 308 FLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.6 bits (209), Expect = 8e-18
 Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 19/256 (7%)

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI----FGQIPDLNDAAQ 568
           +       L YL     + +D      +     +  L +   +I          +   + 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 569 LETLDLSSNSLSGPLP-----LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNL 623
           L+ L L +  ++G  P          L  L+L +   +   +     +      L+VL++
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 624 GNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLP----TSLGTLSSLQILHLRGNRF--- 676
                     +    +  L  L L +N   G              +LQ+L LR       
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGL 736
           SG          +L+  D+S N           +  S +  L+L                
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLP 273

Query: 737 ASLKILDLSSNNLTGV 752
           A L +LDLS N L   
Sbjct: 274 AKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.2 bits (208), Expect = 9e-18
 Identities = 59/331 (17%), Positives = 101/331 (30%), Gaps = 45/331 (13%)

Query: 308 FSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRL 367
           FS   PDW + F     L  +  EL G      G  +    L       +        + 
Sbjct: 17  FSDPKPDWSSAF---NCLGAADVELYG------GGRSLEYLLKRVDTEADLGQFTDIIKS 67

Query: 368 RHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLD 427
             L+ + +   ++   I          +   L+ L L N  + G     +      D   
Sbjct: 68  LSLKRLTVRAARIPSRILFGALRVLGISG--LQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 428 LSFNNISGHIP------LSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNS 481
           L+  N+S          L       L+ L ++    +   S         L   D S N 
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-QAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 482 LVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVK 541
            + +    S   P +   +                    L   +    + S      L  
Sbjct: 185 ELGERGLISALCPLKFPTL------------------QVLALRNAGMETPSGVCS-ALAA 225

Query: 542 SLSQINYLNLSYNQIFGQIPDLN--DAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF 599
           +  Q+  L+LS+N +       +    +QL +L+LS   L      +P+ L+ LDLS N 
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNR 285

Query: 600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
           L    S       +   ++  L+L  N    
Sbjct: 286 LDRNPS------PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.3 bits (203), Expect = 4e-17
 Identities = 46/263 (17%), Positives = 78/263 (29%), Gaps = 30/263 (11%)

Query: 509 PQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVK--SLSQINYLNLSYNQIFGQIPD---L 563
                 ++    L  L +  + I   I    ++   +S +  L L   ++ G  P     
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117

Query: 564 NDAAQLETLDLSSNSLSGPLPLIPS-------SLTTLDLSSNFLSGTLSRFLCNEMNNSM 616
                L  L+L + S +     +          L  L ++          F C ++    
Sbjct: 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA----HSLNFSCEQVRVFP 173

Query: 617 RLQVLNLGNNTLSGEIP----DCWMNWSFLFFLHLGENDFT---GNLPTSLGTLSSLQIL 669
            L  L+L +N   GE       C + +  L  L L         G           LQ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 670 HLRGNRFSGKIPVSL-QNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF 728
            L  N              ++L   ++S       +P  +  +LS   +L L  N+    
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLPAKLS---VLDLSYNRLDRN 289

Query: 729 FPPELCGLASLKILDLSSNNLTG 751
             P    L  +  L L  N    
Sbjct: 290 --PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 48/230 (20%), Positives = 69/230 (30%), Gaps = 18/230 (7%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFL-GSLENLMYLNISRAGFVGIIPH----QIGNLS 170
            +LG+  L  L L   +  G   P  L  +  +L  LN+    +          Q     
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 171 NLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGP--LITNSLHSLETL 228
            L+ L +   +      E          L  LDLS             L      +L+ L
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVR---VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 229 RFSGCLLHHIS---PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
                 +   S       A    L  LD+S N   D++          L  L+LS    +
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
             VP  +     L  LDLS N    +          +  LSL  N    S
Sbjct: 267 -QVPKGL--PAKLSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 52/278 (18%), Positives = 87/278 (31%), Gaps = 30/278 (10%)

Query: 569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL 628
           L+ +D  ++       +   SL  L + +  +   +       +  S  LQ L L N  +
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEV 107

Query: 629 SGEIPDCWMNWSFLFFLHL--------GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI 680
           +G  P   +  +      L          + +   L   L     L++L +         
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP--GLKVLSIAQAHSLNFS 165

Query: 681 PVSLQNCTELRLFDISENEFVGNIP---TWIGERLSGIILLSLRANQFH---GFFPPELC 734
              ++    L   D+S+N  +G           +   + +L+LR        G       
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 735 GLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPY 794
               L+ LDLS N+L         +                  L +    + + P G P 
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS-----------LNLSFTGLKQVPKGLPA 274

Query: 795 YLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG 832
            L VLDLS N      PS    L  +  L L  N F  
Sbjct: 275 KLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 56/293 (19%), Positives = 88/293 (30%), Gaps = 36/293 (12%)

Query: 583 LPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDC---WMNW 639
           L     SL  L    +            ++  S+ L+ L +    +   I       +  
Sbjct: 38  LYGGGRSLEYLLKRVDTE---ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 640 SFLFFLHLGENDFTGNLPTSLG--TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE 697
           S L  L L   + TG  P  L   T   L IL+LR   ++                    
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT------------------R 136

Query: 698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCI 757
           + ++  +  W+   L    +LS+       F   ++    +L  LDLS N   G      
Sbjct: 137 DAWLAELQQWLKPGLK---VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 758 NNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV-TN 816
                    +  +     +A +     V          L+ LDLS N       +     
Sbjct: 194 ALCPLKFPTLQVLA--LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 817 LVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG-EIPKNMVNLEFL 868
              L +L LS         V  G    +  LD S NRL     P  +  +  L
Sbjct: 252 PSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNL 301

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 35/154 (22%), Positives = 45/154 (29%), Gaps = 15/154 (9%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQ------IPRFLGSLENLMYLNISRAGFVGIIPHQIGN 168
             +     L  LDLS N   G +       P    +L+ L   N       G+       
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 169 LSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETL 228
              LQ LDL  N L              S L  L+LS   L +     +       L  L
Sbjct: 227 RVQLQGLDLSHNSLRDA--AGAPSCDWPSQLNSLNLSFTGLKQ-----VPKGLPAKLSVL 279

Query: 229 RFSGCLLHHISPLSFANFSSLVTLDISDNQFADS 262
             S   L      S      +  L +  N F DS
Sbjct: 280 DLSYNRLDRNP--SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 107 SKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQI 166
               G  +        L  LDLS+N  +             L  LN+S  G   +     
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--- 270

Query: 167 GNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           G  + L  LDL  N L     +       L  + +L L G
Sbjct: 271 GLPAKLSVLDLSYNRL-----DRNPSPDELPQVGNLSLKG 305

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 60/318 (18%), Positives = 111/318 (34%), Gaps = 56/318 (17%)

Query: 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLD 176
              L + I +    ++            L+ +  L+    G   I    +  L+NL  L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69

Query: 177 LRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH 236
           L+ N +           + L+ LK+L                      +  L  SG  L 
Sbjct: 70  LKDNQI-----------TDLAPLKNLT--------------------KITELELSGNPLK 98

Query: 237 HISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNST 296
           ++S ++     S+ TLD++  Q  D   V  + GL NL  L L  N      P  +   T
Sbjct: 99  NVSAIA--GLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNISP--LAGLT 151

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
           +LQ+L +     S   P        L  L    N++   I   L +L ++  + L  N++
Sbjct: 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQI 207

Query: 357 ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQ 416
               P       +L  V L+   ++ +            +N++    +   +   +    
Sbjct: 208 SDVSP--LANTSNLFIVTLTNQTITNQPVFYN-------NNLVVPNVVKGPSGAPIAPAT 258

Query: 417 IGNFKNLDSLDLSFNNIS 434
           I +     S +L++N  S
Sbjct: 259 ISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 53/303 (17%), Positives = 109/303 (35%), Gaps = 73/303 (24%)

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
            +   +   +++ + +V         +  LS     +  +I G +  L ++  L+L  N+
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQ 74

Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           +    P   K L  +  + LSGN L       +   +   S  +++LDL++  +  +   
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLKN-----VSAIAGLQS--IKTLDLTSTQITDV--T 123

Query: 416 QIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGF 475
            +    NL  L L  N I+   PL+   L++L+YL +    ++        ANL+KL   
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVS---DLTPLANLSKL--- 175

Query: 476 DASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTI 535
                                                           L   ++ ISD  
Sbjct: 176 ----------------------------------------------TTLKADDNKISDIS 189

Query: 536 PDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDL 595
           P   + SL  +  ++L  NQI   +  L + + L  + L++ +++       ++L   ++
Sbjct: 190 P---LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 596 SSN 598
              
Sbjct: 246 VKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 44/236 (18%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSL 579
           + I +    S+++DT+       L  I  L+     +   I  +     L  L+L  N +
Sbjct: 20  NAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQI 75

Query: 580 SGPLPLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN 638
           +   PL   + +T L+LS N L   +S            ++ L+L +  ++   P     
Sbjct: 76  TDLAPLKNLTKITELELSGNPLK-NVSAI-----AGLQSIKTLDLTSTQITDVTP----- 124

Query: 639 WSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698
                                L  LS+LQ+L+L  N+ +  I   L   T L+   I   
Sbjct: 125 ---------------------LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNA 161

Query: 699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754
           + V ++       LS +  L    N+        L  L +L  + L +N ++ V P
Sbjct: 162 Q-VSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 45/245 (18%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
             L  L  +  L+LS N  + +     +  L+++  L+++      + P  +  LSNLQ 
Sbjct: 79  APLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL 234
           L L  N +           +++S L  L                     +L+ L      
Sbjct: 134 LYLDLNQI-----------TNISPLAGLT--------------------NLQYLSIGNAQ 162

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
           +  ++PL+  N S L TL   DN+ +D S +     L NL+ + L  N         + N
Sbjct: 163 VSDLTPLA--NLSKLTTLKADDNKISDISPLAS---LPNLIEVHLKNNQISDV--SPLAN 215

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
           +++L  + L+    ++    + N  +    +           P ++ +  +  S +L++N
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYASPNLTWN 273

Query: 355 RLESK 359
                
Sbjct: 274 LTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 46/344 (13%), Positives = 102/344 (29%), Gaps = 105/344 (30%)

Query: 526 LSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL 585
              ++I+   PD    +L+    +    + +        D   + TL      ++    +
Sbjct: 4   TQPTAINVIFPD---PALANAIKIAAGKSNV-TDTVTQADLDGITTLSAFGTGVTTIEGV 59

Query: 586 I-PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF 644
              ++L  L+L  N ++  L+      +     +  L L  N L                
Sbjct: 60  QYLNNLIGLELKDNQIT-DLAPL--KNLTK---ITELELSGNPLKN-------------- 99

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
                        +++  L S++ L L   + +   P  L   + L++  +  N      
Sbjct: 100 ------------VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN------ 139

Query: 705 PTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA 764
                 +++ I                 L GL +L+ L + +  ++      +  LA ++
Sbjct: 140 ------QITNI---------------SPLAGLTNLQYLSIGNAQVSD-----LTPLANLS 173

Query: 765 KEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLK 824
           K                              L  L    N  S +I   + +L  L  + 
Sbjct: 174 K------------------------------LTTLKADDNKIS-DISP-LASLPNLIEVH 201

Query: 825 LSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFL 868
           L +N  S   P+      ++  +  ++  +  +      NL   
Sbjct: 202 LKNNQISDVSPL--ANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 48/250 (19%), Positives = 84/250 (33%), Gaps = 21/250 (8%)

Query: 162 IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS 221
           IP  +    N   L      L  +    F   S    L+ +++S  D+ +  +  + +N 
Sbjct: 24  IPSDL--PRNAIELRFVLTKLRVIQKGAF---SGFGDLEKIEISQNDVLEVIEADVFSN- 77

Query: 222 LHSLETLRFSGC-LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQV-LGLVNLVFLDL 279
           L  L  +R      L +I+P +F N  +L  L IS+       + +   +  +  V LD+
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDI 135

Query: 280 STNNFQGAVPD-AIQN-STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
             N     +   +    S     L L++N         FN     E      N L+    
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
                 +    LD+S  R+ S      + L+ LR+ +    K        L       + 
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK-------KLPTLEKLVA- 247

Query: 398 VLESLDLSNN 407
            L    L+  
Sbjct: 248 -LMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 52/256 (20%), Positives = 94/256 (36%), Gaps = 16/256 (6%)

Query: 126 LDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGL 185
                +     +IP  L    N + L         I         +L+ +++  N +  L
Sbjct: 14  FLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV--L 67

Query: 186 YVEDFGWVSHLSLLKHLDLSGV-DLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFA 244
            V +    S+L  L  + +    +L   +       +L +L+ L  S   + H+  +   
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 245 NFSSLVTLDISDNQFADSSIVNQVLGL-VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL 303
           +    V LDI DN    +   N  +GL    V L L+ N  Q  + ++  N T L  L+L
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNL 184

Query: 304 SR-NHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPR 362
           S  N+      D F+       L +S   +       L NL  +++      +   K+P 
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP- 240

Query: 363 AFKRLRHLRSVNLSGN 378
             ++L  L   +L+  
Sbjct: 241 TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.3 bits (211), Expect = 7e-18
 Identities = 50/306 (16%), Positives = 93/306 (30%), Gaps = 66/306 (21%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
                +     +P  +    +   L              F+ F DLE + +S N++   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 337 P-GSLGNLTSIKSLDLS-FNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
                 NL  +  + +   N L    P AF+ L +L+ + +S   +     + L      
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-----KHLPDVHKI 125

Query: 395 ASNVLESLDLSNNTLFGLLTNQI--GNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDV 452
            S     LD+ +N     +      G       L L+ N I   I  S    + L  L++
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNL 184

Query: 453 STNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
           S NN    L  + F   +                                          
Sbjct: 185 SDNNNLEELPNDVFHGAS------------------------------------------ 202

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETL 572
                    + LD+S + I  ++P   +++L ++   +    +   ++P L     L   
Sbjct: 203 -------GPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEA 251

Query: 573 DLSSNS 578
            L+  S
Sbjct: 252 SLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 13/215 (6%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQI-GNLSNLQFLDL 177
           G   L  +++S ND   +       +L  L  + I +A  +  I  +   NL NLQ+L +
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 178 RPNYLGGLYVEDFGWVSHLSLLKHLDLSG-VDLSKTSDGPLITNSLHSLETLRFSGCLLH 236
               +  L         H      LD+   +++                  L  +   + 
Sbjct: 112 SNTGIKHLPDVHK---IHSLQKVLLDIQDNINIHTIERNSF-VGLSFESVILWLNKNGIQ 167

Query: 237 HISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNS 295
            I   +F            +N      + N V  G    V LD+S           ++N 
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYN 330
             L+            +P    K + L   SL+Y 
Sbjct: 226 KKLRARSTYNL---KKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 43/287 (14%), Positives = 80/287 (27%), Gaps = 22/287 (7%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNL 457
              L      L  +       F +L+ +++S N++   I       L  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 458 NGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS----CFIGPQFPQ 513
              ++   F NL  L     S   +   +         Q   + +        I      
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 514 WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLET 571
            L      + L L+ + I   I +                N +  ++P+   + A+    
Sbjct: 151 GL--SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVI 206

Query: 572 LDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE 631
           LD+S   +         +L  L   S +    L           + L   +L   +    
Sbjct: 207 LDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL-----EKLVALMEASLTYPS---- 257

Query: 632 IPDCWMNW-SFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
               + NW   +  LH   N           T +  Q   L  +  S
Sbjct: 258 HCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNES 304

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 34/234 (14%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLS-S 576
           + I L    + +   I          +  + +S N +   I     ++  +L  + +  +
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 577 NSLSGPLPLI---PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP 633
           N+L    P       +L  L +S+  +   L         +S++  +L++ +N     I 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI---HSLQKVLLDIQDNINIHTIE 145

Query: 634 DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF 693
                           N F G L           IL L  N    +I  S  N T+L   
Sbjct: 146 R---------------NSFVG-LS------FESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 694 DISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
           ++S+N  +  +P  +    SG ++L +   + H      L  L  L+     + 
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 42/263 (15%), Positives = 84/263 (31%), Gaps = 20/263 (7%)

Query: 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
                  + ++     +P +   L      L   + +      +    L+ + +  N + 
Sbjct: 12  RVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQK---GAFSGFGDLEKIEISQNDVL 67

Query: 630 GEIP-DCWMNWSFLFFLHL-GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC 687
             I  D + N   L  + +   N+     P +   L +LQ L +          V   + 
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 688 TELRLFDISENEFVGNIPTWIGERLSG-IILLSLRANQFHGFFPPELCGLASLKILDLSS 746
            +  L DI +N  +  I       LS   ++L L  N           G    ++    +
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187

Query: 747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYF 806
           NNL  +     +  +G               L + + ++   P      LK L   + Y 
Sbjct: 188 NNLEELPNDVFHGASGPVI------------LDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 807 SGEIPSQVTNLVGLQTLKLSHNF 829
             ++P+ +  LV L    L++  
Sbjct: 236 LKKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 37/234 (15%), Positives = 63/234 (26%), Gaps = 37/234 (15%)

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS-LQNCTELRLFDISENEFVGN 703
           L             +      L+ + +  N     I      N  +L    I +   +  
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 704 IPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGM 763
           I     + L  +  L +                    +LD+  N     I R  N+  G+
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFVGL 152

Query: 764 AKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTL 823
           + E                               +L L+ N    EI +   N   L  L
Sbjct: 153 SFE-----------------------------SVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 824 KLSHNFFSGRIPVNM-GAMKSVEALDFSSNRLQ---GEIPKNMVNLEFLEIFNI 873
            LS N     +P ++         LD S  R+        +N+  L     +N+
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 37/198 (18%)

Query: 238 ISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTS 297
            + ++ A  +SL  + +++    D + +       N+  L ++  +     P  I   ++
Sbjct: 35  TANITEAQMNSLTYITLANINVTDLTGIEY---AHNIKDLTINNIHATNYNP--ISGLSN 89

Query: 298 LQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE 357
           L+ L +     +S      +    L  L +S++    SI   +  L  + S+DLS+N   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 358 SKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQI 417
           + I    K L  L+S+N+  + +                      D             I
Sbjct: 150 TDIM-PLKTLPELKSLNIQFDGVH---------------------DYRG----------I 177

Query: 418 GNFKNLDSLDLSFNNISG 435
            +F  L+ L      I G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 84.6 bits (210), Expect = 8e-19
 Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 40/216 (18%)

Query: 244 ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL 303
           + F + +   +  +  A+ +       + +L ++ L+  N        I+ + +++ L +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQ----MNSLTYITLANINVTDLTG--IEYAHNIKDLTI 73

Query: 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA 363
           +  H ++  P   +   +LE L +   ++      +L  LTS+  LD+S +  +  I   
Sbjct: 74  NNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNL 423
              L  + S++LS N    +I                                +     L
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP------------------------------LKTLPEL 161

Query: 424 DSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNG 459
            SL++ F+ +  +  +       L  L   +  + G
Sbjct: 162 KSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 7e-14
 Identities = 16/144 (11%), Positives = 49/144 (34%), Gaps = 11/144 (7%)

Query: 339 SLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV 398
           +   + S+  + L+   +        +   +++ + ++    +   + +  + +      
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT-NYNPISGLSN------ 89

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
           LE L +    +       +    +L  LD+S +     I   +  L  +  +D+S N   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 459 GTLSENHFANLTKLVGFDASGNSL 482
             +       L +L   +   + +
Sbjct: 150 TDIMP--LKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 16/169 (9%)

Query: 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFL 175
           +   +  L ++ L+  +   +     +    N+  L I+        P  I  LSNL+ L
Sbjct: 39  TEAQMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 176 DLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC-L 234
            +    +    + +    S L+ L  LD+S      +    +  N+L  + ++  S    
Sbjct: 94  RIMGKDVTSDKIPNL---SGLTSLTLLDISHSAHDDSILTKI--NTLPKVNSIDLSYNGA 148

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283
           +  I PL       L +L+I  +   D   +        L  L   +  
Sbjct: 149 ITDIMPLK--TLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 16/191 (8%)

Query: 144 SLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLD 203
           + +  +   + ++    I       +++L ++ L         V D   + +   +K L 
Sbjct: 21  TFKAYLNGLLGQSSTANITE---AQMNSLTYITLANIN-----VTDLTGIEYAHNIKDLT 72

Query: 204 LSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSS 263
           ++ +  +  +  P+  + L +LE LR  G  +      + +  +SL  LDIS +   DS 
Sbjct: 73  INNIHATNYN--PI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 264 IVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLE 323
           +   +  L  +  +DLS N         ++    L+ L++  +            F  L 
Sbjct: 129 LTK-INTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLN 184

Query: 324 YLSLSYNELQG 334
            L      + G
Sbjct: 185 QLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 32/187 (17%)

Query: 417 IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFD 476
                +L  + L+  N++    +      +++ L ++  +       N  + L+ L    
Sbjct: 40  EAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATNY---NPISGLSNLERLR 94

Query: 477 ASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIP 536
             G  +    +                           L     L  LD+S+S+  D+I 
Sbjct: 95  IMGKDVTSDKIPN-------------------------LSGLTSLTLLDISHSAHDDSIL 129

Query: 537 DRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLDL 595
            ++  +L ++N ++LSYN     I  L    +L++L++  + +     +     L  L  
Sbjct: 130 TKI-NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188

Query: 596 SSNFLSG 602
            S  + G
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
              ++  L ++            +  L NL  L I            +  L++L  LD+ 
Sbjct: 64  YAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI 238
            +      +      + L  +  +DLS       +D   +   L  L++L      +H  
Sbjct: 121 HSAHDDSILTKI---NTLPKVNSIDLSYN--GAITDIMPLKT-LPELKSLNIQFDGVHDY 174

Query: 239 SPLSFANFSSLVTLDISDNQFAD 261
             +   +F  L  L         
Sbjct: 175 RGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 9e-10
 Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 13/199 (6%)

Query: 554 NQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMN 613
           +Q    IPD           L  +S +       +SLT + L++  ++  L+      + 
Sbjct: 11  SQDNVNIPDSTFK-AYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLT-----GIE 63

Query: 614 NSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRG 673
            +  ++ L + N   +   P      S L  L +   D T +   +L  L+SL +L +  
Sbjct: 64  YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 674 NRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPEL 733
           +     I   +    ++   D+S N  + +I     + L  +  L+++ +  H +    +
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVHDYRG--I 177

Query: 734 CGLASLKILDLSSNNLTGV 752
                L  L   S  + G 
Sbjct: 178 EDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 48/215 (22%)

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEF--VG 702
             LG++        +   ++SL  + L     +  +   ++    ++   I+        
Sbjct: 28  GLLGQSSTA---NITEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN 82

Query: 703 NIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAG 762
            I       LS +  L +          P L GL SL +LD+S +     I   IN L  
Sbjct: 83  PI-----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 763 MAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQT 822
                                            +  +DLS N    +I   +  L  L++
Sbjct: 138 ---------------------------------VNSIDLSYNGAITDI-MPLKTLPELKS 163

Query: 823 LKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGE 857
           L +  +       +       +  L   S  + G+
Sbjct: 164 LNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 108 KIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIG 167
            +     P+L GL  L  LD+S++      +   + +L  +  +++S  G +  I   + 
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
            L  L+ L+++ +      V D+  +     L  L    
Sbjct: 157 TLPELKSLNIQFD-----GVHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 39/163 (23%)

Query: 712 LSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVD 771
           ++ +  ++L            +    ++K L +++ + T       N ++G++       
Sbjct: 43  MNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATN-----YNPISGLSN------ 89

Query: 772 KFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS 831
                                   L+ L +     + +    ++ L  L  L +SH+   
Sbjct: 90  ------------------------LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 832 GRIPVNMGAMKSVEALDFSSNRLQGEIP--KNMVNLEFLEIFN 872
             I   +  +  V ++D S N    +I   K +  L+ L I  
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 89.5 bits (222), Expect = 3e-19
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 224 SLETLRFSGCLLHHISP-LSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLST 281
               L  S   L  +    +    ++L +L +S N    + I ++    + NL +LDLS+
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSS 97

Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP---- 337
           N+          +  +L+ L L  NH      + F     L+ L LS N++    P    
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHL--RSVNLSGN 378
                L  +  LDLS N+L+       ++L       + L  N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 88.4 bits (219), Expect = 7e-19
 Identities = 46/193 (23%), Positives = 68/193 (35%), Gaps = 40/193 (20%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDW-FNKFIDLEYLSLSYNELQGSIP-GSLGNLT 344
            VP ++   +    LDLS N+ S    +W   +  +L  L LS+N L   I   +   + 
Sbjct: 32  NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 345 SIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDL 404
           +++ LDLS N L +     F  L+ L  + L  N +                       +
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV---------------------V 127

Query: 405 SNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP----LSLGQLSSLRYLDVSTNNLNGT 460
             N    +          L  L LS N IS   P        +L  L  LD+S+N L   
Sbjct: 128 DRNAFEDM--------AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-K 177

Query: 461 LSENHFANLTKLV 473
           L       L   V
Sbjct: 178 LPLTDLQKLPAWV 190

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 38/163 (23%), Positives = 54/163 (33%), Gaps = 10/163 (6%)

Query: 170 SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLR 229
           S    LDL  N L  L  E     + L+ L  L LS   L+  S        + +L  L 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWT--PTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLD 94

Query: 230 FSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAV 288
            S   LH +    F++  +L  L + +N      +       +  L  L LS N      
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 289 PDAIQNS---TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS 328
            + I++      L  LDLS N           K        L 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 37/179 (20%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 126 LDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGL 185
           LDLS+N+   ++       L NL  L +S      I       + NL++LDL  N+L  L
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103

Query: 186 YVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFAN 245
               F   S L  L+ L L    +            +  L+ L  S   +         +
Sbjct: 104 DEFLF---SDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 246 FSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS 304
            + L  L                        LDLS+N  +      +Q   +     L 
Sbjct: 159 GNKLPKLM----------------------LLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 42/202 (20%), Positives = 68/202 (33%), Gaps = 25/202 (12%)

Query: 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
             L  S   L      +PS    LDLS N LS   + +    + N   L  L L +N L+
Sbjct: 21  NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTN---LHSLLLSHNHLN 77

Query: 630 GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTE 689
               + ++    L +L L  N            L +L++L L  N        + ++  +
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
           L+   +S+N+                 +                  L  L +LDLSSN L
Sbjct: 138 LQKLYLSQNQ-----------------ISRFPVELIKDGN-----KLPKLMLLDLSSNKL 175

Query: 750 TGVIPRCINNLAGMAKEVLEVD 771
             +    +  L    K  L + 
Sbjct: 176 KKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 7/149 (4%)

Query: 114 NPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQ 173
             +   L +L  L LS+N    I        + NL YL++S      +      +L  L+
Sbjct: 57  EWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 174 FLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLIT-NSLHSLETLRFSG 232
            L L  N++  +    F     ++ L+ L LS   +S+     +   N L  L  L  S 
Sbjct: 116 VLLLYNNHIVVVDRNAF---EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 233 CLLHHISPLSFANFSSLV--TLDISDNQF 259
             L  +         + V   L + +N  
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 10/186 (5%)

Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTN 282
             + L      L  +   +F   + L  L ++DN+    ++   +   L NL  L ++ N
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDN 95

Query: 283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLG 341
             Q           +L  L L RN   S  P  F+    L YLSL YNELQ S+P G   
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
            LTS+K L L  N+L+     AF +L  L+++ L  N+L +      D         L+ 
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK-----LKM 209

Query: 402 LDLSNN 407
           L L  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
            +   LDL +N        A    T L+ L L+ N   +     F +  +LE L ++ N+
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 332 LQGSIP-GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDM 390
           LQ ++P G    L ++  L L  N+L+S  PR F  L  L  ++L  N+L      V D 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155

Query: 391 FSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYL 450
            ++     L+ L L NN L  +          L +L L  N +      +   L  L+ L
Sbjct: 156 LTS-----LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

Query: 451 DVSTN 455
            +  N
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.9 bits (208), Expect = 5e-18
 Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTS 345
           A+P  I      + LDL  N  SS     F++   L  L L+ N+LQ ++P G    L +
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS 405
           +++L ++ N+L++     F +L +L  + L  N+L     +V D  +      L  L L 
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-----LTYLSLG 141

Query: 406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENH 465
            N L  L         +L  L L  N +      +  +L+ L+ L +  N L   + E  
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200

Query: 466 FANLTKLVGFDASGN 480
           F +L KL       N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 52/181 (28%), Positives = 75/181 (41%), Gaps = 5/181 (2%)

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258
            K LDL    LS         + L  L  L  +   L  +    F    +L TL ++DN+
Sbjct: 39  TKKLDLQSNKLSSLPSKAF--HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 259 FADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN 317
               ++   V   LVNL  L L  N  +   P    + T L +L L  N   S     F+
Sbjct: 97  LQ--ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 318 KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG 377
           K   L+ L L  N+L+    G+   LT +K+L L  N+L+     AF  L  L+ + L  
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 378 N 378
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 41/189 (21%), Positives = 56/189 (29%), Gaps = 33/189 (17%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
            L  L  L L+ N  Q +    F                           L NL+ L + 
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKE-------------------------LKNLETLWVT 93

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI 238
            N L  L +  F     L  L  L L    L        + +SL  L  L      L  +
Sbjct: 94  DNKLQALPIGVF---DQLVNLAELRLDRNQLKSLPPR--VFDSLTKLTYLSLGYNELQSL 148

Query: 239 SPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTS 297
               F   +SL  L + +NQ     +       L  L  L L  N  +     A  +   
Sbjct: 149 PKGVFDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206

Query: 298 LQHLDLSRN 306
           L+ L L  N
Sbjct: 207 LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 55/201 (27%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 568 QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN- 626
              ++D SS  L+     IP+    LDL SN LS +L        +   +L++L L +N 
Sbjct: 17  NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLS-SLPS---KAFHRLTKLRLLYLNDNK 72

Query: 627 --TLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGT-LSSLQILHLRGNRFSGKIPV- 682
             TL   I     N   L  L + +N     LP  +   L +L  L L  N+    +P  
Sbjct: 73  LQTLPAGIFKELKN---LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPR 127

Query: 683 ---SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL 739
              SL   T L L     NE   ++P  + ++L+ +  L L  NQ           L  L
Sbjct: 128 VFDSLTKLTYLSL---GYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183

Query: 740 KILDLSSNNLTGVIPRCINNL 760
           K L L +N L  V     ++L
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSL 204

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 45/214 (21%)

Query: 422 NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNS 481
           +   LDL  N +S     +  +L+ LR L ++ N L  TL    F  L  L     + N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN- 95

Query: 482 LVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVK 541
                         +LQA+     F             +L  L L  + +  ++P R+  
Sbjct: 96  --------------KLQALP-IGVFDQL---------VNLAELRLDRNQLK-SLPPRVFD 130

Query: 542 SLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLIP-------SSLTT 592
           SL+++ YL+L YN++   +P    +    L+ L L +N L      +P       + L T
Sbjct: 131 SLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKR----VPEGAFDKLTELKT 185

Query: 593 LDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
           L L +N L   +        ++  +L++L L  N
Sbjct: 186 LKLDNNQLK-RVPE---GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 50/231 (21%), Positives = 84/231 (36%), Gaps = 62/231 (26%)

Query: 523 YLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLS 580
            LDL ++ +S ++P +    L+++  L L+ N++   +P     +   LETL ++ N L 
Sbjct: 41  KLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 581 GPLPL----IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW 636
             LP+       +L  L L  N L  +L   + + +     L  L+LG N L   +P   
Sbjct: 99  A-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTK---LTYLSLGYNELQ-SLP--- 149

Query: 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS 696
                       +  F          L+SL+ L L  N+                     
Sbjct: 150 ------------KGVFDK--------LTSLKELRLYNNQLK------------------- 170

Query: 697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
                  +P    ++L+ +  L L  NQ           L  LK+L L  N
Sbjct: 171 ------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 46/237 (19%), Positives = 84/237 (35%), Gaps = 22/237 (9%)

Query: 221 SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS 280
           +             +      +    +S+  +  +++       +     L N+  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFLN 76

Query: 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSL 340
            N      P  + N  +L  L L  N               L+ LSL +N +   I G L
Sbjct: 77  GNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DING-L 130

Query: 341 GNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLE 400
            +L  ++SL L  N++         RL  L +++L  N++S +I  +  +        L+
Sbjct: 131 VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTK------LQ 181

Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
           +L LS N +  L    +   KNLD L+L               L     +  +  +L
Sbjct: 182 NLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 22/239 (9%)

Query: 142 LGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKH 201
             +    +  N+ +      +      L+++  +    + +     +    + +L  +  
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-----KSVQGIQYLPNVTK 72

Query: 202 LDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD 261
           L L+G  L+     PL   +L +L  L      +  +S L   +   L +L +  N  +D
Sbjct: 73  LFLNGNKLTDIK--PL--ANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGISD 126

Query: 262 SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFID 321
              +N ++ L  L  L L  N         +   T L  L L  N  S  VP        
Sbjct: 127 ---INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179

Query: 322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
           L+ L LS N +   +   L  L ++  L+L      +K       L    +V  +   L
Sbjct: 180 LQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 23/245 (9%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
            +   L  +  +  + +D + +Q    +  L N+  L ++      I P  + NL NL +
Sbjct: 40  VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCL 234
           L L  N +     +D   +  L  LK L L    +S  +   L    L  LE+L      
Sbjct: 95  LFLDENKV-----KDLSSLKDLKKLKSLSLEHNGISDIN--GL--VHLPQLESLYLGNNK 145

Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
           +  I+ LS    + L TL + DNQ +D   +  + GL  L  L LS N    +   A+  
Sbjct: 146 ITDITVLS--RLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKN--HISDLRALAG 198

Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
             +L  L+L      +   +  +  +    +  +   L    P  + +    +  ++ ++
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 256

Query: 355 RLESK 359
             E  
Sbjct: 257 LPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 46/247 (18%)

Query: 365 KRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLD 424
                    NL    ++  ++Q     +   S  ++ +  +N+ +  +    I    N+ 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ-----NELNS--IDQIIANNSDIKSV--QGIQYLPNVT 71

Query: 425 SLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVL 484
            L L+ N ++  I   L  L +L +L +  N +   LS     +L KL       N   +
Sbjct: 72  KLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNG--I 124

Query: 485 KVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLS 544
             ++                          L+    L  L L N+ I+D      +  L+
Sbjct: 125 SDING-------------------------LVHLPQLESLYLGNNKITDITV---LSRLT 156

Query: 545 QINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLDLSSNFLSGT 603
           +++ L+L  NQI   I  L    +L+ L LS N +S    L    +L  L+L S      
Sbjct: 157 KLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 215

Query: 604 LSRFLCN 610
                 N
Sbjct: 216 PINHQSN 222

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 22/233 (9%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSL 579
             I  +L   S++D +       L+ I+ +  + + I   +  +     +  L L+ N L
Sbjct: 25  ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKL 80

Query: 580 SGPLPLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN 638
           +   PL    +L  L L  N +   LS        +  +L+ L+L +N +S +I    ++
Sbjct: 81  TDIKPLANLKNLGWLFLDENKVK-DLSSL-----KDLKKLKSLSLEHNGIS-DINGL-VH 132

Query: 639 WSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698
              L  L+LG N  T    T L  L+ L  L L  N+ S  I   L   T+L+   +S+N
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKN 188

Query: 699 EFVGNIPTWIG-ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
               +I        L  + +L L + +           L     +  +  +L 
Sbjct: 189 ----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 49/272 (18%), Positives = 91/272 (33%), Gaps = 47/272 (17%)

Query: 431 NNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPS 490
             I           +     ++   ++   +++N   ++ ++    A+ +   +K V   
Sbjct: 12  TPIKQIFSDD--AFAETIKDNLKKKSVTDAVTQNELNSIDQI---IANNSD--IKSVQGI 64

Query: 491 WTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLN 550
              P  +  + L+   +    P  L +  +L +L L  + + D      +K L ++  L+
Sbjct: 65  QYLP-NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLS 118

Query: 551 LSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLDLSSNFLSGTLSRFLC 609
           L +N I   I  L    QLE+L L +N ++    L   + L TL L  N +S  +     
Sbjct: 119 LEHNGI-SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPL-- 174

Query: 610 NEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQIL 669
                  +LQ L L  N +S                     D        L  L +L +L
Sbjct: 175 ---AGLTKLQNLYLSKNHIS---------------------DLRA-----LAGLKNLDVL 205

Query: 670 HLRGNRFSGKIPVSLQNCTELRLFDISENEFV 701
            L       K      N         ++   V
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 52/305 (17%), Positives = 95/305 (31%), Gaps = 81/305 (26%)

Query: 526 LSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL 585
              + I     D    + ++    NL    +       N+   ++ +  +++ +     +
Sbjct: 9   TVPTPIKQIFSD---DAFAETIKDNLKKKSV-TDAVTQNELNSIDQIIANNSDIKSVQGI 64

Query: 586 -IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF 644
               ++T L L+ N L+          + N   L  L L  N +                
Sbjct: 65  QYLPNVTKLFLNGNKLTDI------KPLANLKNLGWLFLDENKVK--------------- 103

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
                 D +      L  L  L+ L L  N  S  I   L +  +L    +  N      
Sbjct: 104 ------DLSS-----LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNN------ 144

Query: 705 PTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMA 764
                 +++ I +LS                L  L  L L  N ++      I  LAG+ 
Sbjct: 145 ------KITDITVLS---------------RLTKLDTLSLEDNQISD-----IVPLAGLT 178

Query: 765 KEVLEVDKFFEDALIVYKKKVVKY-PIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTL 823
           K  L+        L + K  +     +     L VL+L +     +  +  +NLV   T+
Sbjct: 179 K--LQN-------LYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 824 KLSHN 828
           K +  
Sbjct: 230 KNTDG 234

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 85.5 bits (212), Expect = 6e-18
 Identities = 57/356 (16%), Positives = 111/356 (31%), Gaps = 60/356 (16%)

Query: 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPN 180
             +  LDLS N                    N+     V +I       +++  L+L  N
Sbjct: 22  HGVTSLDLSLN--------------------NLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 181 YLGGLYVEDFGWV--SHLSLLKHLDLSGVDLSKTSDGPL---ITNSLHSLETLRFSGCLL 235
            LG    ++   +  +  + +  L+LSG  LS  S   L   +     ++  L       
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 236 -----HHISPLSFANFSSLVTLDISDNQFADSSIVN--QVLGLVN--LVFLDLSTNNFQG 286
                           +S+ +L++  N     S     Q+L  +   +  L+L  NN   
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 287 AVPDAI-----QNSTSLQHLDLSRNHFSSSVPDWFNKFI-----DLEYLSLSYNELQGS- 335
                +         S+  LDLS N                    +  L+L  N L G  
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 336 ---IPGSLGNLTSIKSLDLSFNRLESK-------IPRAFKRLRHLRSVNLSGNKLSQEIS 385
              +     +L  ++++ L ++ +++        +  AF  ++ +  V+ +G ++    S
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301

Query: 386 QVLDMFSACASNVLESLDLSNNTLFGLLTNQI-----GNFKNLDSLDLSFNNISGH 436
             +       S   +   L N  L     +Q           L     +   +  H
Sbjct: 302 IPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 58/335 (17%), Positives = 107/335 (31%), Gaps = 45/335 (13%)

Query: 168 NLSNLQFLDLRPNYLGGLYVEDFGWV--SHLSLLKHLDLSGVDLSKTSDGPL---ITNSL 222
               +  LDL  N L  +   +      +  + +  L+LSG  L   +   L   +    
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 223 HSLETLRFSGCLLHHISPLSFANF-----SSLVTLDISDNQFADSSIVN--QVLGLVN-- 273
            ++ +L  SG  L + S             ++  LD+  N F+  S     Q    +   
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 274 LVFLDLSTNNF--QGAVP--DAIQN-STSLQHLDLSRNHFSSSVPDWFNKFID-----LE 323
           +  L+L  N+   + +      +     ++  L+L  N+ +S       KF+      + 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 324 YLSLSYNELQGSIPGSLG-----NLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVN 374
            L LS N L       L          + SL+L  N L       +      L+HL++V 
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 375 LSGNKLSQE-ISQVLDMFSACASN-VLESLDLSNN--------TLFGLLTNQIGNFKNLD 424
           L  + +      Q   + +A  +   +  +D +           +  L+    G      
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPS 319

Query: 425 SLDLSFNNISGHIPLS--LGQLSSLRYLDVSTNNL 457
            L+        H      L     LR    +   L
Sbjct: 320 LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 73.6 bits (181), Expect = 5e-14
 Identities = 57/374 (15%), Positives = 117/374 (31%), Gaps = 80/374 (21%)

Query: 199 LKHLDLSGVDLSKTSDGPL---ITNSLHSLETLRFSGCLL-----HHISPLSFANFSSLV 250
           +  LDLS  +L   S   L     N+  S+ +L  SG  L       +  +  A  +++ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 251 TLDISDNQFADSSIVN--QVLGLVN--LVFLDLSTNNFQGAVPDAI-----QNSTSLQHL 301
           +L++S N  +  S     + L  +   +  LDL  N+F                 S+  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 302 DLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNL-TSIKSLDLSFNRLESK- 359
           +L  N                + L              L  +  ++ SL+L  N L SK 
Sbjct: 144 NLRGNDLGIK---------SSDELI-----------QILAAIPANVNSLNLRGNNLASKN 183

Query: 360 ---IPRAFKRL-RHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL----FG 411
              + +    +   + S++LS N L  +    L    +   N + SL+L  N L      
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243

Query: 412 LLTNQIGNFKNLDSLDLSFNNISG-------HIPLSLGQLSSLRYLDVSTNNLNGTLSEN 464
            L     + K+L ++ L ++ +          +  +   +  +  +D +   +       
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI------- 296

Query: 465 HFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN----- 519
                           S  + + +       +     L +  +          ++     
Sbjct: 297 --------------HPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD 342

Query: 520 HLIYLDLSNSSISD 533
            L     +   + +
Sbjct: 343 ELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 64/369 (17%), Positives = 124/369 (33%), Gaps = 81/369 (21%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
            V +       +  LDLS N+  S              L                   S+
Sbjct: 13  PVEEFTSIPHGVTSLDLSLNNLYSI---------STVELI----------QAFANTPASV 53

Query: 347 KSLDLSFNRLESK----IPRAFKRL-RHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
            SL+LS N L  K    + +    +  ++ S+NLSGN LS + S  L    A     +  
Sbjct: 54  TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113

Query: 402 LDLSNNTLFGLLTNQIG-----NFKNLDSLDLSFNNISGHIPLSLGQL-----SSLRYLD 451
           LDL  N      +++          ++ SL+L  N++       L Q+     +++  L+
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173

Query: 452 VSTNNLNGTLSENHFANLTKLVGFDASGNSL--VLKVVSPSWTPPFQLQAIGLSSCFIGP 509
           +  NNL                    +   L   L       + P  + ++ LS+  +G 
Sbjct: 174 LRGNNLA-----------------SKNCAELAKFLA------SIPASVTSLDLSANLLGL 210

Query: 510 QFPQWLLS-----QNHLIYLDLSNSSISDTIPDRLVKSL---SQINYLNLSYNQIFGQIP 561
           +    L        NH++ L+L  + +     + L         +  + L Y+ +     
Sbjct: 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV----- 265

Query: 562 DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEM-NNSMRLQV 620
              + ++ +   L +   +         +  +D +   +  + S  + N +   S +  V
Sbjct: 266 --KNMSKEQCKALGAAFPN------IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 621 LNLGNNTLS 629
            +L N  L 
Sbjct: 318 PSLLNQCLI 326

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 65/411 (15%), Positives = 127/411 (30%), Gaps = 95/411 (23%)

Query: 374 NLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL-----FGLLTNQIGNFKNLDSLDL 428
            L+ +  S  + +          + + SLDLS N L       L+        ++ SL+L
Sbjct: 4   KLTLHPGSNPVEEFT-----SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNL 58

Query: 429 SFNNISGHIPLSLGQL-----SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL- 482
           S N++       L Q+     +++  L++S N L+                   S + L 
Sbjct: 59  SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS-----------------YKSSDELV 101

Query: 483 -VLKVVSPSWTPPFQLQAIGLSSCFIGPQ----FPQWLLSQN-HLIYLDLSNSSISDTIP 536
             L         PF +  + L       +    F Q   +    +  L+L  + +     
Sbjct: 102 KTLA------AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155

Query: 537 DRLVKSLSQIN----YLNLSYNQIFGQ-IPDLNDA-----AQLETLDLSSNSLSGP---- 582
           D L++ L+ I      LNL  N +  +   +L        A + +LDLS+N L       
Sbjct: 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215

Query: 583 ----LPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN 638
                  IP+ + +L+L  N L G     L    ++   LQ + L  + +     +    
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ--- 272

Query: 639 WSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698
                            L  +   +  + ++   G        + + N            
Sbjct: 273 --------------CKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
             +     +  +  + I  L++                  L+    +   L
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNI---------------PDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 49/261 (18%), Positives = 82/261 (31%), Gaps = 64/261 (24%)

Query: 515 LLSQN-HLIYLDLSNSSISDT----IPDRLVKSLSQINYLNLSYNQIFGQ-IPDLNDA-- 566
             S    +  LDLS +++       +      + + +  LNLS N +  +   +L     
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 567 ---AQLETLDLSSNS--------LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEM-NN 614
              A + +L+LS N         L   L  IP ++T LDL  N  S   S        N 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN 674
              +  LNL  N L  +                  ++    L       +++  L+LRGN
Sbjct: 137 PASITSLNLRGNDLGIK----------------SSDELIQILAAIP---ANVNSLNLRGN 177

Query: 675 RFSGKIPVSL-----QNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFF 729
             + K    L          +   D+S N         +G +    +     +       
Sbjct: 178 NLASKNCAELAKFLASIPASVTSLDLSANL--------LGLKSYAELAYIFSSIP----- 224

Query: 730 PPELCGLASLKILDLSSNNLT 750
                    +  L+L  N L 
Sbjct: 225 -------NHVVSLNLCLNCLH 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 15/215 (6%)

Query: 218 ITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVF 276
           I +   S +TL+     L  I   +F+N  ++  + +S +      + +     L  +  
Sbjct: 26  IPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-TLQQLESHSFYNLSKVTH 84

Query: 277 LDLSTNNFQGAVP-DAIQNSTSLQHLDLSRNHFSSSVPD--WFNKFIDLEYLSLSYNELQ 333
           +++        +  DA++    L+ L +         PD            L ++ N   
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYM 143

Query: 334 GSIP-GSLGNLTS-IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
            SIP  +   L +   +L L  N   S    AF   + L +V L+ NK    I +  D F
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDK--DAF 200

Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSL 426
               S     LD+S  ++  L        ++L  L
Sbjct: 201 GGVYSG-PSLLDVSQTSVTAL---PSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 12/213 (5%)

Query: 169 LSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG-VDLSKTSDGPLITNSLHSLET 227
             + Q L L   +L  +    F   S+L  +  + +S  V L +         +L  +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAF---SNLPNISRIYVSIDVTLQQLESHSF--YNLSKVTH 84

Query: 228 LRFSG-CLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG 286
           +       L +I P +      L  L I +        + +V        L+++ N +  
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 287 AVP-DAIQN-STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNL 343
           ++P +A Q        L L  N F +SV  +      L+ + L+ N+    I   + G +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 344 TS-IKSLDLSFNRLESKIPRAFKRLRHLRSVNL 375
            S    LD+S   + +   +  + L+ L + N 
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 34/281 (12%), Positives = 81/281 (28%), Gaps = 65/281 (23%)

Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384
             ++  ++Q  IP    +  +   L L    L +    AF  L ++  + +S +   Q++
Sbjct: 16  FRVTCKDIQ-RIPSLPPSTQT---LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQI-GNFKNLDSLDLSFNNISGHIP--LSL 441
                 F   +   +  +++ N      +          L  L +    +    P    +
Sbjct: 72  ES--HSFYNLSK--VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKV 126

Query: 442 GQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIG 501
                   L+++ N    ++  N F  L                                
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLC------------------------------- 155

Query: 502 LSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
                            N  + L L N+  + ++      + ++++ + L+ N+    I 
Sbjct: 156 -----------------NETLTLKLYNNGFT-SVQGYAF-NGTKLDAVYLNKNKYLTVID 196

Query: 562 D---LNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF 599
                   +    LD+S  S++         L  L   + +
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 29/189 (15%), Positives = 73/189 (38%), Gaps = 11/189 (5%)

Query: 422 NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNS 481
           +  +L L   ++      +   L ++  + VS +     L  + F NL+K+   +     
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 482 LVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQ--WLLSQNHLIYLDLSNSSISDTIPDRL 539
            +  +   +      L+ +G+ +  +   FP    + S +    L+++++    +IP   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 540 VKSL-SQINYLNLSYNQIFGQIPDLN-DAAQLETLDLSSNSLSGPLPL-----IPSSLTT 592
            + L ++   L L  N     +     +  +L+ + L+ N     +       + S  + 
Sbjct: 151 FQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 593 LDLSSNFLS 601
           LD+S   ++
Sbjct: 210 LDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 35/214 (16%)

Query: 119 GLKHLIHLDLSYND-FQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQI-GNLSNLQFLD 176
            L ++  + +S +   Q ++   F   L  + ++ I     +  I       L  L+FL 
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 177 LRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH 236
           +    L      D   V    +   L+++                             + 
Sbjct: 112 IFNTGLK--MFPDLTKVYSTDIFFILEIT-------------------------DNPYMT 144

Query: 237 HISPLSFANFSS-LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVP-DAIQN 294
            I   +F    +  +TL + +N F  +S+         L  + L+ N +   +  DA   
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGF--TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 295 -STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSL 327
             +    LD+S+   ++          +L   + 
Sbjct: 203 VYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 37/234 (15%), Positives = 70/234 (29%), Gaps = 40/234 (17%)

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPV-SLQNCTELRLFDISENEFVGN 703
           L L E         +   L ++  +++  +    ++   S  N +++   +I     +  
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 704 IPTWIGERLSGIILLSLRANQFHGFFPPE--LCGLASLKILDLSSNNLTGVIPRCINNLA 761
           I     + L  +  L +        FP    +       IL+++ N     IP   N   
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV--NAFQ 152

Query: 762 GMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQ 821
           G+  E                                L L  N F+  +     N   L 
Sbjct: 153 GLCNE-----------------------------TLTLKLYNNGFT-SVQGYAFNGTKLD 182

Query: 822 TLKLSHNFFSGRIPVNM--GAMKSVEALDFSSNRLQGEIPKN-MVNLEFLEIFN 872
            + L+ N +   I  +   G       LD S   +   +P   + +L+ L   N
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 47/227 (20%)

Query: 548 YLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLIP-------SSLTTLDLSSN 598
            L L    +   IP    ++   +  + +S +     L  +        S +T +++ + 
Sbjct: 35  TLKLIETHL-RTIPSHAFSNLPNISRIYVSID---VTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWS--FLFFLHLGENDFTGNL 656
                +      E+     L+ L + N  L    PD    +S    F L + +N +  ++
Sbjct: 91  RNLTYIDPDALKELPL---LKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 657 PTSL--GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSG 714
           P +   G  +    L L  N F+  +     N T+L    +++N+++  I          
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID--------- 196

Query: 715 IILLSLRANQFHGFFPPELCGLAS-LKILDLSSNNLTGVIPRCINNL 760
                   + F G        + S   +LD+S  ++T +  + + +L
Sbjct: 197 -------KDAFGG--------VYSGPSLLDVSQTSVTALPSKGLEHL 228

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 81.1 bits (200), Expect = 6e-16
 Identities = 60/428 (14%), Positives = 136/428 (31%), Gaps = 49/428 (11%)

Query: 193 VSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFA----NFSS 248
            S  + L+ + L  + ++      LI  S  + + L  S C     S    A       +
Sbjct: 101 SSSYTWLEEIRLKRMVVT-DDCLELIAKSFKNFKVLVLSSC--EGFSTDGLAAIAATCRN 157

Query: 249 LVTLDISDNQF---ADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDA-----IQNSTSLQH 300
           L  LD+ ++     +   + +      +LV L++S       V  +     +    +L+ 
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS--CLASEVSFSALERLVTRCPNLKS 215

Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSY------NELQGSIPGSLGNLTSIKSLDLSFN 354
           L L+R      +     +   LE L           ++   +  +L     ++ L   ++
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT 414
            + + +P  +     L ++NLS   +      ++ +   C    L+ L + +      L 
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSY--DLVKLLCQCPK--LQRLWVLDYIEDAGLE 331

Query: 415 NQIGNFKNLDSLDLS---------FNNISGHIPLSLGQ-LSSLRYLDVSTNNL-NGTLSE 463
                 K+L  L +             ++    +S+      L  +      + N  L  
Sbjct: 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391

Query: 464 --NHFANLTKLVGFDASGNSLVLKVVSPSWTPPF-------QLQAIGLSSCFIGPQFPQW 514
              +  N+T+         +     + P              L+ + LS       F   
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI 451

Query: 515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIF--GQIPDLNDAAQLETL 572
                 +  L ++ +  SD     ++     +  L +          + + +    + +L
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511

Query: 573 DLSSNSLS 580
            +SS S+S
Sbjct: 512 WMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.8 bits (168), Expect = 4e-12
 Identities = 69/513 (13%), Positives = 143/513 (27%), Gaps = 75/513 (14%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLN------ISRAGFVGIIPHQIGNLSNL 172
               L  + L         +     S +N   L        S  G   I         NL
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA----ATCRNL 158

Query: 173 QFLDLRPNYLGGLYVEDFGWVSH-LSLLKHLDLSGVDLSKTSDG-PLITNSLHSLETLRF 230
           + LDLR + +  +            + L  L++S +    +      +     +L++L+ 
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 231 SGCLLHHISPLSFANFSSLVTLDISD-----NQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
           +  +              L  L              S +   + G   L  L    +   
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLT 344
             +P      + L  L+LS     S  +     +   L+ L +        +        
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 345 SIKSLDLSFNRLESKIPRA----------FKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
            ++ L +  +      P                  L SV     +++      L   +  
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA---ALITIARN 395

Query: 395 ASNVLESLDLSNNTLFGL--LTNQIG---------NFKNLDSLDLSFNNISGHIPLSLGQ 443
             N +    L          LT +           + K+L  L LS   ++  +   +G 
Sbjct: 396 RPN-MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGT 453

Query: 444 -LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGL 502
               +  L V+            FA  +  +G     +                L+ + +
Sbjct: 454 YAKKMEMLSVA------------FAGDS-DLGMHHVLSGCD------------SLRKLEI 488

Query: 503 SSCFIGPQFPQWLLSQ-NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
             C  G +      S+   +  L +S+ S+S      L + + ++N   +         P
Sbjct: 489 RDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRP 548

Query: 562 DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLD 594
           +     ++        +++GP   +P  +  +D
Sbjct: 549 ESCPVERV----FIYRTVAGPRFDMPGFVWNMD 577

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 44/312 (14%), Positives = 76/312 (24%), Gaps = 54/312 (17%)

Query: 444 LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLS 503
           +       V   N              K+   +  G               F L   G  
Sbjct: 40  IERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKP---------HFADFNLVPDGWG 90

Query: 504 SCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDL 563
             ++ P       S   L  + L    ++D   + + KS      L LS  + F      
Sbjct: 91  G-YVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS----- 144

Query: 564 NDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNL 623
                         +++        +L  LDL  + +      +L +  +    L  LN+
Sbjct: 145 ---------TDGLAAIAATCR----NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191

Query: 624 GNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS 683
                           SF     L                 +L+ L L       K+   
Sbjct: 192 SC---------LASEVSFSALERLVTR------------CPNLKSLKLNRAVPLEKLATL 230

Query: 684 LQNCTELRLFDISENEFVGNIPTWIG-----ERLSGIILLSLRANQFHGFFPPELCGLAS 738
           LQ   +L                + G          +  LS   +    + P      + 
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 739 LKILDLSSNNLT 750
           L  L+LS   + 
Sbjct: 291 LTTLNLSYATVQ 302

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 76.6 bits (189), Expect = 7e-16
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 247 SSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSR 305
            ++  + +  N      I          L  +DLS N      PDA Q   SL  L L  
Sbjct: 32  ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 306 NHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFNRLESKIPRAF 364
           N  +      F     L+ L L+ N++   +   +  +L ++  L L  N+L++     F
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 365 KRLRHLRSVNLSGN 378
             LR +++++L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           + L  N  +   P A      L+ +DLS N  S   PD F     L  L L  N++    
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACAS 396
                 L S++ L L+ N++      AF+ L +L  ++L  NKL    +     FS   +
Sbjct: 97  KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ---TIAKGTFSPLRA 153

Query: 397 NVLESLDLSNN 407
             ++++ L+ N
Sbjct: 154 --IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
            +P  +    ++  + L +N      P  F+ +  L  + LS N++    P +   L S+
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
            SL L  N++       F+ L  L+ + L+ NK++                 L  L L +
Sbjct: 83  NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN-----LNLLSLYD 137

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFN 431
           N L  +        + + ++ L+ N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 8/140 (5%)

Query: 170 SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLR 229
             +  + L  N +  +    F   S    L+ +DLS   +S+ +        L SL +L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAF---SPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLV 86

Query: 230 FSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAV 288
             G  +  +    F    SL  L ++ N+   + +       L NL  L L  N  Q   
Sbjct: 87  LYGNKITELPKSLFEGLFSLQLLLLNANKI--NCLRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 289 PDAIQNSTSLQHLDLSRNHF 308
                   ++Q + L++N F
Sbjct: 145 KGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 32/140 (22%)

Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
            +I  + L  N ++   P AF   + LR ++LS N++S             A +  + L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-----------ELAPDAFQGL- 79

Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL-GQLSSLRYLDVSTNNLNGTLS 462
                            ++L+SL L  N I+  +P SL   L SL+ L ++ N +N  L 
Sbjct: 80  -----------------RSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLR 120

Query: 463 ENHFANLTKLVGFDASGNSL 482
            + F +L  L       N L
Sbjct: 121 VDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 29/153 (18%)

Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSG 581
           + L  ++I   IP        ++  ++LS NQI  ++          L +L L  N ++ 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 582 PLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSF 641
               +   L                           LQ+L L  N ++    D + +   
Sbjct: 95  LPKSLFEGLF-------------------------SLQLLLLNANKINCLRVDAFQDLHN 129

Query: 642 LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN 674
           L  L L +N        +   L ++Q +HL  N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 33/186 (17%), Positives = 54/186 (29%), Gaps = 65/186 (34%)

Query: 422 NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNS 481
            +  + L  N I    P +      LR +D+S N ++  L+ + F  L            
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR----------- 80

Query: 482 LVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVK 541
                                                  L  L L  + I+  +P  L +
Sbjct: 81  --------------------------------------SLNSLVLYGNKIT-ELPKSLFE 101

Query: 542 SLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLIP-------SSLTT 592
            L  +  L L+ N+I   +      D   L  L L  N L      I         ++ T
Sbjct: 102 GLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQT----IAKGTFSPLRAIQT 156

Query: 593 LDLSSN 598
           + L+ N
Sbjct: 157 MHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 30/141 (21%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
             K L  +DLS N    +    F G                         L +L  L L 
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG-------------------------LRSLNSLVLY 88

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI 238
            N +  L    F     L  L+ L L+   ++           LH+L  L      L  I
Sbjct: 89  GNKITELPKSLF---EGLFSLQLLLLNANKINCLRVDAF--QDLHNLNLLSLYDNKLQTI 143

Query: 239 SPLSFANFSSLVTLDISDNQF 259
           +  +F+   ++ T+ ++ N F
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 31/178 (17%)

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
            +D     L+     +P ++T + L  N +   +     +       L+ ++L NN +S 
Sbjct: 15  IVDCRGKGLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKK---LRRIDLSNNQIS- 69

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSL-QNCTE 689
                           L  + F G        L SL  L L GN+ + ++P SL +    
Sbjct: 70  ---------------ELAPDAFQG--------LRSLNSLVLYGNKIT-ELPKSLFEGLFS 105

Query: 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
           L+L  ++ N+ +  +     + L  + LLSL  N+           L +++ + L+ N
Sbjct: 106 LQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 79.4 bits (196), Expect = 9e-16
 Identities = 58/333 (17%), Positives = 111/333 (33%), Gaps = 63/333 (18%)

Query: 116 SLLGLKHLIHLDLSYNDF--QGIQ-IPRFLGSLENLMYLNISRAGFVGIIPHQIG----- 167
            LL    +  + LS N    +  + +   + S ++L     S   F G +  +I      
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRL 85

Query: 168 ------NLSNLQFLDLRPNYLGGLYVEDFG-WVSHLSLLKHLDLSGVDLSKTSDGPLITN 220
                     L  + L  N  G    E    ++S  + L+HL L               N
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN-------------N 132

Query: 221 SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLV---NLVFL 277
            L      + +  L          N   L ++    N+  + S+            L  +
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 278 DLSTNNF-----QGAVPDAIQNSTSLQHLDLSRNHF--------SSSVPDWFNKFIDLEY 324
            +  N       +  + + +     L+ LDL  N F        + ++  W N    L  
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN----LRE 248

Query: 325 LSLSYNELQG----SIPGSLGNL--TSIKSLDLSFNRLESK----IPRAFKR-LRHLRSV 373
           L L+   L      ++  +   L    +++L L +N +E      +       +  L  +
Sbjct: 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 374 NLSGNKLSQE---ISQVLDMFSACASNVLESLD 403
            L+GN+ S+E   + ++ ++FS      L+ LD
Sbjct: 309 ELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 57/359 (15%), Positives = 109/359 (30%), Gaps = 78/359 (21%)

Query: 340 LGNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQEISQVL-DMFSAC 394
           +    SI+   L  + + ++    +         ++ + LSGN +  E ++ L +  ++ 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 395 ASNVLESLDLSNNTL----------FGLLTNQIGNFKNLDSLDLSFNNIS--GHIPLS-- 440
               LE  + S+               LL   +     L ++ LS N        PL   
Sbjct: 60  KD--LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 441 LGQLSSLRYLDVSTNNLN--------GTLSENH----FANLTKLVGFDASGNSL------ 482
           L + + L +L +  N L           L E        N   L       N L      
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 483 ----VLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ-----NHLIYLDLSNSSISD 533
                 +           L  + +    I P+  + LL +       L  LDL +++ + 
Sbjct: 178 EWAKTFQSHR-------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 534 T----IPDRLVKSLSQINYLNLSYNQI-------FGQIPDLNDAAQLETLDLSSNSLSGP 582
                +   L KS   +  L L+   +               +   L+TL L  N +   
Sbjct: 231 LGSSALAIAL-KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

Query: 583 --------LPLIPSSLTTLDLSSNFLS--GTLSRFLCNEMNNSMRLQVLNLGNNTLSGE 631
                   +      L  L+L+ N  S    +   +    +   R ++  L +     +
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 49/331 (14%), Positives = 95/331 (28%), Gaps = 75/331 (22%)

Query: 277 LDLSTNNF--QGAVP--DAIQNSTSLQHLDLSRNHFS----SSVPDWFNKFIDLEYLSLS 328
             L  +    +        +    S++ + LS N         + +      DLE    S
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 329 YNELQ----------GSIPGSLGNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVN 374
                            +  +L     + ++ LS N         +     +   L  + 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 375 LSGNKLS----QEISQVL----DMFSACASNVLESLDLSNNTLFG----LLTNQIGNFKN 422
           L  N L      +I++ L        A  +  L S+    N L             + + 
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188

Query: 423 LDSLDLSFNNI-----SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDA 477
           L ++ +  N I        +   L     L+ LD+  N                      
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-----------------HL 231

Query: 478 SGNSL--VLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL------LSQNHLIYLDLSNS 529
             ++L   LK     W     L+ +GL+ C +  +    +      L    L  L L  +
Sbjct: 232 GSSALAIALKS----WP---NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284

Query: 530 SISD----TIPDRLVKSLSQINYLNLSYNQI 556
            I      T+   + + +  + +L L+ N+ 
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 45/303 (14%), Positives = 94/303 (31%), Gaps = 70/303 (23%)

Query: 497 LQAIGLSSCFIGPQ----FPQWLLSQNHLIYLDLSNSSISDT----IPDRLVKSLSQINY 548
           ++   L    I  +        LL  + +  + LS ++I       + + +  S   +  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEI 64

Query: 549 LNLSYNQIFGQIPD------------LNDAAQLETLDLSSNSLS-------GPLPLIPSS 589
              S     G++ D            L    +L T+ LS N+                + 
Sbjct: 65  AEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 590 LTTLDLSSN--------FLSGTLSRFLCN-EMNNSMRLQVLNLGNNTLSGE----IPDCW 636
           L  L L +N         ++  L     N +  N+  L+ +  G N L           +
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 637 MNWSFLFFLHLGENDFT-----GNLPTSLGTLSSLQILHLRGNRFSGK----IPVSLQNC 687
            +   L  + + +N          L   L     L++L L+ N F+      + ++L++ 
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 688 TELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
             LR   +++          +  R +  ++ +                   L+ L L  N
Sbjct: 244 PNLRELGLNDCL--------LSARGAAAVVDAFS-----------KLENIGLQTLRLQYN 284

Query: 748 NLT 750
            + 
Sbjct: 285 EIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 48/297 (16%), Positives = 82/297 (27%), Gaps = 88/297 (29%)

Query: 113 INPSLLGLKHLIHLDLSYNDF--QGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLS 170
           +   L     L HL L  N    Q                  I+RA     +  +  N  
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAK--------------IARALQELAVNKKAKNAP 159

Query: 171 NLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRF 230
            L+ +    N L                    + S  + +KT      ++    L T++ 
Sbjct: 160 PLRSIICGRNRLE-------------------NGSMKEWAKT----FQSHR--LLHTVKM 194

Query: 231 SGCLLHH--ISPL---SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
               +    I  L     A    L  LD+ DN F                          
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-------------------- 234

Query: 286 GAVPDAIQNSTSLQHLDLSRN--------HFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
            A+  A+++  +L+ L L+              +     N    L+ L L YNE++    
Sbjct: 235 -ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI--GLQTLRLQYNEIELDAV 291

Query: 338 GSLG-----NLTSIKSLDLSFNRLE------SKIPRAFKRLRHLRSVNLSGNKLSQE 383
            +L       +  +  L+L+ NR         +I   F          L   +   +
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 32/181 (17%)

Query: 589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE----IPDCWMNWSFLFF 644
           S+    L  + ++    + +   +     ++ + L  NT+  E    + +   +   L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 645 LHLGENDFTGNLPT-----------SLGTLSSLQILHLRGNRFSGK----IPVSLQNCTE 689
               +  FTG +             +L     L  + L  N F       +   L   T 
Sbjct: 65  AEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
           L    +  N         +G +    I  +L+    +     +      L+ +    N L
Sbjct: 124 LEHLYLHNNG--------LGPQAGAKIARALQELAVNK----KAKNAPPLRSIICGRNRL 171

Query: 750 T 750
            
Sbjct: 172 E 172

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 47/325 (14%), Positives = 94/325 (28%), Gaps = 96/325 (29%)

Query: 569 LETLDLSSNSLS--GPLPLI-----PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVL 621
           +E   L  ++++      +        S+  + LS N +    +R+L   + +   L++ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 622 NLGNNT---LSGEIPDCW-------MNWSFLFFLHLGENDFTGN----LPTSLGTLSSLQ 667
              +     +  EIP+         +    L  + L +N F       L   L   + L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 668 ILHLRGNRFS-------------GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSG 714
            L+L  N                  +    +N   LR      N         +      
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--------LEN--GS 175

Query: 715 IILLS--LRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK 772
           +   +   ++++              L  + +  N +            G+         
Sbjct: 176 MKEWAKTFQSHR-------------LLHTVKMVQNGIRP---------EGIEH------- 206

Query: 773 FFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE----IPSQVTNLVGLQTLKLSHN 828
              + L   ++            LKVLDL  N F+      +   + +   L+ L L+  
Sbjct: 207 LLLEGLAYCQE------------LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 829 FFSGRIPVNMGAMKSVEALDFSSNR 853
             S       GA   V+A     N 
Sbjct: 255 LLS-----ARGAAAVVDAFSKLENI 274

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 251 TLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS 310
            L +++N+F           L  L  ++ S N        A + ++ +  + L+ N   +
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 311 SVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRH 369
                F     L+ L L  N +   +   S   L+S++ L L  N++ +  P AF  L  
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 370 LRSVNLSGN 378
           L ++NL  N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 277 LDLSTNNFQGAVPDAI-QNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
           L L+ N F       I +    L+ ++ S N  +      F     +  + L+ N L+  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 336 IPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
                  L S+K+L L  NR+      +F  L  +R ++L  N+++   +     F    
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT---TVAPGAFDTLH 153

Query: 396 SNVLESLDLSNN 407
           S  L +L+L  N
Sbjct: 154 S--LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 7/140 (5%)

Query: 170 SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLR 229
                L L  N    L  E  G    L  L+ ++ S   ++   +G         +  + 
Sbjct: 32  QYTAELRLNNNEFTVL--EATGIFKKLPQLRKINFSNNKITDIEEGAF--EGASGVNEIL 87

Query: 230 FSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAV 288
            +   L ++    F    SL TL +  N+   + + N    GL ++  L L  N      
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 289 PDAIQNSTSLQHLDLSRNHF 308
           P A     SL  L+L  N F
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 344 TSIKSLDLSFNRLESKIPRA-FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESL 402
                L L+ N          FK+L  LR +N S NK++       +  S      +  +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-----VNEI 86

Query: 403 DLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLS 462
            L++N L  +        ++L +L L  N I+     S   LSS+R L +  N +  T++
Sbjct: 87  LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 463 ENHFANLTKL 472
              F  L  L
Sbjct: 146 PGAFDTLHSL 155

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 126 LDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGL 185
           L L+ N+F  ++       L  L  +N S      I        S +  + L  N L  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 186 YVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFAN 245
             + F     L  LK L L    ++   +       L S+  L      +  ++P +F  
Sbjct: 97  QHKMF---KGLESLKTLMLRSNRITCVGNDSF--IGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 246 FSSLVTLDISDNQF 259
             SL TL++  N F
Sbjct: 152 LHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSG 581
           L L+N+  +      + K L Q+  +N S N+I   I +     A+ +  + L+SN L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 582 PLPLIPS-------SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
               +         SL TL L SN ++  +       +++   +++L+L +N ++
Sbjct: 96  ----VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSS---VRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 38/182 (20%)

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
           T+D S+  L+     IP     L L++N  +   +  +  ++     L+ +N  NN ++ 
Sbjct: 15  TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ---LRKINFSNNKIT- 70

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSL-QNCTE 689
                           + E  F G         S +  + L  NR    +   + +    
Sbjct: 71  ---------------DIEEGAFEG--------ASGVNEILLTSNRLEN-VQHKMFKGLES 106

Query: 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF----HGFFPPELCGLASLKILDLS 745
           L+   +  N     +       LS + LLSL  NQ      G F      L SL  L+L 
Sbjct: 107 LKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT----LHSLSTLNLL 161

Query: 746 SN 747
           +N
Sbjct: 162 AN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 42/159 (26%)

Query: 450 LDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGP 509
           L ++ N      +   F  L +L   + S N               ++  I         
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNN---------------KITDI--------- 72

Query: 510 QFPQWLLSQ-NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDA 566
              +      + +  + L+++ +   +  ++ K L  +  L L  N+I   + +      
Sbjct: 73  --EEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGL 128

Query: 567 AQLETLDLSSNSLSGPLPLIP-------SSLTTLDLSSN 598
           + +  L L  N ++     +         SL+TL+L +N
Sbjct: 129 SSVRLLSLYDNQITT----VAPGAFDTLHSLSTLNLLAN 163

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 75.0 bits (184), Expect = 5e-14
 Identities = 66/487 (13%), Positives = 138/487 (28%), Gaps = 92/487 (18%)

Query: 194 SHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSS----L 249
           ++L  LK +    + +S      L       LETL+   C     +     +  +    +
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC--SGFTTDGLLSIVTHCRKI 166

Query: 250 VTLDISDNQF---ADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI----QNSTSLQHLD 302
            TL + ++ F       +        +L  L+     F    P  +    +N  SL  + 
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226

Query: 303 LSRNHFSS--SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
           +                   +    SL+ +        +L     +  L LS+      +
Sbjct: 227 VGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-M 285

Query: 361 PRAFKRLRHLRSVNLSGNKLSQEIS----------QVLDM--------FSACASNV--LE 400
           P  F     +R ++L    L  E            +VL+             A     L+
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345

Query: 401 SLDLSNNTLFGLLTNQIG------------NFKNLDSLDLSFNNIS----GHIPLSLGQL 444
            L +        + ++ G              + L+ + +  ++I+      I   L  L
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405

Query: 445 SSLRYLDVS-----TNNLNGTLSENHFANLTKLVGFDASGNS-----LVLKVVSPSWTPP 494
              R + +      T+        +      KL  F           L L  +       
Sbjct: 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP-- 463

Query: 495 FQLQAIGLSSCFIGPQFPQWLLSQNH-LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSY 553
             ++ + L       +           L  L++     S+      V  L  + YL +  
Sbjct: 464 -NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

Query: 554 NQI---------------------FGQIPDLNDAAQLETLD-----LSSNSLSGPLPLIP 587
            +                        ++P++N   ++  ++     L+  SL+G     P
Sbjct: 523 YRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCP 582

Query: 588 SSLTTLD 594
           +++  L 
Sbjct: 583 TTVRVLK 589

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 58/388 (14%), Positives = 115/388 (29%), Gaps = 77/388 (19%)

Query: 48  QDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERS 107
           +DLE  +    S  ++ VGD      V       ++ E    + + D G P +Y      
Sbjct: 210 KDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269

Query: 108 KIVGKINPSLLG----------LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISR-- 155
           + + ++  S +G             +  LDL Y   +       +    NL  L      
Sbjct: 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329

Query: 156 --AGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSL---------LKHLDL 204
              G   +          L+ L +          ++ G VS   L         L+++ +
Sbjct: 330 GDRGLEVLAQ----YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385

Query: 205 SGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSI 264
              D++  S   + T  L +L   R               +    +T     +   D+ +
Sbjct: 386 YVSDITNESLESIGTY-LKNLCDFRLVLL-----------DREERIT-----DLPLDNGV 428

Query: 265 VNQVLGLVNLVFLDLSTNNFQGAVPDAI-----QNSTSLQHLDLSRNHFSSSVPDWFNKF 319
            + ++G   L           G + D       Q S +++ + L     S          
Sbjct: 429 RSLLIGCKKLRRFAFYLRQ--GGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-------- 478

Query: 320 IDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL-ESKIPRAFKRLRHLRSVNLSGN 378
                           +        +++ L++      E  I  A  +L  LR + + G 
Sbjct: 479 ---------------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523

Query: 379 KLSQEISQVLDMFSACASNVLESLDLSN 406
           + S     ++ M  A     +E +    
Sbjct: 524 RASMTGQDLMQM--ARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 45/368 (12%), Positives = 107/368 (29%), Gaps = 56/368 (15%)

Query: 345 SIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDL 404
           + + + ++     +   R  +R  +LRS+ L G   +   + + + +    +  +  +  
Sbjct: 51  TREHVTMALCYTAT-PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI-- 107

Query: 405 SNNTLFGLLTNQIGNFKNLDSLDLSFNNIS--GHIPLSLGQLSSLRYLDVSTNNLNGTLS 462
                         N + L S+      +S      L+  +   L  L +   +   T  
Sbjct: 108 ------------SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDG 155

Query: 463 ENHFA-NLTKLVGFDASGNSLV------LKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
                 +  K+       +S        L  ++   T    L         I P+  + +
Sbjct: 156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215

Query: 516 LSQ-NHLIYLDLSN-SSISDTIPDRLVKSLSQINYLNLSYNQIFG-QIPDLNDAAQLETL 572
                 L+ + + +   +      +   +L +    +L+ +     +  +L    +L  L
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 573 DLSSNSLSGPLPLIP--SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
            LS    +    L P  + +  LDL    L    +   C  +     L+VL   N     
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALL---ETEDHCTLIQKCPNLEVLETRN----- 327

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690
                  +        L +                L+ L +        +       ++ 
Sbjct: 328 ----VIGDRGLE---VLAQY------------CKQLKRLRIERGADEQGMEDEEGLVSQR 368

Query: 691 RLFDISEN 698
            L  +++ 
Sbjct: 369 GLIALAQG 376

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 17/185 (9%)

Query: 200 KHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQF 259
              +L    ++         N L+S++ +  +   +  +         ++  L +  N+ 
Sbjct: 22  IKANLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL 75

Query: 260 ADSSIVNQVLG----LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW 315
                    +     L NL +L L+ N  Q          T+L+ L L  N   S     
Sbjct: 76  -------HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128

Query: 316 FNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNL 375
           F+K  +L YL+L++N+LQ    G    LT++  LDLS+N+L+S     F +L  L+ + L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188

Query: 376 SGNKL 380
             N+L
Sbjct: 189 YQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 9/140 (6%)

Query: 243 FANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNS-TSLQH 300
               ++L  L ++ NQ    S+ N V   L NL  L L  N  Q ++PD + +  T+L +
Sbjct: 81  LKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137

Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFNRLESK 359
           L+L+ N   S     F+K  +L  L LSYN+LQ S+P G    LT +K L L  N+L+S 
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS- 195

Query: 360 IPR-AFKRLRHLRSVNLSGN 378
           +P   F RL  L+ + L  N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 20/199 (10%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
             PD           +L +   + +V    N+   ++ +  + ++++ S+ G +  L ++
Sbjct: 12  IFPDDA--FAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNV 65

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
           + L L  N+L   I  A K L +L  + L+GN+L    + V D  +      L+ L L  
Sbjct: 66  RYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTN-----LKELVLVE 118

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLG---QLSSLRYLDVSTNNLNGTLSE 463
           N L  L         NL  L+L+ N +     L  G   +L++L  LD+S N L  +L E
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQS---LPKGVFDKLTNLTELDLSYNQLQ-SLPE 174

Query: 464 NHFANLTKLVGFDASGNSL 482
             F  LT+L       N L
Sbjct: 175 GVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 29/190 (15%)

Query: 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
           ET+ +S+           +     +L    ++           N    +  +   N+ + 
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKANLKKKSVT-DAVTQ-----NELNSIDQIIANNSDIK 54

Query: 630 GEIP-DCWMNWSFLFFLHLGENDFTGNLPTSLG---TLSSLQILHLRGNRFSGKIPVSL- 684
                    N   + +L LG N         +     L++L  L L GN+    +P  + 
Sbjct: 55  SVQGIQYLPN---VRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQ-SLPNGVF 105

Query: 685 QNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF----HGFFPPELCGLASLK 740
              T L+   + EN+   ++P  + ++L+ +  L+L  NQ      G F      L +L 
Sbjct: 106 DKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD----KLTNLT 160

Query: 741 ILDLSSNNLT 750
            LDLS N L 
Sbjct: 161 ELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 46/215 (21%), Positives = 70/215 (32%), Gaps = 46/215 (21%)

Query: 548 YLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPS--SLTTLDLSSNFLSGTLS 605
             NL            N+   ++ +  +++ +   +  I    ++  L L  N L   +S
Sbjct: 23  KANLKKKS-VTDAVTQNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLH-DIS 79

Query: 606 RFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSL-GTLS 664
                       L  L L  N L       +   + L  L L EN    +LP  +   L+
Sbjct: 80  AL-----KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLT 133

Query: 665 SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQ 724
           +L  L+L  N+       SL       +FD                +L+ +  L L  NQ
Sbjct: 134 NLTYLNLAHNQLQ-----SL----PKGVFD----------------KLTNLTELDLSYNQ 168

Query: 725 F----HGFFPPELCGLASLKILDLSSNNLTGVIPR 755
                 G F      L  LK L L  N L  V P 
Sbjct: 169 LQSLPEGVFDK----LTQLKDLRLYQNQLKSV-PD 198

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 252 LDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFS 309
           L + DNQ   + +   V   L+NL  L L +N    A+P  + +S T L  LDL  N  +
Sbjct: 45  LYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 310 SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRH 369
                 F++ + L+ L +  N+L   +P  +  LT +  L L  N+L+S    AF RL  
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 370 LRSVNLSGN 378
           L    L GN
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 68.6 bits (168), Expect = 5e-13
 Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 11/140 (7%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           +VP  I  +   Q L L  N  +   P  F+  I+L+ L L  N+L     G   +LT +
Sbjct: 33  SVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
             LDL  N+L       F RL HL+ + +  NKL  E+ + ++  +      L  L L  
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTH-----LTHLALDQ 144

Query: 407 NTLFGLLTNQIGNFKNLDSL 426
           N L  +     G F  L SL
Sbjct: 145 NQLKSIPH---GAFDRLSSL 161

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.1 bits (159), Expect = 8e-12
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           L L  N      P    +  +L+ L L  N   +     F+    L  L L  N+L    
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104

Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
                 L  +K L +  N+L   +PR  +RL HL  + L  N+L
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS 311
           LD+     A  S      GL  L +L+L  N  Q        + T L  L L+ N  +S 
Sbjct: 40  LDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 312 VPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHL 370
               F+    L+ L L  N+L+ S+P G    LT +K L L+ N+L+S    AF +L +L
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 371 RSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407
           ++++LS N+L        D         L+++ L  N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGK-----LQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 7/172 (4%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           +VP  I   T  + LDL     ++     F     L +L+L YN+LQ    G   +LT +
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
            +L L+ N+L S     F  L  L  + L GN+L    S V D  +      L+ L L+ 
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-----LKELRLNT 140

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
           N L  +         NL +L LS N +      +  +L  L+ + +  N  +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 42/148 (28%), Positives = 57/148 (38%), Gaps = 8/148 (5%)

Query: 168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLET 227
            L+ L +L+L  N L  L     G    L+ L  L L+   L+    G  + + L  L+ 
Sbjct: 57  GLTKLTWLNLDYNQLQTL---SAGVFDDLTELGTLGLANNQLASLPLG--VFDHLTQLDK 111

Query: 228 LRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQG 286
           L   G  L  +    F   + L  L ++ NQ    SI       L NL  L LSTN  Q 
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL--QSIPAGAFDKLTNLQTLSLSTNQLQS 169

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPD 314
               A      LQ + L  N F  S  +
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQFDCSRCE 197

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 15/149 (10%)

Query: 619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS- 677
           + L+L +  L+      +   + L +L+L  N            L+ L  L L  N+ + 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 678 --GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF----HGFFPP 731
               +   L    +L L     N+    +P+ + +RL+ +  L L  NQ      G F  
Sbjct: 98  LPLGVFDHLTQLDKLYL---GGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFD- 152

Query: 732 ELCGLASLKILDLSSNNLTGVIPRCINNL 760
               L +L+ L LS+N L  V     + L
Sbjct: 153 ---KLTNLQTLSLSTNQLQSVPHGAFDRL 178

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 15/183 (8%)

Query: 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
           + +D    SL      IP+    LDL S      L+           +L  LNL  N L 
Sbjct: 17  KEVDCQGKSLDSVPSGIPADTEKLDLQST----GLATLSDATFRGLTKLTWLNLDYNQLQ 72

Query: 630 GEIPDCWMNWSFLFFLHLGENDFTGNLPTSL-GTLSSLQILHLRGNRFSGKIPV----SL 684
                 + + + L  L L  N    +LP  +   L+ L  L+L GN+    +P      L
Sbjct: 73  TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRL 130

Query: 685 QNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDL 744
               ELRL   + N+   +IP    ++L+ +  LSL  NQ           L  L+ + L
Sbjct: 131 TKLKELRL---NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

Query: 745 SSN 747
             N
Sbjct: 187 FGN 189

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
            +P  I        L L  N F+  VP   + +  L  + LS N +      S  N+T +
Sbjct: 24  VLPKGIPRDV--TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381
            +L LS+NRL    PR F  L+ LR ++L GN +S
Sbjct: 81  LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           L L  N F   VP  + N   L  +DLS N  S+     F+    L  L LSYN L+  I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 337 P-GSLGNLTSIKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGN 378
           P  +   L S++ L L  N +   +P  AF  L  L  + +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS 311
           L +  NQF  + +  ++    +L  +DLS N        +  N T L  L LS N     
Sbjct: 36  LYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 312 VPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFN 354
            P  F+    L  LSL  N++   +P G+  +L+++  L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 15/96 (15%)

Query: 512 PQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQL 569
           P+ L +  HL  +DLSN+ IS T+ ++   +++Q+  L LSYN++   IP    +    L
Sbjct: 47  PKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSL 104

Query: 570 ETLDLSSNSLSGPLPLIP-------SSLTTLDLSSN 598
             L L  N +S     +P       S+L+ L + +N
Sbjct: 105 RLLSLHGNDISV----VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 216 PLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNL 274
           P   ++   L  +  S   +  +S  SF+N + L+TL +S N+     I  +   GL +L
Sbjct: 47  PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL--RCIPPRTFDGLKSL 104

Query: 275 VFLDLSTNNFQGAVPD-AIQNSTSLQHLDLSRN 306
             L L  N+    VP+ A  + ++L HL +  N
Sbjct: 105 RLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 34/243 (13%), Positives = 68/243 (27%), Gaps = 24/243 (9%)

Query: 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLD 176
             GL + +  +L       +        L  +   N   +    +    +   +NL+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69

Query: 177 LRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH 236
           L  N +      D   +  L+ L+ L ++   L   +           L  L      L 
Sbjct: 70  LSHNQI-----SDLSPLKDLTKLEELSVNRNRLKNLNGI-----PSACLSRLFLDNNELR 119

Query: 237 HISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNST 296
               L   +  +L  L I +N+      +  +  L  L  LDL  N         +    
Sbjct: 120 DTDSLI--HLKNLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEIT--NTGGLTRLK 172

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
            +  +DL+     +    +  +      +           P  + N  S     + +   
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELP 230

Query: 357 ESK 359
              
Sbjct: 231 VYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 21/219 (9%)

Query: 142 LGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKH 201
              L N +  N+ +     ++      LS +Q  +   + +     +    +   + LK 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI-----QSLAGMQFFTNLKE 67

Query: 202 LDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD 261
           L LS   +S  S  PL    L  LE L  +   L +++ +  A    L  L + +N+  D
Sbjct: 68  LHLSHNQISDLS--PL--KDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRD 120

Query: 262 SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFID 321
           +  +     L NL  L +  N  +  V   +   + L+ LDL  N  +++      +   
Sbjct: 121 TDSLI---HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKK 173

Query: 322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
           + ++ L+  +           L    ++     R  S  
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 16/186 (8%)

Query: 417 IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFD 476
                N    +L   +++  +     +LS ++  +   +N+    S       T L    
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELH 69

Query: 477 ASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIP 536
            S N   +  +SP      +L+ + ++   +        +    L  L L N+ + DT  
Sbjct: 70  LSHNQ--ISDLSPLKDLT-KLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTDS 123

Query: 537 DRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLDL 595
              +  L  +  L++  N++   I  L   ++LE LDL  N ++    L     +  +DL
Sbjct: 124 ---LIHLKNLEILSIRNNKL-KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179

Query: 596 SSNFLS 601
           +     
Sbjct: 180 TGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 24/217 (11%)

Query: 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLD 176
           +    +L  L LS+N    +     L  L  L  L+++R        +++ NL+ +    
Sbjct: 59  MQFFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNR--------NRLKNLNGIPSAC 107

Query: 177 LRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH 236
           L   +L    + D   + HL  L+ L +    L            L  LE L   G  + 
Sbjct: 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM----LGFLSKLEVLDLHGNEIT 163

Query: 237 HISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAV-PDAIQNS 295
           +   L+      +  +D++  +  +  +         L   +   +     + P  I N 
Sbjct: 164 NTGGLT--RLKKVNWIDLTGQKCVNEPVKY----QPELYITNTVKDPDGRWISPYYISNG 217

Query: 296 TSLQHLDLSRN--HFSSSVPDWFNKFIDLEYLSLSYN 330
            S     +      ++  V   F+++I++      ++
Sbjct: 218 GSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFD 254

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 47/217 (21%)

Query: 340 LGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVL 399
              L +    +L    +   +    K L  +++ N   + +       L       +  L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS-----LAGMQFFTN--L 65

Query: 400 ESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNG 459
           + L LS+N +  L  + + +   L+ L ++ N +     L+    + L  L +  N L  
Sbjct: 66  KELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD 120

Query: 460 TLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN 519
           T   +   +L  L       N   LK +                           L   +
Sbjct: 121 T---DSLIHLKNLEILSIRNNK--LKSIVM-------------------------LGFLS 150

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
            L  LDL  + I++T     +  L ++N+++L+  + 
Sbjct: 151 KLEVLDLHGNEITNTGG---LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 14/182 (7%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSL 579
            +   +  NS+I        ++  + +  L+LS+NQI   +  L D  +LE L ++ N L
Sbjct: 42  GVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNRL 97

Query: 580 SGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW 639
                +  + L+ L L +N L  T S      + +   L++L++ NN L   I       
Sbjct: 98  KNLNGIPSACLSRLFLDNNELRDTDS------LIHLKNLEILSIRNNKLK-SIVML-GFL 149

Query: 640 SFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENE 699
           S L  L L  N+ T      L  L  +  + L G +   +                 +  
Sbjct: 150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207

Query: 700 FV 701
           ++
Sbjct: 208 WI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 33/200 (16%), Positives = 79/200 (39%), Gaps = 44/200 (22%)

Query: 431 NNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPS 490
             I+   P     L++    ++   ++   +S+   + +      +   ++  ++ ++  
Sbjct: 7   TPINQVFPDP--GLANAVKQNLGKQSVTDLVSQKELSGVQNF---NGDNSN--IQSLAG- 58

Query: 491 WTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLN 550
                                   +    +L  L LS++ ISD  P   +K L+++  L+
Sbjct: 59  ------------------------MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELS 91

Query: 551 LSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTLDLSSNFLSGTLSRFLC 609
           ++ N++   +  +  +A L  L L +N L     LI   +L  L + +N L  ++     
Sbjct: 92  VNRNRL-KNLNGIP-SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIV---- 144

Query: 610 NEMNNSMRLQVLNLGNNTLS 629
             +    +L+VL+L  N ++
Sbjct: 145 -MLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 44/232 (18%), Positives = 67/232 (28%), Gaps = 89/232 (38%)

Query: 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSL 579
           + +  +L   S++D +     K LS +   N   + I   +  +     L+ L LS N +
Sbjct: 20  NAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQI 75

Query: 580 SGPLPLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN 638
           S   PL   + L  L ++ N L              S  L  L L NN L          
Sbjct: 76  SDLSPLKDLTKLEELSVNRNRLKNL-------NGIPSACLSRLFLDNNELRD-------- 120

Query: 639 WSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698
                               SL  L +L+IL +R N+                   I   
Sbjct: 121 ------------------TDSLIHLKNLEILSIRNNKLK----------------SIVM- 145

Query: 699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
                                             L  L+ L++LDL  N +T
Sbjct: 146 ----------------------------------LGFLSKLEVLDLHGNEIT 163

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFSS 310
           LD+  N             L +L  L L  N  Q ++P+ + N  TSL +L+LS N   S
Sbjct: 33  LDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 311 SVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFNRLESKIPR-AFKRLR 368
                F+K   L+ L+L+ N+LQ S+P G    LT +K L L  N+L+S +P   F RL 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLT 148

Query: 369 HLRSVNLSGN 378
            L+ + L  N
Sbjct: 149 SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 44/140 (31%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           +VP  I   T   +LDL  N   S     F++   L  L L  N+LQ    G    LTS+
Sbjct: 21  SVPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
             L+LS N+L+S     F +L  L+ + L+ N+L      V D  +      L+ L L  
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ-----LKDLRLYQ 133

Query: 407 NTLFGLLTNQIGNFKNLDSL 426
           N L  +     G F  L SL
Sbjct: 134 NQLKSVPD---GVFDRLTSL 150

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 38/104 (36%), Positives = 50/104 (48%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           LDL TN+ +          TSL  L L  N   S     FNK   L YL+LS N+LQ   
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
            G    LT +K L L+ N+L+S     F +L  L+ + L  N+L
Sbjct: 93  NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 277 LDLSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
           L L+ N       D +      L  L+L RN  +   P+ F     ++ L L  N+++  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 336 IP-GSLGNLTSIKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGN 378
           I       L  +K+L+L  N++   +   +F+ L  L S+NL+ N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPD-WFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
            +P  I   T    L L+ N       D  F +   L  L L  N+L G  P +    + 
Sbjct: 22  EIPRDIPLHT--TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381
           I+ L L  N+++    + F  L  L+++NL  N++S
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS 311
           L ++DN+    S       L +LV L+L  N   G  P+A + ++ +Q L L  N     
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93

Query: 312 VPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFN 354
               F     L+ L+L  N++   +  GS  +L S+ SL+L+ N
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 16/215 (7%)

Query: 193 VSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTL 252
            +    L   +LS    +           L  LE      CLL  I  +      +L  L
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMR-----ALDPL 398

Query: 253 DISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSV 312
                     S +  V  +    +LD   + F             ++ L L+    +   
Sbjct: 399 LYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-- 455

Query: 313 PDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRS 372
                + + + +L LS+N L+ ++P +L  L  ++ L  S N LE+ +      L  L+ 
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQE 512

Query: 373 VNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407
           + L  N+L Q     +    +C    L  L+L  N
Sbjct: 513 LLLCNNRLQQS--AAIQPLVSCPR--LVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 18/283 (6%)

Query: 350 DLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL 409
           D +   +E + P    R  H+   +L    L+ ++ Q         S+  +   L  +  
Sbjct: 279 DEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRP 338

Query: 410 FGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANL 469
                +     + L   +LS    +  +   L     L+ L+        T+       L
Sbjct: 339 ECWCRD-SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI-ILLMRAL 395

Query: 470 TKLVGFDASGNSLV-LKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSN 528
             L+    +      LK V P          +         +     +    +  L L++
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMR-----AAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 529 SSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPS 588
             ++  +    ++ L  + +L+LS+N++    P L     LE L  S N+L   +  + +
Sbjct: 451 KDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVAN 506

Query: 589 --SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
              L  L L +N L    +      + +  RL +LNL  N+L 
Sbjct: 507 LPRLQELLLCNNRLQ-QSAAIQ--PLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 52/265 (19%), Positives = 83/265 (31%), Gaps = 15/265 (5%)

Query: 488 SPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQIN 547
            PS      L A  L+       F       +      L          D    +  Q+ 
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD--SATDEQLF 352

Query: 548 YLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRF 607
              LS  +      +L    +L+ L+  +      + L+  +L  L      L    S  
Sbjct: 353 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTL 411

Query: 608 LCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQ 667
              +  + MR   L+   +    E     M ++ +  LHL   D T  L   L  L  + 
Sbjct: 412 ---KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVT 466

Query: 668 ILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIG-ERLSGIILLSLRANQFH 726
            L L  NR    +P +L     L +   S+N     +    G   L  +  L L  N+  
Sbjct: 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNA----LENVDGVANLPRLQELLLCNNRLQ 521

Query: 727 GF-FPPELCGLASLKILDLSSNNLT 750
                  L     L +L+L  N+L 
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 142 LGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPN---YLGGLYVEDFGWVSHLSL 198
           L     L  ++  RA ++  +  +    +++  ++       +L    +     +  L L
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258
           + HLDLS   L           +L  LE L+ S   L ++  ++  N   L  L + +N+
Sbjct: 465 VTHLDLSHNRLRALPPA---LAALRCLEVLQASDNALENVDGVA--NLPRLQELLLCNNR 519

Query: 259 FADSSIVNQVLGLVNLVFLDLSTNNFQ 285
              S+ +  ++    LV L+L  N+  
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 5e-07
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
             L  L  + HLDLS+N  +   +P  L +L  L  L  S      +    + NL  LQ 
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQE 512

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           L L  N L          +     L  L+L G
Sbjct: 513 LLLCNNRLQQS--AAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 44/322 (13%), Positives = 82/322 (25%), Gaps = 73/322 (22%)

Query: 510 QFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQL 569
              +        +     N  +       +           L  ++      D     QL
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 570 ETLDLSSNSLSGPLPLIPS--SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
              +LS    +     + S   L  L+  + +   T+   +         L  L     T
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM-------RALDPLLYEKET 404

Query: 628 LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC 687
           L        ++     +L    + F           + +++LHL     +  +   L+  
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQL 462

Query: 688 TELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
             +   D+S N            RL  +              PP L  L  L++L  S N
Sbjct: 463 LLVTHLDLSHN------------RLRAL--------------PPALAALRCLEVLQASDN 496

Query: 748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS 807
            L       ++ +A + +                              L+ L L  N   
Sbjct: 497 ALE-----NVDGVANLPR------------------------------LQELLLCNNRLQ 521

Query: 808 G-EIPSQVTNLVGLQTLKLSHN 828
                  + +   L  L L  N
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 95  DGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNIS 154
           D   A Y    RSK + + +   +    +  L L++ D   + +   L  L  + +L++S
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD---LTVLCHLEQLLLVTHLDLS 471

Query: 155 RAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSD 214
                  +P  +  L  L+ L    N L     E+   V++L  L+ L L          
Sbjct: 472 HNRLRA-LPPALAALRCLEVLQASDNAL-----ENVDGVANLPRLQELLLCN-------- 517

Query: 215 GPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD 261
                N L     +                +   LV L++  N    
Sbjct: 518 -----NRLQQSAAI------------QPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 50/322 (15%), Positives = 107/322 (33%), Gaps = 26/322 (8%)

Query: 558 GQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMR 617
            +  D+     +   +   +        + S + TL L  +    ++     +  N    
Sbjct: 239 AEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSH 298

Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE----NDFTGNLPTSLGTLSSLQILHLRG 673
           + + +L   +L+ ++P       +       E     D          T   L    L  
Sbjct: 299 VWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSV 358

Query: 674 NRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPEL 733
            + S  +   L++C EL+  +                     I+L +RA     +    L
Sbjct: 359 EK-STVLQSELESCKELQELEPENK------------WCLLTIILLMRALDPLLYEKETL 405

Query: 734 CGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVK-YPIGY 792
              ++LK +D     +       + +   +   VL+++      L +  K +     +  
Sbjct: 406 QYFSTLKAVD----PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ 461

Query: 793 PYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSN 852
              +  LDLS N     +P  +  L  L+ L+ S N     +   +  +  ++ L   +N
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 518

Query: 853 RLQG-EIPKNMVNLEFLEIFNI 873
           RLQ     + +V+   L + N+
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNL 540

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           L+L +N  Q          T L  L LS+N   S     F+K   L  L L  N+LQ S+
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 337 P-GSLGNLTSIKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGN 378
           P G    LT +K L L  N+L+S +P   F RL  L+ + L  N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
           +VP  I   +S   L+L  N   S     F+K   L  LSLS N++Q    G    LT +
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
             L L  N+L+S     F +L  L+ + L  N+L
Sbjct: 79  TILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 18/250 (7%)

Query: 68  CCKWYGVVCDNITGHVLELRLRNPSRDDG----SPAEYEAYERSKIVGKINPSLLGLKHL 123
           C +WY +  D      L+L  +N   D      S            + +          +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 124 IHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLG 183
            H+DLS +  +   +   L     L  L++        I + +   SNL  L+L     G
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS----G 151

Query: 184 GLYVEDFGW---VSHLSLLKHLDLSG-VDLSKTSDGPLITNSLHSLETLRFSGCLLHHIS 239
                +F     +S  S L  L+LS   D ++      + +   ++  L  SG    ++ 
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY-RKNLQ 210

Query: 240 PLSFA----NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS-TNNFQGAVPDAIQN 294
               +       +LV LD+SD+    +    +   L  L  L LS   +        +  
Sbjct: 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270

Query: 295 STSLQHLDLS 304
             +L+ L + 
Sbjct: 271 IPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 50/271 (18%), Positives = 99/271 (36%), Gaps = 41/271 (15%)

Query: 192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVT 251
             S  SL + LDL+G +L     G L++  + +    R               +   +  
Sbjct: 42  LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRS----FMDQPLAEHFSPFRVQH 97

Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHF--S 309
           +D+S++    S++   +     L  L L        + + +  +++L  L+LS       
Sbjct: 98  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 157

Query: 310 SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRH 369
            ++    +    L+ L+LS+                    D +   ++  +    + +  
Sbjct: 158 FALQTLLSSCSRLDELNLSWCF------------------DFTEKHVQVAVAHVSETITQ 199

Query: 370 LRSVNLSGNKLSQEISQ--VLDMFSACASNVLESLDLSNNTLFGLLTNQ----IGNFKNL 423
           L   NLSG    + + +  +  +   C +  L  LDLS++    +L N           L
Sbjct: 200 L---NLSG--YRKNLQKSDLSTLVRRCPN--LVHLDLSDSV---MLKNDCFQEFFQLNYL 249

Query: 424 DSLDLSF-NNISGHIPLSLGQLSSLRYLDVS 453
             L LS   +I     L LG++ +L+ L V 
Sbjct: 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 45/270 (16%), Positives = 101/270 (37%), Gaps = 22/270 (8%)

Query: 348 SLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV-LESLDLSN 406
           + D S  +      +        R ++          S +    +   S   ++ +DLSN
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 407 NTLF-GLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS-TNNLNGTLSEN 464
           + +    L   +     L +L L    +S  I  +L + S+L  L++S  +  +    + 
Sbjct: 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162

Query: 465 HFANLTKLVGFDASGNSLV----LKVVSPSWTPPFQLQAIGLSSC--FIGPQFPQWLLSQ 518
             ++ ++L   + S         ++V     +    +  + LS     +       L+ +
Sbjct: 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLSGYRKNLQKSDLSTLVRR 220

Query: 519 -NHLIYLDLSN-SSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD-----LNDAAQLET 571
             +L++LDLS+   + +       + L+ + +L+LS       I       L +   L+T
Sbjct: 221 CPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCY---DIIPETLLELGEIPTLKT 276

Query: 572 LDLSSNSLSGPLPLIPSSLTTLDLSSNFLS 601
           L +      G L L+  +L  L ++ +  +
Sbjct: 277 LQVFGIVPDGTLQLLKEALPHLQINCSHFT 306

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 46/260 (17%), Positives = 92/260 (35%), Gaps = 25/260 (9%)

Query: 438 PLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQL 497
           P   G+L S   +                 +  ++   D S + + +  +    +   +L
Sbjct: 61  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120

Query: 498 QAIGLSSCFIGPQFPQWLLSQNHLIYLDLSN-SSISDTIPDRLVKSLSQINYLNLSYNQI 556
           Q + L    +       L   ++L+ L+LS  S  S+     L+ S S+++ LNLS+   
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW--- 177

Query: 557 FGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLS--SNFLSGTLSRFLCNEMNN 614
                           D +   +   +  +  ++T L+LS     L  +    L     N
Sbjct: 178 --------------CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223

Query: 615 SMRLQVLNL-GNNTLSGEIPDCWMNWSFLFFLHLGE-NDFTGNLPTSLGTLSSLQILHLR 672
              L  L+L  +  L  +    +   ++L  L L    D        LG + +L+ L + 
Sbjct: 224 ---LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

Query: 673 GNRFSGKIPVSLQNCTELRL 692
           G    G + +  +    L++
Sbjct: 281 GIVPDGTLQLLKEALPHLQI 300

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.6 bits (154), Expect = 9e-11
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 311 SVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRH 369
                     +L  L +   +    +    L  L  +++L +  + L    P AF     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 370 LRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL 409
           L  +NLS N L     + +   S      L+ L LS N L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS------LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 270 GLVNLVFLDLSTNNFQGAVPD-AIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS 328
           G  NL  L +        +    ++    L++L + ++      PD F+    L  L+LS
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 329 YNELQGSIPGSLGNLTSIKSLDLSFNRL 356
           +N L+ S+        S++ L LS N L
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 512 PQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQL 569
              L    +L  L + N      +  R ++ L ++  L +  + +   +     +   +L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRL 82

Query: 570 ETLDLSSNSLSG--PLPLIPSSLTTLDLSSNFL 600
             L+LS N+L       +   SL  L LS N L
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 4e-06
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 399 LESLDLSNNTLFGLLTNQ-IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
           L  L + N      L  + +     L +L +  + +    P +      L  L++S N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 458 NGTLSENHFANLTKLVGFDASGNSLVL 484
             +LS      L+ L     SGN L  
Sbjct: 93  E-SLSWKTVQGLS-LQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 22/115 (19%)

Query: 534 TIPDRLVKSLSQINYLNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLIP---- 587
                L      +  L +   Q    +    L    +L  L +  + L      +     
Sbjct: 22  DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR----FVAPDAF 76

Query: 588 ---SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW 639
                L+ L+LS N L  +LS     +    + LQ L L  N L      C + W
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSW----KTVQGLSLQELVLSGNPLHC---SCALRW 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 195 HLSLLKHLDLSG-VDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLD 253
               L  L +     L       L    L  L  L      L  ++P +F     L  L+
Sbjct: 29  GAENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 254 ISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
           +S N     S+  + +  ++L  L LS N   
Sbjct: 87  LSFNAL--ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 113 INPSLLGLKHLIHLDLSYNDFQGIQI--PRFLGSLENLMYLNISRAGFVGIIPHQIGNLS 170
               L G ++L  L +     Q +Q    R L  L  L  L I ++G   + P       
Sbjct: 23  SLHHLPGAENLTELYIENQ--QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 171 NLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
            L  L+L  N L  L  +    +S    L+ L LSG
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS----LQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 136 IQIPRFLGSLENLMYLNISRAGFVGIIP-HQIGNLSNLQFLDLRPNYLGGLYVEDFGWVS 194
           +     L   ENL  L I     +  +    +  L  L+ L +  + L  +  + F    
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF---H 77

Query: 195 HLSLLKHLDLSGVDLSKTSDGPLITNSLHSL 225
               L  L+LS   L   S   +   SL  L
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 26/107 (24%)

Query: 655 NLPTSLGTLSSLQILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLS 713
           +    L    +L  L++   +    +    L+   ELR   I ++               
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-------------- 67

Query: 714 GIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNL 760
              L  +  + FH            L  L+LS N L  +  + +  L
Sbjct: 68  ---LRFVAPDAFHF--------TPRLSRLNLSFNALESLSWKTVQGL 103

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTS 345
           +VP  I   T+ Q L L  N  +   P  F++   L  L L  N+L   +P G    LT 
Sbjct: 23  SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79

Query: 346 IKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGN 378
           +  L L+ N+L+S IPR AF  L+ L  + L  N
Sbjct: 80  LTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
             + L L  N++    PG    LT +  LDL  N+L       F +L  L  ++L+ N+L
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNLTS 345
           +VP  I   T  Q L L+ N  +   P  F+  ++L+ L  + N+L  +IP G    LT 
Sbjct: 26  SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQ 82

Query: 346 IKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGN 378
           +  LDL+ N L+S IPR AF  L+ L  + L  N
Sbjct: 83  LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
           D + L L+ N++    PG   +L +++ L  + N+L +     F +L  L  ++L+ N L
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 50/316 (15%), Positives = 94/316 (29%), Gaps = 64/316 (20%)

Query: 169 LSNLQFLDLRPNYLGGLYVED--FGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLE 226
           LS+L+ L+L    +  +          S    L  ++L+   L   +    +        
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-PAGLRTLLPVFLRAR 129

Query: 227 TLRFSGCLL-----HHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLV-----NLVF 276
            L      L       +  L   +   + TL +S+N    + +   VL        ++  
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV--AVLMEGLAGNTSVTH 187

Query: 277 LDLSTNNF--QGAVP--DAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           L L       +G       +  +  LQ L+++ N              D   L+L+    
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG-----------DTAALALA---- 232

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLE-------SKIPRAFKRLRHLRSVNLSGNKLSQEIS 385
                 +     S++ L L FN L          +  A +    +      G  +S+  S
Sbjct: 233 -----RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWS 287

Query: 386 QVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQL- 444
            +L       S V  +L+            ++     L   DL  +  +   P    QL 
Sbjct: 288 VIL-------SEVQRNLNS-------WDRARVQRHLELLLRDLEDSRGATLNPWRKAQLL 333

Query: 445 ---SSLRYLDVSTNNL 457
                +R L     + 
Sbjct: 334 RVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 48/252 (19%), Positives = 78/252 (30%), Gaps = 36/252 (14%)

Query: 405 SNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSEN 464
            N  +   L   I N   L++       +       L     L +L       N   S  
Sbjct: 10  HNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAE 69

Query: 465 HFANLTKLVGFDASGNSL----------VLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW 514
             ++L +L   + +G  +          VL            L  + L+SC + P   + 
Sbjct: 70  VLSSLRQL---NLAGVRMTPVKCTVVAAVLGS------GRHALDEVNLASCQLDPAGLRT 120

Query: 515 LLSQN-HLIYLDLSNSSISDT----IPDRLVKSLSQINYLNLSYNQIFGQ-IPDLNDA-- 566
           LL        L L  +S+       + D L+    QI  L LS N +    +  L +   
Sbjct: 121 LLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180

Query: 567 --AQLETLDLSSNSLS-------GPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMR 617
               +  L L    L                 L  L+++ N    T +  L         
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240

Query: 618 LQVLNLGNNTLS 629
           L++L+L  N LS
Sbjct: 241 LELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 47/328 (14%), Positives = 97/328 (29%), Gaps = 56/328 (17%)

Query: 341 GNLTSIKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGNKLSQEISQVL-DMFSACASNV 398
             L   + LD  F   E +  R + + L  LR +NL+G +++     V+  +  +   + 
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSG-RHA 102

Query: 399 LESLDLSNNTLFGLLTNQIGN---------FKNLDSLDLSFNNIS--GHIPLS---LGQL 444
           L+ ++L++         Q+           F     L L  N++       L    L   
Sbjct: 103 LDEVNLAS--------CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154

Query: 445 SSLRYLDVSTNNLNGT--------LSENHFANLTKLVGFDASGNSLV---LKVVSPSWTP 493
             +  L +S N L           L+ N   ++T L         L    L++++     
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNT--SVTHL---SLLHTGLGDEGLELLAAQLDR 209

Query: 494 PFQLQAIGLSSCFIGPQ----FPQWLLSQNHLIYLDLSNSSISDT------IPDRLVKSL 543
             QLQ + ++    G        +       L  L L  + +S              +  
Sbjct: 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269

Query: 544 SQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGT 603
           +++         +         +  L  +  + NS           L   DL  +  +  
Sbjct: 270 ARVVVSLTEGTAV-----SEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATL 324

Query: 604 LSRFLCNEMNNSMRLQVLNLGNNTLSGE 631
                   +     ++ L     +    
Sbjct: 325 NPWRKAQLLRVEGEVRALLEQLGSSGSP 352

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 316 FNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNL 375
           +   +    L L   ++   I      L    ++D S N +  K+   F  LR L+++ +
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-RKL-DGFPLLRRLKTLLV 71

Query: 376 SGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT-NQIGNFKNLDSLDLSFN--- 431
           + N+    I ++ +       + L  L L+NN+L  L   + + + K+L  L +  N   
Sbjct: 72  NNNR----ICRIGEGLDQALPD-LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Query: 432 NISGHIPLSLGQLSSLRYLD 451
           N   +    + ++  +R LD
Sbjct: 127 NKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 339 SLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV 398
              N    + LDL   ++   I      L    +++ S N++ +     LD F       
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-----LDGFPLL--RR 65

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS--GHIPLSLGQLSSLRYLDVSTN 455
           L++L ++NN +  +         +L  L L+ N++   G +   L  L SL YL +  N
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 293 QNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS 352
            N+   + LDL        + +        + +  S NE++  + G    L  +K+L ++
Sbjct: 16  TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVN 72

Query: 353 FNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407
            NR+        + L  L  + L+ N L +     LD  ++  S  L  L +  N
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVEL--GDLDPLASLKS--LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 349 LDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNT 408
           + L+   +E +  + +      R ++L G K    I  + ++ +       +++D S+N 
Sbjct: 2   VKLTAELIE-QAAQ-YTNAVRDRELDLRGYK----IPVIENLGATLDQ--FDAIDFSDNE 53

Query: 409 LFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFAN 468
           +  L  +     + L +L ++ N I          L  L  L ++ N+L      +  A+
Sbjct: 54  IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 111

Query: 469 LTKLVGFDASGN 480
           L  L       N
Sbjct: 112 LKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 165 QIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHS 224
           Q  N    + LDLR   +    +E+ G  + L     +D S  ++ K    P     L  
Sbjct: 14  QYTNAVRDRELDLRGYKIP--VIENLG--ATLDQFDAIDFSDNEIRKLDGFP----LLRR 65

Query: 225 LETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTN 282
           L+TL  +   +  I          L  L +++N   +   ++ +  L +L +L +  N
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 13/117 (11%)

Query: 515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDL 574
             +      LDL    I     + L  +L Q + ++ S N+I  ++       +L+TL +
Sbjct: 15  YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLKTLLV 71

Query: 575 SSN---SLSGPLPLIPSSLTTLDLSSNFLS--GTLSRFLCNEMNNSMRLQVLNLGNN 626
           ++N    +   L      LT L L++N L   G L      +      L  L +  N
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK-----SLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 5/115 (4%)

Query: 220 NSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDL 279
            +      L   G  +  I  L  A       +D SDN+      ++    L  L  L +
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNE---IRKLDGFPLLRRLKTLLV 71

Query: 280 STNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNELQ 333
           + N          Q    L  L L+ N        D       L YL +  N + 
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRP 179
           L     +D S N+ + +        L  L  L ++      I       L +L  L L  
Sbjct: 41  LDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 180 NYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           N L  L   D   ++ L  L +L +  
Sbjct: 98  NSLVEL--GDLDPLASLKSLTYLCILR 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 7e-09
 Identities = 98/683 (14%), Positives = 190/683 (27%), Gaps = 225/683 (32%)

Query: 299 QHLDLSRN----HFSSSVPDWFNKFI-DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSF 353
            H+D         +   +  + + F+ + +            +     ++ S + +D   
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDC---------KDVQDMPKSILSKEEIDHII 55

Query: 354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLL 413
                    A      L         L  +  +++  F       +E +   N   +  L
Sbjct: 56  M-----SKDAVSGTLRLFWT------LLSKQEEMVQKF-------VEEVLRIN---YKFL 94

Query: 414 TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS----TNNLNGTLSE-NHFAN 468
            + I   +   S+      I     L           +VS       L   L E     N
Sbjct: 95  MSPIKTEQRQPSMMTR-MYIEQRDRLY-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 469 LTKLVGFDASGNS-LVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLS 527
           +  + G   SG + + L V            +  +        F  WL         +L 
Sbjct: 153 VL-IDGVLGSGKTWVALDV----------CLSYKVQCKMDFKIF--WL---------NLK 190

Query: 528 NSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-------------------------- 561
           N +  +T+ + L K L QI+    S +     I                           
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 562 -DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLS-SNFLSGTLSRFLCNEMNN----- 614
            ++ +A      +LS   L          LTT     ++FLS   +  +  + ++     
Sbjct: 251 LNVQNAKAWNAFNLSCKIL----------LTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 615 --SMRL--QVLNLGNNTLSGEI------------------PDCWMNWSFLFFLHLGENDF 652
                L  + L+     L  E+                     W NW      H+  +  
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-----KHVNCDKL 355

Query: 653 TGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC-TELRLFDISENEFVGNIPT----- 706
           T  + +SL  L                 P   +     L +F    +    +IPT     
Sbjct: 356 TTIIESSLNVLE----------------PAEYRKMFDRLSVFP--PSA---HIPTILLSL 394

Query: 707 -WIG--ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC------- 756
            W    +    +++     N+ H +         SL  ++      T  IP         
Sbjct: 395 IWFDVIKSDVMVVV-----NKLHKY---------SL--VEKQPKESTISIPSIYLELKVK 438

Query: 757 INNLAGMAKEVLE----VDKFFEDALIVYKKKVVKYPIGY-PYYLKV------------- 798
           + N   + + +++       F  D LI     + +Y   +  ++LK              
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 799 -LDLS-------ANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFS 850
            LD          +  +      + N   LQ LK    +     P     + ++  LDF 
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLVNAI--LDFL 552

Query: 851 SNRLQGEIPKNMVNLEFLEIFNI 873
                  I +N++  ++ ++  I
Sbjct: 553 PK-----IEENLICSKYTDLLRI 570

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 34/163 (20%)

Query: 293 QNSTSLQHLDLSRNHFS-SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL 351
           +   +++ L L     +   +     +F++LE+LSL    L  S+   L  L  +K L+L
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLEL 78

Query: 352 SFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG 411
           S NR+   +    ++L +L  +NLSGNKL                  + +L+        
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKD----------------ISTLE-------- 114

Query: 412 LLTNQIGNFKNLDSLDLSFN---NISGHIPLSLGQLSSLRYLD 451
                +   + L SLDL      N++ +       L  L YLD
Sbjct: 115 ----PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 9/146 (6%)

Query: 164 HQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLH 223
            +    + ++ L L         +E     +    L+ L L  V L   S+ P     L 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLINVGLISVSNLP----KLP 71

Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTN- 282
            L+ L  S   +     +      +L  L++S N+  D S +  +  L  L  LDL    
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 283 --NFQGAVPDAIQNSTSLQHLDLSRN 306
             N         +    L +LD    
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
           +    +D+          R    +R L    L   K +    ++  + +   +  LE L 
Sbjct: 3   SGSSGMDMKRRIHLELRNRTPAAVREL---VLDNCKSN--DGKIEGLTAEFVN--LEFLS 55

Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSE 463
           L N  L  +  + +     L  L+LS N I G + +   +L +L +L++S N L    + 
Sbjct: 56  LINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113

Query: 464 NHFANLTKLVGFDASGN 480
                L  L   D    
Sbjct: 114 EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPL 583
           L L N   +D   + L      + +L+L    +   + +L    +L+ L+LS N + G L
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSNLPKLPKLKKLELSENRIFGGL 87

Query: 584 PLIPS---SLTTLDLSSNFLS--GTLSRFLCNEMNNSMRLQVLNLGNN 626
            ++     +LT L+LS N L    TL      E      L+ L+L N 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE-----CLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 205 SGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSF-ANFSSLVTLDISDNQFADSS 263
           SG+D+ +     L   +  ++  L    C  +        A F +L  L + +       
Sbjct: 6   SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-- 63

Query: 264 IVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDL 322
            V+ +  L  L  L+LS N   G +    +   +L HL+LS N     S  +   K   L
Sbjct: 64  -VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122

Query: 323 EYLSLSYNEL 332
           + L L   E+
Sbjct: 123 KSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 111 GKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLS 170
           GKI        +L  L L       +     L  L  L  L +S     G +      L 
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAEKLP 95

Query: 171 NLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           NL  L+L  N L  +       +  L  LK LDL  
Sbjct: 96  NLTHLNLSGNKLKDI--STLEPLKKLECLKSLDLFN 129

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 35/169 (20%)

Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384
           L      ++  +  +L  L + K L LS N +E KI  +   + +LR ++L  N +  +I
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQL 444
             +  +     ++ LE L +S N        QI +   ++ L                  
Sbjct: 86  ENLDAV-----ADTLEELWISYN--------QIASLSGIEKL------------------ 114

Query: 445 SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTP 493
            +LR L +S N +      +  A L KL     +GN L       + T 
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 46/189 (24%)

Query: 274 LVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
            V L       +  +   +    + +HL LS N+            I             
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEK---------IS------------ 64

Query: 334 GSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
                SL  + +++ L L  N +  KI         L  + +S N+++      L     
Sbjct: 65  -----SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIAS-----LSGIEK 113

Query: 394 CASNVLESLDLSNNTLFGLLT-NQIGNFKNLDSLDLSFNNISGHIPLS----------LG 442
             +  L  L +SNN +      +++     L+ L L+ N +      +          + 
Sbjct: 114 LVN--LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

Query: 443 QLSSLRYLD 451
           +L +L+ LD
Sbjct: 172 RLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 162 IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS 221
           +   +  L   + L L  N +     E    +S +  L+ L L    + K  +   +   
Sbjct: 40  MDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRNLIKKIEN---LDAV 91

Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
             +LE L  S   +  +S +      +L  L +S+N+  +   ++++  L  L  L L+ 
Sbjct: 92  ADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 282 N 282
           N
Sbjct: 150 N 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 34/161 (21%)

Query: 516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLS 575
            ++   + L      I     D  + +L    +L LS N I  +I  L+    L  L L 
Sbjct: 22  ATEAEKVELHGMIPPIEKM--DATLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLG 78

Query: 576 SNSLS--GPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP 633
            N +     L  +  +L  L +S N ++ +LS            L+VL + NN ++    
Sbjct: 79  RNLIKKIENLDAVADTLEELWISYNQIA-SLSGIEKLV-----NLRVLYMSNNKIT---- 128

Query: 634 DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN 674
               NW  +                 L  L  L+ L L GN
Sbjct: 129 ----NWGEI---------------DKLAALDKLEDLLLAGN 150

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 293 QNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL 351
           +  + ++ L L  +  +   +    ++F +LE+LS     L  SI   L  L  +K L+L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLEL 71

Query: 352 SFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407
           S NR+   +    ++  +L  +NLSGNK+  ++S  ++      +  L+SLDL N 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLST-IEPLKKLEN--LKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 12/136 (8%)

Query: 321 DLEYLSLSYNELQ-GSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK 379
           D++ L L  +    G + G       ++ L      L + I     +L  L+ + LS N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIAN-LPKLNKLKKLELSDNR 75

Query: 380 LSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT-NQIGNFKNLDSLDLSFN---NISG 435
               +S  L++ +    N L  L+LS N +  L T   +   +NL SLDL      N++ 
Sbjct: 76  ----VSGGLEVLAEKCPN-LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 436 HIPLSLGQLSSLRYLD 451
           +       L  L YLD
Sbjct: 131 YRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 27/144 (18%)

Query: 241 LSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH 300
           L     S +  L + +++  +  +         L FL                  TS+ +
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----------TSIAN 59

Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES-K 359
           L                K   L+ L LS N + G +        ++  L+LS N+++   
Sbjct: 60  LP---------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 360 IPRAFKRLRHLRSVNLSGNKLSQE 383
                K+L +L+S++L   +++  
Sbjct: 105 TIEPLKKLENLKSLDLFNCEVTNL 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLET 227
             S+++ L L  +      +E          L+ L    V L+  ++ P     L+ L+ 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLT--DEFEELEFLSTINVGLTSIANLP----KLNKLKK 68

Query: 228 LRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTN 282
           L  S   +     +      +L  L++S N+  D S +  +  L NL  LDL   
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 365 KRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLD 424
           +    ++ + L  ++      ++  +        LE L   N  L  +    +     L 
Sbjct: 14  RTPSDVKELVLDNSR--SNEGKLEGLTDEFEE--LEFLSTINVGLTSI--ANLPKLNKLK 67

Query: 425 SLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
            L+LS N +SG + +   +  +L +L++S N +    +      L  L   D    
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPL 583
           L L NS  ++   + L     ++ +L+     +   I +L    +L+ L+LS N +SG L
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLELSDNRVSGGL 80

Query: 584 PLIPS---SLTTLDLSSNFLS--GTLSRFLCNEMNNSMRLQVLNLGNN 626
            ++     +LT L+LS N +    T+      E      L+ L+L N 
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE-----NLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 5/118 (4%)

Query: 217 LITNSLHSLETLRFSGCLLHHISPLS-FANFSSLVTLDISDNQFADSSIVNQVLGLVNLV 275
           L   +   ++ L       +          F  L  L   +        +  +  L  L 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLK 67

Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNEL 332
            L+LS N   G +    +   +L HL+LS N     S  +   K  +L+ L L   E+
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 5/87 (5%)

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRP 179
            + L  L         I     L  L  L  L +S     G +        NL  L+L  
Sbjct: 41  FEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 180 NYLGGLYVEDFGWVSHLSLLKHLDLSG 206
           N +  L       +  L  LK LDL  
Sbjct: 98  NKIKDL--STIEPLKKLENLKSLDLFN 122

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.0 bits (131), Expect = 5e-08
 Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 29/197 (14%)

Query: 229 RFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAV 288
             S      +SP+       L  L I                  NL  L++ +     +V
Sbjct: 155 EISWIEQVDLSPV-LDAMPLLNNLKIKGTNNLSIG----KKPRPNLKSLEIISGGLPDSV 209

Query: 289 PDAIQNS--TSLQHLDLSRNH----FSSSVPDW-----FNKFIDLEYLSLSYNELQGSIP 337
            + I  S   +L+ L L        F   +  +      ++F +L++L +   E Q  + 
Sbjct: 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV 269

Query: 338 GSLGN---LTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQEISQVLDM 390
                   L  ++++D+S   L  +    +     +++HL+ +N+  N LS E      M
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE------M 323

Query: 391 FSACASNVLESLDLSNN 407
                 ++   +D+S++
Sbjct: 324 KKELQKSLPMKIDVSDS 340

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 25/200 (12%)

Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGA--VPDAIQNSTSLQH 300
           FA+F  L   DI   +   S I    L  V      L+    +G   +    +   +L+ 
Sbjct: 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKS 197

Query: 301 LDLSRNHFSSSVPDWF--NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES 358
           L++       SV +    +   +LE L L          G +     + S          
Sbjct: 198 LEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS---------- 247

Query: 359 KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL----FGLLT 414
                F  L+ L    +   +    + ++     +     LE++D+S   L      LL 
Sbjct: 248 --KDRFPNLKWL---GIVDAEEQNVVVEMF--LESDILPQLETMDISAGVLTDEGARLLL 300

Query: 415 NQIGNFKNLDSLDLSFNNIS 434
           + +   K+L  +++ +N +S
Sbjct: 301 DHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 21/145 (14%)

Query: 496 QLQAIGLSSCFIGPQFPQWLLSQN--HLIYLDL---SNSSISDTIPDRLVKSLS-----Q 545
            L+++ + S  +     + +L  +  +L  L L         D   +      S      
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253

Query: 546 INYLNLSYNQIFGQIPDLNDAA----QLETLDLSSNSLS--GPLPLIP-----SSLTTLD 594
           + +L +   +    + ++   +    QLET+D+S+  L+  G   L+        L  ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 595 LSSNFLSGTLSRFLCNEMNNSMRLQ 619
           +  N+LS  + + L   +   + + 
Sbjct: 314 MKYNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 515 LLSQNHLIYLDLSNSSISDTIPDRLVKS-LSQINYLNLSY---NQIFGQIPDLNDAA--- 567
              + +L  L++ +  + D++ + ++ S L  +  L L     +  F    ++       
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248

Query: 568 ----QLETLDLSSNSLSGPLP------LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMR 617
                L+ L +        +        I   L T+D+S+  L+   +R L + ++    
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 618 LQVLNLGNNTLSGE 631
           L+ +N+  N LS E
Sbjct: 309 LKFINMKYNYLSDE 322

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 25/109 (22%)

Query: 344 TSIKSLDLSFNRLESKIPRAF----KRLRHLRSVNLSGNKLSQEISQVLDMFSACASN-V 398
           T +K   +   R    +  A     K    L+S+N+  N +S      L    A  SN  
Sbjct: 65  TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL--VEALQSNTS 122

Query: 399 LESLDLSNNTLFGLLTNQIGNF------------KNLDSLDLSFNNISG 435
           L  L + N +        +GN               L      F     
Sbjct: 123 LIELRIDNQS------QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 20/145 (13%)

Query: 318 KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG 377
           ++   +     YN L    P    +   I+++D + + + S      + L+++  + L  
Sbjct: 39  RYHGQQRWQKDYNHL----PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCK 94

Query: 378 NKL-----SQEISQVLDMFSACASNVLESLDLSNNTL---FGLLTNQIGNFKNLDSLDLS 429
                    + +SQ+           +  +++ +       G++   + +F+NL  L LS
Sbjct: 95  CHYIEDGCLERLSQL-----ENLQKSMLEMEIISCGNVTDKGII--ALHHFRNLKYLFLS 147

Query: 430 F-NNISGHIPLSLGQLSSLRYLDVS 453
               +     +     +SL  L++ 
Sbjct: 148 DLPGVKEKEKIVQAFKTSLPSLELK 172

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 19/140 (13%)

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
           S Q LDL       S PD   + ID+  L+   + +  ++     N+  + SL+LS NRL
Sbjct: 128 SQQALDLKGLR---SDPDLVAQNIDVV-LNRR-SCMAATLRIIEENIPELLSLNLSNNRL 182

Query: 357 ES--KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT 414
                +    ++  +L+ +NLSGN+L  E  + LD         LE L L  N+L     
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLK---LEELWLDGNSLCDTFR 237

Query: 415 NQ-------IGNFKNLDSLD 427
           +Q          F  L  LD
Sbjct: 238 DQSTYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	873
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.76

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-85  Score=787.70  Aligned_cols=692  Identities=32%  Similarity=0.433  Sum_probs=521.6

Q ss_pred             ccccCCHHHHHHHHHhhhcCCCCCCCcCCCccCCCCCCccceeeEecCCCCcEEEEecCCCCCCCCCchhhhhcccccee
Q 045210           31 AAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIV  110 (873)
Q Consensus        31 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~  110 (873)
                      +++.+.++|++||++||+++.||. .+++|+ . +++||.|.||+|+  .|||++++|++.                .+.
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~-~-~~~~C~w~gv~C~--~~~v~~L~L~~~----------------~l~   63 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWS-S-NKNPCTFDGVTCR--DDKVTSIDLSSK----------------PLN   63 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTT-SSTTCC-T-TSCGGGSTTEEEE--TTEEEEEECTTS----------------CCC
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcc-cccCCC-C-CCCCcCCcceEEC--CCcEEEEECCCC----------------CcC
Confidence            344456899999999999999998 899998 4 6899999999998  699999999985                778


Q ss_pred             ee---cccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcc--cccCCCCCcEEECCCCCCCCC
Q 045210          111 GK---INPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPH--QIGNLSNLQFLDLRPNYLGGL  185 (873)
Q Consensus       111 g~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~l  185 (873)
                      |.   +++++.++++|+.++++.+.+..  +|..++.+++|++|+|++|.+++.+|.  .++++++|++|++++|.+...
T Consensus        64 g~~~~l~~~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  141 (768)
T 3rgz_A           64 VGFSAVSSSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP  141 (768)
T ss_dssp             EEHHHHHHHTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC
T ss_pred             CccCccChhHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc
Confidence            88   89999999999999999998753  678899999999999999999999998  999999999999999988644


Q ss_pred             ccCccccccCCCCCcEEeCCCCCCCCCCCcc-ccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCch
Q 045210          186 YVEDFGWVSHLSLLKHLDLSGVDLSKTSDGP-LITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSI  264 (873)
Q Consensus       186 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  264 (873)
                      .+..+  +.++++|++|++++|.+++..... ..+.++++|++|++++|.+.+..+.  .++++|++|++++|.+. +.+
T Consensus       142 ~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~-~~~  216 (768)
T 3rgz_A          142 GKVSG--GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFS-TGI  216 (768)
T ss_dssp             SSCCS--CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCC-SCC
T ss_pred             CCHHH--hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCC-CCC
Confidence            33321  468899999999999887664221 1267889999999999998877654  78899999999999887 555


Q ss_pred             hHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCC-
Q 045210          265 VNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNL-  343 (873)
Q Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-  343 (873)
                      +. ++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..+... 
T Consensus       217 ~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~  293 (768)
T 3rgz_A          217 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC  293 (768)
T ss_dssp             CB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTC
T ss_pred             cc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhc
Confidence            55 888899999999999998888888999999999999999888777765  78889999999999988888888765 


Q ss_pred             CCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHH-HHHhhhcccccccEEEccCcccCCccccccCCCC-
Q 045210          344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQV-LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK-  421 (873)
Q Consensus       344 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-  421 (873)
                      ++|++|++++|.+++.+|..++.+++|++|++++|.+++.++.. +...     +.|++|++++|.+++.+|..+..++ 
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~  368 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM-----RGLKVLDLSFNEFSGELPESLTNLSA  368 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC-----TTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred             CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC-----CCCCEEeCcCCccCccccHHHHhhhc
Confidence            88999999999988888888888888777777777766544332 2211     1255555555555555555555554 


Q ss_pred             CCCEEeCCCCccCccccccccC--CCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccE
Q 045210          422 NLDSLDLSFNNISGHIPLSLGQ--LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQA  499 (873)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  499 (873)
                      +|++|++++|++++.+|..+..  +++|++|++++|.+++.+|                                     
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-------------------------------------  411 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-------------------------------------  411 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-------------------------------------
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC-------------------------------------
Confidence            5555555555555555555444  4555555555555554443                                     


Q ss_pred             EeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCC
Q 045210          500 IGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNS  578 (873)
Q Consensus       500 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~  578 (873)
                                   .++..+++|++|++++|++.+.+|..+ ..+++|++|++++|.+.+.+| .+..+++|++|++++|+
T Consensus       412 -------------~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          412 -------------PTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             -------------GGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             -------------HHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence                         444445555555555555555444433 334556666666666655555 45555555555555554


Q ss_pred             CCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcc
Q 045210          579 LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT  658 (873)
Q Consensus       579 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  658 (873)
                      +.+.+                     |..    +.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|.
T Consensus       478 l~~~~---------------------p~~----l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          478 LTGEI---------------------PSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             CCSCC---------------------CGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             ccCcC---------------------CHH----HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence            44433                     333    22356666666666666666666666666666666666666666666


Q ss_pred             cccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCC----------------------eecccCChhHHhhcccCc
Q 045210          659 SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN----------------------EFVGNIPTWIGERLSGII  716 (873)
Q Consensus       659 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n----------------------~l~~~ip~~~~~~l~~L~  716 (873)
                      .++++++|+.|++++|+++|.+|..+..+..+..+++..+                      .+.|..|..+.. ++.++
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~  611 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRN  611 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG-GGGTC
T ss_pred             HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc-ccccc
Confidence            6666666666666666666666666655554444333321                      244556666664 88888


Q ss_pred             EEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccc
Q 045210          717 LLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYL  796 (873)
Q Consensus       717 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  796 (873)
                      .+++..|.+.|.+|..+..+++|+.||+++|+++|.+|.++++++.|                                 
T Consensus       612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L---------------------------------  658 (768)
T 3rgz_A          612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL---------------------------------  658 (768)
T ss_dssp             CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC---------------------------------
T ss_pred             ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC---------------------------------
Confidence            89999999999999999999999999999999999999999988876                                 


Q ss_pred             eEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccc--cccCCCC
Q 045210          797 KVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKN--MVNLEFL  868 (873)
Q Consensus       797 ~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--l~~l~~L  868 (873)
                      +.|||++|+++|.||.+++++++|++||||+|+++|.||..++.+++|++||+|+|+++|.||+.  +.+++..
T Consensus       659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~  732 (768)
T 3rgz_A          659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA  732 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGG
T ss_pred             CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999975  4444433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.7e-72  Score=673.43  Aligned_cols=627  Identities=32%  Similarity=0.432  Sum_probs=436.7

Q ss_pred             CCCCeecCCCCCCCCC--CCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCC
Q 045210          121 KHLIHLDLSYNDFQGI--QIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSL  198 (873)
Q Consensus       121 ~~L~~L~Ls~n~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~  198 (873)
                      .+++.|+|+++.+.+.  .+|+.++++++|++++++.+.+.. +|..++++++|++|+|++|.+....+.          
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~----------  118 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTT----------  118 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGG----------
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCC----------
Confidence            4677888888877652  156677777777777777776532 456677777777777777765421111          


Q ss_pred             CcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCcccc-CCCCCccEEEcCCCCCCCCchhHh---hcCCCCC
Q 045210          199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSF-ANFSSLVTLDISDNQFADSSIVNQ---VLGLVNL  274 (873)
Q Consensus       199 L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L  274 (873)
                                       ...++.+++|++|++++|.+.+..|..+ .++++|++|++++|.++ +..+..   +.++++|
T Consensus       119 -----------------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~l~~L  180 (768)
T 3rgz_A          119 -----------------LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-GANVVGWVLSDGCGEL  180 (768)
T ss_dssp             -----------------GGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE-EETHHHHHHTTCCTTC
T ss_pred             -----------------hHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC-CcCChhhhhhccCCCC
Confidence                             0123334444444444444444434333 45555555555555554 333333   4455555


Q ss_pred             cEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCC
Q 045210          275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN  354 (873)
Q Consensus       275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  354 (873)
                      ++|++++|.+++..+.  ..+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus       181 ~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  257 (768)
T 3rgz_A          181 KHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN  257 (768)
T ss_dssp             CEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred             CEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence            5555555555443332  4444555555555544444443 444444444444444444444444444444444444444


Q ss_pred             cCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCC-CCCCEEeCCCCcc
Q 045210          355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNF-KNLDSLDLSFNNI  433 (873)
Q Consensus       355 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l  433 (873)
                      .+++.+|..  .++                             +|++|++++|.+++.+|..+... ++|++|++++|++
T Consensus       258 ~l~~~~~~~--~l~-----------------------------~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l  306 (768)
T 3rgz_A          258 QFVGPIPPL--PLK-----------------------------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF  306 (768)
T ss_dssp             CCEESCCCC--CCT-----------------------------TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred             cccCccCcc--ccC-----------------------------CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence            444333321  222                             26667777777666666666554 7788888888887


Q ss_pred             CccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcch
Q 045210          434 SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQ  513 (873)
Q Consensus       434 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  513 (873)
                      ++.+|..++++++|++|++++|.++|.+|...+..+++|+.+++++|.+.+                         .+|.
T Consensus       307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~-------------------------~~p~  361 (768)
T 3rgz_A          307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG-------------------------ELPE  361 (768)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE-------------------------CCCT
T ss_pred             CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc-------------------------cccH
Confidence            777777777888888888888887777777667777777777777776543                         2455


Q ss_pred             hhhcCC-cccEEEccCCCCCcccChhHHhc-CCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCC---C
Q 045210          514 WLLSQN-HLIYLDLSNSSISDTIPDRLVKS-LSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLI---P  587 (873)
Q Consensus       514 ~l~~~~-~L~~L~l~~n~l~~~~p~~~~~~-l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~---~  587 (873)
                      ++..++ +|+.|++++|.+.+.+|..+... +++|++|++++|.+++.+| .+..+++|++|++++|.+.+.+|..   +
T Consensus       362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  441 (768)
T 3rgz_A          362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL  441 (768)
T ss_dssp             THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC
Confidence            555555 67777777777776666655432 5677888888888877766 6777777888888877777766653   4


Q ss_pred             CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCcc
Q 045210          588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQ  667 (873)
Q Consensus       588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  667 (873)
                      ++|++|++++|.+++.+|..+.    .+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|+
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELM----YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGG----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             CCCCEEECCCCcccCcCCHHHc----CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            6777888888888777776644    378889999999998888888888889999999999998888888888888999


Q ss_pred             EEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCC----------------------ee
Q 045210          668 ILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRAN----------------------QF  725 (873)
Q Consensus       668 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n----------------------~l  725 (873)
                      +|++++|++++.+|..++.+++|++|++++|+++|.+|.+++. ...+..+.+..+                      .+
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF  596 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred             EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc-ccchhhhhcccccccccccccccccccccccccccc
Confidence            9999999998888888888899999999999998888888875 444443333221                      13


Q ss_pred             eeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCc
Q 045210          726 HGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANY  805 (873)
Q Consensus       726 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~  805 (873)
                      .+..+..+..++.+..++++.|.+.|.+|..++.++.|                                 +.||+|+|+
T Consensus       597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L---------------------------------~~LdLs~N~  643 (768)
T 3rgz_A          597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM---------------------------------MFLDMSYNM  643 (768)
T ss_dssp             TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC---------------------------------CEEECCSSC
T ss_pred             ccccchhhhccccccccccccceecccCchhhhccccc---------------------------------cEEECcCCc
Confidence            34445556666667777778888888888777666655                                 899999999


Q ss_pred             ccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccccccCCCCCcccC
Q 045210          806 FSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI  873 (873)
Q Consensus       806 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l  873 (873)
                      ++|.||.+++++++|+.|+|++|.++|.||..++++++|+.||+|+|+++|.||+.+++|++|++|||
T Consensus       644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-57  Score=542.83  Aligned_cols=545  Identities=23%  Similarity=0.245  Sum_probs=249.7

Q ss_pred             CeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEe
Q 045210          124 IHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLD  203 (873)
Q Consensus       124 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~  203 (873)
                      +.+|.++++++.  +|..+.  +++++|++++|.+++..+..|+++++|++|++++|.++.+.+..   +.++++|++|+
T Consensus         7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~   79 (680)
T 1ziw_A            7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL---CQKLPMLKVLN   79 (680)
T ss_dssp             SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH---HHHCTTCCEEE
T ss_pred             CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH---HhcccCcCEEE
Confidence            345555655553  454443  56666666666666665556666666666666666655443321   22333333333


Q ss_pred             CCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCc
Q 045210          204 LSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN  283 (873)
Q Consensus       204 L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  283 (873)
                      +++|                          .++++++..|+++++|++|++++|.+. +..+..++++++|++|++++|.
T Consensus        80 L~~n--------------------------~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~  132 (680)
T 1ziw_A           80 LQHN--------------------------ELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNG  132 (680)
T ss_dssp             CCSS--------------------------CCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSC
T ss_pred             CCCC--------------------------ccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCc
Confidence            3333                          333333333444444444444444443 2222233344444444444444


Q ss_pred             CCCCChhhhcCCCCCCEEECCCCCCCCCCchhhh--cCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcch
Q 045210          284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN--KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP  361 (873)
Q Consensus       284 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  361 (873)
                      +++..+..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..++.+++|+.+++.++.+.....
T Consensus       133 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  212 (680)
T 1ziw_A          133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT  212 (680)
T ss_dssp             CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred             ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence            4444444444444455555544444443333332  23444444444444444444444444444444444444321111


Q ss_pred             hhhh---cCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcccc
Q 045210          362 RAFK---RLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP  438 (873)
Q Consensus       362 ~~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  438 (873)
                      ..+.   ..++|+.|++++|.+.+..+..+....   .+.|++|++++|.+.+..+..++.+++|++|++++|++++..|
T Consensus       213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (680)
T 1ziw_A          213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS  289 (680)
T ss_dssp             HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred             HHHHHHhhhccccEEEccCCcccccChhHhhccC---cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence            1110   113333333333333332222211110   0114444444444444444444555555555555555554444


Q ss_pred             ccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcC
Q 045210          439 LSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ  518 (873)
Q Consensus       439 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  518 (873)
                      ..+..+++|++|++++|...+.++..   .++.                                      .....+..+
T Consensus       290 ~~~~~l~~L~~L~L~~~~~~~~~~~~---~lp~--------------------------------------i~~~~~~~l  328 (680)
T 1ziw_A          290 HSLHGLFNVRYLNLKRSFTKQSISLA---SLPK--------------------------------------IDDFSFQWL  328 (680)
T ss_dssp             TTTTTCTTCCEEECTTCBCCC---------CCE--------------------------------------ECTTTTTTC
T ss_pred             hhhcCCCCccEEeccchhhhcccccc---cccc--------------------------------------cChhhcccC
Confidence            44555555555555444332221110   0000                                      001245566


Q ss_pred             CcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccc-cC--Cccc--cCCCCeEeCCCCCCCCCCCCC---CCCC
Q 045210          519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQ-IP--DLND--AAQLETLDLSSNSLSGPLPLI---PSSL  590 (873)
Q Consensus       519 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~-~~--~~~~--~~~L~~L~l~~n~l~~~~~~~---~~~L  590 (873)
                      ++|++|++++|.+.+. +...+..+++|++|++++|.+... ++  .+..  .+.|+.|++++|++.+..|..   +++|
T Consensus       329 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  407 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL  407 (680)
T ss_dssp             TTCCEEECCSCCBCCC-CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCEEECCCCccCCC-ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence            7777777777777653 334455677788888877765432 11  1221  135666666666655544432   3445


Q ss_pred             cEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCc--cCCcccccCCCCccE
Q 045210          591 TTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFT--GNLPTSLGTLSSLQI  668 (873)
Q Consensus       591 ~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~  668 (873)
                      +.|++++|.+++.+|..   .+.++++|++|++++|++.+..+..+..+++|+.|++++|.+.  +.+|..+..+++|+.
T Consensus       408 ~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQ---EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             CEEECCSSCCEEECCSG---GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CEEeCCCCcCccccCcc---cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            55555555554443321   1223455555555555555444555555555555555555544  344455555555555


Q ss_pred             EEccCCcccccCCcccccCCCCcEEEccCCeecccCC-------hhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCE
Q 045210          669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIP-------TWIGERLSGIILLSLRANQFHGFFPPELCGLASLKI  741 (873)
Q Consensus       669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip-------~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  741 (873)
                      |++++|++++..+..+..+++|++|++++|++++..+       ...+.++++|++|++++|+++...+..+..+++|+.
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            5555555554444445555555555555555542110       001112444444444444444222223444444444


Q ss_pred             EeCCCCccc
Q 045210          742 LDLSSNNLT  750 (873)
Q Consensus       742 L~Ls~N~l~  750 (873)
                      ||+++|+++
T Consensus       565 L~Ls~N~l~  573 (680)
T 1ziw_A          565 IDLGLNNLN  573 (680)
T ss_dssp             EECCSSCCC
T ss_pred             eECCCCCCC
Confidence            444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.3e-56  Score=529.04  Aligned_cols=576  Identities=25%  Similarity=0.279  Sum_probs=467.2

Q ss_pred             CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEE
Q 045210          198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL  277 (873)
Q Consensus       198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  277 (873)
                      ++++|++++|.++..+  +..+..+++|++|++++|.++++.|..|+++++|++|++++|.++ ...+..+.++++|++|
T Consensus        26 ~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLP--AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TCSEEECCSSCCCCCC--GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred             CCcEEECCCCCCCCcC--HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence            3444444444444332  224567788888888888888888999999999999999999986 3333468999999999


Q ss_pred             EccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCccccc--CCCCCCEEeCCCCc
Q 045210          278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG--NLTSIKSLDLSFNR  355 (873)
Q Consensus       278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~  355 (873)
                      ++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..++  .+++|++|++++|.
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            9999999987778899999999999999999988888899999999999999999987777664  56899999999999


Q ss_pred             CCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCC--CCEEeCCCCcc
Q 045210          356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKN--LDSLDLSFNNI  433 (873)
Q Consensus       356 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l  433 (873)
                      +++..|..+..+++|+.+++.++.+.............  ...|+.|++++|.+.+..|..+..++.  |++|++++|++
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~--~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA--NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHT--TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhh--hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            99988999999999999999999887554433221111  134999999999999888888887755  99999999999


Q ss_pred             CccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcch
Q 045210          434 SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQ  513 (873)
Q Consensus       434 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  513 (873)
                      ++..|..++.+++|++|++++|++.+..+. .+..+++|+.+++++|.....                         ++ 
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~-------------------------~~-  313 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQS-------------------------IS-  313 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC-----------------------------
T ss_pred             CccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhcc-------------------------cc-
Confidence            887788889999999999999988855443 567777777777665432111                         00 


Q ss_pred             hhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCC-CC-C----
Q 045210          514 WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPL-PL-I----  586 (873)
Q Consensus       514 ~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~-~~-~----  586 (873)
                       +...+              .++...+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.... +. .    
T Consensus       314 -~~~lp--------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~  378 (680)
T 1ziw_A          314 -LASLP--------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL  378 (680)
T ss_dssp             ----CC--------------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred             -ccccc--------------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc
Confidence             00000              2233345678899999999999999877 6889999999999999865322 11 1    


Q ss_pred             -CCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCC-hhhhccccCcEEEcCCCcCccCCcccccCCC
Q 045210          587 -PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP-DCWMNWSFLFFLHLGENDFTGNLPTSLGTLS  664 (873)
Q Consensus       587 -~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~  664 (873)
                       .++|+.|++++|++++..|..    +..+++|+.|++++|.+++.+| ..+.++++|++|++++|++.+..+..+..++
T Consensus       379 ~~~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  454 (680)
T 1ziw_A          379 AHSPLHILNLTKNKISKIESDA----FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP  454 (680)
T ss_dssp             TTSCCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT
T ss_pred             ccCcCceEECCCCCCCeEChhh----hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc
Confidence             258999999999999887765    4458999999999999988666 7899999999999999999988889999999


Q ss_pred             CccEEEccCCccc--ccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCC--------cccC
Q 045210          665 SLQILHLRGNRFS--GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFP--------PELC  734 (873)
Q Consensus       665 ~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p--------~~l~  734 (873)
                      +|+.|++++|.+.  +.+|..+..+++|++|++++|++++ +|...+.++++|++|++++|++++..+        ..+.
T Consensus       455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~  533 (680)
T 1ziw_A          455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK  533 (680)
T ss_dssp             TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT
T ss_pred             ccccchhccccccccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhc
Confidence            9999999999987  6789999999999999999999995 554444459999999999999986532        2378


Q ss_pred             CCCCCCEEeCCCCccccccCh-hhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChh
Q 045210          735 GLASLKILDLSSNNLTGVIPR-CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQ  813 (873)
Q Consensus       735 ~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~  813 (873)
                      .+++|+.|++++|+++ .+|. .|+.+++|                                 +.||+++|++++..|..
T Consensus       534 ~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L---------------------------------~~L~Ls~N~l~~l~~~~  579 (680)
T 1ziw_A          534 GLSHLHILNLESNGFD-EIPVEVFKDLFEL---------------------------------KIIDLGLNNLNTLPASV  579 (680)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCTTC---------------------------------CEEECCSSCCCCCCTTT
T ss_pred             CCCCCCEEECCCCCCC-CCCHHHcccccCc---------------------------------ceeECCCCCCCcCCHhH
Confidence            8999999999999999 5554 57776665                                 89999999999766666


Q ss_pred             hhcCCCCCeeeCCCCcCcccCCcccc-CCCCCCeEeccCCccccccc
Q 045210          814 VTNLVGLQTLKLSHNFFSGRIPVNMG-AMKSVEALDFSSNRLQGEIP  859 (873)
Q Consensus       814 l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~iP  859 (873)
                      +.++++|++|++++|.+++..|..++ .+++|+.+++++|++.+.-+
T Consensus       580 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             hCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            78999999999999999998888777 78999999999999998765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-52  Score=491.46  Aligned_cols=457  Identities=20%  Similarity=0.214  Sum_probs=257.4

Q ss_pred             CccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhc
Q 045210          239 SPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNK  318 (873)
Q Consensus       239 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~  318 (873)
                      .|..|+++++|++|++++|.++ ...+..+.++++|++|++++|.+++.....+..+++|++|++++|.+++..|..++.
T Consensus        97 ~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  175 (606)
T 3t6q_A           97 AETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS  175 (606)
T ss_dssp             CTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred             ChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence            3344444444444444444443 222333444445555555555544422222333555555555555555545555555


Q ss_pred             CCCcC--EEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcc-----hhhHHHHHh
Q 045210          319 FIDLE--YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ-----EISQVLDMF  391 (873)
Q Consensus       319 l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~  391 (873)
                      +++|+  +|++++|.+++..|..+. ..+|++|++++|.   .++..+..+.+++...+....+.+     .....+...
T Consensus       176 l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l  251 (606)
T 3t6q_A          176 LQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL  251 (606)
T ss_dssp             TTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred             hcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence            55555  555555655544444333 2456666666554   234444444444333332221111     111111111


Q ss_pred             hhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccc
Q 045210          392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTK  471 (873)
Q Consensus       392 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  471 (873)
                      ..   ..++.|++++|.+.+..+..++.+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..+         
T Consensus       252 ~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~---------  318 (606)
T 3t6q_A          252 CE---MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ---------  318 (606)
T ss_dssp             GG---SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG---------
T ss_pred             hc---CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch---------
Confidence            11   12677777777777666666677777777777777766 566666667777777777766653222         


Q ss_pred             cceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEec
Q 045210          472 LVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNL  551 (873)
Q Consensus       472 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l  551 (873)
                                                               ..+..+++|++|++++|.+.+.+|...+..+++|++|++
T Consensus       319 -----------------------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          319 -----------------------------------------ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             -----------------------------------------GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             -----------------------------------------hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence                                                     122333344444444444433333333333333333333


Q ss_pred             cCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCC
Q 045210          552 SYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE  631 (873)
Q Consensus       552 ~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~  631 (873)
                      ++|.+.+...                                          .+.    .+..+++|++|++++|++.+.
T Consensus       358 ~~n~l~~~~~------------------------------------------~~~----~~~~l~~L~~L~l~~n~l~~~  391 (606)
T 3t6q_A          358 SHDDIETSDC------------------------------------------CNL----QLRNLSHLQSLNLSYNEPLSL  391 (606)
T ss_dssp             CSSCCCEEEE------------------------------------------STT----TTTTCTTCCEEECCSCSCEEE
T ss_pred             CCCccccccC------------------------------------------cch----hcccCCCCCEEECCCCcCCcC
Confidence            3333221110                                          011    133467788888888888877


Q ss_pred             CChhhhccccCcEEEcCCCcCccCCccc-ccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc---CChh
Q 045210          632 IPDCWMNWSFLFFLHLGENDFTGNLPTS-LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN---IPTW  707 (873)
Q Consensus       632 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---ip~~  707 (873)
                      .|..+..+++|+.|++++|++.+..|.. +..+++|++|++++|++++..|..+..+++|++|++++|++++.   .+..
T Consensus       392 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  471 (606)
T 3t6q_A          392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS  471 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred             CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh
Confidence            7778888888888888888887665543 77788888888888888877777777888888888888877652   2233


Q ss_pred             HHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeeccccee
Q 045210          708 IGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVK  787 (873)
Q Consensus       708 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  787 (873)
                      +. .+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+.+++.                         
T Consensus       472 ~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-------------------------  525 (606)
T 3t6q_A          472 LQ-TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-------------------------  525 (606)
T ss_dssp             GG-GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS-------------------------
T ss_pred             hc-cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc-------------------------
Confidence            43 3667777777777776666666666666777777766666666655554333                         


Q ss_pred             ccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCC
Q 045210          788 YPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP  835 (873)
Q Consensus       788 ~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  835 (873)
                              | .||+++|++++.+|..++.+++|+.|++++|++.+..+
T Consensus       526 --------L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          526 --------I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             --------C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             --------c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence                    3 56666666666666666666666666666666665444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.3e-52  Score=485.52  Aligned_cols=536  Identities=21%  Similarity=0.200  Sum_probs=339.4

Q ss_pred             CcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEE
Q 045210          199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLD  278 (873)
Q Consensus       199 L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  278 (873)
                      -++++.+++.++.+|..     -.+++++|++++|.++++.+..|.++++|++|++++|.++ +..+..+.++++|++|+
T Consensus        13 ~~~~~c~~~~l~~ip~~-----~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDD-----IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TTEEECTTSCCSSCCTT-----SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCceEccCCCcccCCCC-----CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeE
Confidence            35677777777777542     1256777777777777766666666677777777666665 33344555666666666


Q ss_pred             ccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCc-cCcccccCCCCCCEEeCCCCcCC
Q 045210          279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLSFNRLE  357 (873)
Q Consensus       279 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~  357 (873)
                      +++|.+++..|..++++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|+++
T Consensus        87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            66666665555566666666666666666555444555555666666666665553 34555555555555555555555


Q ss_pred             CcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccC-cc
Q 045210          358 SKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS-GH  436 (873)
Q Consensus       358 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~  436 (873)
                      +..+..++.+++|+                         ..+++|++++|.+.+..+..+... +|++|++++|.+. +.
T Consensus       167 ~~~~~~~~~l~~L~-------------------------~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~  220 (606)
T 3vq2_A          167 TITVNDLQFLRENP-------------------------QVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNI  220 (606)
T ss_dssp             EECTTTTHHHHHCT-------------------------TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHH
T ss_pred             ecChhhhhhhhccc-------------------------cccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhH
Confidence            44444443333221                         013456666666555444433333 6777777777665 34


Q ss_pred             ccccccCCCCCCEEEccCccCCcc-----cChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCc
Q 045210          437 IPLSLGQLSSLRYLDVSTNNLNGT-----LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQF  511 (873)
Q Consensus       437 ~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  511 (873)
                      .|..+.+++.|+.+++..+.+.+.     +....+..+.                                         
T Consensus       221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~-----------------------------------------  259 (606)
T 3vq2_A          221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC-----------------------------------------  259 (606)
T ss_dssp             HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG-----------------------------------------
T ss_pred             HHHHhccccccccccccccccccCCcccccChHHhhhhh-----------------------------------------
Confidence            556666677776666654443211     1111111111                                         


Q ss_pred             chhhhcCCcccEEEc-cCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCC-CCCC
Q 045210          512 PQWLLSQNHLIYLDL-SNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL-IPSS  589 (873)
Q Consensus       512 ~~~l~~~~~L~~L~l-~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~  589 (873)
                           .+ .++.+++ ..+.+.+.+|.  +..+++|+.|++++|.+.. +|.+..+++|++|++++|.+ +.+|. ..++
T Consensus       260 -----~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~  329 (606)
T 3vq2_A          260 -----DV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFPTLDLPF  329 (606)
T ss_dssp             -----GS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCCCCCCSS
T ss_pred             -----hc-cHhheeccccccccccccc--cccCCCCCEEEecCccchh-hhhccccccCCEEEcccccC-cccccCCCCc
Confidence                 11 2333333 33333333333  3344455555555555432 22444555555555555555 33333 2455


Q ss_pred             CcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCC--CChhhhccccCcEEEcCCCcCccCCcccccCCCCcc
Q 045210          590 LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE--IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQ  667 (873)
Q Consensus       590 L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  667 (873)
                      |++|++++|...+.+      .+..+++|++|++++|.+++.  +|..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus       330 L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~  402 (606)
T 3vq2_A          330 LKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ  402 (606)
T ss_dssp             CCEEEEESCSSCEEC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred             cceeeccCCcCccch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence            666666666443322      134577788888888887765  47778888888888888888774 567778888888


Q ss_pred             EEEccCCcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeee-eCCcccCCCCCCCEEeCC
Q 045210          668 ILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHG-FFPPELCGLASLKILDLS  745 (873)
Q Consensus       668 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls  745 (873)
                      .|++++|++.+..| ..+..+++|++|++++|.+++..|..+.. +++|++|++++|++.+ .+|..+..+++|+.|+++
T Consensus       403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  481 (606)
T 3vq2_A          403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS  481 (606)
T ss_dssp             EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence            88888888887777 57788888888888888888777777664 8888888888888887 467778888888888888


Q ss_pred             CCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeC
Q 045210          746 SNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKL  825 (873)
Q Consensus       746 ~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~L  825 (873)
                      +|++++..|..++.+++|                                 +.|++++|++++.+|..++++++|++|++
T Consensus       482 ~n~l~~~~~~~~~~l~~L---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          482 KCQLEQISWGVFDTLHRL---------------------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             TSCCCEECTTTTTTCTTC---------------------------------CEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             CCcCCccChhhhcccccC---------------------------------CEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            888888777777766665                                 78888888888888888888888888888


Q ss_pred             CCCcCcccCCccccCCC-CCCeEeccCCccccccc
Q 045210          826 SHNFFSGRIPVNMGAMK-SVEALDFSSNRLQGEIP  859 (873)
Q Consensus       826 s~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~iP  859 (873)
                      ++|+++ .+|..+..++ +|+.|++++|++.+..|
T Consensus       529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            888888 6777777775 58888888888886554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.6e-51  Score=481.35  Aligned_cols=518  Identities=20%  Similarity=0.182  Sum_probs=378.5

Q ss_pred             CCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEEC
Q 045210          224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL  303 (873)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  303 (873)
                      .+++|++++|.++++.+..|+++++|++|++++|.+. ...+..+.++++|++|++++|.+++..|..+.++++|++|++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            5677777777777777777777777777777777765 444556666777777777777666666666666777777777


Q ss_pred             CCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCC--EEEccCCcCc
Q 045210          304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLR--SVNLSGNKLS  381 (873)
Q Consensus       304 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~  381 (873)
                      ++|.+++..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+  .|++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            77766655455566666666666666666653323333466666666666666655556666665554  4444444443


Q ss_pred             chhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCccc
Q 045210          382 QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTL  461 (873)
Q Consensus       382 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  461 (873)
                      +                             ..|..+. ...|++|++++|.   .++..+..+.+++...+.-..+.+. 
T Consensus       193 ~-----------------------------~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~-  238 (606)
T 3t6q_A          193 G-----------------------------IEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDM-  238 (606)
T ss_dssp             E-----------------------------ECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTS-
T ss_pred             c-----------------------------cChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccc-
Confidence            3                             2222222 2344555555443   1222233333332222221111100 


Q ss_pred             ChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcC--CcccEEEccCCCCCcccChhH
Q 045210          462 SENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ--NHLIYLDLSNSSISDTIPDRL  539 (873)
Q Consensus       462 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~n~l~~~~p~~~  539 (873)
                                 ..                                 ....+..+..+  .+|+.|++++|.+.+ ++...
T Consensus       239 -----------~~---------------------------------~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~  273 (606)
T 3t6q_A          239 -----------DD---------------------------------EDISPAVFEGLCEMSVESINLQKHYFFN-ISSNT  273 (606)
T ss_dssp             -----------CC---------------------------------CCCCGGGGGGGGGSEEEEEECTTCCCSS-CCTTT
T ss_pred             -----------cc---------------------------------cccChhHhchhhcCceeEEEeecCccCc-cCHHH
Confidence                       00                                 00001112221  268888888888864 55556


Q ss_pred             HhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCC---CCCCcEEEccCccCcCcchhhhhhhcccCC
Q 045210          540 VKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLI---PSSLTTLDLSSNFLSGTLSRFLCNEMNNSM  616 (873)
Q Consensus       540 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~  616 (873)
                      +..+++|++|++++|.++...+.+..+++|++|++++|.+.+..|..   +++|++|++++|.+.+.++..   .+..++
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~  350 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG---CLENLE  350 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS---TTTTCT
T ss_pred             hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh---hhhccC
Confidence            67789999999999999865558899999999999999998775543   689999999999998777654   245689


Q ss_pred             CCceEeccCCcccCCC--ChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcc-cccCCCCcEE
Q 045210          617 RLQVLNLGNNTLSGEI--PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS-LQNCTELRLF  693 (873)
Q Consensus       617 ~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L  693 (873)
                      +|++|++++|.+++..  +..+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..|.. +..+++|++|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            9999999999998765  778999999999999999999888899999999999999999999877654 8899999999


Q ss_pred             EccCCeecccCChhHHhhcccCcEEEccCCeeeee---CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcch
Q 045210          694 DISENEFVGNIPTWIGERLSGIILLSLRANQFHGF---FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEV  770 (873)
Q Consensus       694 ~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~  770 (873)
                      ++++|.+.+..|..+.. +++|++|++++|++.+.   .+..+..+++|+.|++++|.+++..|..++.+++|       
T Consensus       431 ~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------  502 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-------  502 (606)
T ss_dssp             ECTTCCCBTTCTTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-------
T ss_pred             ECCCCccCCcCHHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC-------
Confidence            99999999777777765 99999999999999872   33568889999999999999998888888877766       


Q ss_pred             hhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEecc
Q 045210          771 DKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFS  850 (873)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  850 (873)
                                                +.||+++|++++.+|..+.+++.| .|++++|.+++..|..++.+++|+.++++
T Consensus       503 --------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          503 --------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             --------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             --------------------------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence                                      899999999999999999999999 99999999999888889999999999999


Q ss_pred             CCccccccc
Q 045210          851 SNRLQGEIP  859 (873)
Q Consensus       851 ~N~l~g~iP  859 (873)
                      +|++.+..+
T Consensus       556 ~N~~~c~c~  564 (606)
T 3t6q_A          556 QNPLDCTCS  564 (606)
T ss_dssp             TCCEECSGG
T ss_pred             CCCccccCC
Confidence            999998766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.7e-53  Score=495.66  Aligned_cols=81  Identities=22%  Similarity=0.251  Sum_probs=67.7

Q ss_pred             cCCHHHHHHHHHhhhcCCCCC--------CCcCCCccCCCCCCccc---eeeEecCCCCcEEEEecCCCCCCCCCchhhh
Q 045210           34 GCIESEREALLSFKQDLEDPS--------NRLASWNNIGVGDCCKW---YGVVCDNITGHVLELRLRNPSRDDGSPAEYE  102 (873)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~--------~~~~~W~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~  102 (873)
                      +....|++||.++|+++.++.        ....+|+ . +++||.|   .||+|+. .|||++|+|++.           
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~-~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~-----------   91 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN-F-NKELDMWGAQPGVSLNS-NGRVTGLSLEGF-----------   91 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC-C-SSCGGGTTCCTTEEECT-TCCEEEEECTTS-----------
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC-C-CCCcccccCCCCeEEcC-CCCEEEEEecCc-----------
Confidence            344679999999999986443        1234798 4 6899999   9999975 499999999996           


Q ss_pred             hccccceeeecccCccCCCCCCeecCCCCCC
Q 045210          103 AYERSKIVGKINPSLLGLKHLIHLDLSYNDF  133 (873)
Q Consensus       103 ~~~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~  133 (873)
                           ++.|.+|++++++++|++|+|++|.+
T Consensus        92 -----~l~g~lp~~l~~L~~L~~L~Ls~N~~  117 (636)
T 4eco_A           92 -----GASGRVPDAIGQLTELEVLALGSHGE  117 (636)
T ss_dssp             -----CCEEEECGGGGGCTTCCEEESCCGGG
T ss_pred             -----ccCCcCChHHhcCccceEEECcCCcc
Confidence                 89999999999999999999999976

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.8e-51  Score=477.75  Aligned_cols=539  Identities=20%  Similarity=0.203  Sum_probs=405.0

Q ss_pred             CCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCcc
Q 045210          171 NLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLV  250 (873)
Q Consensus       171 ~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  250 (873)
                      .-++++.+++.++.+|...      .+++++|++++|.+++.+.  ..+.++++|++|++++|.++++.|.+|.++++|+
T Consensus        12 ~~~~~~c~~~~l~~ip~~~------~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A           12 PNITYQCMDQKLSKVPDDI------PSSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             TTTEEECTTSCCSSCCTTS------CTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCCceEccCCCcccCCCCC------CCCcCEEECCCCCcCEeCh--hhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            3468999999999998752      2789999999999988753  3578999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCC-CCchhhhcCCCcCEEEccC
Q 045210          251 TLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSY  329 (873)
Q Consensus       251 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~  329 (873)
                      +|++++|.+. +..|..+.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++
T Consensus        84 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           84 NLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             EEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             EeECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence            9999999997 5568889999999999999999998777889999999999999999986 6799999999999999999


Q ss_pred             CcCCccCcccccCCCCCC----EEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcch-hhHHHHHhhhcccccccEEEc
Q 045210          330 NELQGSIPGSLGNLTSIK----SLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQE-ISQVLDMFSACASNVLESLDL  404 (873)
Q Consensus       330 n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~L~~L~L  404 (873)
                      |.+++..|..++.+++|+    +|++++|.+++..+..+... +|+.|++++|.+.+. .+..+....     .++.+++
T Consensus       163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~l~l  236 (606)
T 3vq2_A          163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA-----GLHVHRL  236 (606)
T ss_dssp             SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTT-----TCEEEEE
T ss_pred             CcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccc-----ccccccc
Confidence            999988888887776654    89999999987655555544 788888888877642 222222211     1555555


Q ss_pred             cCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEc-cCccCCcccChhhhhcccccceEEcCCCeee
Q 045210          405 SNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDV-STNNLNGTLSENHFANLTKLVGFDASGNSLV  483 (873)
Q Consensus       405 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  483 (873)
                      ..+.+.+.        ..+..       +....+..+..+ .++.+++ ..+.+.+.++.  +..+++|+.+++++|.+.
T Consensus       237 ~~~~~~~~--------~~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~  298 (606)
T 3vq2_A          237 ILGEFKDE--------RNLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK  298 (606)
T ss_dssp             EEECCTTS--------CCCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC
T ss_pred             cccccccC--------Ccccc-------cChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccch
Confidence            43332211        00000       011111222222 3444454 44445444433  445555555555444332


Q ss_pred             ccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCc
Q 045210          484 LKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDL  563 (873)
Q Consensus       484 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~  563 (873)
                                                .+| ++..+++|+.|++++|.+ +.+|..   .+++|++|++++|...+.. .+
T Consensus       299 --------------------------~l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~-~~  346 (606)
T 3vq2_A          299 --------------------------YLE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF-KK  346 (606)
T ss_dssp             --------------------------CCC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC-CC
T ss_pred             --------------------------hhh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch-hh
Confidence                                      122 334455566666666666 455522   4566666666666443322 23


Q ss_pred             cccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcc--hhhhhhhcccCCCCceEeccCCcccCCCChhhhcccc
Q 045210          564 NDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTL--SRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSF  641 (873)
Q Consensus       564 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  641 (873)
                      ..+                     ++|++|++++|.+++..  +..    +..+++|++|++++|.+++ +|..+..+++
T Consensus       347 ~~l---------------------~~L~~L~ls~n~l~~~~~~~~~----~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~  400 (606)
T 3vq2_A          347 VAL---------------------PSLSYLDLSRNALSFSGCCSYS----DLGTNSLRHLDLSFNGAII-MSANFMGLEE  400 (606)
T ss_dssp             CCC---------------------TTCCEEECCSSCEEEEEECCHH----HHCCSCCCEEECCSCSEEE-ECCCCTTCTT
T ss_pred             ccC---------------------CCCCEEECcCCccCCCcchhhh----hccCCcccEeECCCCcccc-chhhccCCCC
Confidence            334                     45555556666555442  343    3448899999999999885 5688889999


Q ss_pred             CcEEEcCCCcCccCCc-ccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc-CChhHHhhcccCcEEE
Q 045210          642 LFFLHLGENDFTGNLP-TSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN-IPTWIGERLSGIILLS  719 (873)
Q Consensus       642 L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-ip~~~~~~l~~L~~L~  719 (873)
                      |+.|++++|++.+..| ..+..+++|++|++++|++++..|..+..+++|++|++++|++++. +|..+.. +++|+.|+
T Consensus       401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~  479 (606)
T 3vq2_A          401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLD  479 (606)
T ss_dssp             CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEE
T ss_pred             CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-CCCCCEEE
Confidence            9999999999998777 6788999999999999999998999999999999999999999874 6766664 99999999


Q ss_pred             ccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEE
Q 045210          720 LRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVL  799 (873)
Q Consensus       720 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  799 (873)
                      +++|++++..|..+..+++|+.|++++|++++.+|..++++++|                                 +.|
T Consensus       480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L  526 (606)
T 3vq2_A          480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL---------------------------------STL  526 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC---------------------------------CEE
T ss_pred             CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC---------------------------------CEE
Confidence            99999999999999999999999999999998889888877766                                 899


Q ss_pred             ECCCCcccccCChhhhcCC-CCCeeeCCCCcCcccCC
Q 045210          800 DLSANYFSGEIPSQVTNLV-GLQTLKLSHNFFSGRIP  835 (873)
Q Consensus       800 ~ls~n~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~ip  835 (873)
                      |+++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus       527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999998 6888899887 59999999999997665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.6e-50  Score=474.70  Aligned_cols=359  Identities=21%  Similarity=0.255  Sum_probs=239.0

Q ss_pred             cccCCHHHHHHHHHhhhcCCCCCCCcCCCccCC---CCCC--ccc------------eeeEecCCCCcEEEEecCCCCCC
Q 045210           32 AAGCIESEREALLSFKQDLEDPSNRLASWNNIG---VGDC--CKW------------YGVVCDNITGHVLELRLRNPSRD   94 (873)
Q Consensus        32 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~---~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~   94 (873)
                      .+++..+|++||++||+++.+|     +|+..+   ..+|  |.|            .||+|+. .|||++|+|++.   
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~---  333 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF---  333 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence            3446678999999999999776     787431   1355  999            9999976 699999999996   


Q ss_pred             CCCchhhhhccccceeeecccCccCCCCCCeecC-CCCCCCCCCCCccc-------------------------------
Q 045210           95 DGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDL-SYNDFQGIQIPRFL-------------------------------  142 (873)
Q Consensus        95 ~~~~~~~~~~~~~~~~g~~~~~l~~l~~L~~L~L-s~n~~~~~~~~~~l-------------------------------  142 (873)
                                   ++.|.+|++|+++++|++|+| ++|.+.+. .|...                               
T Consensus       334 -------------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~  399 (876)
T 4ecn_A          334 -------------GAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN  399 (876)
T ss_dssp             -------------CCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred             -------------CCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence                         899999999999999999999 88876554 12110                               


Q ss_pred             --------------------cCCCCCCEEeccC--CcCCCCCcccccCCCCCcEEECCCCCCCCC--ccCccccccCCCC
Q 045210          143 --------------------GSLENLMYLNISR--AGFVGIIPHQIGNLSNLQFLDLRPNYLGGL--YVEDFGWVSHLSL  198 (873)
Q Consensus       143 --------------------~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l--~~~~~~~l~~l~~  198 (873)
                                          .....++.+.+..  |.+++ +|..++++++|++|+|++|.++..  +...   +.    
T Consensus       400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---~~----  471 (876)
T 4ecn_A          400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---ED----  471 (876)
T ss_dssp             SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---SC----
T ss_pred             hhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---cc----
Confidence                                1111222222222  45555 566666666666666666655431  0000   00    


Q ss_pred             CcEEeCCCCCCCCCCCcccccc--CCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCC-CCCC-chhHhhcCCC--
Q 045210          199 LKHLDLSGVDLSKTSDGPLITN--SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ-FADS-SIVNQVLGLV--  272 (873)
Q Consensus       199 L~~L~L~~~~l~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~~l~--  272 (873)
                           .+.+...+  ..+..++  .+++|++|++++|.+.+..|..|+++++|++|++++|+ ++ + .+|..++.++  
T Consensus       472 -----~s~n~~~g--~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls-g~~iP~~i~~L~~~  543 (876)
T 4ecn_A          472 -----ANSDYAKQ--YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLADD  543 (876)
T ss_dssp             -----TTSHHHHH--HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC-HHHHHHHHHHHHHC
T ss_pred             -----cccccccc--cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc-cccchHHHHhhhhc
Confidence                 00000000  0122334  77778888888888777778888888888888888887 65 5 5676665544  


Q ss_pred             -----CCcEEEccCCcCCCCChh--hhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCC
Q 045210          273 -----NLVFLDLSTNNFQGAVPD--AIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS  345 (873)
Q Consensus       273 -----~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  345 (873)
                           +|++|++++|.++ .+|.  .+.++++|++|++++|.++ .+| .++.+++|++|++++|.++ .+|..+..+++
T Consensus       544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~  619 (876)
T 4ecn_A          544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD  619 (876)
T ss_dssp             TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred             ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccc
Confidence                 7777777777777 6666  6777777777777777777 666 6777777777777777777 66766777777


Q ss_pred             -CCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCcccc---ccC--C
Q 045210          346 -IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN---QIG--N  419 (873)
Q Consensus       346 -L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l~--~  419 (873)
                       |++|++++|.++ .+|..+..++.                           +.|+.|++++|.+.+.+|.   .++  .
T Consensus       620 ~L~~L~Ls~N~L~-~lp~~~~~~~~---------------------------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~  671 (876)
T 4ecn_A          620 QVEGLGFSHNKLK-YIPNIFNAKSV---------------------------YVMGSVDFSYNKIGSEGRNISCSMDDYK  671 (876)
T ss_dssp             TCCEEECCSSCCC-SCCSCCCTTCS---------------------------SCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred             cCCEEECcCCCCC-cCchhhhcccc---------------------------CCCCEEECcCCcCCCccccchhhhcccc
Confidence             777777777776 45554444332                           1255666666666554432   122  3


Q ss_pred             CCCCCEEeCCCCccCccccccc-cCCCCCCEEEccCccCCcccCh
Q 045210          420 FKNLDSLDLSFNNISGHIPLSL-GQLSSLRYLDVSTNNLNGTLSE  463 (873)
Q Consensus       420 l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~  463 (873)
                      +++|+.|++++|+++ .+|..+ ..+++|++|++++|++. .+|.
T Consensus       672 ~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~  714 (876)
T 4ecn_A          672 GINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE  714 (876)
T ss_dssp             CCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred             CCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence            458899999999988 556554 47889999999999887 5555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-48  Score=469.56  Aligned_cols=534  Identities=22%  Similarity=0.239  Sum_probs=325.5

Q ss_pred             eecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCC-CCCccCccccccCCCCCcEEe
Q 045210          125 HLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYL-GGLYVEDFGWVSHLSLLKHLD  203 (873)
Q Consensus       125 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~l~~L~~L~  203 (873)
                      ..|.++++++.  +|.   ..++|++|+|++|.+++..|..|+++++|++|++++|.. ..+++.               
T Consensus         8 ~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~---------------   67 (844)
T 3j0a_A            8 IAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE---------------   67 (844)
T ss_dssp             EEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTT---------------
T ss_pred             EEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHH---------------
Confidence            34455555554  454   346677777777777766677777777777777776632 222222               


Q ss_pred             CCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHh--hcCCCCCcEEEccC
Q 045210          204 LSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQ--VLGLVNLVFLDLST  281 (873)
Q Consensus       204 L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~  281 (873)
                                    .+.++++|++|++++|.+.+..|..|+++++|++|++++|.+. +.++..  +.++++|++|++++
T Consensus        68 --------------~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~L~~L~~L~Ls~  132 (844)
T 3j0a_A           68 --------------AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS-DAVLKDGYFRNLKALTRLDLSK  132 (844)
T ss_dssp             --------------TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCS-SCCSTTCCCSSCSSCCEEEEES
T ss_pred             --------------HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCC-cccccCccccccCCCCEEECCC
Confidence                          2334444555555555555555555666666666666666655 322322  55666666666666


Q ss_pred             CcCCCCCh-hhhcCCCCCCEEECCCCCCCCCCchhhhcC--CCcCEEEccCCcCCccCcccccCCCC------CCEEeCC
Q 045210          282 NNFQGAVP-DAIQNSTSLQHLDLSRNHFSSSVPDWFNKF--IDLEYLSLSYNELQGSIPGSLGNLTS------IKSLDLS  352 (873)
Q Consensus       282 n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~  352 (873)
                      |.+++..+ ..++++++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..|..++.+++      |++|+++
T Consensus       133 N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls  212 (844)
T 3j0a_A          133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS  212 (844)
T ss_dssp             CCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred             CcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence            66655433 456666666666666666666666666655  66666777766666666655555544      6777777


Q ss_pred             CCcCCCcchhhhhcC---CCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCC--CCCCEEe
Q 045210          353 FNRLESKIPRAFKRL---RHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNF--KNLDSLD  427 (873)
Q Consensus       353 ~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~  427 (873)
                      +|.+++..+..+...   .+++.+.+..+....                    .+..+.+.+.....+..+  ++|+.|+
T Consensus       213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~--------------------~~~~~~l~~~~~~~f~~l~~~~L~~L~  272 (844)
T 3j0a_A          213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGA--------------------GFGFHNIKDPDQNTFAGLARSSVRHLD  272 (844)
T ss_dssp             SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC--------------------SSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred             CCcCchhHHHHHHhhcCcccccceecccccccc--------------------cccccccCCCChhhhhccccCCccEEE
Confidence            776666555554432   345555555322211                    001111222222222222  3455555


Q ss_pred             CCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEecccccc
Q 045210          428 LSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFI  507 (873)
Q Consensus       428 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~  507 (873)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+. .|..+++|+.|++++|.+.                        
T Consensus       273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~------------------------  327 (844)
T 3j0a_A          273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLG------------------------  327 (844)
T ss_dssp             CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCS------------------------
T ss_pred             CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCC------------------------
Confidence            555554444444444555555555555544422222 3444444444444433322                        


Q ss_pred             CCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCC
Q 045210          508 GPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP  587 (873)
Q Consensus       508 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  587 (873)
                       ...|..+..+++|+.|++++|.+.+ ++...+..+++|++|++++|.+++.    ..+++|+.|++++|++. .+|...
T Consensus       328 -~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~L~~L~l~~N~l~-~l~~~~  400 (844)
T 3j0a_A          328 -ELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTI----HFIPSIPDIFLSGNKLV-TLPKIN  400 (844)
T ss_dssp             -CCCSCSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCC----SSCCSCSEEEEESCCCC-CCCCCC
T ss_pred             -ccCHHHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcc----cCCCCcchhccCCCCcc-cccccc
Confidence             1223334445555555555555532 3333344556666666666665532    22566777777777776 445556


Q ss_pred             CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCCh-hhhccccCcEEEcCCCcCc-----cCCccccc
Q 045210          588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPD-CWMNWSFLFFLHLGENDFT-----GNLPTSLG  661 (873)
Q Consensus       588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~-----~~~p~~l~  661 (873)
                      .+++.+++++|.+++.....+   +.++++|+.|++++|++++..+. .+..+++|+.|++++|.+.     +..|..+.
T Consensus       401 ~~l~~L~ls~N~l~~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  477 (844)
T 3j0a_A          401 LTANLIHLSENRLENLDILYF---LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE  477 (844)
T ss_dssp             TTCCEEECCSCCCCSSTTHHH---HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred             cccceeecccCccccCchhhh---hhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence            778888888888876433221   34588899999999999865443 4556789999999999987     44456788


Q ss_pred             CCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCE
Q 045210          662 TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKI  741 (873)
Q Consensus       662 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  741 (873)
                      .+++|+.|+|++|++++..|..+..+++|+.|+|++|++++ +|...+  .++|+.|++++|++++.+|..+   ++|+.
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~--~~~L~~L~Ls~N~l~~~~~~~~---~~L~~  551 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDL--PANLEILDISRNQLLAPNPDVF---VSLSV  551 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCC--CSCCCEEEEEEECCCCCCSCCC---SSCCE
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhh--hccccEEECCCCcCCCCChhHh---CCcCE
Confidence            89999999999999998888889999999999999999985 444443  3889999999999999888765   47889


Q ss_pred             EeCCCCccccccC
Q 045210          742 LDLSSNNLTGVIP  754 (873)
Q Consensus       742 L~Ls~N~l~~~ip  754 (873)
                      |++++|++.+..+
T Consensus       552 l~l~~Np~~C~c~  564 (844)
T 3j0a_A          552 LDITHNKFICECE  564 (844)
T ss_dssp             EEEEEECCCCSSS
T ss_pred             EEecCCCcccccc
Confidence            9999999887554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-48  Score=467.14  Aligned_cols=531  Identities=22%  Similarity=0.246  Sum_probs=318.6

Q ss_pred             EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCch-hHhhcCCCCCcEEEc
Q 045210          201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSI-VNQVLGLVNLVFLDL  279 (873)
Q Consensus       201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L  279 (873)
                      ..+.++++++.+|.      ..+++++|++++|.++++.+..|.++++|++|++++|... +.+ +..+.++++|++|+|
T Consensus         8 ~~dcs~~~L~~vP~------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~L   80 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDL   80 (844)
T ss_dssp             EEEESCCCSSCCCS------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEEC
T ss_pred             EEEccCCCCCCCCC------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEEC
Confidence            34555555665542      3467888888888888888888888888888888888654 444 567778888888888


Q ss_pred             cCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchh--hhcCCCcCEEEccCCcCCccCc-ccccCCCCCCEEeCCCCcC
Q 045210          280 STNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW--FNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFNRL  356 (873)
Q Consensus       280 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l  356 (873)
                      ++|.+++..|..+.++++|++|++++|.+++.+|..  ++++++|++|++++|.+++..+ ..++++++|++|++++|.+
T Consensus        81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            888887777778888888888888888877655554  7777777888877777775543 4577777777777777777


Q ss_pred             CCcchhhhhcC--CCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCC------CCEEeC
Q 045210          357 ESKIPRAFKRL--RHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKN------LDSLDL  428 (873)
Q Consensus       357 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L  428 (873)
                      ++..+..+..+  ++                             |+.|++++|.+.+..|..++.+++      |++|++
T Consensus       161 ~~~~~~~l~~l~~~~-----------------------------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L  211 (844)
T 3j0a_A          161 FLVCEHELEPLQGKT-----------------------------LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV  211 (844)
T ss_dssp             CCCCSGGGHHHHHCS-----------------------------SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred             CeeCHHHcccccCCc-----------------------------cceEECCCCccccccccchhhcCCccccCceeEEec
Confidence            76666665544  33                             555666666665555555555544      788888


Q ss_pred             CCCccCccccccccCC---CCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCC--CCccccEEecc
Q 045210          429 SFNNISGHIPLSLGQL---SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWT--PPFQLQAIGLS  503 (873)
Q Consensus       429 ~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~  503 (873)
                      ++|.+++..+..+...   .+++.+.+..+........                +.+... ....+.  .+.+++.|+++
T Consensus       212 s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~----------------~~l~~~-~~~~f~~l~~~~L~~L~Ls  274 (844)
T 3j0a_A          212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF----------------HNIKDP-DQNTFAGLARSSVRHLDLS  274 (844)
T ss_dssp             SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC----------------SSSTTG-GGTTTTTTTTSCCCEEECT
T ss_pred             CCCcCchhHHHHHHhhcCcccccceecccccccccccc----------------cccCCC-ChhhhhccccCCccEEECC
Confidence            8887777666655432   4566676664332211100                000000 000000  12344444454


Q ss_pred             ccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCC
Q 045210          504 SCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGP  582 (873)
Q Consensus       504 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~  582 (873)
                      +|.+....+..+..+++|+.|++++|++.+..|. .+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+.
T Consensus       275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  353 (844)
T 3j0a_A          275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII  353 (844)
T ss_dssp             TCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred             CCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence            4444444455555566666666666665543332 23445556666666665555444 455555555555555544433


Q ss_pred             CCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccC
Q 045210          583 LPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGT  662 (873)
Q Consensus       583 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~  662 (873)
                      .                     +..    +..+++|+.|++++|.+++.     ..+++|+.|++++|+++ .+|..   
T Consensus       354 ~---------------------~~~----~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---  399 (844)
T 3j0a_A          354 Q---------------------DQT----FKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---  399 (844)
T ss_dssp             C---------------------SSC----SCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---
T ss_pred             C---------------------hhh----hcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---
Confidence            2                     221    23355566666666655521     12555666666666665 33432   


Q ss_pred             CCCccEEEccCCcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeee-----eeCCcccCCC
Q 045210          663 LSSLQILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFH-----GFFPPELCGL  736 (873)
Q Consensus       663 l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l  736 (873)
                      ..+++.|++++|++++... ..+..+++|+.|++++|++++..+......+++|+.|++++|.+.     +..|..+..+
T Consensus       400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l  479 (844)
T 3j0a_A          400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL  479 (844)
T ss_dssp             CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred             ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence            3456666666666654321 223456666666666666654333322223566666666666665     3334456666


Q ss_pred             CCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhc
Q 045210          737 ASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTN  816 (873)
Q Consensus       737 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~  816 (873)
                      ++|+.|+|++|.+++..|..+..+++|                                 +.|||++|++++..|..+. 
T Consensus       480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L~Ls~N~l~~l~~~~~~-  525 (844)
T 3j0a_A          480 SHLQVLYLNHNYLNSLPPGVFSHLTAL---------------------------------RGLSLNSNRLTVLSHNDLP-  525 (844)
T ss_dssp             CCEECCCCCHHHHTTCCTTSSSSCCSC---------------------------------SEEEEESCCCSSCCCCCCC-
T ss_pred             ccccEEECCCCcccccChhHccchhhh---------------------------------heeECCCCCCCccChhhhh-
Confidence            777777777777776666666555554                                 6677777777755554444 


Q ss_pred             CCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccc
Q 045210          817 LVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGE  857 (873)
Q Consensus       817 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  857 (873)
                       ++|+.|+|++|++++.+|..+   .+|+.+++++|++.+.
T Consensus       526 -~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          526 -ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE  562 (844)
T ss_dssp             -SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred             -ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence             667777777777777776654   3566777777776653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.9e-47  Score=441.32  Aligned_cols=187  Identities=20%  Similarity=0.231  Sum_probs=105.6

Q ss_pred             CCCCceEeccCCcccCCC--ChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcE
Q 045210          615 SMRLQVLNLGNNTLSGEI--PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL  692 (873)
Q Consensus       615 ~~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  692 (873)
                      +++|++|++++|++++..  |..+..+++|++|++++|++.+                        ..+. +..+++|++
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~~~-~~~l~~L~~  400 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------------------------MSSN-FLGLEQLEH  400 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE------------------------EEEE-EETCTTCCE
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc------------------------cccc-ccccCCCCE
Confidence            455555556555555332  4445555555555555555543                        2222 444455555


Q ss_pred             EEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccc-cccChhhhhhhcCchhhcchh
Q 045210          693 FDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT-GVIPRCINNLAGMAKEVLEVD  771 (873)
Q Consensus       693 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~~~~~~~  771 (873)
                      |++++|.+.+..|...+..+++|++|++++|++.+..|..+..+++|+.|++++|.++ +.+|..++.+++|        
T Consensus       401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L--------  472 (570)
T 2z63_A          401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------  472 (570)
T ss_dssp             EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------
T ss_pred             EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC--------
Confidence            5555555544333222223555555555555555555555666666666666666665 4555555554444        


Q ss_pred             hhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccC
Q 045210          772 KFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSS  851 (873)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  851 (873)
                                               +.||+++|++++..|..++++++|++|++++|.+++..|..++.+++|+.|++++
T Consensus       473 -------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          473 -------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             -------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence                                     5666666666666666666666666666666666666666666666666666666


Q ss_pred             Cccccccc
Q 045210          852 NRLQGEIP  859 (873)
Q Consensus       852 N~l~g~iP  859 (873)
                      |++++.+|
T Consensus       528 N~~~~~~~  535 (570)
T 2z63_A          528 NPWDCSCP  535 (570)
T ss_dssp             SCBCCCTT
T ss_pred             CcccCCCc
Confidence            66666665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.2e-45  Score=424.87  Aligned_cols=490  Identities=23%  Similarity=0.245  Sum_probs=310.3

Q ss_pred             CCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEE
Q 045210          223 HSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD  302 (873)
Q Consensus       223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  302 (873)
                      +++++|++++|.++++.+.+|.++++|++|++++|.++ +..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            35666666666666666666666666666666666664 22234455556666666666655554455555556666666


Q ss_pred             CCCCCCCCCCchhhhcCCCcCEEEccCCcCCc-cCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 045210          303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS  381 (873)
Q Consensus       303 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  381 (873)
                      +++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+..++.+++|           
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  175 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-----------  175 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC-----------
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc-----------
Confidence            66555554333345555555555555555554 245555555555555555555554444444443333           


Q ss_pred             chhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCc-cccccccCCCCCCEEEccCccCCcc
Q 045210          382 QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG-HIPLSLGQLSSLRYLDVSTNNLNGT  460 (873)
Q Consensus       382 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~  460 (873)
                                   ... .+.+++++|.+.+..+..+..+ +|++|++++|.... .++..+..++.++...+....+...
T Consensus       176 -------------~~~-~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  240 (570)
T 2z63_A          176 -------------PLL-NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  240 (570)
T ss_dssp             -------------TTC-CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred             -------------chh-hhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence                         000 1344444444444444433333 45555555543221 2333444444444444332211100


Q ss_pred             cChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHH
Q 045210          461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV  540 (873)
Q Consensus       461 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~  540 (873)
                               ..++.+  .                                 ...+..++++                   
T Consensus       241 ---------~~l~~~--~---------------------------------~~~~~~l~~l-------------------  257 (570)
T 2z63_A          241 ---------GNLEKF--D---------------------------------KSALEGLCNL-------------------  257 (570)
T ss_dssp             ---------SSCEEC--C---------------------------------TTTTGGGGGS-------------------
T ss_pred             ---------hhhhhc--c---------------------------------hhhhcccccc-------------------
Confidence                     000000  0                                 0000000000                   


Q ss_pred             hcCCCCcEEeccCc-ccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCC
Q 045210          541 KSLSQINYLNLSYN-QIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRL  618 (873)
Q Consensus       541 ~~l~~L~~L~l~~n-~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L  618 (873)
                          .++.+++.++ .+.+..+ .+..+++|++|++++|.+.+                      +|..    +..+ +|
T Consensus       258 ----~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~----------------------l~~~----~~~~-~L  306 (570)
T 2z63_A          258 ----TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER----------------------VKDF----SYNF-GW  306 (570)
T ss_dssp             ----EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS----------------------CCBC----CSCC-CC
T ss_pred             ----chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh----------------------hhhh----hccC-Cc
Confidence                1223333333 2222222 33334444444444433321                      1111    2224 66


Q ss_pred             ceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccC--CcccccCCCCcEEEcc
Q 045210          619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI--PVSLQNCTELRLFDIS  696 (873)
Q Consensus       619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls  696 (873)
                      ++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|+++
T Consensus       307 ~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  381 (570)
T 2z63_A          307 QHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS  381 (570)
T ss_dssp             SEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred             cEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence            77777777776 4444  4677888888888887766654  67899999999999988654  7788899999999999


Q ss_pred             CCeecccCChhHHhhcccCcEEEccCCeeeeeCC-cccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210          697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGFFP-PELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE  775 (873)
Q Consensus       697 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~  775 (873)
                      +|.+.+ +|..+. .+++|+.|++++|++.+..| ..+..+++|+.|++++|.+++.+|..++.+++|            
T Consensus       382 ~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  447 (570)
T 2z63_A          382 FNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------  447 (570)
T ss_dssp             SCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------------
T ss_pred             CCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC------------
Confidence            999985 555555 49999999999999998876 568899999999999999999999888877766            


Q ss_pred             hheeeecccceeccCCCCccceEEECCCCccc-ccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcc
Q 045210          776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFS-GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL  854 (873)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  854 (873)
                                           +.|++++|.++ +.+|..++.+++|++|++++|.+++..|..++.+++|+.|++++|++
T Consensus       448 ---------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          448 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             ---------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ---------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence                                 89999999998 68999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCcccC
Q 045210          855 QGEIPKNMVNLEFLEIFNI  873 (873)
Q Consensus       855 ~g~iP~~l~~l~~L~~l~l  873 (873)
                      ++..|..+.+++.|+++++
T Consensus       507 ~~~~~~~~~~l~~L~~L~l  525 (570)
T 2z63_A          507 KSVPDGIFDRLTSLQKIWL  525 (570)
T ss_dssp             SCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCHHHhhcccCCcEEEe
Confidence            9988888999999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.3e-45  Score=421.86  Aligned_cols=481  Identities=20%  Similarity=0.208  Sum_probs=353.1

Q ss_pred             cEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCC
Q 045210          275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN  354 (873)
Q Consensus       275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  354 (873)
                      ...+.+++.++ .+|..+.  ++|++|++++|.+++..|..++++++|++|++++|++++..|..|+.+++|++|++++|
T Consensus         8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   84 (549)
T 2z81_A            8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN   84 (549)
T ss_dssp             SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             ceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence            34566666666 4555443  56777777777777666667777777777777777777666666777777777777777


Q ss_pred             cCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC-ccccccCCCCCCCEEeCCCCcc
Q 045210          355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG-LLTNQIGNFKNLDSLDLSFNNI  433 (873)
Q Consensus       355 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l  433 (873)
                      .+++..+..++.+++                             |++|++++|.+++ ..|..++.+++|++|++++|++
T Consensus        85 ~l~~~~~~~~~~l~~-----------------------------L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~  135 (549)
T 2z81_A           85 HLSSLSSSWFGPLSS-----------------------------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET  135 (549)
T ss_dssp             CCCSCCHHHHTTCTT-----------------------------CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred             ccCccCHHHhccCCC-----------------------------CcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence            777666666666665                             4444444444444 2456788889999999999885


Q ss_pred             Ccccc-ccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcc
Q 045210          434 SGHIP-LSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP  512 (873)
Q Consensus       434 ~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  512 (873)
                      .+.+| ..+.++++|++|++++|.+++.++. .+..+++|+.+++++|...                          .+|
T Consensus       136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~--------------------------~~~  188 (549)
T 2z81_A          136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA--------------------------FLL  188 (549)
T ss_dssp             CCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST--------------------------THH
T ss_pred             ccccCHhhhhcccccCeeeccCCcccccChh-hhhccccCceEecccCccc--------------------------ccc
Confidence            44554 5788889999999999988866655 5777777777777766532                          123


Q ss_pred             hh-hhcCCcccEEEccCCCCCccc--ChhHHhcCCCCcEEeccCcccccccC-----CccccCCCCeEeCCCCCCCCC--
Q 045210          513 QW-LLSQNHLIYLDLSNSSISDTI--PDRLVKSLSQINYLNLSYNQIFGQIP-----DLNDAAQLETLDLSSNSLSGP--  582 (873)
Q Consensus       513 ~~-l~~~~~L~~L~l~~n~l~~~~--p~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~--  582 (873)
                      .+ +..+++|++|++++|++.+..  |......+++|+.|++++|.+.+..+     .+..+++|+.+++++|.+.+.  
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~  268 (549)
T 2z81_A          189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD  268 (549)
T ss_dssp             HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred             hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence            33 345777777888777776532  33334456678888888877765333     345567788888888876552  


Q ss_pred             -------CCCCCCCCcEEEccCccCcCcchh-hhhhhcccCCCCceEeccCCcccCCCChhh-hccccCcEEEcCCCcCc
Q 045210          583 -------LPLIPSSLTTLDLSSNFLSGTLSR-FLCNEMNNSMRLQVLNLGNNTLSGEIPDCW-MNWSFLFFLHLGENDFT  653 (873)
Q Consensus       583 -------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~  653 (873)
                             .+....+++.+++.++.+...... .+...+....+|+.|++++|.+. .+|..+ ..+++|++|++++|+++
T Consensus       269 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~  347 (549)
T 2z81_A          269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV  347 (549)
T ss_dssp             CCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCC
T ss_pred             ccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccc
Confidence                   123357888888888876542100 00000122578999999999987 677666 57999999999999999


Q ss_pred             cCCc---ccccCCCCccEEEccCCcccccCC--cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210          654 GNLP---TSLGTLSSLQILHLRGNRFSGKIP--VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF  728 (873)
Q Consensus       654 ~~~p---~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  728 (873)
                      +.+|   ..++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+.. +++|++|++++|++++ 
T Consensus       348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-~~~L~~L~Ls~N~l~~-  424 (549)
T 2z81_A          348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW-PEKMRFLNLSSTGIRV-  424 (549)
T ss_dssp             HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-CTTCCEEECTTSCCSC-
T ss_pred             cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-cccccEEECCCCCccc-
Confidence            8764   347889999999999999986543  56889999999999999998 78887764 8999999999999874 


Q ss_pred             CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210          729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG  808 (873)
Q Consensus       729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  808 (873)
                      +|..+  .++|+.||+++|++++.+    +.+                                 +.|+.||+++|+++ 
T Consensus       425 l~~~~--~~~L~~L~Ls~N~l~~~~----~~l---------------------------------~~L~~L~Ls~N~l~-  464 (549)
T 2z81_A          425 VKTCI--PQTLEVLDVSNNNLDSFS----LFL---------------------------------PRLQELYISRNKLK-  464 (549)
T ss_dssp             CCTTS--CTTCSEEECCSSCCSCCC----CCC---------------------------------TTCCEEECCSSCCS-
T ss_pred             ccchh--cCCceEEECCCCChhhhc----ccC---------------------------------ChhcEEECCCCccC-
Confidence            44443  368999999999998643    223                                 34589999999998 


Q ss_pred             cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccc
Q 045210          809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP  859 (873)
Q Consensus       809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  859 (873)
                      .||. .+.+++|++|+|++|++++.+|..++.+++|+.|++++|++++..|
T Consensus       465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            7887 5789999999999999999999999999999999999999999887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.6e-44  Score=414.58  Aligned_cols=490  Identities=20%  Similarity=0.215  Sum_probs=273.9

Q ss_pred             CCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEE
Q 045210          123 LIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHL  202 (873)
Q Consensus       123 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L  202 (873)
                      ..+.|.+++.++.  +|..+.  ++|++|++++|.+++..|.+++++++|++|++++|.++.+++..   +.++++|++|
T Consensus         7 ~~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L   79 (549)
T 2z81_A            7 SGVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA---FYSLGSLEHL   79 (549)
T ss_dssp             TSEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT---TTTCTTCCEE
T ss_pred             CceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh---ccccccCCEE
Confidence            3345666777764  566543  67888888888887777777888888888888888777655432   2444455555


Q ss_pred             eCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCC-CccccCCCCCccEEEcCCCCCCCCchh-HhhcCCCCCcEEEcc
Q 045210          203 DLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI-SPLSFANFSSLVTLDISDNQFADSSIV-NQVLGLVNLVFLDLS  280 (873)
Q Consensus       203 ~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~  280 (873)
                      ++++|.+++.+  +..++.+++|++|++++|.+++. .+..++++++|++|++++|.+. +.++ ..+.++++|++|+++
T Consensus        80 ~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           80 DLSDNHLSSLS--SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-SEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             ECTTSCCCSCC--HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-CEECTTTTTTCCEEEEEEEE
T ss_pred             ECCCCccCccC--HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc-cccCHhhhhcccccCeeecc
Confidence            55555444432  12234455555555555555442 2344555555555555555422 2222 234444555555555


Q ss_pred             CCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhh-hcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCc
Q 045210          281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWF-NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK  359 (873)
Q Consensus       281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  359 (873)
                      +|.+++..|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+++....                     
T Consensus       157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------  214 (549)
T 2z81_A          157 ALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS---------------------  214 (549)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------
T ss_pred             CCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc---------------------
Confidence            55554444444444444555555444443 222222 2344444444444444432100                     


Q ss_pred             chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCcc------ccccCCCCCCCEEeCCCCcc
Q 045210          360 IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLL------TNQIGNFKNLDSLDLSFNNI  433 (873)
Q Consensus       360 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l  433 (873)
                      .......+++|+.|++++|.+++..+..+....... ..++.+++++|.+.+..      ...+..+++|+.|++.++.+
T Consensus       215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i  293 (549)
T 2z81_A          215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI-LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI  293 (549)
T ss_dssp             CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC-TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred             ccchhhhhhcccceeccccccchhHHHHHHHHhhhh-ccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence            001112344555555555555444333222111111 12555666655554421      12345567777777777765


Q ss_pred             Ccc-----ccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccC
Q 045210          434 SGH-----IPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG  508 (873)
Q Consensus       434 ~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  508 (873)
                      ...     ++..+...++|++|++++|.+. .+|...+..+++|+.|++++|.+...                       
T Consensus       294 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~-----------------------  349 (549)
T 2z81_A          294 PQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE-----------------------  349 (549)
T ss_dssp             SCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHH-----------------------
T ss_pred             chhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccc-----------------------
Confidence            422     1111223456777777777765 56665555667776666666655432                       


Q ss_pred             CCcc---hhhhcCCcccEEEccCCCCCcccC-hhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCC
Q 045210          509 PQFP---QWLLSQNHLIYLDLSNSSISDTIP-DRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLP  584 (873)
Q Consensus       509 ~~~~---~~l~~~~~L~~L~l~~n~l~~~~p-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  584 (873)
                        .|   .++..+++|++|++++|++.+..+ ...+..+++|++|++++|++++..+.+..+++|++|++++|.+.+...
T Consensus       350 --~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~  427 (549)
T 2z81_A          350 --YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT  427 (549)
T ss_dssp             --HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCT
T ss_pred             --cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccc
Confidence              11   124455667777777776654321 133455666777777777666433355555666666666665543222


Q ss_pred             CCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCC
Q 045210          585 LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLS  664 (873)
Q Consensus       585 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~  664 (873)
                      ..+                            ++|++|++++|++++.+    ..+++|++|++++|+++ .+|. ...++
T Consensus       428 ~~~----------------------------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~  473 (549)
T 2z81_A          428 CIP----------------------------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFP  473 (549)
T ss_dssp             TSC----------------------------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCT
T ss_pred             hhc----------------------------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCc
Confidence            122                            35666666666666532    45677888888888877 5665 45678


Q ss_pred             CccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCC
Q 045210          665 SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIP  705 (873)
Q Consensus       665 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  705 (873)
                      +|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus       474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            88888888888888878888888888888888888887776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.4e-45  Score=417.09  Aligned_cols=456  Identities=20%  Similarity=0.217  Sum_probs=310.7

Q ss_pred             cEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCC
Q 045210          275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN  354 (873)
Q Consensus       275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  354 (873)
                      +++++++|+++ .+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|++++..|..|+.+++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            35666666666 3454443  56666666666666555555666666666666666666555555566666666666665


Q ss_pred             cCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC-ccccccCCCCCCCEEeCCCCcc
Q 045210          355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG-LLTNQIGNFKNLDSLDLSFNNI  433 (873)
Q Consensus       355 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l  433 (873)
                      ++++ +|..  .+++                             |++|++++|.+++ .+|..++.+++|++|++++|++
T Consensus        80 ~l~~-lp~~--~l~~-----------------------------L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           80 KLVK-ISCH--PTVN-----------------------------LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             CCCE-EECC--CCCC-----------------------------CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             ceee-cCcc--ccCC-----------------------------ccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence            5542 3322  2222                             5555555555554 3455666777777777777776


Q ss_pred             CccccccccCCCCC--CEEEccCccC--CcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCC
Q 045210          434 SGHIPLSLGQLSSL--RYLDVSTNNL--NGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGP  509 (873)
Q Consensus       434 ~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  509 (873)
                      ++   ..+..+++|  ++|++++|.+  .+..+. .+..+..                                      
T Consensus       128 ~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~-~l~~l~~--------------------------------------  165 (520)
T 2z7x_B          128 EK---SSVLPIAHLNISKVLLVLGETYGEKEDPE-GLQDFNT--------------------------------------  165 (520)
T ss_dssp             CG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT-TTTTCCE--------------------------------------
T ss_pred             ch---hhccccccceeeEEEeecccccccccccc-ccccccc--------------------------------------
Confidence            64   234555555  7777776666  433332 2222211                                      


Q ss_pred             CcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcc-------cccccCCccccCCCCeEeCCCCCCCCC
Q 045210          510 QFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ-------IFGQIPDLNDAAQLETLDLSSNSLSGP  582 (873)
Q Consensus       510 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~~~~L~~L~l~~n~l~~~  582 (873)
                                +...+++++|.+.+.++...+..+++|+.+++++|.       +.+.++.+..+++|+.|++++|.+.+.
T Consensus       166 ----------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  235 (520)
T 2z7x_B          166 ----------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN  235 (520)
T ss_dssp             ----------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred             ----------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence                      122334444444444444444445555555555554       444445555566666666666555432


Q ss_pred             CCC------CCCCCcEEEccCccCcCcchhhhhh-hcccCCCCceEeccCCcccCCCC-hhhhcc---ccCcEEEcCCCc
Q 045210          583 LPL------IPSSLTTLDLSSNFLSGTLSRFLCN-EMNNSMRLQVLNLGNNTLSGEIP-DCWMNW---SFLFFLHLGEND  651 (873)
Q Consensus       583 ~~~------~~~~L~~L~l~~n~l~~~~~~~~~~-~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l---~~L~~L~l~~n~  651 (873)
                      .+.      ..++|++|++++|.++|.+|..+.. ....+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.
T Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~  313 (520)
T 2z7x_B          236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR  313 (520)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence            111      1246777777777777766654311 014588899999999998  556 556555   679999999999


Q ss_pred             CccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecc--cCChhHHhhcccCcEEEccCCeeeeeC
Q 045210          652 FTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG--NIPTWIGERLSGIILLSLRANQFHGFF  729 (873)
Q Consensus       652 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~L~~n~l~~~~  729 (873)
                      +.+..  ....+++|++|++++|++++.+|..++.+++|++|++++|++++  .+|..+.. +++|++|++++|++.+.+
T Consensus       314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCG
T ss_pred             ccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCccc
Confidence            87432  12678999999999999999899999999999999999999986  56666665 999999999999999866


Q ss_pred             Ccc-cCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210          730 PPE-LCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG  808 (873)
Q Consensus       730 p~~-l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  808 (873)
                      |.. +..+++|+.|++++|++++.+|..+.                                   +.|+.||+++|+++ 
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----------------------------------~~L~~L~Ls~N~l~-  434 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP-----------------------------------PRIKVLDLHSNKIK-  434 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGGGSCC-----------------------------------TTCCEEECCSSCCC-
T ss_pred             ccchhccCccCCEEECcCCCCCcchhhhhc-----------------------------------ccCCEEECCCCccc-
Confidence            654 78899999999999999988776543                                   23589999999999 


Q ss_pred             cCChhhhcCCCCCeeeCCCCcCcccCCcc-ccCCCCCCeEeccCCccccccc
Q 045210          809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVN-MGAMKSVEALDFSSNRLQGEIP  859 (873)
Q Consensus       809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP  859 (873)
                      .+|.++..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus       435 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            89999999999999999999999 57776 8999999999999999998765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-44  Score=423.92  Aligned_cols=357  Identities=16%  Similarity=0.206  Sum_probs=274.1

Q ss_pred             CcccCCccccccCCCCCCCEEeCCCCccCcc-----------------cccccc--CCCCCCEEEccCccCCcccChhhh
Q 045210          406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGH-----------------IPLSLG--QLSSLRYLDVSTNNLNGTLSENHF  466 (873)
Q Consensus       406 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~  466 (873)
                      .|.+++ +|..++++++|++|++++|++++.                 +|..++  ++++|++|++++|.+.+.+|. .+
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FL  269 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HH
Confidence            466667 777777888888888888887764                 777777  777788888877777776664 45


Q ss_pred             hcccccceEEcCCCe-eeccccCCCCCCCccccEEeccccccCCCcchhhhcC------CcccEEEccCCCCCcccCh-h
Q 045210          467 ANLTKLVGFDASGNS-LVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ------NHLIYLDLSNSSISDTIPD-R  538 (873)
Q Consensus       467 ~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~------~~L~~L~l~~n~l~~~~p~-~  538 (873)
                      .++++|+.|++++|. +.+.                        .+|..+..+      ++|++|++++|++. .+|. .
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~------------------------~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~  324 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGE------------------------QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET  324 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHH------------------------HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred             hcCCCCCEEECcCCCCCccc------------------------cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence            566665555555554 3220                        244444443      56666666666665 5554 2


Q ss_pred             HHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCC-
Q 045210          539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMR-  617 (873)
Q Consensus       539 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~-  617 (873)
                      .+..+++|++|++++|++.|.+|.+..+++|++|++++                     |.++ .+|..    +..+++ 
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~---------------------N~l~-~lp~~----l~~l~~~  378 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY---------------------NQIT-EIPAN----FCGFTEQ  378 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS---------------------SEEE-ECCTT----SEEECTT
T ss_pred             hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC---------------------Cccc-cccHh----hhhhccc
Confidence            34445566666666666665555555555555555544                     4444 33333    444788 


Q ss_pred             CceEeccCCcccCCCChhhhccc--cCcEEEcCCCcCccCCccccc-------CCCCccEEEccCCcccccCCcccccCC
Q 045210          618 LQVLNLGNNTLSGEIPDCWMNWS--FLFFLHLGENDFTGNLPTSLG-------TLSSLQILHLRGNRFSGKIPVSLQNCT  688 (873)
Q Consensus       618 L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~  688 (873)
                      |++|++++|.++ .+|..+..++  +|+.|++++|++++.+|..+.       .+++|++|++++|++++..+..+..++
T Consensus       379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~  457 (636)
T 4eco_A          379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS  457 (636)
T ss_dssp             CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred             CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence            999999999999 7888887765  899999999999999999888       888999999999999944444556799


Q ss_pred             CCcEEEccCCeecccCChhHHhhcc-------cCcEEEccCCeeeeeCCcccC--CCCCCCEEeCCCCccccccChhhhh
Q 045210          689 ELRLFDISENEFVGNIPTWIGERLS-------GIILLSLRANQFHGFFPPELC--GLASLKILDLSSNNLTGVIPRCINN  759 (873)
Q Consensus       689 ~L~~L~Ls~n~l~~~ip~~~~~~l~-------~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~  759 (873)
                      +|++|++++|+++ .+|...+....       +|+.|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+++
T Consensus       458 ~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~  534 (636)
T 4eco_A          458 PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN  534 (636)
T ss_dssp             CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred             CCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc
Confidence            9999999999999 89987765333       9999999999999 7888887  99999999999999997 8998888


Q ss_pred             hhcCchhhcchhhhchhheeeecccceeccCCCCccceEEEC------CCCcccccCChhhhcCCCCCeeeCCCCcCccc
Q 045210          760 LAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDL------SANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR  833 (873)
Q Consensus       760 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l------s~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  833 (873)
                      +++|                                 +.|++      ++|++.+.+|..++++++|++|+|++|.+ +.
T Consensus       535 l~~L---------------------------------~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~  580 (636)
T 4eco_A          535 SSTL---------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK  580 (636)
T ss_dssp             CSSC---------------------------------CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred             CCCC---------------------------------CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence            7776                                 78999      56889999999999999999999999999 78


Q ss_pred             CCccccCCCCCCeEeccCCccc
Q 045210          834 IPVNMGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       834 ip~~l~~l~~L~~L~ls~N~l~  855 (873)
                      +|..+.  ++|+.||+++|++.
T Consensus       581 ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          581 VNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCSCCC--TTCCEEECCSCTTC
T ss_pred             cCHhHh--CcCCEEECcCCCCc
Confidence            999876  89999999999775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.4e-42  Score=406.08  Aligned_cols=540  Identities=22%  Similarity=0.215  Sum_probs=327.6

Q ss_pred             cEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEc
Q 045210          200 KHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDL  279 (873)
Q Consensus       200 ~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  279 (873)
                      ++.+.++-+++.+|...     .+++++|+|++|+++++.+.+|.++++|++|+|++|.++ +..+..+.++++|++|+|
T Consensus        34 ~~~~c~~~~l~~vP~~l-----p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~L  107 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL  107 (635)
T ss_dssp             TEEECTTSCCSSCCSSS-----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCCcCccCCCC-----CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEc
Confidence            34455555566554311     135666666666666666666666666666666666554 222233444455555555


Q ss_pred             cCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCc
Q 045210          280 STNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK  359 (873)
Q Consensus       280 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  359 (873)
                      ++|++++..+..                        |.++++|++|++++|++++..+..|+.+++|++|++++|.+++.
T Consensus       108 s~N~l~~l~~~~------------------------f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          108 TGNPIQSLALGA------------------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             TTCCCCEECGGG------------------------GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             cCCcCCCCCHHH------------------------hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence            555444333344                        44444444455544444443334445555555555555554432


Q ss_pred             -chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcc-c
Q 045210          360 -IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH-I  437 (873)
Q Consensus       360 -~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~  437 (873)
                       .|..++.+++|++|++++|++++..+..+..+...... ...++++.|.+....+..+ ....++.+++.+|..... .
T Consensus       164 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~-~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~  241 (635)
T 4g8a_A          164 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVM  241 (635)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC-CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHH
T ss_pred             CCchhhccchhhhhhcccCccccccccccccchhhhhhh-hhhhhcccCcccccCcccc-cchhhhhhhhhccccccccc
Confidence             34445555555555555555544433333322221111 4456666666655433322 233445556655544322 2


Q ss_pred             cccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhc
Q 045210          438 PLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLS  517 (873)
Q Consensus       438 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  517 (873)
                      +..+..+..++...+..+.......                                            +.......+..
T Consensus       242 ~~~~~~l~~l~~~~l~~~~~~~~~~--------------------------------------------l~~~~~~~~~~  277 (635)
T 4g8a_A          242 KTCIQGLAGLEVHRLVLGEFRNEGN--------------------------------------------LEKFDKSALEG  277 (635)
T ss_dssp             HHHHHTTTTCEEEEEEEECCTTSCC--------------------------------------------CSCCCTTTTGG
T ss_pred             chhhcCCcccccccccccccccccc--------------------------------------------ccccccccccc
Confidence            2334445555444443222111000                                            00000111111


Q ss_pred             CCcccEEEccCCCCCc--ccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEc
Q 045210          518 QNHLIYLDLSNSSISD--TIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDL  595 (873)
Q Consensus       518 ~~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l  595 (873)
                      ...+...++..+....  ......+....+++.+.+.++.+... +.+.....++.|++.+|.+.+..+.....++.+++
T Consensus       278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l  356 (635)
T 4g8a_A          278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF  356 (635)
T ss_dssp             GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred             ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence            1222222222111110  00111223345666666666665543 23444556777777777776665556677888888


Q ss_pred             cCccCcCcchhhhhhhcccCCCCceEeccCCccc--CCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccC
Q 045210          596 SSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS--GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRG  673 (873)
Q Consensus       596 ~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~  673 (873)
                      ..|......+      ...+++|+.+++++|.+.  +..+..+..+.+|+.+++..|.... .+..+..+++|+.+++.+
T Consensus       357 ~~n~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~  429 (635)
T 4g8a_A          357 TSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH  429 (635)
T ss_dssp             ESCCSCCBCC------CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred             ccccCCCCcc------cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence            7777654332      234778888999888875  3456777788889999999888774 455677889999999988


Q ss_pred             CcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeee-eeCCcccCCCCCCCEEeCCCCcccc
Q 045210          674 NRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFH-GFFPPELCGLASLKILDLSSNNLTG  751 (873)
Q Consensus       674 n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~  751 (873)
                      |......+ ..+..+++++.+++++|.+.+..|..+. .++.++.|++++|++. +.+|..+..+++|+.|||++|++++
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence            88776554 4577888999999999999876666555 4889999999998754 4577888899999999999999998


Q ss_pred             ccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc
Q 045210          752 VIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS  831 (873)
Q Consensus       752 ~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~  831 (873)
                      .+|..|+++++|                                 +.|+|++|++++..|..++++++|++|+|++|+++
T Consensus       509 l~~~~f~~l~~L---------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~  555 (635)
T 4g8a_A          509 LSPTAFNSLSSL---------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  555 (635)
T ss_dssp             ECTTTTTTCTTC---------------------------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred             cChHHHcCCCCC---------------------------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence            888888877776                                 78999999999888888999999999999999999


Q ss_pred             ccCCccccCC-CCCCeEeccCCccccc
Q 045210          832 GRIPVNMGAM-KSVEALDFSSNRLQGE  857 (873)
Q Consensus       832 ~~ip~~l~~l-~~L~~L~ls~N~l~g~  857 (873)
                      +..|..+..+ ++|+.|++++|+++..
T Consensus       556 ~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          556 TSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             BCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999998887 6899999999998753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4e-42  Score=406.40  Aligned_cols=517  Identities=21%  Similarity=0.202  Sum_probs=340.5

Q ss_pred             CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210          121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK  200 (873)
Q Consensus       121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~  200 (873)
                      +++++|||++|+++.. .+..|+++++|++|+|++|.+++..|.+|+++++|++|+|++|+++.++..            
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~------------  118 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG------------  118 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG------------
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH------------
Confidence            3678888888888864 456788888888888888888877777788888888888888877766554            


Q ss_pred             EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210          201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS  280 (873)
Q Consensus       201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  280 (873)
                                       .+.++++|++|++++|+++++.+..|+++++|++|++++|.+.....+..+..+++|++|+++
T Consensus       119 -----------------~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          119 -----------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             -----------------GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             -----------------HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence                             234555666666666666666666777777778888877777645566677777777777777


Q ss_pred             CCcCCCCChhhhcCCCCC----CEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCc-cCcccccCCCCCCEEeCCCCc
Q 045210          281 TNNFQGAVPDAIQNSTSL----QHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLSFNR  355 (873)
Q Consensus       281 ~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~  355 (873)
                      +|++++..+..+..+.++    ..++++.|.+....+. ......++.+++.+|.... ..+..+..+..++...+..+.
T Consensus       182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  260 (635)
T 4g8a_A          182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  260 (635)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             CccccccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccc
Confidence            777776666665544433    3567777776643333 3333455666666665442 223344555555555443221


Q ss_pred             C------CCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCC
Q 045210          356 L------ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLS  429 (873)
Q Consensus       356 l------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  429 (873)
                      .      .......+.....+....+..+....                          .....+..+..+.+++.+++.
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~--------------------------~~~~~~~~~~~~~~l~~l~~~  314 (635)
T 4g8a_A          261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY--------------------------YLDGIIDLFNCLTNVSSFSLV  314 (635)
T ss_dssp             CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS--------------------------CEEECTTTTGGGTTCSEEEEE
T ss_pred             cccccccccccccccccccchhhhhhhhhhhcc--------------------------cccchhhhhhhhccccccccc
Confidence            1      11112222222222222222211110                          001122234445666677766


Q ss_pred             CCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCC
Q 045210          430 FNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGP  509 (873)
Q Consensus       430 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  509 (873)
                      ++.+....  .+.....++.|++.+|.+.+. +.   ..+..++.+.+..|....                         
T Consensus       315 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~---~~l~~L~~l~l~~n~~~~-------------------------  363 (635)
T 4g8a_A          315 SVTIERVK--DFSYNFGWQHLELVNCKFGQF-PT---LKLKSLKRLTFTSNKGGN-------------------------  363 (635)
T ss_dssp             SCEEEECG--GGGSCCCCSEEEEESCEESSC-CC---CBCTTCCEEEEESCCSCC-------------------------
T ss_pred             cccccccc--ccccchhhhhhhcccccccCc-Cc---ccchhhhhcccccccCCC-------------------------
Confidence            66655322  244556677777777766532 21   234445555554443221                         


Q ss_pred             CcchhhhcCCcccEEEccCCCCCcc--cChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCC
Q 045210          510 QFPQWLLSQNHLIYLDLSNSSISDT--IPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP  587 (873)
Q Consensus       510 ~~~~~l~~~~~L~~L~l~~n~l~~~--~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  587 (873)
                        +.....+++|+.+++++|.+...  .+. ....+.+|+++++..+......+.+..+++|+.+++.++......+   
T Consensus       364 --~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---  437 (635)
T 4g8a_A          364 --AFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE---  437 (635)
T ss_dssp             --BCCCCBCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS---
T ss_pred             --Ccccccccccccchhhcccccccccccc-chhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc---
Confidence              11122455667777777666432  222 2334567788888877776665566666666666666655443222   


Q ss_pred             CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCc-cCCcccccCCCCc
Q 045210          588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFT-GNLPTSLGTLSSL  666 (873)
Q Consensus       588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L  666 (873)
                                        ..   .+..+++++.++++.|.+.+..+..+..+++|+.|++++|++. +..|..+..+++|
T Consensus       438 ------------------~~---~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          438 ------------------FS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             ------------------SC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             ------------------cc---ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence                              11   2344788899999999999888889999999999999999854 4577889999999


Q ss_pred             cEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCC-CCCCEEeCC
Q 045210          667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGL-ASLKILDLS  745 (873)
Q Consensus       667 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls  745 (873)
                      ++|+|++|++++..|..|.++++|++|+|++|++++..|..+. .+++|++|++++|++++..|..+..+ ++|+.|+++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~  575 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  575 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence            9999999999999999999999999999999999965555554 59999999999999999999999988 789999999


Q ss_pred             CCcccccc
Q 045210          746 SNNLTGVI  753 (873)
Q Consensus       746 ~N~l~~~i  753 (873)
                      +|++++..
T Consensus       576 ~Np~~C~C  583 (635)
T 4g8a_A          576 QNDFACTC  583 (635)
T ss_dssp             TCCBCCSG
T ss_pred             CCCCcccC
Confidence            99998654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=400.12  Aligned_cols=455  Identities=19%  Similarity=0.209  Sum_probs=313.2

Q ss_pred             EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210          201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS  280 (873)
Q Consensus       201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  280 (873)
                      ++++++|.++.++..   +.  ++|++|++++|.++++.+..|.++++|++|++++|.++ +..+..+.++++|++|+++
T Consensus         4 ~l~ls~n~l~~ip~~---~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKD---LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             EEECTTSCCSSCCCS---CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECC
T ss_pred             eEecCCCCccccccc---cc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecC
Confidence            444555555444321   11  56777777777777776677777777777777777775 4446667777777777777


Q ss_pred             CCcCCCCChhhhcCCCCCCEEECCCCCCCC-CCchhhhcCCCcCEEEccCCcCCccCcccccCCCCC--CEEeCCCCcC-
Q 045210          281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI--KSLDLSFNRL-  356 (873)
Q Consensus       281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l-  356 (873)
                      +|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..++.+++|  ++|++++|.+ 
T Consensus        78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred             CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence            77776 45544  67777777777777765 356677777777777777777664   245556666  7777777766 


Q ss_pred             -CCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccc-cccCCCCCCCEEeCCCCc--
Q 045210          357 -ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT-NQIGNFKNLDSLDLSFNN--  432 (873)
Q Consensus       357 -~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~--  432 (873)
                       .+..|..+..+..                            ....+++++|.+.+.++ ..+..+++|+.+++++|.  
T Consensus       152 ~~~~~~~~l~~l~~----------------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  203 (520)
T 2z7x_B          152 GEKEDPEGLQDFNT----------------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED  203 (520)
T ss_dssp             TSSCCTTTTTTCCE----------------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred             cccccccccccccc----------------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence             5555555544431                            13345666666665443 345678888888888876  


Q ss_pred             -----cCccccccccCCCCCCEEEccCccCCcccChhhhh--cccccceEEcCCCeeeccccCCCCCCCccccEEecccc
Q 045210          433 -----ISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFA--NLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSC  505 (873)
Q Consensus       433 -----l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  505 (873)
                           +.+.+| .++.+++|+.|++++|.+.+........  ..++|+.+++++|.                        
T Consensus       204 ~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~------------------------  258 (520)
T 2z7x_B          204 NKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK------------------------  258 (520)
T ss_dssp             TTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE------------------------
T ss_pred             cccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc------------------------
Confidence                 565555 6778888888888888776432221111  12344444444443                        


Q ss_pred             ccCCCcchhh-----hcCCcccEEEccCCCCCcccCh-hHHhcC--CCCcEEeccCcccccccCCccccCCCCeEeCCCC
Q 045210          506 FIGPQFPQWL-----LSQNHLIYLDLSNSSISDTIPD-RLVKSL--SQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSN  577 (873)
Q Consensus       506 ~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~p~-~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  577 (873)
                       +.+.+|.++     ..+++|+.+++++|.+  .+|. .+...+  .+|+.|++++|.+.... ....            
T Consensus       259 -l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~------------  322 (520)
T 2z7x_B          259 -LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSK------------  322 (520)
T ss_dssp             -EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSS------------
T ss_pred             -ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-chhh------------
Confidence             333455555     6677777777777777  5553 322221  35677777766654321 1123            


Q ss_pred             CCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccC--CCChhhhccccCcEEEcCCCcCccC
Q 045210          578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG--EIPDCWMNWSFLFFLHLGENDFTGN  655 (873)
Q Consensus       578 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~  655 (873)
                               +++|++|++++|.+++.+|..    +..+++|++|++++|++++  .+|..+..+++|++|++++|++++.
T Consensus       323 ---------l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  389 (520)
T 2z7x_B          323 ---------ISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD  389 (520)
T ss_dssp             ---------CCCCCEEECCSSCCCTTTTTT----CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred             ---------CCcccEEEeECCccChhhhhh----hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence                     445566666666666555543    4458889999999999986  5667889999999999999999986


Q ss_pred             Cccc-ccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcc-c
Q 045210          656 LPTS-LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPE-L  733 (873)
Q Consensus       656 ~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~-l  733 (873)
                      +|.. +..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|.+++. +++|++|++++|++++ +|.. +
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~-l~~L~~L~L~~N~l~~-l~~~~~  464 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK-LEALQELNVASNQLKS-VPDGIF  464 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCCC-CCTTTT
T ss_pred             cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc-CCCCCEEECCCCcCCc-cCHHHh
Confidence            7754 78899999999999999988887765  79999999999999 89999884 9999999999999994 5655 8


Q ss_pred             CCCCCCCEEeCCCCccccccC
Q 045210          734 CGLASLKILDLSSNNLTGVIP  754 (873)
Q Consensus       734 ~~l~~L~~L~Ls~N~l~~~ip  754 (873)
                      ..+++|+.|++++|++++..+
T Consensus       465 ~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          465 DRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCCcccEEECcCCCCcccCC
Confidence            899999999999999998765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.1e-43  Score=413.46  Aligned_cols=393  Identities=18%  Similarity=0.237  Sum_probs=235.9

Q ss_pred             CCCCCCCchhhhcCCCcCEEEccCCcCCc-----------------cCccccc--CCCCCCEEeCCCCcCCCcchhhhhc
Q 045210          306 NHFSSSVPDWFNKFIDLEYLSLSYNELQG-----------------SIPGSLG--NLTSIKSLDLSFNRLESKIPRAFKR  366 (873)
Q Consensus       306 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~  366 (873)
                      |.+++ +|..++++++|++|++++|.+++                 .+|..++  ++++|++|++++|.+.+.+|..+++
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            67776 88889999999999999999987                 3888887  9999999999999999999999999


Q ss_pred             CCCCCEEEccCCc-Ccc-hhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccc--ccc
Q 045210          367 LRHLRSVNLSGNK-LSQ-EISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPL--SLG  442 (873)
Q Consensus       367 l~~L~~L~L~~n~-l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~  442 (873)
                      +++|+.|++++|+ +++ .+|..+..+.                      ..+..+++|++|++++|+++ .+|.  .++
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~----------------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~  570 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLA----------------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQ  570 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHH----------------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhh----------------------hcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence            9999999999998 887 6665544322                      01233445555555555555 4454  455


Q ss_pred             CCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCc-c
Q 045210          443 QLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNH-L  521 (873)
Q Consensus       443 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L  521 (873)
                      ++++|++|++++|+++ .+|  .+..+++|+.|++++|.+.                          .+|.++..+++ |
T Consensus       571 ~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~--------------------------~lp~~l~~l~~~L  621 (876)
T 4ecn_A          571 KMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE--------------------------EIPEDFCAFTDQV  621 (876)
T ss_dssp             TCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS--------------------------CCCTTSCEECTTC
T ss_pred             cCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc--------------------------cchHHHhhccccC
Confidence            5555555555555544 333  2333333333333222211                          11222222233 3


Q ss_pred             cEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCcccc--CCCCeEeCCCCCCCCCCCCCCCCCcEEEccCcc
Q 045210          522 IYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDA--AQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF  599 (873)
Q Consensus       522 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  599 (873)
                      +.|++++|.+. .+|.                        .+...  ++|+.|++++|++.+.+|..+..+         
T Consensus       622 ~~L~Ls~N~L~-~lp~------------------------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l---------  667 (876)
T 4ecn_A          622 EGLGFSHNKLK-YIPN------------------------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSM---------  667 (876)
T ss_dssp             CEEECCSSCCC-SCCS------------------------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCT---------
T ss_pred             CEEECcCCCCC-cCch------------------------hhhccccCCCCEEECcCCcCCCccccchhhh---------
Confidence            33333333332 2221                        12111  124444444444433332211000         


Q ss_pred             CcCcchhhhhhhcccCCCCceEeccCCcccCCCChhh-hccccCcEEEcCCCcCccCCcccccC--------CCCccEEE
Q 045210          600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW-MNWSFLFFLHLGENDFTGNLPTSLGT--------LSSLQILH  670 (873)
Q Consensus       600 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~p~~l~~--------l~~L~~L~  670 (873)
                                 ....+++|+.|++++|+++ .+|..+ ..+++|+.|++++|++. .+|..+..        +++|+.|+
T Consensus       668 -----------~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~  734 (876)
T 4ecn_A          668 -----------DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTID  734 (876)
T ss_dssp             -----------TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred             -----------ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEE
Confidence                       0011345667777777766 444443 36677777777777776 45544332        23677777


Q ss_pred             ccCCcccccCCcccc--cCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210          671 LRGNRFSGKIPVSLQ--NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN  748 (873)
Q Consensus       671 L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  748 (873)
                      |++|+++ .+|..+.  .+++|+.|+|++|++++ +|..++. +++|+.|++++|+                  ++++|.
T Consensus       735 Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~-L~~L~~L~Ls~N~------------------~ls~N~  793 (876)
T 4ecn_A          735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN-SSQLKAFGIRHQR------------------DAEGNR  793 (876)
T ss_dssp             CCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-CTTCCEEECCCCB------------------CTTCCB
T ss_pred             CCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc-CCCCCEEECCCCC------------------Cccccc
Confidence            7777666 5666665  66677777777777664 6666654 6666666666654                  456677


Q ss_pred             cccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCC
Q 045210          749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN  828 (873)
Q Consensus       749 l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N  828 (873)
                      +.+.+|..++++++|                                 +.|+|++|++ +.||..+.  ++|+.|+|++|
T Consensus       794 l~~~ip~~l~~L~~L---------------------------------~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N  837 (876)
T 4ecn_A          794 ILRQWPTGITTCPSL---------------------------------IQLQIGSNDI-RKVDEKLT--PQLYILDIADN  837 (876)
T ss_dssp             CCCCCCTTGGGCSSC---------------------------------CEEECCSSCC-CBCCSCCC--SSSCEEECCSC
T ss_pred             ccccChHHHhcCCCC---------------------------------CEEECCCCCC-CccCHhhc--CCCCEEECCCC
Confidence            777777777766655                                 6777777777 57777655  57778888888


Q ss_pred             cCcccCCccccCCCCCCeEeccCCccc
Q 045210          829 FFSGRIPVNMGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       829 ~l~~~ip~~l~~l~~L~~L~ls~N~l~  855 (873)
                      ++...-+..+.....+..+.+++|++.
T Consensus       838 ~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          838 PNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             TTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCCccChHHccccccchheeecCCCcc
Confidence            777665666655555666667776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-41  Score=391.01  Aligned_cols=462  Identities=19%  Similarity=0.190  Sum_probs=289.3

Q ss_pred             CCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeC
Q 045210          272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL  351 (873)
Q Consensus       272 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  351 (873)
                      ...+++++++|++++ +|..+.  ++|++|++++|.+++..|..++++++|++|++++|.+++..|..|+.+++|++|++
T Consensus        31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            344667777777663 554443  56667777777666655566666666666666666666655666666666666666


Q ss_pred             CCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC-ccccccCCCCCCCEEeCCC
Q 045210          352 SFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG-LLTNQIGNFKNLDSLDLSF  430 (873)
Q Consensus       352 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~  430 (873)
                      ++|+++ .+|..  .+++                             |++|++++|.+.+ .+|..++.+++|++|++++
T Consensus       108 s~N~l~-~lp~~--~l~~-----------------------------L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          108 SHNRLQ-NISCC--PMAS-----------------------------LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             TTSCCC-EECSC--CCTT-----------------------------CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC
T ss_pred             CCCcCC-ccCcc--cccc-----------------------------CCEEECCCCCccccCchHhhcccCcccEEecCC
Confidence            666665 23332  3333                             5555555555555 2356677888888888888


Q ss_pred             CccCccccccccCCCCC--CEEEccCccC--CcccChhhhhcccc-cceEEcCCCeeeccccCCCCCCCccccEEecccc
Q 045210          431 NNISGHIPLSLGQLSSL--RYLDVSTNNL--NGTLSENHFANLTK-LVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSC  505 (873)
Q Consensus       431 n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  505 (873)
                      |++++.   .+..+++|  ++|++++|.+  ++..+. .+..+.. .-.+++++|                         
T Consensus       156 n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n-------------------------  206 (562)
T 3a79_B          156 AKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPN-------------------------  206 (562)
T ss_dssp             SBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEEEEEECSS-------------------------
T ss_pred             CccccC---chhhhhhceeeEEEeecccccccccCcc-cccccCcceEEEEecCc-------------------------
Confidence            887753   34444444  8888888877  544443 2333220 001222222                         


Q ss_pred             ccCCCcc-hhhhcCCcccEEEccCCCCCc-ccCh--hHHhcCCCCcEEeccCccccccc----CCccccCCCCeEeCCCC
Q 045210          506 FIGPQFP-QWLLSQNHLIYLDLSNSSISD-TIPD--RLVKSLSQINYLNLSYNQIFGQI----PDLNDAAQLETLDLSSN  577 (873)
Q Consensus       506 ~~~~~~~-~~l~~~~~L~~L~l~~n~l~~-~~p~--~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~L~~L~l~~n  577 (873)
                      .+.+.++ ..+..+++|+.+++++|+..- .++.  ..+..+++|+.+++.++.+.+..    +.....           
T Consensus       207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~-----------  275 (562)
T 3a79_B          207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP-----------  275 (562)
T ss_dssp             SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT-----------
T ss_pred             cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc-----------
Confidence            2222222 233445666667766664210 0000  12334455566655555544311    111112           


Q ss_pred             CCCCCCCCCCCCCcEEEccCccCcCcchhhhhhh-cccCCCCceEeccCCcccCCCC-hhhhcc---ccCcEEEcCCCcC
Q 045210          578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNE-MNNSMRLQVLNLGNNTLSGEIP-DCWMNW---SFLFFLHLGENDF  652 (873)
Q Consensus       578 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l---~~L~~L~l~~n~l  652 (873)
                                .+|++|++++|.++|.+|..+... ..+++.|+.++++.+.+  .+| ..+..+   .+|+.|++++|.+
T Consensus       276 ----------~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~  343 (562)
T 3a79_B          276 ----------RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPF  343 (562)
T ss_dssp             ----------SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred             ----------ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCc
Confidence                      245555555555555554432110 12344555555555555  344 223222   5688888888877


Q ss_pred             ccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecc--cCChhHHhhcccCcEEEccCCeeeeeCC
Q 045210          653 TGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG--NIPTWIGERLSGIILLSLRANQFHGFFP  730 (873)
Q Consensus       653 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~L~~n~l~~~~p  730 (873)
                      ....  ....+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+. .+++|+.|++++|++++.+|
T Consensus       344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~  420 (562)
T 3a79_B          344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAY  420 (562)
T ss_dssp             CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCS
T ss_pred             cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccC
Confidence            5321  12577888888888888888888888888888888888888874  2233444 48888899999998888565


Q ss_pred             c-ccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCccccc
Q 045210          731 P-ELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE  809 (873)
Q Consensus       731 ~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  809 (873)
                      . .+..+++|+.|++++|++++.+|..+.                                   +.|+.||+++|+++ .
T Consensus       421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----------------------------------~~L~~L~L~~N~l~-~  464 (562)
T 3a79_B          421 DRTCAWAESILVLNLSSNMLTGSVFRCLP-----------------------------------PKVKVLDLHNNRIM-S  464 (562)
T ss_dssp             SCCCCCCTTCCEEECCSSCCCGGGGSSCC-----------------------------------TTCSEEECCSSCCC-C
T ss_pred             hhhhcCcccCCEEECCCCCCCcchhhhhc-----------------------------------CcCCEEECCCCcCc-c
Confidence            5 477889999999999999887776542                                   23588999999998 7


Q ss_pred             CChhhhcCCCCCeeeCCCCcCcccCCcc-ccCCCCCCeEeccCCcccccccc
Q 045210          810 IPSQVTNLVGLQTLKLSHNFFSGRIPVN-MGAMKSVEALDFSSNRLQGEIPK  860 (873)
Q Consensus       810 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  860 (873)
                      +|..+..+++|++|++++|+++ .+|.. ++.+++|+.|++++|++.+..|.
T Consensus       465 ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          465 IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            8988889999999999999999 57766 88999999999999999987663

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.9e-41  Score=387.49  Aligned_cols=468  Identities=23%  Similarity=0.255  Sum_probs=288.5

Q ss_pred             ccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEcc
Q 045210          249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS  328 (873)
Q Consensus       249 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  328 (873)
                      .+++++++|.++  .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|+.+++|++|+++
T Consensus        33 ~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           33 ESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            356666666654  2444332  567777777777776666677777777777777777776667777777777777777


Q ss_pred             CCcCCccCcccccCCCCCCEEeCCCCcCCCc-chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCc
Q 045210          329 YNELQGSIPGSLGNLTSIKSLDLSFNRLESK-IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN  407 (873)
Q Consensus       329 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  407 (873)
                      +|.++ .+|..  .+++|++|++++|++++. +|..++++++|++|++++|.+++....   .+...   .|+.|++++|
T Consensus       109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~L---~L~~L~L~~n  179 (562)
T 3a79_B          109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL---PVAHL---HLSCILLDLV  179 (562)
T ss_dssp             TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG---GGTTS---CEEEEEEEES
T ss_pred             CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh---hhhhc---eeeEEEeecc
Confidence            77776 45554  677777777777777653 356777777777777777766542111   11110   1366666666


Q ss_pred             cc--CCccccccCCCC--CCCEEeCCCCccCccccc-cccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCee
Q 045210          408 TL--FGLLTNQIGNFK--NLDSLDLSFNNISGHIPL-SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL  482 (873)
Q Consensus       408 ~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~  482 (873)
                      .+  ++..|..+..+.  .+ .+++++|.+.+.++. .+..+++|+.+++++|......                     
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~---------------------  237 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR---------------------  237 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH---------------------
T ss_pred             cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccch---------------------
Confidence            66  555555554433  12 335555555443332 2344555555555554311000                     


Q ss_pred             eccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHH--hcCCCCcEEeccCccccccc
Q 045210          483 VLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV--KSLSQINYLNLSYNQIFGQI  560 (873)
Q Consensus       483 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~l~~n~~~~~~  560 (873)
                                               .......+..+++|+.++++++.+.+.......  ...++|++|++++|.+.+.+
T Consensus       238 -------------------------l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i  292 (562)
T 3a79_B          238 -------------------------LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI  292 (562)
T ss_dssp             -------------------------HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred             -------------------------HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc
Confidence                                     000112234444555555554444332111111  11237777777777777666


Q ss_pred             C-Cccc--cCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhh
Q 045210          561 P-DLND--AAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM  637 (873)
Q Consensus       561 ~-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~  637 (873)
                      | .+..  .++++                  .|+.+++..+.+  .+|......+....+|++|++++|.+....  ...
T Consensus       293 p~~~~~~~~~~L~------------------~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~  350 (562)
T 3a79_B          293 DREEFTYSETALK------------------SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPP  350 (562)
T ss_dssp             CCCCCCCCSCSCC------------------EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCS
T ss_pred             cchhhhcccccch------------------heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--Ccc
Confidence            5 2211  11222                  222233333333  233221111212356788888888775322  125


Q ss_pred             ccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccc--cCCcccccCCCCcEEEccCCeecccCChhHHhhcccC
Q 045210          638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG--KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI  715 (873)
Q Consensus       638 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L  715 (873)
                      .+++|++|++++|++++.+|..++++++|++|++++|++++  .+|..+..+++|++|++++|++++.+|...+..+++|
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            67788888888888887778888888888888888888876  3346677888888888888888876777655557888


Q ss_pred             cEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCcc
Q 045210          716 ILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYY  795 (873)
Q Consensus       716 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (873)
                      +.|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+..+++|                                
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L--------------------------------  475 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL--------------------------------  475 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC--------------------------------
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC--------------------------------
Confidence            8888888888877766554  68888888888888 677766655554                                


Q ss_pred             ceEEECCCCcccccCChh-hhcCCCCCeeeCCCCcCcccCC
Q 045210          796 LKVLDLSANYFSGEIPSQ-VTNLVGLQTLKLSHNFFSGRIP  835 (873)
Q Consensus       796 L~~L~ls~n~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip  835 (873)
                       +.||+++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus       476 -~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          476 -QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             -SEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             -CEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence             78888888888 57766 8888888888888888887655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1e-39  Score=347.45  Aligned_cols=277  Identities=31%  Similarity=0.503  Sum_probs=179.9

Q ss_pred             cCCHHHHHHHHHhhhcCCCCCCCcCCCccCCCCCCcc--ceeeEecCCC--CcEEEEecCCCCCCCCCchhhhhccccce
Q 045210           34 GCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCK--WYGVVCDNIT--GHVLELRLRNPSRDDGSPAEYEAYERSKI  109 (873)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~~  109 (873)
                      .|.++|++||++||+++.+|. .+.+|. . +.+||.  |.||+|+...  ++|+.+++++.                .+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~-~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~----------------~l   62 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWL-P-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL----------------NL   62 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC-T-TSCTTTTCSTTEEECCSSSCCCEEEEEEECC----------------CC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCC-C-CCCCCcCCCcceEeCCCCCCceEEEEECCCC----------------Cc
Confidence            599999999999999998886 789997 3 678998  9999998655  89999999986                77


Q ss_pred             ee--ecccCccCCCCCCeecCCC-CCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCc
Q 045210          110 VG--KINPSLLGLKHLIHLDLSY-NDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLY  186 (873)
Q Consensus       110 ~g--~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~  186 (873)
                      .|  .+|+.++++++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..++++++|++|++++|.++...
T Consensus        63 ~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  141 (313)
T 1ogq_A           63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             cCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC
Confidence            78  8899999999999999995 888876 8999999999999999999999889998888888888888888765322


Q ss_pred             cCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCC-CccEEEcCCCCCCCCchh
Q 045210          187 VEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFS-SLVTLDISDNQFADSSIV  265 (873)
Q Consensus       187 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~  265 (873)
                      +.                             .+..+++|++|++++|.+++..|..+.+++ +|++|++++|.+. +.++
T Consensus       142 p~-----------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~  191 (313)
T 1ogq_A          142 PP-----------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIP  191 (313)
T ss_dssp             CG-----------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECC
T ss_pred             Ch-----------------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-ccCC
Confidence            11                             223334444444444444444444444444 4444444444443 3334


Q ss_pred             HhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCC
Q 045210          266 NQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS  345 (873)
Q Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  345 (873)
                      ..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..++.+++
T Consensus       192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  269 (313)
T 1ogq_A          192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence            4444443 44444444444444444444444444444444444433332 344444444444444444444444444444


Q ss_pred             CCEEeCCCCcCCCcchh
Q 045210          346 IKSLDLSFNRLESKIPR  362 (873)
Q Consensus       346 L~~L~L~~n~l~~~~~~  362 (873)
                      |++|++++|++++.+|.
T Consensus       270 L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          270 LHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCEEECCSSEEEEECCC
T ss_pred             CCEEECcCCcccccCCC
Confidence            44444444444444433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.3e-38  Score=353.75  Aligned_cols=155  Identities=25%  Similarity=0.188  Sum_probs=61.6

Q ss_pred             CCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEE
Q 045210          295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVN  374 (873)
Q Consensus       295 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  374 (873)
                      .++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++|+.+++.+|.           ..++++|+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEEE
Confidence            35566666666666 4666666666666666666666666666666666554332222211           02333444


Q ss_pred             ccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccC
Q 045210          375 LSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVST  454 (873)
Q Consensus       375 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  454 (873)
                      +++|.+++.+.        .. +.|++|++++|.+++ +|..   +++|++|++++|++++ +|..   .++|++|++++
T Consensus        78 l~~~~l~~lp~--------~~-~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~  140 (454)
T 1jl5_A           78 LNNLGLSSLPE--------LP-PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSN  140 (454)
T ss_dssp             CTTSCCSCCCS--------CC-TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCS
T ss_pred             ecCCccccCCC--------Cc-CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcC
Confidence            44443333111        00 115555555555554 3321   2556666666665553 2211   14566666666


Q ss_pred             ccCCcccChhhhhcccccceEEcCCCe
Q 045210          455 NNLNGTLSENHFANLTKLVGFDASGNS  481 (873)
Q Consensus       455 n~l~~~~~~~~~~~l~~L~~L~l~~n~  481 (873)
                      |++++ +|  .+.++++|+.+++++|.
T Consensus       141 n~l~~-lp--~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A          141 NQLEK-LP--ELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             SCCSS-CC--CCTTCTTCCEEECCSSC
T ss_pred             CCCCC-Cc--ccCCCCCCCEEECCCCc
Confidence            65553 43  24444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4e-38  Score=351.87  Aligned_cols=425  Identities=22%  Similarity=0.290  Sum_probs=179.8

Q ss_pred             CCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEE
Q 045210          246 FSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYL  325 (873)
Q Consensus       246 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  325 (873)
                      .+.|++|++++|.+  +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++.+|.           ..++++|
T Consensus        10 ~~~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L   76 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHEL   76 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEE
T ss_pred             cccchhhhcccCch--hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEE
Confidence            46777777777777  5677777777777777777777777777777766665333332221           0234555


Q ss_pred             EccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEcc
Q 045210          326 SLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS  405 (873)
Q Consensus       326 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  405 (873)
                      ++++|.+++ +|..   .++|++|++++|.+++ +|..   +++|++|++++|.+++...        .. +.|++|+++
T Consensus        77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~--------~~-~~L~~L~L~  139 (454)
T 1jl5_A           77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD--------LP-PLLEYLGVS  139 (454)
T ss_dssp             ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS--------CC-TTCCEEECC
T ss_pred             EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC--------CC-CCCCEEECc
Confidence            555555553 2221   2455555555555554 3321   2445555555554443211        00 126666666


Q ss_pred             CcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeecc
Q 045210          406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLK  485 (873)
Q Consensus       406 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  485 (873)
                      +|.+++ +| .++.+++|++|++++|++++ +|..+   ++|++|++++|++++ ++  .+.++++|+.+++++|     
T Consensus       140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N-----  205 (454)
T 1jl5_A          140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNN-----  205 (454)
T ss_dssp             SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSS-----
T ss_pred             CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCC-----
Confidence            666665 44 36666667777776666663 44332   366666666666653 33  2444444444444444     


Q ss_pred             ccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccc
Q 045210          486 VVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLND  565 (873)
Q Consensus       486 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  565 (873)
                                                                  ++.+ +|..    .++|++|++++|.+. .+|.+..
T Consensus       206 --------------------------------------------~l~~-l~~~----~~~L~~L~l~~n~l~-~lp~~~~  235 (454)
T 1jl5_A          206 --------------------------------------------SLKK-LPDL----PLSLESIVAGNNILE-ELPELQN  235 (454)
T ss_dssp             --------------------------------------------CCSS-CCCC----CTTCCEEECCSSCCS-SCCCCTT
T ss_pred             --------------------------------------------cCCc-CCCC----cCcccEEECcCCcCC-cccccCC
Confidence                                                        3332 2211    135555555555555 3444555


Q ss_pred             cCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEE
Q 045210          566 AAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFL  645 (873)
Q Consensus       566 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  645 (873)
                      +++|++|++++|++.+ +|..+++|++|++++|.+++ +|..       .++|++|++++|++++. |..   .++|+.|
T Consensus       236 l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~-l~~~-------~~~L~~L~ls~N~l~~l-~~~---~~~L~~L  302 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTD-LPEL-------PQSLTFLDVSENIFSGL-SEL---PPNLYYL  302 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSC-CCCC-------CTTCCEEECCSSCCSEE-SCC---CTTCCEE
T ss_pred             CCCCCEEECCCCcCCc-ccccccccCEEECCCCcccc-cCcc-------cCcCCEEECcCCccCcc-cCc---CCcCCEE
Confidence            6666666666666554 33344556666666665554 2221       24556666666655541 110   1455566


Q ss_pred             EcCCCcCccCCcccccCC-CCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCe
Q 045210          646 HLGENDFTGNLPTSLGTL-SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQ  724 (873)
Q Consensus       646 ~l~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~  724 (873)
                      ++++|++++ ++    .+ ++|++|++++|++++ +|..   +++|++|++++|+++ .+|.    .+++|++|++++|+
T Consensus       303 ~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          303 NASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNP  368 (454)
T ss_dssp             ECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSC
T ss_pred             ECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCC
Confidence            666665553 22    12 355666666666553 3432   355666666666655 4554    14555566666655


Q ss_pred             eee--eCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECC
Q 045210          725 FHG--FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLS  802 (873)
Q Consensus       725 l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls  802 (873)
                      +++  .+|..+..        ++.|.+.|.+|..                                    +++|+.||++
T Consensus       369 l~~l~~ip~~l~~--------L~~n~~~~~i~~~------------------------------------~~~L~~L~ls  404 (454)
T 1jl5_A          369 LREFPDIPESVED--------LRMNSHLAEVPEL------------------------------------PQNLKQLHVE  404 (454)
T ss_dssp             CSSCCCCCTTCCE--------EECCC------------------------------------------------------
T ss_pred             CCcCCCChHHHHh--------hhhcccccccccc------------------------------------cCcCCEEECC
Confidence            555  44443321        2234455555432                                    2345788888


Q ss_pred             CCcccc--cCChhhhcCCCCCeeeCCCCcCcccCCccccCC
Q 045210          803 ANYFSG--EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM  841 (873)
Q Consensus       803 ~n~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  841 (873)
                      +|++++  .+|.+      ++.|.+.+|.+.+.+|.+....
T Consensus       405 ~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          405 TNPLREFPDIPES------VEDLRMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             -----------------------------------------
T ss_pred             CCcCCccccchhh------HhheeCcCcccCCccccCHHHh
Confidence            888887  67754      4556788888888877665544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.8e-37  Score=346.86  Aligned_cols=376  Identities=19%  Similarity=0.222  Sum_probs=235.5

Q ss_pred             CCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCC-chhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEe
Q 045210          272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSV-PDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLD  350 (873)
Q Consensus       272 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  350 (873)
                      ++|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            34555555555555444555555555555555555544332 33445555555555555555544444555555555555


Q ss_pred             CCCCcCCCcchhh--hhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccc-cCCCCCCCEEe
Q 045210          351 LSFNRLESKIPRA--FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQ-IGNFKNLDSLD  427 (873)
Q Consensus       351 L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~  427 (873)
                      +++|.+++..+..  ++.+++                             |++|++++|.+.+..|.. +..+++|++|+
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~-----------------------------L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  160 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTS-----------------------------LEMLVLRDNNIKKIQPASFFLNMRRFHVLD  160 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTT-----------------------------CCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred             CCCCCCCccccCcccccCccc-----------------------------CCEEECCCCccCccCcccccCCCCcccEEe
Confidence            5555544433222  333332                             444444444444443333 45556666666


Q ss_pred             CCCCccCccccccccCC--CCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEecccc
Q 045210          428 LSFNNISGHIPLSLGQL--SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSC  505 (873)
Q Consensus       428 L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  505 (873)
                      +++|++++..+..+..+  .+|+.|++++|.+.+..+. .+.                                      
T Consensus       161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~-~~~--------------------------------------  201 (455)
T 3v47_A          161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY-WLG--------------------------------------  201 (455)
T ss_dssp             CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT-CTT--------------------------------------
T ss_pred             CCCCcccccChhhhhccccccccccccccCcccccchh-hcc--------------------------------------
Confidence            66666655555554443  4555555555554421111 000                                      


Q ss_pred             ccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcC--CCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCC
Q 045210          506 FIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSL--SQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPL  583 (873)
Q Consensus       506 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  583 (873)
                         ......+..+++|++|++++|++.+..|..+....  ++|+.|++++|...+......                   
T Consensus       202 ---~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------------  259 (455)
T 3v47_A          202 ---WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-------------------  259 (455)
T ss_dssp             ---HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC-------------------
T ss_pred             ---ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh-------------------
Confidence               00011123345677777777777766666555432  456666666665443211111                   


Q ss_pred             CCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCC
Q 045210          584 PLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTL  663 (873)
Q Consensus       584 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l  663 (873)
                                     .+.+..+..+..  ...++|+.|++++|.+++..|..+..+++|++|++++|++.+..|..+.++
T Consensus       260 ---------------~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  322 (455)
T 3v47_A          260 ---------------NFKDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL  322 (455)
T ss_dssp             ---------------SSCCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ---------------hhccCccccccc--ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc
Confidence                           111111111110  014678999999999998888999999999999999999998888899999


Q ss_pred             CCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEe
Q 045210          664 SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILD  743 (873)
Q Consensus       664 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  743 (873)
                      ++|++|++++|++++..|..+..+++|++|++++|++++..|..+.. +++|++|++++|++++..+..+..+++|+.|+
T Consensus       323 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALDTNQLKSVPDGIFDRLTSLQKIW  401 (455)
T ss_dssp             TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc-cccccEEECCCCccccCCHhHhccCCcccEEE
Confidence            99999999999999888899999999999999999999777877775 99999999999999987777788999999999


Q ss_pred             CCCCccccccCh
Q 045210          744 LSSNNLTGVIPR  755 (873)
Q Consensus       744 Ls~N~l~~~ip~  755 (873)
                      +++|++++.+|.
T Consensus       402 l~~N~l~~~~~~  413 (455)
T 3v47_A          402 LHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCBCCCTTT
T ss_pred             ccCCCcccCCCc
Confidence            999999999883

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-36  Score=343.24  Aligned_cols=371  Identities=20%  Similarity=0.273  Sum_probs=200.9

Q ss_pred             CCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEE
Q 045210          421 KNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAI  500 (873)
Q Consensus       421 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  500 (873)
                      ++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...|.++++|++|++++|.+... .+..+....+|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEE
Confidence            34445555555444444444444455555555554444444433444444444444444433211 11111111222222


Q ss_pred             eccccccCCCcch--hhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCC
Q 045210          501 GLSSCFIGPQFPQ--WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSN  577 (873)
Q Consensus       501 ~l~~~~~~~~~~~--~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n  577 (873)
                      ++++|.+.+..+.  ++..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+..+ .+..+.          
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~----------  178 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ----------  178 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT----------
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc----------
Confidence            2222222222222  244555555555555555554454444455555555555555554444 222220          


Q ss_pred             CCCCCCCCCCCCCcEEEccCccCcCcchhhh----hhhcccCCCCceEeccCCcccCCCChhhhcc---ccCcEEEcCCC
Q 045210          578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFL----CNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW---SFLFFLHLGEN  650 (873)
Q Consensus       578 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~l~~n  650 (873)
                               ..+++.+++++|.+.+..+..+    +..+..+++|++|++++|++++..|..+...   ++|+.|++++|
T Consensus       179 ---------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          179 ---------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             ---------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ---------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence                     1233444444444433222111    1112234556666666666665555555443   55666666666


Q ss_pred             cCccCCcccccCCCCccEEEccCCcccccCCcccc--cCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210          651 DFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQ--NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF  728 (873)
Q Consensus       651 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  728 (873)
                      ...+...              ..+.+.+..+..+.  ..++|++|++++|.+++.+|..+.. +++|+.|++++|++.+.
T Consensus       250 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          250 YNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             TTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEE
T ss_pred             ccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc-CCCCCEEECCCCccccc
Confidence            5443211              01111111112222  2356777777777777666666654 77777777777777777


Q ss_pred             CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210          729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG  808 (873)
Q Consensus       729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  808 (873)
                      .|..+..+++|+.|++++|.+++..|..++.+++|                                 +.||+++|++++
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L~Ls~N~l~~  361 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL---------------------------------EVLDLSYNHIRA  361 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC---------------------------------CEEECCSSCCCE
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccC---------------------------------CEEECCCCcccc
Confidence            77777777888888888888776667666665554                                 678888888877


Q ss_pred             cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccc
Q 045210          809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP  859 (873)
Q Consensus       809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  859 (873)
                      ..|..++.+++|++|++++|++++..+..++.+++|+.|++++|++++.+|
T Consensus       362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            777778888888888888888886655666778888888888888887776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.9e-35  Score=328.97  Aligned_cols=90  Identities=13%  Similarity=0.087  Sum_probs=51.9

Q ss_pred             CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210          616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI  695 (873)
Q Consensus       616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  695 (873)
                      ++|++|++++|++++. +  +..+++|+.|++++|++++        ++.|+.|++++|.+.|.     ..+..|+.+++
T Consensus       318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l  381 (457)
T 3bz5_A          318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETL  381 (457)
T ss_dssp             TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred             ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcccc
Confidence            4566666666666652 2  5666666666666666664        23455556666666654     23445666677


Q ss_pred             cCCeecccCChhHHhhcccCcEEEcc
Q 045210          696 SENEFVGNIPTWIGERLSGIILLSLR  721 (873)
Q Consensus       696 s~n~l~~~ip~~~~~~l~~L~~L~L~  721 (873)
                      ++|+++|.+|..+.....++....-.
T Consensus       382 ~~N~l~g~ip~~~~~~~~~~~~~~~~  407 (457)
T 3bz5_A          382 TNNSLTIAVSPDLLDQFGNPMNIEPG  407 (457)
T ss_dssp             BTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred             ccCcEEEEcChhHhcccCceeeccCC
Confidence            77777777766654433444443333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.8e-35  Score=325.53  Aligned_cols=273  Identities=22%  Similarity=0.241  Sum_probs=201.5

Q ss_pred             eeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCc
Q 045210          110 VGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVED  189 (873)
Q Consensus       110 ~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~  189 (873)
                      .+..+.+++++++|++|++++|.+++  +| .++.+++|++|++++|.+++. |  ++.+++|++|++++|.++.++   
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---  101 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---  101 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred             CcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---
Confidence            34445578889999999999999987  45 688999999999999998874 4  889999999999999988763   


Q ss_pred             cccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhc
Q 045210          190 FGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL  269 (873)
Q Consensus       190 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  269 (873)
                         +.++++|++|++++|.+++++     +..+++|++|++++|+++++   .++++++|++|++++|... +.+  .+.
T Consensus       102 ---~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~-~~~--~~~  167 (457)
T 3bz5_A          102 ---VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI-TKL--DVT  167 (457)
T ss_dssp             ---CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCC-CCC--CCT
T ss_pred             ---cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcc-ccc--ccc
Confidence               578889999999999888763     57788888888888888886   2778888888888888543 333  466


Q ss_pred             CCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEE
Q 045210          270 GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSL  349 (873)
Q Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  349 (873)
                      .+++|++|++++|++++ +|  +..+++|++|++++|.+++.   .++.+++|++|++++|++++ +|  ++.+++|++|
T Consensus       168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L  238 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF  238 (457)
T ss_dssp             TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred             cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence            77888888888888875 34  67778888888888887754   26777888888888888875 45  6777888888


Q ss_pred             eCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCC
Q 045210          350 DLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLS  429 (873)
Q Consensus       350 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  429 (873)
                      ++++|++++..   ++.+++|+.|++++|.                   |+.|++++|.+.+.+|  ++.+++|+.|+++
T Consensus       239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n~-------------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls  294 (457)
T 3bz5_A          239 DCSVNPLTELD---VSTLSKLTTLHCIQTD-------------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVT  294 (457)
T ss_dssp             ECCSSCCSCCC---CTTCTTCCEEECTTCC-------------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred             EeeCCcCCCcC---HHHCCCCCEEeccCCC-------------------CCEEECCCCccCCccc--ccccccCCEEECC
Confidence            88888777643   3456666666665542                   5555666665555544  3445555555555


Q ss_pred             CCccCcccc
Q 045210          430 FNNISGHIP  438 (873)
Q Consensus       430 ~n~l~~~~~  438 (873)
                      +|...+.+|
T Consensus       295 ~n~~l~~l~  303 (457)
T 3bz5_A          295 HNTQLYLLD  303 (457)
T ss_dssp             TCTTCCEEE
T ss_pred             CCcccceec
Confidence            554443333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.9e-33  Score=317.29  Aligned_cols=341  Identities=26%  Similarity=0.355  Sum_probs=221.8

Q ss_pred             ccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcC
Q 045210          399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS  478 (873)
Q Consensus       399 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  478 (873)
                      ++.|+++++.+... | .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+.. .  +..+++|+.|+++
T Consensus        48 l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~L~  120 (466)
T 1o6v_A           48 VTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT-P--LANLTNLTGLTLF  120 (466)
T ss_dssp             CCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G--GTTCTTCCEEECC
T ss_pred             ccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh-h--hcCCCCCCEEECC
Confidence            88899988888763 3 37778899999999998885443  888889999999988887433 2  6777777777777


Q ss_pred             CCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCccccc
Q 045210          479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFG  558 (873)
Q Consensus       479 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~  558 (873)
                      +|.+..                          ++ .+..+++|++|++++|.+.+ ++.  +..+++|++|++. |.+.+
T Consensus       121 ~n~l~~--------------------------~~-~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~-~~~~~  169 (466)
T 1o6v_A          121 NNQITD--------------------------ID-PLKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG-NQVTD  169 (466)
T ss_dssp             SSCCCC--------------------------CG-GGTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE-ESCCC
T ss_pred             CCCCCC--------------------------Ch-HHcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC-CcccC
Confidence            765432                          12 26677888888888888765 332  5667888888885 44443


Q ss_pred             ccCCccccCCCCeEeCCCCCCCCCCCC-CCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhh
Q 045210          559 QIPDLNDAAQLETLDLSSNSLSGPLPL-IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM  637 (873)
Q Consensus       559 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~  637 (873)
                      . +.+..+++|++|++++|.+.+.... .+++|++|++++|.+.+..+      ++.+++|+.|++++|++.+.  ..+.
T Consensus       170 ~-~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~l~  240 (466)
T 1o6v_A          170 L-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDI--GTLA  240 (466)
T ss_dssp             C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred             c-hhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc------ccccCCCCEEECCCCCcccc--hhhh
Confidence            3 3477777888888888876643211 24566777777766665444      22356666777776666542  3456


Q ss_pred             ccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcE
Q 045210          638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL  717 (873)
Q Consensus       638 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  717 (873)
                      .+++|+.|++++|++.+..|  +..+++|+.|++++|++++..+  +..+++|+.|++++|++.+ ++. +. .+++|+.
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~-~l~~L~~  313 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP-IS-NLKNLTY  313 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG-GG-GCTTCSE
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh-hc-CCCCCCE
Confidence            66666667776666665433  5666666666666666664433  5666666666666666664 332 33 3666666


Q ss_pred             EEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccce
Q 045210          718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLK  797 (873)
Q Consensus       718 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  797 (873)
                      |++++|++++..|  +..+++|+.|++++|++++.  +.+.++++                                 |+
T Consensus       314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~---------------------------------L~  356 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN---------------------------------IN  356 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT---------------------------------CC
T ss_pred             EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC---------------------------------CC
Confidence            6666666665544  55666666666666666643  23333333                                 36


Q ss_pred             EEECCCCcccccCChhhhcCCCCCeeeCCCCcCcc
Q 045210          798 VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG  832 (873)
Q Consensus       798 ~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  832 (873)
                      .|++++|++++.+|  +.++++|+.|++++|.+++
T Consensus       357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             EEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            66666666666555  6666666666666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.8e-32  Score=307.83  Aligned_cols=344  Identities=26%  Similarity=0.374  Sum_probs=287.8

Q ss_pred             CcEEEEecCCCCCCCCCchhhhhccccceeeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCC
Q 045210           81 GHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVG  160 (873)
Q Consensus        81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~  160 (873)
                      .+++.+++.+.                .+. .++ .+..+++|++|++++|.+++.  +. ++.+++|++|++++|.+.+
T Consensus        46 ~~l~~L~l~~~----------------~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~  104 (466)
T 1o6v_A           46 DQVTTLQADRL----------------GIK-SID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIAD  104 (466)
T ss_dssp             HTCCEEECCSS----------------CCC-CCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC
T ss_pred             ccccEEecCCC----------------CCc-cCc-chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCcccc
Confidence            36778888774                222 233 478899999999999999874  44 8999999999999999887


Q ss_pred             CCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCc
Q 045210          161 IIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP  240 (873)
Q Consensus       161 ~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  240 (873)
                      ..|  ++++++|++|++++|.++.++.     +.++++|++|++++|.+...+    .+..+++|++|+++ +.+.+..+
T Consensus       105 ~~~--~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~-~~~~~~~~  172 (466)
T 1o6v_A          105 ITP--LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFG-NQVTDLKP  172 (466)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE-ESCCCCGG
T ss_pred             Chh--hcCCCCCCEEECCCCCCCCChH-----HcCCCCCCEEECCCCccCCCh----hhccCCcccEeecC-CcccCchh
Confidence            655  9999999999999999988754     788999999999999988764    36889999999996 45555433


Q ss_pred             cccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCC
Q 045210          241 LSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFI  320 (873)
Q Consensus       241 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~  320 (873)
                        +.++++|++|++++|.+.+  + ..+..+++|++|++++|.+++..+  ++.+++|++|++++|.+.+.  ..+..++
T Consensus       173 --~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~  243 (466)
T 1o6v_A          173 --LANLTTLERLDISSNKVSD--I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLT  243 (466)
T ss_dssp             --GTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             --hccCCCCCEEECcCCcCCC--C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCC
Confidence              8999999999999999863  2 357889999999999999987655  77899999999999998853  4688999


Q ss_pred             CcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhccccccc
Q 045210          321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLE  400 (873)
Q Consensus       321 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~  400 (873)
                      +|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++.+..+     +..+  +.|+
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-----~~~l--~~L~  312 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-----ISNL--KNLT  312 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-----GGGC--TTCS
T ss_pred             CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-----hcCC--CCCC
Confidence            99999999999986554  8899999999999999987644  8889999999999999988654     2222  3399


Q ss_pred             EEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCC
Q 045210          401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN  480 (873)
Q Consensus       401 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  480 (873)
                      .|++++|.+++..|  +..+++|++|++++|++++.  ..+.++++|++|++++|++++..+   +..+++|+.+++++|
T Consensus       313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ  385 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCE
T ss_pred             EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCC
Confidence            99999999998766  77899999999999999864  468899999999999999987654   788899999999999


Q ss_pred             eeec
Q 045210          481 SLVL  484 (873)
Q Consensus       481 ~~~~  484 (873)
                      .+..
T Consensus       386 ~~~~  389 (466)
T 1o6v_A          386 AWTN  389 (466)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            8775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=312.01  Aligned_cols=306  Identities=22%  Similarity=0.189  Sum_probs=176.1

Q ss_pred             CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210          121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK  200 (873)
Q Consensus       121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~  200 (873)
                      +++++|+|++|.+++. .+..+..+++|++|+|++|.+++..|..|+++++|++|++++|.++.++...   +.++++|+
T Consensus        32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~  107 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---FTGLSNLT  107 (477)
T ss_dssp             TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS---STTCTTCC
T ss_pred             CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc---ccCCCCCC
Confidence            5789999999998875 5778889999999999999988888888999999999999998888776543   34555666


Q ss_pred             EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210          201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS  280 (873)
Q Consensus       201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  280 (873)
                      +|++++|.+....  +..+..+++|++|++++|.+.++.+..|.++++|++|++++|.++ ...+..+..+++|+.|+++
T Consensus       108 ~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          108 KLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             EEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEE
T ss_pred             EEECCCCccccCC--hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCC
Confidence            6666665554442  123344555555555555555554445555555555555555443 2223334444444444444


Q ss_pred             CCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcc
Q 045210          281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI  360 (873)
Q Consensus       281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  360 (873)
                      +|.+.+..+..+..++                        +|++|++++|...+.+|.......+|++|++++|++++..
T Consensus       185 ~n~i~~~~~~~~~~l~------------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  240 (477)
T 2id5_A          185 HLNINAIRDYSFKRLY------------------------RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP  240 (477)
T ss_dssp             SCCCCEECTTCSCSCT------------------------TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred             CCcCcEeChhhcccCc------------------------ccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence            4444443333444444                        4444444444443333333333334444444444444333


Q ss_pred             hhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcccccc
Q 045210          361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS  440 (873)
Q Consensus       361 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  440 (873)
                      +..+..+++|+.|++++|.+++..+..+...     +.|+.|++++|.+.+..|..+..+++|++|++++|++++..+..
T Consensus       241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-----LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             HHHHTTCTTCCEEECCSSCCCEECTTSCTTC-----TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             HHHhcCccccCeeECCCCcCCccChhhcccc-----ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence            3344444444444444444333222211111     11555555555555555666667777777777777777655556


Q ss_pred             ccCCCCCCEEEccCccCCcccC
Q 045210          441 LGQLSSLRYLDVSTNNLNGTLS  462 (873)
Q Consensus       441 l~~l~~L~~L~L~~n~l~~~~~  462 (873)
                      |..+++|++|++++|++.+...
T Consensus       316 ~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             BSCGGGCCEEECCSSCEECSGG
T ss_pred             cCCCcccCEEEccCCCccCccc
Confidence            6667777777777777665443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.8e-32  Score=304.95  Aligned_cols=321  Identities=21%  Similarity=0.227  Sum_probs=267.6

Q ss_pred             CeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEe
Q 045210          124 IHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLD  203 (873)
Q Consensus       124 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~  203 (873)
                      +.++.+++.++.  +|..+.  +++++|+|++|.+++..|..|.++++|++|++++|.++.+.+.               
T Consensus        14 ~~v~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---------------   74 (477)
T 2id5_A           14 RAVLCHRKRFVA--VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG---------------   74 (477)
T ss_dssp             TEEECCSCCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------------
T ss_pred             CEEEeCCCCcCc--CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh---------------
Confidence            456666666664  566543  6899999999999988888899999999999999888766443               


Q ss_pred             CCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCc
Q 045210          204 LSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN  283 (873)
Q Consensus       204 L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  283 (873)
                                    .+..+++|++|++++|.++.+.+..|.++++|++|++++|.+. ...+..+..+++|++|++++|.
T Consensus        75 --------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~  139 (477)
T 2id5_A           75 --------------AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND  139 (477)
T ss_dssp             --------------TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTT
T ss_pred             --------------hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCc
Confidence                          2345556666666666666666667777888888888888776 4556677788888888888888


Q ss_pred             CCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhh
Q 045210          284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA  363 (873)
Q Consensus       284 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  363 (873)
                      +++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++..
T Consensus       140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  219 (477)
T 2id5_A          140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN  219 (477)
T ss_dssp             CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred             cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence            88777888889999999999999998777778999999999999999999888888999999999999999988888877


Q ss_pred             hhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccC
Q 045210          364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQ  443 (873)
Q Consensus       364 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  443 (873)
                      .....+|++|++++|.+++.....+...     +.|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..
T Consensus       220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          220 CLYGLNLTSLSITHCNLTAVPYLAVRHL-----VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             TTTTCCCSEEEEESSCCCSCCHHHHTTC-----TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred             cccCccccEEECcCCcccccCHHHhcCc-----cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence            7777899999999999998766555433     23999999999999988888999999999999999999888999999


Q ss_pred             CCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeec
Q 045210          444 LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVL  484 (873)
Q Consensus       444 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  484 (873)
                      +++|++|++++|+++ .++...|..+++|+.+++++|.+..
T Consensus       295 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             cccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCccC
Confidence            999999999999998 5666688999999999999998763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.5e-32  Score=299.02  Aligned_cols=316  Identities=23%  Similarity=0.256  Sum_probs=247.0

Q ss_pred             cCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210          118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS  197 (873)
Q Consensus       118 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~  197 (873)
                      ..++++++|++++|.++.. .+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.+++..   +.+++
T Consensus        42 ~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~  117 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVP  117 (390)
T ss_dssp             GGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCT
T ss_pred             cccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH---hcCCC
Confidence            3578899999999988763 2344688999999999999998888888999999999999999988877654   57788


Q ss_pred             CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEE
Q 045210          198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL  277 (873)
Q Consensus       198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  277 (873)
                      +|++|++++|.++.++.  ..+..+++|++|++++|.+.++.+..+.++++|++|++++|.++..    .+..+++|++|
T Consensus       118 ~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L  191 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHA  191 (390)
T ss_dssp             TCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEE
T ss_pred             CCCEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----cccccccccee
Confidence            99999999999887753  2357889999999999999999888999999999999999998732    35678899999


Q ss_pred             EccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCC
Q 045210          278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE  357 (873)
Q Consensus       278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  357 (873)
                      ++++|.+++     +...++|++|++++|.+... |..  ..++|++|++++|.+++.  ..++.+++|++|++++|.++
T Consensus       192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          192 NVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE  261 (390)
T ss_dssp             ECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence            999998763     33456899999999988743 432  357899999999998853  57888999999999999998


Q ss_pred             CcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccc
Q 045210          358 SKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHI  437 (873)
Q Consensus       358 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  437 (873)
                      +..|..+..+++|++|++++|++++.....      ...+.|++|++++|++.+ +|..++.+++|++|++++|++++. 
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-  333 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISNNRLVALNLYG------QPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-  333 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCSSCCCEEECSS------SCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred             CcChhHccccccCCEEECCCCcCcccCccc------CCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-
Confidence            888888999999888888888887643221      011237777777777764 444566677777777777777633 


Q ss_pred             cccccCCCCCCEEEccCccCCcccCh
Q 045210          438 PLSLGQLSSLRYLDVSTNNLNGTLSE  463 (873)
Q Consensus       438 ~~~l~~l~~L~~L~L~~n~l~~~~~~  463 (873)
                      +  +..+++|++|++++|++.+....
T Consensus       334 ~--~~~~~~L~~L~l~~N~~~~~~~~  357 (390)
T 3o6n_A          334 K--LSTHHTLKNLTLSHNDWDCNSLR  357 (390)
T ss_dssp             C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             C--chhhccCCEEEcCCCCccchhHH
Confidence            3  56677777777777777654333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-32  Score=291.33  Aligned_cols=249  Identities=28%  Similarity=0.422  Sum_probs=170.0

Q ss_pred             CCCCeEeCCCCCCCC--CCCCC---CCCCcEEEccC-ccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccc
Q 045210          567 AQLETLDLSSNSLSG--PLPLI---PSSLTTLDLSS-NFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWS  640 (873)
Q Consensus       567 ~~L~~L~l~~n~l~~--~~~~~---~~~L~~L~l~~-n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~  640 (873)
                      .+++.|++++|.+.+  .+|..   +++|++|++++ |.+.+.+|..+.    ++++|++|++++|++++.+|..+.+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA----KLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG----GCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh----cCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            356777777777776  55543   46677777773 666666665533    366777777777777766777777777


Q ss_pred             cCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCC-CCcEEEccCCeecccCChhHHhhcccCcEEE
Q 045210          641 FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT-ELRLFDISENEFVGNIPTWIGERLSGIILLS  719 (873)
Q Consensus       641 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  719 (873)
                      +|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+.. ++ |+.|+
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~  203 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVD  203 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEE
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEE
Confidence            777777777777766777777777777777777777767777777666 6777777777777667766654 54 77777


Q ss_pred             ccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEE
Q 045210          720 LRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVL  799 (873)
Q Consensus       720 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  799 (873)
                      +++|++++.+|..+..+++|+.|++++|.+++.+|. +..++                                 +|+.|
T Consensus       204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~---------------------------------~L~~L  249 (313)
T 1ogq_A          204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK---------------------------------NLNGL  249 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT---------------------------------TCCEE
T ss_pred             CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC---------------------------------CCCEE
Confidence            777777776666677777777777777777655544 33322                                 34677


Q ss_pred             ECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCc-ccc
Q 045210          800 DLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNR-LQG  856 (873)
Q Consensus       800 ~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g  856 (873)
                      |+++|+++|.+|..++++++|++|++++|+++|.+|.. +.+++|+.+++++|+ +.|
T Consensus       250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            77777777777777777777777777777777777765 667777777777776 444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.6e-30  Score=282.10  Aligned_cols=306  Identities=25%  Similarity=0.335  Sum_probs=207.5

Q ss_pred             ccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCC
Q 045210          117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHL  196 (873)
Q Consensus       117 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l  196 (873)
                      +..+++|++|+++++.+..  ++ .++.+++|++|++++|.+++..+  +.++++|++|++++|.++.++     .+.++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-----~~~~l  109 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-----ALQNL  109 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-----GGTTC
T ss_pred             chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-----HHcCC
Confidence            4578899999999998875  34 37889999999999998876544  889999999999999888764     36788


Q ss_pred             CCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcE
Q 045210          197 SLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVF  276 (873)
Q Consensus       197 ~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  276 (873)
                      ++|++|++++|.+...+.    +..+++|++|++++|......+. +.++++|++|++++|.+.+  ++. +..+++|++
T Consensus       110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~--~~~-~~~l~~L~~  181 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD--VTP-IANLTDLYS  181 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSE
T ss_pred             CcCCEEECcCCcccCchh----hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC--chh-hccCCCCCE
Confidence            888888888888877642    56778888888888865554433 7778888888888887752  222 667777888


Q ss_pred             EEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcC
Q 045210          277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL  356 (873)
Q Consensus       277 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  356 (873)
                      |++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus       182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence            8888877764332  6777778888887777775433  6777777888887777774333  77777777777777777


Q ss_pred             CCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcc
Q 045210          357 ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH  436 (873)
Q Consensus       357 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  436 (873)
                      ++.  ..+..+++|++|++++|.+++..  .   +..+  +.|+.|++++|.+.+..+..++.+++|++|++++|++++.
T Consensus       256 ~~~--~~~~~l~~L~~L~l~~n~l~~~~--~---~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          256 SDI--NAVKDLTKLKMLNVGSNQISDIS--V---LNNL--SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCCG--G---GGGC--TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCC--hhHhcCCCcCEEEccCCccCCCh--h---hcCC--CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            653  45666777666666666665531  0   1111  1255555555555555555555555555555555555543


Q ss_pred             ccccccCCCCCCEEEccCccC
Q 045210          437 IPLSLGQLSSLRYLDVSTNNL  457 (873)
Q Consensus       437 ~~~~l~~l~~L~~L~L~~n~l  457 (873)
                      .|  +..+++|++|++++|++
T Consensus       327 ~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          327 RP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GG--GGGCTTCSEESSSCC--
T ss_pred             cC--hhhhhccceeehhhhcc
Confidence            33  44555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3.5e-31  Score=308.02  Aligned_cols=314  Identities=23%  Similarity=0.257  Sum_probs=240.0

Q ss_pred             CCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCC
Q 045210          119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSL  198 (873)
Q Consensus       119 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~  198 (873)
                      .+++++.+++++|.+... .+..++.+++|++|+|++|.+++..|..|+.+++|++|++++|.++.+++..   +.++++
T Consensus        49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~  124 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPL  124 (597)
T ss_dssp             GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred             cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH---HcCCCC
Confidence            467888999998888764 3445788899999999999988888888899999999999999888877654   467888


Q ss_pred             CcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEE
Q 045210          199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLD  278 (873)
Q Consensus       199 L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  278 (873)
                      |++|++++|.++.++.  ..+..+++|++|++++|.+.++.+..|+++++|++|++++|.++..    .+..+++|+.|+
T Consensus       125 L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~  198 (597)
T 3oja_B          125 LTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHAN  198 (597)
T ss_dssp             CCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEE
T ss_pred             CCEEEeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhhhhhhhh
Confidence            8999999988887653  2357888999999999999999888899999999999999988632    256678899999


Q ss_pred             ccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCC
Q 045210          279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES  358 (873)
Q Consensus       279 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  358 (873)
                      +++|.+++     +...++|++|++++|.+... +..+  .++|++|++++|.+++  +..++.+++|++|++++|.+++
T Consensus       199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          199 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             CCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred             cccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence            99988764     34456889999999988743 3222  3689999999998885  3678889999999999999988


Q ss_pred             cchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcccc
Q 045210          359 KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP  438 (873)
Q Consensus       359 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  438 (873)
                      ..|..++.+++|+.|++++|.+++.+...    .  ..+.|+.|++++|.+.+ +|..++.+++|++|++++|.+++. +
T Consensus       269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----~--~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~  340 (597)
T 3oja_B          269 IMYHPFVKMQRLERLYISNNRLVALNLYG----Q--PIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K  340 (597)
T ss_dssp             EESGGGTTCSSCCEEECTTSCCCEEECSS----S--CCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred             CCHHHhcCccCCCEEECCCCCCCCCCccc----c--cCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C
Confidence            88888888888888888888877643211    0  11237777777777764 455566677777777777777643 2


Q ss_pred             ccccCCCCCCEEEccCccCCcccC
Q 045210          439 LSLGQLSSLRYLDVSTNNLNGTLS  462 (873)
Q Consensus       439 ~~l~~l~~L~~L~L~~n~l~~~~~  462 (873)
                        +..+++|+.|++++|++.+...
T Consensus       341 --~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          341 --LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             --CCTTCCCSEEECCSSCEEHHHH
T ss_pred             --hhhcCCCCEEEeeCCCCCChhH
Confidence              5566677777777777665433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=6.7e-32  Score=288.76  Aligned_cols=280  Identities=18%  Similarity=0.202  Sum_probs=160.1

Q ss_pred             ccCCHHHHHHHHHhhhcC-CCCCCCcCCCc---cCCCCCCccceeeEecC--------CCCcEEEEecCCCCCCCCCchh
Q 045210           33 AGCIESEREALLSFKQDL-EDPSNRLASWN---NIGVGDCCKWYGVVCDN--------ITGHVLELRLRNPSRDDGSPAE  100 (873)
Q Consensus        33 ~~~~~~~~~~ll~~k~~~-~~~~~~~~~W~---~~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~~  100 (873)
                      ..+..+|++||++||+++ .+|.+...+|.   .. ..++|.|.|+.|+.        ..++|+.+++++.         
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~-~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---------   91 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQIETRTGRALKATADLLEDATQPGRVALELRSV---------   91 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTT-CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS---------
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccc-cccccccCCcchhhhHHHHhcccccceeEEEccCC---------
Confidence            456789999999999998 57777788894   23 57899999999952        2356777777664         


Q ss_pred             hhhccccceeeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCC
Q 045210          101 YEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPN  180 (873)
Q Consensus       101 ~~~~~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  180 (873)
                             .+. .+|+.++++++|++|+|++|.++  .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++|
T Consensus        92 -------~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           92 -------PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             -------CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred             -------Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence                   333 56666666777777777777666  26666666777777777777666 55666666666776666665


Q ss_pred             CCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCC
Q 045210          181 YLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFA  260 (873)
Q Consensus       181 ~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  260 (873)
                      .+....+..+..         .                                   ..+..+.++++|++|++++|.++
T Consensus       161 ~~~~~~p~~~~~---------~-----------------------------------~~~~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          161 PELTELPEPLAS---------T-----------------------------------DASGEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             TTCCCCCSCSEE---------E-----------------------------------C-CCCEEESTTCCEEEEEEECCC
T ss_pred             CCccccChhHhh---------c-----------------------------------cchhhhccCCCCCEEECcCCCcC
Confidence            433211111100         0                                   00112333444444444444442


Q ss_pred             CCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccc
Q 045210          261 DSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSL  340 (873)
Q Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l  340 (873)
                        .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+
T Consensus       197 --~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~  273 (328)
T 4fcg_A          197 --SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI  273 (328)
T ss_dssp             --CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred             --cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence              333444444455555555554442 33345555555555555555555555555555555555555555555555555


Q ss_pred             cCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 045210          341 GNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL  380 (873)
Q Consensus       341 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  380 (873)
                      +.+++|++|++++|.+.+.+|..++.+++|+.+++..+.+
T Consensus       274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            5555555555555555555555555555555555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.6e-29  Score=272.46  Aligned_cols=308  Identities=23%  Similarity=0.363  Sum_probs=260.6

Q ss_pred             cccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCcccccc
Q 045210          141 FLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITN  220 (873)
Q Consensus       141 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~  220 (873)
                      .+..+++|++|+++++.+... | .+..+++|++|++++|.++.++.     +.++++|++|++++|.++..+    .+.
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~~~----~~~  107 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDIS----ALQ  107 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCG----GGT
T ss_pred             cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccCch----HHc
Confidence            356789999999999998754 4 48899999999999999988765     689999999999999988763    478


Q ss_pred             CCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCE
Q 045210          221 SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH  300 (873)
Q Consensus       221 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  300 (873)
                      .+++|++|++++|.+.+..+  +.++++|++|++++|... .. +..+..+++|++|++++|.+.+..+  +..+++|++
T Consensus       108 ~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~-~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             TCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTC-CC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             CCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCc-cc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            89999999999999998765  899999999999999654 23 3448899999999999999885544  889999999


Q ss_pred             EECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 045210          301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL  380 (873)
Q Consensus       301 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  380 (873)
                      |++++|.+.+..+  +..+++|+++++++|.+.+..+  ++.+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus       182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence            9999999985433  8899999999999999986544  8899999999999999987644  88999999999999999


Q ss_pred             cchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcc
Q 045210          381 SQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT  460 (873)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  460 (873)
                      ++..     .+..+  ++|+.|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus       256 ~~~~-----~~~~l--~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          256 SDIN-----AVKDL--TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CCCG-----GGTTC--TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCCh-----hHhcC--CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            8752     12222  3399999999999885  3588899999999999999988888899999999999999999865


Q ss_pred             cChhhhhcccccceEEcCCCeee
Q 045210          461 LSENHFANLTKLVGFDASGNSLV  483 (873)
Q Consensus       461 ~~~~~~~~l~~L~~L~l~~n~~~  483 (873)
                      .+   +..+++|+.+++++|.++
T Consensus       327 ~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          327 RP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GG---GGGCTTCSEESSSCC---
T ss_pred             cC---hhhhhccceeehhhhccc
Confidence            44   778899999999998764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.2e-33  Score=316.12  Aligned_cols=386  Identities=20%  Similarity=0.171  Sum_probs=241.0

Q ss_pred             CCCCEEeCCCCccCcccccc-ccCCCCCCEEEccCccCCcccC---hhhhhcccccceEEcCCCeeeccccCCCCCCCcc
Q 045210          421 KNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGTLS---ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQ  496 (873)
Q Consensus       421 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  496 (873)
                      ++|++|++++|+++...... +..+++|++|++++|.+.+...   ...+..+++|+.|++++|.+...           
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-----------   71 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV-----------   71 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-----------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH-----------
Confidence            56788888888877543333 6677888888888888763211   12455667777777777655422           


Q ss_pred             ccEEeccccccCCCcchhhhcCC----cccEEEccCCCCCccc---ChhHHhcCCCCcEEeccCcccccccC-C-----c
Q 045210          497 LQAIGLSSCFIGPQFPQWLLSQN----HLIYLDLSNSSISDTI---PDRLVKSLSQINYLNLSYNQIFGQIP-D-----L  563 (873)
Q Consensus       497 L~~L~l~~~~~~~~~~~~l~~~~----~L~~L~l~~n~l~~~~---p~~~~~~l~~L~~L~l~~n~~~~~~~-~-----~  563 (873)
                                   ........++    +|++|++++|.+.+..   ....+..+++|++|++++|.+.+..+ .     .
T Consensus        72 -------------~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           72 -------------GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             -------------HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             -------------HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence                         0111222233    6888888888776421   12334556788888888887764322 1     1


Q ss_pred             cccCCCCeEeCCCCCCCCCC----CC---CCCCCcEEEccCccCcCcchhhhhhhcc-cCCCCceEeccCCcccCC----
Q 045210          564 NDAAQLETLDLSSNSLSGPL----PL---IPSSLTTLDLSSNFLSGTLSRFLCNEMN-NSMRLQVLNLGNNTLSGE----  631 (873)
Q Consensus       564 ~~~~~L~~L~l~~n~l~~~~----~~---~~~~L~~L~l~~n~l~~~~~~~~~~~l~-~~~~L~~L~Ls~n~l~~~----  631 (873)
                      ...++|++|++++|.+++..    +.   ..++|++|++++|.+++..+..+...+. ..++|++|++++|.+++.    
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  218 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  218 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence            22456788888888776532    11   1467778888877776655554444332 245777888888777753    


Q ss_pred             CChhhhccccCcEEEcCCCcCccCC-----cccccCCCCccEEEccCCccccc----CCcccccCCCCcEEEccCCeecc
Q 045210          632 IPDCWMNWSFLFFLHLGENDFTGNL-----PTSLGTLSSLQILHLRGNRFSGK----IPVSLQNCTELRLFDISENEFVG  702 (873)
Q Consensus       632 ~p~~l~~l~~L~~L~l~~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~  702 (873)
                      ++..+..+++|++|++++|++.+..     +..+..+++|++|++++|+++..    ++..+..+++|++|++++|.+.+
T Consensus       219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence            4566677777888888877776432     22223567778888888777754    45666667778888888877765


Q ss_pred             cCChhHHhh----cccCcEEEccCCeeeee----CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhc
Q 045210          703 NIPTWIGER----LSGIILLSLRANQFHGF----FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFF  774 (873)
Q Consensus       703 ~ip~~~~~~----l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~  774 (873)
                      ..+..+...    .++|+.|++++|.+++.    ++..+..+++|+.||+++|.+++..+..+...-.-           
T Consensus       299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-----------  367 (461)
T 1z7x_W          299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ-----------  367 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS-----------
T ss_pred             HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC-----------
Confidence            544444432    25777777777777654    44555666777777777777775544444321100           


Q ss_pred             hhheeeecccceeccCCCCccceEEECCCCcccc----cCChhhhcCCCCCeeeCCCCcCccc--------CCccccCCC
Q 045210          775 EDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG----EIPSQVTNLVGLQTLKLSHNFFSGR--------IPVNMGAMK  842 (873)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~--------ip~~l~~l~  842 (873)
                                       ..+.|+.|++++|++++    .+|..+..+++|++|++++|++++.        +|..   ..
T Consensus       368 -----------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~---~~  427 (461)
T 1z7x_W          368 -----------------PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP---GC  427 (461)
T ss_dssp             -----------------TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST---TC
T ss_pred             -----------------CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC---Cc
Confidence                             02345778888888775    6777777778888888888877754        2221   33


Q ss_pred             CCCeEeccCCccccccccc
Q 045210          843 SVEALDFSSNRLQGEIPKN  861 (873)
Q Consensus       843 ~L~~L~ls~N~l~g~iP~~  861 (873)
                      .|+.|++.++......+..
T Consensus       428 ~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          428 LLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             CCCEEECTTCCCCHHHHHH
T ss_pred             chhheeecccccCHHHHHH
Confidence            5666666666665544443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=8.6e-30  Score=280.79  Aligned_cols=311  Identities=21%  Similarity=0.247  Sum_probs=205.8

Q ss_pred             CCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCC
Q 045210          343 LTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKN  422 (873)
Q Consensus       343 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  422 (873)
                      +++++.++++++.++...+..+..+++|++|++++|                             .+.+..+..++.+++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-----------------------------~i~~~~~~~~~~l~~   94 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-----------------------------QIEEIDTYAFAYAHT   94 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-----------------------------CCCEECTTTTTTCTT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCC-----------------------------cccccChhhccCCCC
Confidence            456666666666665544444556655555544444                             444444445666666


Q ss_pred             CCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEec
Q 045210          423 LDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGL  502 (873)
Q Consensus       423 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  502 (873)
                      |++|++++|++++..|..++++++|++|++++|.++ .++...|..+++|+.|++++|.+..                  
T Consensus        95 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~------------------  155 (390)
T 3o6n_A           95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER------------------  155 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB------------------
T ss_pred             cCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc------------------
Confidence            777777766666655566666666777777666665 4444444555555555555544321                  


Q ss_pred             cccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCC
Q 045210          503 SSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGP  582 (873)
Q Consensus       503 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~  582 (873)
                             ..+..+..+++|++|++++|.+.+. +   ...+++|+.+++++|.+.+.    ..                 
T Consensus       156 -------~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~~~----~~-----------------  203 (390)
T 3o6n_A          156 -------IEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLSTL----AI-----------------  203 (390)
T ss_dssp             -------CCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCSEE----EC-----------------
T ss_pred             -------cChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeeccccccccc----CC-----------------
Confidence                   1233444555566666666655432 1   22345566666666554431    11                 


Q ss_pred             CCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccC
Q 045210          583 LPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGT  662 (873)
Q Consensus       583 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~  662 (873)
                          +.+|+.|++++|.+......       ..++|+.|++++|.+++.  ..+..+++|++|++++|++.+..|..+..
T Consensus       204 ----~~~L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          204 ----PIAVEELDASHNSINVVRGP-------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             ----CSSCSEEECCSSCCCEEECC-------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ----CCcceEEECCCCeeeecccc-------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence                23455555555555443111       146788888888888753  56788888999999999888888888888


Q ss_pred             CCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEE
Q 045210          663 LSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKIL  742 (873)
Q Consensus       663 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  742 (873)
                      +++|+.|++++|++++ +|..+..+++|++|++++|++. .+|..+.. +++|+.|++++|++++. |  +..+++|+.|
T Consensus       271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L  344 (390)
T 3o6n_A          271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTL-K--LSTHHTLKNL  344 (390)
T ss_dssp             CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred             cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccc-cCcCCEEECCCCcccee-C--chhhccCCEE
Confidence            9999999999998885 5666678899999999999988 78888775 89999999999998855 2  6788999999


Q ss_pred             eCCCCccccc
Q 045210          743 DLSSNNLTGV  752 (873)
Q Consensus       743 ~Ls~N~l~~~  752 (873)
                      ++++|++++.
T Consensus       345 ~l~~N~~~~~  354 (390)
T 3o6n_A          345 TLSHNDWDCN  354 (390)
T ss_dssp             ECCSSCEEHH
T ss_pred             EcCCCCccch
Confidence            9999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.1e-29  Score=295.38  Aligned_cols=127  Identities=22%  Similarity=0.288  Sum_probs=74.9

Q ss_pred             CceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210          618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE  697 (873)
Q Consensus       618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  697 (873)
                      |+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..++.+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus       234 L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred             CCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence            4444444444433  2344555555555555555555555555566666666666666654 344445566666666666


Q ss_pred             CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccc
Q 045210          698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGV  752 (873)
Q Consensus       698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  752 (873)
                      |.++ .+|.++.. +++|+.|++++|++.+.   .+..+++|+.|++++|++++.
T Consensus       311 N~l~-~i~~~~~~-l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          311 NHLL-HVERNQPQ-FDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SCCC-CCGGGHHH-HTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEHH
T ss_pred             CCCC-ccCccccc-CCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCCh
Confidence            6666 56666654 67777777777776644   245566777777777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.2e-32  Score=309.21  Aligned_cols=111  Identities=21%  Similarity=0.266  Sum_probs=61.5

Q ss_pred             CCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCC----CChhhhcCCCCCCEEECCCCCCCCCCchhhh-cCC-
Q 045210          247 SSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN-KFI-  320 (873)
Q Consensus       247 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~-  320 (873)
                      ++|++|++++|.+++......+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4566677776666533333345666677777777776653    2345566666666666666665543333332 233 


Q ss_pred             ---CcCEEEccCCcCCc----cCcccccCCCCCCEEeCCCCcCC
Q 045210          321 ---DLEYLSLSYNELQG----SIPGSLGNLTSIKSLDLSFNRLE  357 (873)
Q Consensus       321 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~  357 (873)
                         +|++|++++|.++.    .++..+..+++|++|++++|.++
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence               45666666555552    23444555555555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.8e-28  Score=263.75  Aligned_cols=283  Identities=20%  Similarity=0.243  Sum_probs=215.5

Q ss_pred             cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCc
Q 045210          520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN  598 (873)
Q Consensus       520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  598 (873)
                      +++.++++++.+. .+|..+   .++++.|++++|.+.+..+ .+..+                     ++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l---------------------~~L~~L~L~~n   88 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGL---------------------QHLYALVLVNN   88 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTC---------------------TTCCEEECCSS
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCC---------------------CCCcEEECCCC
Confidence            4555666655554 344332   1345555555555554433 34444                     45555555555


Q ss_pred             cCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCccc-
Q 045210          599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS-  677 (873)
Q Consensus       599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-  677 (873)
                      .+++..|..    +.++++|++|++++|+++ .+|..+.  ++|++|++++|++.+..+..+..+++|+.|++++|+++ 
T Consensus        89 ~l~~~~~~~----~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A           89 KISKIHEKA----FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             CCCEECGGG----STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             ccCccCHhH----hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence            555554543    445888999999999888 5555544  78999999999998766667888999999999999886 


Q ss_pred             -ccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChh
Q 045210          678 -GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC  756 (873)
Q Consensus       678 -~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  756 (873)
                       +..|..+..+ +|++|++++|+++ .+|..+   .++|+.|++++|++++..|..+..+++|+.|++++|++++..|..
T Consensus       162 ~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  236 (332)
T 2ft3_A          162 SGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS  236 (332)
T ss_dssp             GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred             CCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence             4677778877 8999999999988 577765   478999999999999888888999999999999999999877777


Q ss_pred             hhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCc
Q 045210          757 INNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPV  836 (873)
Q Consensus       757 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  836 (873)
                      ++.+++|                                 +.|++++|+++ .+|..++.+++|++|++++|.+++..+.
T Consensus       237 ~~~l~~L---------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          237 LSFLPTL---------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             GGGCTTC---------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             hhCCCCC---------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence            7766665                                 88999999998 7899999999999999999999977666


Q ss_pred             cccC------CCCCCeEeccCCccc--cccccccccCCCCCcccC
Q 045210          837 NMGA------MKSVEALDFSSNRLQ--GEIPKNMVNLEFLEIFNI  873 (873)
Q Consensus       837 ~l~~------l~~L~~L~ls~N~l~--g~iP~~l~~l~~L~~l~l  873 (873)
                      .+..      ..+|+.+++++|++.  +..|..+..++.|+.+++
T Consensus       283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l  327 (332)
T 2ft3_A          283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF  327 (332)
T ss_dssp             SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred             HccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence            6654      367889999999987  667778888999988875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.9e-28  Score=263.59  Aligned_cols=295  Identities=18%  Similarity=0.240  Sum_probs=212.6

Q ss_pred             CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210          121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK  200 (873)
Q Consensus       121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~  200 (873)
                      .++++++++++.++.  +|..+.  ++|++|++++|.+.+..|..++++++|++|++++|.++.+.+..   +.++++|+
T Consensus        33 c~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~  105 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA---FSPLRKLQ  105 (332)
T ss_dssp             EETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG---STTCTTCC
T ss_pred             ccCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH---hhCcCCCC
Confidence            378999999999875  676653  78999999999999888889999999999999999998775543   67889999


Q ss_pred             EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCC-CchhHhhcCCCCCcEEEc
Q 045210          201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-SSIVNQVLGLVNLVFLDL  279 (873)
Q Consensus       201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L  279 (873)
                      +|++++|.++.++...     .++|++|++++|.+.++.+..|.++++|++|++++|.++. +..+..+..+ +|++|++
T Consensus       106 ~L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l  179 (332)
T 2ft3_A          106 KLYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI  179 (332)
T ss_dssp             EEECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred             EEECCCCcCCccCccc-----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence            9999999988775422     2789999999999998888889999999999999998852 2334455555 7888888


Q ss_pred             cCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCc
Q 045210          280 STNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK  359 (873)
Q Consensus       280 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  359 (873)
                      ++|.+++ +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|++++|+++ .
T Consensus       180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  255 (332)
T 2ft3_A          180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R  255 (332)
T ss_dssp             CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred             cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence            8888774 454443  67788888888877766677777788888888888777766667777777888888877776 4


Q ss_pred             chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccC--ccc
Q 045210          360 IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS--GHI  437 (873)
Q Consensus       360 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~  437 (873)
                      +|..+..+++|++|++++|++++.....+...                     .+  ....+.|+.|++++|++.  +..
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~---------------------~~--~~~~~~l~~L~l~~N~~~~~~~~  312 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV---------------------GF--GVKRAYYNGISLFNNPVPYWEVQ  312 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS---------------------SC--CSSSCCBSEEECCSSSSCGGGSC
T ss_pred             cChhhhcCccCCEEECCCCCCCccChhHcccc---------------------cc--ccccccccceEeecCcccccccC
Confidence            66667777776666666666654332221100                     00  011345566666666554  344


Q ss_pred             cccccCCCCCCEEEccCc
Q 045210          438 PLSLGQLSSLRYLDVSTN  455 (873)
Q Consensus       438 ~~~l~~l~~L~~L~L~~n  455 (873)
                      |..+..+++|+.+++++|
T Consensus       313 ~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          313 PATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGGGTTBCCSTTEEC---
T ss_pred             cccccccchhhhhhcccc
Confidence            555555666666666555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=7.5e-28  Score=258.74  Aligned_cols=245  Identities=22%  Similarity=0.327  Sum_probs=146.8

Q ss_pred             CCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcE
Q 045210          122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKH  201 (873)
Q Consensus       122 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~  201 (873)
                      ++++++++++.++.  +|..+.  ++|++|++++|.+++..+..++++++|++|++++|.++.+.+..   +.++++|++
T Consensus        32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~  104 (330)
T 1xku_A           32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA---FAPLVKLER  104 (330)
T ss_dssp             ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT---TTTCTTCCE
T ss_pred             CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH---hcCCCCCCE
Confidence            34555555555543  343332  45555666655555555555555566666666655555543322   345555555


Q ss_pred             EeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCC-CchhHhhcCCCCCcEEEcc
Q 045210          202 LDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-SSIVNQVLGLVNLVFLDLS  280 (873)
Q Consensus       202 L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~  280 (873)
                      |++++|.++.++..     ..++|++|++++|.+.+..+..+.++++|++|++++|.+.. +..+..+.++++|++|+++
T Consensus       105 L~Ls~n~l~~l~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          105 LYLSKNQLKELPEK-----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             EECCSSCCSBCCSS-----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             EECCCCcCCccChh-----hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            55555555544321     12567777777777777777777777777777777777652 1334556667777777777


Q ss_pred             CCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcc
Q 045210          281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI  360 (873)
Q Consensus       281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  360 (873)
                      +|.++. +|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++|++|++++|+++ .+
T Consensus       180 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  255 (330)
T 1xku_A          180 DTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV  255 (330)
T ss_dssp             SSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred             CCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence            777663 443332  56777777777666655666666677777777777666655556666666666666666665 45


Q ss_pred             hhhhhcCCCCCEEEccCCcCcc
Q 045210          361 PRAFKRLRHLRSVNLSGNKLSQ  382 (873)
Q Consensus       361 ~~~l~~l~~L~~L~L~~n~l~~  382 (873)
                      |..+..+++|++|++++|++++
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCC
T ss_pred             ChhhccCCCcCEEECCCCcCCc
Confidence            5556666655555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.5e-27  Score=256.48  Aligned_cols=284  Identities=22%  Similarity=0.260  Sum_probs=193.2

Q ss_pred             cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCc
Q 045210          520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN  598 (873)
Q Consensus       520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  598 (873)
                      +++.++++++.+. .+|..+   .++++.|++++|.+++..+ .+..+++|++|++++|.+.+.                
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------   91 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI----------------   91 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB----------------
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee----------------
Confidence            5677777777665 345433   2466777777777766555 566666666666665555543                


Q ss_pred             cCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccc
Q 045210          599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG  678 (873)
Q Consensus       599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  678 (873)
                           .|..    +..+++|++|++++|+++ .+|..+.  ++|++|++++|++.+..+..+.++++|+.|++++|++..
T Consensus        92 -----~~~~----~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           92 -----SPGA----FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             -----CTTT----TTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             -----CHHH----hcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence                 3332    333667777777777766 3444433  577777777777776666667777777777777777743


Q ss_pred             --cCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChh
Q 045210          679 --KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC  756 (873)
Q Consensus       679 --~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  756 (873)
                        ..+..+..+++|++|++++|.++ .+|..+   .++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS  235 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence              56667777777777777777776 566654   367778888888877777777777888888888888877666666


Q ss_pred             hhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCc
Q 045210          757 INNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPV  836 (873)
Q Consensus       757 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  836 (873)
                      +..+++|                                 +.|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus       236 ~~~l~~L---------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          236 LANTPHL---------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             GGGSTTC---------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             ccCCCCC---------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence            6655554                                 67888888877 6777778888888888888888766555


Q ss_pred             cccC------CCCCCeEeccCCcccc--ccccccccCCCCCcccC
Q 045210          837 NMGA------MKSVEALDFSSNRLQG--EIPKNMVNLEFLEIFNI  873 (873)
Q Consensus       837 ~l~~------l~~L~~L~ls~N~l~g--~iP~~l~~l~~L~~l~l  873 (873)
                      .+..      ...++.+++++|++..  ..|..+..+..|+.+++
T Consensus       282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L  326 (330)
T 1xku_A          282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL  326 (330)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred             hcCCcccccccccccceEeecCcccccccCccccccccceeEEEe
Confidence            5543      3667788888887752  44566777777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.3e-30  Score=304.63  Aligned_cols=429  Identities=17%  Similarity=0.090  Sum_probs=239.9

Q ss_pred             ccCccCCCCCCeecCCCCCCC---CCCCCcccc------------CCCCCCEEeccCCcCCCCCcccccC-CC-CCcEEE
Q 045210          114 NPSLLGLKHLIHLDLSYNDFQ---GIQIPRFLG------------SLENLMYLNISRAGFVGIIPHQIGN-LS-NLQFLD  176 (873)
Q Consensus       114 ~~~l~~l~~L~~L~Ls~n~~~---~~~~~~~l~------------~l~~L~~L~L~~n~l~~~~p~~l~~-l~-~L~~L~  176 (873)
                      +..+..+++|++|+|+++...   +. +|..++            .+++|++|+|++|.+++..+..++. ++ +|++|+
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            344567888999999876421   11 232222            6888999999988877766666665 33 488888


Q ss_pred             CCCCCCCCCccCccc-cccCCCCCcEEeCCCCCCCCCCC--ccccccCCCCCCEEEccCCCCCCCCc----cccCCCCCc
Q 045210          177 LRPNYLGGLYVEDFG-WVSHLSLLKHLDLSGVDLSKTSD--GPLITNSLHSLETLRFSGCLLHHISP----LSFANFSSL  249 (873)
Q Consensus       177 L~~n~l~~l~~~~~~-~l~~l~~L~~L~L~~~~l~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L  249 (873)
                      +++|.-  +....+. ...++++|++|++++|.+++...  .......+++|++|++++|.+++...    ..+.++++|
T Consensus       145 L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L  222 (592)
T 3ogk_B          145 LDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL  222 (592)
T ss_dssp             EESCEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred             CcCCCC--cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence            888751  1111111 12467778888888777654421  12234456777777777777664332    233456677


Q ss_pred             cEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCC---CCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEE
Q 045210          250 VTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ---GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLS  326 (873)
Q Consensus       250 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  326 (873)
                      ++|++++|.+.  .++..+..+++|++|+++.....   +..+..+..+++|+.|+++++.. +.+|..+..+++|++|+
T Consensus       223 ~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          223 VSVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             CEEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred             cEEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence            77777776663  35566666677777776643222   22334455666666666665432 34556666666677777


Q ss_pred             ccCCcCCccCc-ccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccC-----------CcCcchhhHHHHHhhhc
Q 045210          327 LSYNELQGSIP-GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG-----------NKLSQEISQVLDMFSAC  394 (873)
Q Consensus       327 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~~  394 (873)
                      +++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++           +.+++.....+  ...+
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l--~~~~  377 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL--AQGC  377 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH--HHHC
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH--HhhC
Confidence            76666543322 2345666666666662222222333345566666666662           34443322111  1111


Q ss_pred             ccccccEEEccCcccCCccccccCC-CCCCCEEeCC----CCccCcc-----ccccccCCCCCCEEEccCcc--CCcccC
Q 045210          395 ASNVLESLDLSNNTLFGLLTNQIGN-FKNLDSLDLS----FNNISGH-----IPLSLGQLSSLRYLDVSTNN--LNGTLS  462 (873)
Q Consensus       395 ~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~  462 (873)
                        ++|++|+++.+.+++..+..++. +++|++|+++    .|.+++.     ++..+..+++|++|+++.|.  +++...
T Consensus       378 --~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          378 --QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             --TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             --ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence              22666666666665555444443 6666666664    4445432     23334456666666665432  333222


Q ss_pred             hhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhc
Q 045210          463 ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKS  542 (873)
Q Consensus       463 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~  542 (873)
                      ......+++|+.|++++|.++..                        .++..+..+++|++|++++|.+++.....+...
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDE------------------------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHH------------------------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHHHHhCccceEeeccCCCCCHH------------------------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            22222345555555555443321                        244555677778888888887765555555666


Q ss_pred             CCCCcEEeccCcccccccC-C-ccccCCCCeEeCCC
Q 045210          543 LSQINYLNLSYNQIFGQIP-D-LNDAAQLETLDLSS  576 (873)
Q Consensus       543 l~~L~~L~l~~n~~~~~~~-~-~~~~~~L~~L~l~~  576 (873)
                      +++|++|++++|+++..-. . ...++.+....+..
T Consensus       512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            7788888888887665321 1 22345555444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.4e-28  Score=263.09  Aligned_cols=225  Identities=21%  Similarity=0.254  Sum_probs=140.6

Q ss_pred             CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCcc
Q 045210          588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQ  667 (873)
Q Consensus       588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  667 (873)
                      ..++.|++++|.++ .+|..    +..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..++++++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~----l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQ----AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR  153 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSC----GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred             cceeEEEccCCCch-hcChh----hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence            45666666666665 34433    233666666666666666 56666666666666666666666 5566666666666


Q ss_pred             EEEccCCcccccCCccccc---------CCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCC
Q 045210          668 ILHLRGNRFSGKIPVSLQN---------CTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLAS  738 (873)
Q Consensus       668 ~L~L~~n~l~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  738 (873)
                      +|++++|++.+.+|..+..         +++|++|++++|+++ .+|..+.. +++|++|++++|++++ +|+.+..+++
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~~-l~~~l~~l~~  230 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPK  230 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCCc-CchhhccCCC
Confidence            6666666666666655543         666666666666666 56665553 6666666666666663 4445666666


Q ss_pred             CCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCC
Q 045210          739 LKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLV  818 (873)
Q Consensus       739 L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~  818 (873)
                      |+.|++++|++.+.+|..++.+++|                                 +.|++++|++.+.+|..+++++
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L---------------------------------~~L~L~~n~~~~~~p~~~~~l~  277 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPL---------------------------------KRLILKDCSNLLTLPLDIHRLT  277 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCC---------------------------------CEEECTTCTTCCBCCTTGGGCT
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCC---------------------------------CEEECCCCCchhhcchhhhcCC
Confidence            6666666666666666655554443                                 5666666666666666666666


Q ss_pred             CCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210          819 GLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       819 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  855 (873)
                      +|++|+|++|++.+.+|..++++++|+.++++.|.+.
T Consensus       278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            6666666666666666666666666666666655443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=6.2e-29  Score=290.47  Aligned_cols=404  Identities=12%  Similarity=0.065  Sum_probs=183.8

Q ss_pred             CCCCCcEEEccCCcCCCCChhhhcC-CC-CCCEEECCCCCC-CC-CCchhhhcCCCcCEEEccCCcCCcc----Cccccc
Q 045210          270 GLVNLVFLDLSTNNFQGAVPDAIQN-ST-SLQHLDLSRNHF-SS-SVPDWFNKFIDLEYLSLSYNELQGS----IPGSLG  341 (873)
Q Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~l~~-l~-~L~~L~l~~n~l-~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~  341 (873)
                      .+++|++|++++|.+++..+..+.. ++ +|++|++++|.. +. .++.....+++|++|++++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4444555555444444333333332 12 244444444431 00 0111122444555555555444333    222233


Q ss_pred             CCCCCCEEeCCCCcCCC----cchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccC---Cccc
Q 045210          342 NLTSIKSLDLSFNRLES----KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLF---GLLT  414 (873)
Q Consensus       342 ~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~  414 (873)
                      .+++|++|++++|.+++    .++..+..+++|++|++++|.+.+.. ..+...     +.|++|+++.+...   +..+
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~-----~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA-----ANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC-----TTCCEEEECBCCCCTTCTTSS
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh-----hHHHhhcccccccccchHHHH
Confidence            44455555555544431    22233344455555555554444321 111111     11445544432211   1222


Q ss_pred             cccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCC
Q 045210          415 NQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPP  494 (873)
Q Consensus       415 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  494 (873)
                      ..+..+++|+.++++++... .+|..+..+++|++|++++|.+++......+..+++|+.|+++ +.+            
T Consensus       264 ~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~------------  329 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVI------------  329 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGG------------
T ss_pred             HHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-Ccc------------
Confidence            34455566666666654322 4555555566666666666654433222234455555555554 111            


Q ss_pred             ccccEEeccccccCCCcchhhhcCCcccEEEccC-----------CCCCcccChhHHhcCCCCcEEeccCcccccccC-C
Q 045210          495 FQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSN-----------SSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-D  562 (873)
Q Consensus       495 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~  562 (873)
                                  ....++.....+++|++|++++           +.+++.....+...+++|++|+++.|.+++..+ .
T Consensus       330 ------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~  397 (592)
T 3ogk_B          330 ------------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES  397 (592)
T ss_dssp             ------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred             ------------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence                        1112334445566677777773           344443333444556677777766666554333 2


Q ss_pred             ccc-cCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcch-hhhhhhcccCCCCceEeccCCc--ccCCCChhhhc
Q 045210          563 LND-AAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLS-RFLCNEMNNSMRLQVLNLGNNT--LSGEIPDCWMN  638 (873)
Q Consensus       563 ~~~-~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~l~~~~~L~~L~Ls~n~--l~~~~p~~l~~  638 (873)
                      +.. +++|+.|+++++.                 ..|.+++... ..+...+.++++|+.|++++|.  +++..+..+..
T Consensus       398 l~~~~~~L~~L~l~~~~-----------------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~  460 (592)
T 3ogk_B          398 IGTYLKNLCDFRLVLLD-----------------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ  460 (592)
T ss_dssp             HHHHCCSCCEEEEEECS-----------------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred             HHhhCCCCcEEEEeecC-----------------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence            222 4445555544221                 1222332110 0111122336667777765433  44433333332


Q ss_pred             -cccCcEEEcCCCcCcc-CCcccccCCCCccEEEccCCccccc-CCcccccCCCCcEEEccCCeecccCChhHHhhcccC
Q 045210          639 -WSFLFFLHLGENDFTG-NLPTSLGTLSSLQILHLRGNRFSGK-IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI  715 (873)
Q Consensus       639 -l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L  715 (873)
                       +++|++|++++|++++ .++..+..+++|++|++++|++++. ++..+..+++|++|++++|++++.-...+...++.+
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l  540 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW  540 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTE
T ss_pred             hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCc
Confidence             5666666666666654 2333445566666666666665533 223334566666666666666544333444345555


Q ss_pred             cEEEccC
Q 045210          716 ILLSLRA  722 (873)
Q Consensus       716 ~~L~L~~  722 (873)
                      ....+..
T Consensus       541 ~~~~~~~  547 (592)
T 3ogk_B          541 NIELIPS  547 (592)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            5444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.7e-27  Score=248.49  Aligned_cols=246  Identities=24%  Similarity=0.279  Sum_probs=128.3

Q ss_pred             EeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccC--CCChhhhccccCcEEEcCC
Q 045210          572 LDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG--EIPDCWMNWSFLFFLHLGE  649 (873)
Q Consensus       572 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~~  649 (873)
                      ++.+++.++......++++++|++++|.++...+..    +.++++|++|++++|.++.  ..|..+..+++|++|++++
T Consensus        12 l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhH----hhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            344444433332233445555555555544322211    2335555555555555542  2244445555555555555


Q ss_pred             CcCccCCcccccCCCCccEEEccCCcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeee-
Q 045210          650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHG-  727 (873)
Q Consensus       650 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-  727 (873)
                      |.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+.+ 
T Consensus        88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCEEGGG
T ss_pred             Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCccccc
Confidence            5555 344445555555555555555554433 34555555555555555555444444432 5555555555555554 


Q ss_pred             eCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCccc
Q 045210          728 FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS  807 (873)
Q Consensus       728 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~  807 (873)
                      .+|..+..+++|+.|++++|.+++..|..++.+++|                                 +.|++++|+++
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------~~L~L~~N~l~  212 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---------------------------------QVLNMSHNNFF  212 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------CEEECTTSCCS
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------------------------------CEEECCCCccC
Confidence            445555555556666666665555545555444433                                 55556666555


Q ss_pred             ccCChhhhcCCCCCeeeCCCCcCcccCCccccCC-CCCCeEeccCCcccc
Q 045210          808 GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM-KSVEALDFSSNRLQG  856 (873)
Q Consensus       808 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g  856 (873)
                      +..+..+..+++|++|++++|.+++..|..++.+ ++|+.|++++|++++
T Consensus       213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            5444455555556666666666655555555555 355566666665554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=5.3e-27  Score=254.56  Aligned_cols=267  Identities=22%  Similarity=0.241  Sum_probs=217.8

Q ss_pred             ecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccc
Q 045210          112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFG  191 (873)
Q Consensus       112 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~  191 (873)
                      .+|..+.  ++|++|++++|.+++. .+..++.+++|++|++++|.+++..|..++++++|++|++++|.++.++...  
T Consensus        45 ~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--  119 (353)
T 2z80_A           45 SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW--  119 (353)
T ss_dssp             SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH--
T ss_pred             ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH--
Confidence            3444443  5899999999999874 4458899999999999999999888889999999999999999998876543  


Q ss_pred             cccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCC-CCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcC
Q 045210          192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC-LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLG  270 (873)
Q Consensus       192 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  270 (873)
                       +.++++|++|++++|.++.++. ...+..+++|++|++++| .+..+.+..|.++++|++|++++|.+. +..+..+..
T Consensus       120 -~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~  196 (353)
T 2z80_A          120 -FKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKS  196 (353)
T ss_dssp             -HTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTT
T ss_pred             -hCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-ccCHHHHhc
Confidence             5788999999999999887653 135678899999999999 578888888999999999999999987 556788889


Q ss_pred             CCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhh---cCCCcCEEEccCCcCCc----cCcccccCC
Q 045210          271 LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN---KFIDLEYLSLSYNELQG----SIPGSLGNL  343 (873)
Q Consensus       271 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~----~~~~~l~~l  343 (873)
                      +++|++|++++|.++......+..+++|++|++++|.+++..+..+.   ....++.++++++.+.+    .+|..++.+
T Consensus       197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l  276 (353)
T 2z80_A          197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI  276 (353)
T ss_dssp             CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred             cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence            99999999999998744344455689999999999998876554443   46778889999888875    467788899


Q ss_pred             CCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhH
Q 045210          344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQ  386 (873)
Q Consensus       344 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  386 (873)
                      ++|++|++++|+++...+..+..+++|++|++++|++.+..+.
T Consensus       277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            9999999999999854444468899999999999999887653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.6e-26  Score=256.75  Aligned_cols=249  Identities=22%  Similarity=0.209  Sum_probs=219.8

Q ss_pred             CCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcC
Q 045210          569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLG  648 (873)
Q Consensus       569 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  648 (873)
                      ...++.++..++......++++++|++++|.+++..+..    +.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456777777776554456788999999999998877665    4558999999999999998888999999999999999


Q ss_pred             CCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210          649 ENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF  728 (873)
Q Consensus       649 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  728 (873)
                      +|++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|...+.+|...+..+++|+.|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            99999777777999999999999999999888889999999999999997666678876666699999999999999864


Q ss_pred             CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210          729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG  808 (873)
Q Consensus       729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  808 (873)
                       | .+..+++|+.|++++|.+++..|..|.++++|                                 +.|++++|++++
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L~L~~n~l~~  256 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL---------------------------------KKLWVMNSQVSL  256 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC---------------------------------CEEECTTSCCCE
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCC---------------------------------CEEEeCCCcCce
Confidence             4 58899999999999999998888888877766                                 899999999999


Q ss_pred             cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210          809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  856 (873)
                      ..|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus       257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            999999999999999999999998888888999999999999999764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-26  Score=243.18  Aligned_cols=256  Identities=21%  Similarity=0.212  Sum_probs=209.0

Q ss_pred             CeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCC
Q 045210          570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE  649 (873)
Q Consensus       570 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~  649 (873)
                      ++++.+++.++......++++++|++++|.+++..+..    +..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHH----cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45666666666544445678888888888887765554    44588999999999999988888999999999999999


Q ss_pred             Cc-CccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210          650 ND-FTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF  728 (873)
Q Consensus       650 n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  728 (873)
                      |+ +....|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+. .+++|+.|++++|++++.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-cCCCccEEECCCCccccc
Confidence            97 7766688899999999999999999988888899999999999999999844334444 489999999999999987


Q ss_pred             CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210          729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG  808 (873)
Q Consensus       729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  808 (873)
                      .+..+..+++|+.|++++|.+++..|..++.+++|                                 +.|++++|++++
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------~~L~l~~n~l~~  215 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL---------------------------------MTLYLFANNLSA  215 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC---------------------------------CEEECCSSCCSC
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccc---------------------------------cEeeCCCCcCCc
Confidence            77778999999999999999998888888776665                                 889999999997


Q ss_pred             cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccccccccccc
Q 045210          809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVN  864 (873)
Q Consensus       809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~  864 (873)
                      ..|..+..+++|+.|++++|++.+..+.. .....++.++.+.+.+.+..|+.+.+
T Consensus       216 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          216 LPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             CCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence            66677899999999999999998765532 22234566678889999999988765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.7e-26  Score=245.30  Aligned_cols=283  Identities=20%  Similarity=0.247  Sum_probs=215.3

Q ss_pred             cEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccC
Q 045210          522 IYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFL  600 (873)
Q Consensus       522 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l  600 (873)
                      +.++.+++.++ .+|..+   .+++++|++++|.+....+ .+..+++|++|+++                     +|.+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~---------------------~n~l   64 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS---------------------SNGL   64 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC---------------------SSCC
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECC---------------------CCcc
Confidence            35666666654 344432   2456666666666654333 24455555555554                     4444


Q ss_pred             cCc--chhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCc-ccccCCCCccEEEccCCccc
Q 045210          601 SGT--LSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLP-TSLGTLSSLQILHLRGNRFS  677 (873)
Q Consensus       601 ~~~--~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~  677 (873)
                      +..  .+..+    ..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.
T Consensus        65 ~~~~~~~~~~----~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  139 (306)
T 2z66_A           65 SFKGCCSQSD----FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  139 (306)
T ss_dssp             CEEEEEEHHH----HSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred             CcccCccccc----ccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC
Confidence            422  23332    23788999999999988 466778889999999999999986554 57888999999999999999


Q ss_pred             ccCCcccccCCCCcEEEccCCeecc-cCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChh
Q 045210          678 GKIPVSLQNCTELRLFDISENEFVG-NIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC  756 (873)
Q Consensus       678 ~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  756 (873)
                      +..+..+..+++|++|++++|.+++ .+|..+.. +++|++|++++|++++..|..+..+++|+.|++++|++++..+..
T Consensus       140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  218 (306)
T 2z66_A          140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP  218 (306)
T ss_dssp             ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred             ccchhhcccCcCCCEEECCCCccccccchhHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence            8888889999999999999999986 46776665 999999999999999988999999999999999999999776666


Q ss_pred             hhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcC-CCCCeeeCCCCcCcccCC
Q 045210          757 INNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNL-VGLQTLKLSHNFFSGRIP  835 (873)
Q Consensus       757 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~ip  835 (873)
                      +..+++|                                 +.||+++|++++..|..+..+ ++|++|++++|.+++..+
T Consensus       219 ~~~l~~L---------------------------------~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          219 YKCLNSL---------------------------------QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             GTTCTTC---------------------------------CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ccCcccC---------------------------------CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            6665554                                 899999999999999999998 499999999999987533


Q ss_pred             c--cccCCCCCCeEeccCCccccccccccccCCCC
Q 045210          836 V--NMGAMKSVEALDFSSNRLQGEIPKNMVNLEFL  868 (873)
Q Consensus       836 ~--~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L  868 (873)
                      .  ...-+...+.+.+..+.+.+..|+.+.+.+.+
T Consensus       266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~  300 (306)
T 2z66_A          266 HQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL  300 (306)
T ss_dssp             GHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGG
T ss_pred             hHHHHHHHHhhhhhhccccccccCCchhhCCceee
Confidence            1  12224455667788899999999988876544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=7.3e-26  Score=253.29  Aligned_cols=249  Identities=21%  Similarity=0.195  Sum_probs=214.9

Q ss_pred             CCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcC
Q 045210          569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLG  648 (873)
Q Consensus       569 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  648 (873)
                      .+.++.++..++......+++++.|++++|++++..+..    +.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456777777776555556788899999999888766654    5568999999999999998888899999999999999


Q ss_pred             CCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210          649 ENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF  728 (873)
Q Consensus       649 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  728 (873)
                      +|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|...+.+|...+..+++|+.|++++|+++. 
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence            9999976667899999999999999999988888899999999999999766667777666669999999999999984 


Q ss_pred             CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210          729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG  808 (873)
Q Consensus       729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  808 (873)
                      +| .+..+++|+.|+|++|++++..|..|..+++|                                 +.|++++|++++
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L~L~~n~l~~  245 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL---------------------------------QKLWMIQSQIQV  245 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC---------------------------------CEEECTTCCCCE
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccC---------------------------------CEEECCCCceeE
Confidence            44 58889999999999999998888888877766                                 899999999999


Q ss_pred             cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210          809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  856 (873)
                      ..|..+.++++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus       246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            889999999999999999999998888888999999999999999853

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.7e-26  Score=250.64  Aligned_cols=278  Identities=18%  Similarity=0.176  Sum_probs=176.8

Q ss_pred             CCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCC---CCCCCcEEEccCccCcCcchhhhhhhcccCCCCce
Q 045210          544 SQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL---IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQV  620 (873)
Q Consensus       544 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~  620 (873)
                      +.....+.+++.++.....+.  ++|++|++++|.+++..+.   .+++|++|++++|.+++..+..    +.++++|++
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~  104 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS----FSSLGSLEH  104 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCE
T ss_pred             CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh----cCCCCCCCE
Confidence            444456666666664433332  3667777777766654432   2456666666666666554443    333666666


Q ss_pred             EeccCCcccCCCChhhhccccCcEEEcCCCcCccCCc-ccccCCCCccEEEccCC-cccccCCcccccCCCCcEEEccCC
Q 045210          621 LNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLP-TSLGTLSSLQILHLRGN-RFSGKIPVSLQNCTELRLFDISEN  698 (873)
Q Consensus       621 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n  698 (873)
                      |++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            6666666665444446666666666666666663222 25666666666666666 355455556666666666666666


Q ss_pred             eecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhhe
Q 045210          699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDAL  778 (873)
Q Consensus       699 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~  778 (873)
                      ++++..|..+.. +++|++|++++|++....+..+..+++|+.|++++|.+++..+..+.....                
T Consensus       185 ~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~----------------  247 (353)
T 2z80_A          185 DLQSYEPKSLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET----------------  247 (353)
T ss_dssp             TCCEECTTTTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C----------------
T ss_pred             CcCccCHHHHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc----------------
Confidence            666555665554 666666666666664332222334566666666666666544433322111                


Q ss_pred             eeecccceeccCCCCccceEEECCCCcccc----cCChhhhcCCCCCeeeCCCCcCcccCCcc-ccCCCCCCeEeccCCc
Q 045210          779 IVYKKKVVKYPIGYPYYLKVLDLSANYFSG----EIPSQVTNLVGLQTLKLSHNFFSGRIPVN-MGAMKSVEALDFSSNR  853 (873)
Q Consensus       779 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~  853 (873)
                                    ...++.++++++.+++    .+|+.++++++|++|++++|+++ .+|.. ++.+++|+.|++++|+
T Consensus       248 --------------~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          248 --------------NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             --------------CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             --------------cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence                          2345677777777765    58889999999999999999999 67776 5899999999999999


Q ss_pred             cccccc
Q 045210          854 LQGEIP  859 (873)
Q Consensus       854 l~g~iP  859 (873)
                      +.+..|
T Consensus       313 ~~~~~~  318 (353)
T 2z80_A          313 WDCSCP  318 (353)
T ss_dssp             BCCCHH
T ss_pred             ccCcCC
Confidence            998876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=4.5e-25  Score=231.69  Aligned_cols=237  Identities=22%  Similarity=0.229  Sum_probs=148.5

Q ss_pred             CCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCC
Q 045210          146 ENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSL  225 (873)
Q Consensus       146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L  225 (873)
                      ++|++|++++|.+++..+..++++++|++|++++|.++.+...                             .+..+++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----------------------------~~~~l~~L   82 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-----------------------------AFTGLALL   82 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----------------------------TTTTCTTC
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-----------------------------hcCCccCC
Confidence            4555555555555554445555555555555555554443222                             12233333


Q ss_pred             CEEEccCCC-CCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECC
Q 045210          226 ETLRFSGCL-LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS  304 (873)
Q Consensus       226 ~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  304 (873)
                      ++|++++|. +..+.+..+.++++|++|++++|.+. +..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  161 (285)
T 1ozn_A           83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH  161 (285)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence            444444443 34444455555666666666666665 3334555666666777777776665555667777888888888


Q ss_pred             CCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchh
Q 045210          305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI  384 (873)
Q Consensus       305 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  384 (873)
                      +|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            88777655556778888888888888888777888888888888888888888777777888888888888888877544


Q ss_pred             hHHHHHhhhcccccccEEEccCcccCCccccccC
Q 045210          385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG  418 (873)
Q Consensus       385 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  418 (873)
                      ..... ..     .++.+....+.+....|..+.
T Consensus       242 ~~~~~-~~-----~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          242 RARPL-WA-----WLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             GGHHH-HH-----HHHHCCSEECCCBEEESGGGT
T ss_pred             CcHHH-HH-----HHHhcccccCccccCCchHhC
Confidence            33211 11     044445555556555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=8.5e-28  Score=255.60  Aligned_cols=249  Identities=19%  Similarity=0.180  Sum_probs=168.6

Q ss_pred             CCCCeEeCCCCCCCCCCCC-CCCCCcEEEccCccC-cCcchhhhh---hhcccCCCCceEeccCCcccCCCChhh--hcc
Q 045210          567 AQLETLDLSSNSLSGPLPL-IPSSLTTLDLSSNFL-SGTLSRFLC---NEMNNSMRLQVLNLGNNTLSGEIPDCW--MNW  639 (873)
Q Consensus       567 ~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l-~~~~~~~~~---~~l~~~~~L~~L~Ls~n~l~~~~p~~l--~~l  639 (873)
                      ++|+.+++++|.+  .+|. .+..++.|++++|.+ .+.+|..+.   ..+.++++|++|++++|++++.+|..+  ..+
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            3455555555555  3332 233355666666665 334444332   011136778888888888887777765  777


Q ss_pred             ccCcEEEcCCCcCccCCcccccCC-----CCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc--CChhH-Hhh
Q 045210          640 SFLFFLHLGENDFTGNLPTSLGTL-----SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN--IPTWI-GER  711 (873)
Q Consensus       640 ~~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--ip~~~-~~~  711 (873)
                      ++|++|++++|++++. |..++.+     ++|++|++++|++.+..|..++.+++|++|++++|++.+.  +|..+ +..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            8888888888888765 6666665     7888888888888877777788888888888888877654  23333 124


Q ss_pred             cccCcEEEccCCeeee--eCC-cccCCCCCCCEEeCCCCccccccCh-hhhhhhcCchhhcchhhhchhheeeeccccee
Q 045210          712 LSGIILLSLRANQFHG--FFP-PELCGLASLKILDLSSNNLTGVIPR-CINNLAGMAKEVLEVDKFFEDALIVYKKKVVK  787 (873)
Q Consensus       712 l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  787 (873)
                      +++|++|++++|++++  .++ ..+..+++|+.|++++|.+++.+|. .+..+                           
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l---------------------------  252 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP---------------------------  252 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC---------------------------
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc---------------------------
Confidence            7788888888887773  222 2334677888888888888876642 22222                           


Q ss_pred             ccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210          788 YPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       788 ~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  856 (873)
                            +.|+.|++++|+++ .+|..+.  ++|++|++++|++++. |. ++.+++|+.|++++|++++
T Consensus       253 ------~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 ------SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             ------TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ------CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence                  33478888888887 7787776  7888888888888865 66 7888888888888888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.9e-25  Score=251.88  Aligned_cols=269  Identities=27%  Similarity=0.354  Sum_probs=185.9

Q ss_pred             cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCcc
Q 045210          520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF  599 (873)
Q Consensus       520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  599 (873)
                      +++.|++++|.+. .+|..+.   ++|++|++++|.++.. |.  .+++|++|++++|.+++ +|..+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC-CC--CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC-CC--cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCc
Confidence            4677777777776 5565443   5777777777777643 33  45677777777777764 44466777778887777


Q ss_pred             CcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCccccc
Q 045210          600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK  679 (873)
Q Consensus       600 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  679 (873)
                      +++..+        .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|++++ 
T Consensus       113 l~~l~~--------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          113 LTHLPA--------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             CCCCCC--------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             CCCCCC--------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            765322        25677888888887774 4443   3778888888887774 443   24677788888888774 


Q ss_pred             CCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhh
Q 045210          680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN  759 (873)
Q Consensus       680 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  759 (873)
                      +|   ..+++|+.|++++|.++ .+|..    +++|+.|++++|.++. +|..   +++|+.|++++|.+++ +|.   .
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp~---~  239 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPV---L  239 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCC---C
T ss_pred             Cc---ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CCC---C
Confidence            44   44677888888888877 45542    5678888888887773 4432   4678888888888774 551   1


Q ss_pred             hhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCcccc
Q 045210          760 LAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMG  839 (873)
Q Consensus       760 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  839 (873)
                                                       +++|+.|++++|+++ .+|.   .+++|++|+|++|.++ .+|..++
T Consensus       240 ---------------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~  281 (622)
T 3g06_A          240 ---------------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI  281 (622)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred             ---------------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh
Confidence                                             233477888888887 5665   5677888888888887 6788888


Q ss_pred             CCCCCCeEeccCCccccccccccccCCC
Q 045210          840 AMKSVEALDFSSNRLQGEIPKNMVNLEF  867 (873)
Q Consensus       840 ~l~~L~~L~ls~N~l~g~iP~~l~~l~~  867 (873)
                      ++++|+.|++++|++++.+|..+..++.
T Consensus       282 ~l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          282 HLSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             GSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             hccccCEEEecCCCCCCcCHHHHHhccc
Confidence            8888888888888888887776665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-26  Score=247.48  Aligned_cols=268  Identities=22%  Similarity=0.195  Sum_probs=164.6

Q ss_pred             ccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCcc
Q 045210          521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF  599 (873)
Q Consensus       521 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  599 (873)
                      ++..+++.+.+. ..+..++..+++|++|++++|.+.+..| .+..+++|++|++++|.+.+                  
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------   72 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------------   72 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------------------
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------------------
Confidence            333444444442 2333344444555556665555555443 44455444444444444332                  


Q ss_pred             CcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCccccc
Q 045210          600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK  679 (873)
Q Consensus       600 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  679 (873)
                         ..+      +..+++|++|++++|++++.     ...++|++|++++|++++..+.   .+++|+.|++++|++++.
T Consensus        73 ---~~~------~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~  135 (317)
T 3o53_A           73 ---TLD------LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML  135 (317)
T ss_dssp             ---EEE------ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSG
T ss_pred             ---chh------hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCc
Confidence               111      23355666666666666532     1236667777777776654333   246677777777777766


Q ss_pred             CCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhh
Q 045210          680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN  759 (873)
Q Consensus       680 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  759 (873)
                      .+..+..+++|++|++++|.+++..|..+...+++|++|++++|++++. | ....+++|+.|++++|++++ +|..+..
T Consensus       136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~  212 (317)
T 3o53_A          136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQS  212 (317)
T ss_dssp             GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred             cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcc
Confidence            6667777777777777777777655555544467777777777777755 2 23347778888888887774 4444655


Q ss_pred             hhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc-ccCCccc
Q 045210          760 LAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS-GRIPVNM  838 (873)
Q Consensus       760 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l  838 (873)
                      +++|                                 +.|++++|+++ .+|..+..+++|+.|++++|.++ +.+|..+
T Consensus       213 l~~L---------------------------------~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          213 AAGV---------------------------------TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             GTTC---------------------------------SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             cCcc---------------------------------cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            5544                                 67888888877 46777777788888888888887 6677777


Q ss_pred             cCCCCCCeEecc-CCccccccccc
Q 045210          839 GAMKSVEALDFS-SNRLQGEIPKN  861 (873)
Q Consensus       839 ~~l~~L~~L~ls-~N~l~g~iP~~  861 (873)
                      +.+++|+.++++ .+.+.|..|..
T Consensus       259 ~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          259 SKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             HTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             hccccceEEECCCchhccCCchhc
Confidence            777777777777 33555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=8.1e-25  Score=245.70  Aligned_cols=242  Identities=21%  Similarity=0.251  Sum_probs=210.9

Q ss_pred             CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210          589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI  668 (873)
Q Consensus       589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  668 (873)
                      ....++.++..++. +|..+      .++++.|++++|++++..|..|.++++|+.|++++|++++..|..|.++++|++
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  127 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGI------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT  127 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCC------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCcEEEECCCCcCc-cCCCC------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence            45678888887764 44332      367999999999999999999999999999999999999888899999999999


Q ss_pred             EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeC-CcccCCCCCCCEEeCCCC
Q 045210          669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFF-PPELCGLASLKILDLSSN  747 (873)
Q Consensus       669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N  747 (873)
                      |+|++|++++..+..+..+++|++|++++|++. .+|...+..+++|+.|++++|+..+.+ +..+..+++|+.|++++|
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            999999999888888999999999999999998 566655556999999999996544444 456889999999999999


Q ss_pred             ccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCC
Q 045210          748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSH  827 (873)
Q Consensus       748 ~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~  827 (873)
                      .+++ +| .+..+.                                 +|+.|++++|++++..|..+.++++|+.|++++
T Consensus       207 ~l~~-~~-~~~~l~---------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          207 NIKD-MP-NLTPLV---------------------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN  251 (452)
T ss_dssp             CCSS-CC-CCTTCT---------------------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred             cccc-cc-cccccc---------------------------------cccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence            9984 44 244333                                 458999999999999999999999999999999


Q ss_pred             CcCcccCCccccCCCCCCeEeccCCccccccccccccCCCCCcccC
Q 045210          828 NFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI  873 (873)
Q Consensus       828 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l  873 (873)
                      |.+++..|..+..+++|+.||+++|++++..|..+..++.|+.|++
T Consensus       252 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred             CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence            9999999999999999999999999999877778899999998875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=243.71  Aligned_cols=242  Identities=21%  Similarity=0.243  Sum_probs=210.6

Q ss_pred             CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210          589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI  668 (873)
Q Consensus       589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  668 (873)
                      ....++.++..++. +|..+      .++++.|++++|++.+..+..|.++++|++|++++|++++..+..|.++++|++
T Consensus        44 ~~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~  116 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-VPDGI------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT  116 (440)
T ss_dssp             TSCEEECCSCCCSS-CCSCC------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred             CCCEEEeCCCCcCc-CCCCC------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence            45678888888764 44332      367999999999999888899999999999999999999888889999999999


Q ss_pred             EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeC-CcccCCCCCCCEEeCCCC
Q 045210          669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFF-PPELCGLASLKILDLSSN  747 (873)
Q Consensus       669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N  747 (873)
                      |+|++|++++..+..|..+++|++|++++|++. .+|...+..+++|+.|++++|+..+.+ +..+..+++|+.|++++|
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            999999999777778999999999999999998 455544446999999999996544444 457899999999999999


Q ss_pred             ccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCC
Q 045210          748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSH  827 (873)
Q Consensus       748 ~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~  827 (873)
                      .++ .+|. +..+.                                 +|+.|||++|++++..|..+.++++|+.|+|++
T Consensus       196 ~l~-~~~~-~~~l~---------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          196 NLR-EIPN-LTPLI---------------------------------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             CCS-SCCC-CTTCS---------------------------------SCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cCc-cccc-cCCCc---------------------------------ccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence            998 5553 44333                                 458999999999999999999999999999999


Q ss_pred             CcCcccCCccccCCCCCCeEeccCCccccccccccccCCCCCcccC
Q 045210          828 NFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI  873 (873)
Q Consensus       828 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l  873 (873)
                      |.+++..|..|..+++|+.||+++|++++..|..+..++.|+.|++
T Consensus       241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL  286 (440)
T ss_dssp             CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred             CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence            9999999999999999999999999999877788899999998875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.2e-26  Score=246.70  Aligned_cols=238  Identities=23%  Similarity=0.284  Sum_probs=162.7

Q ss_pred             ecccCccCCCCCCeecCCCCCCCCCCCCcccc-------CCCCCCEEeccCCcCCCCCcccc--cCCCCCcEEECCCCCC
Q 045210          112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLG-------SLENLMYLNISRAGFVGIIPHQI--GNLSNLQFLDLRPNYL  182 (873)
Q Consensus       112 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l  182 (873)
                      .+|..+...  |++|+|++|.+....+|..+.       .+++|++|++++|.+++.+|..+  +.+++|++|++++|.+
T Consensus        56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  133 (312)
T 1wwl_A           56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW  133 (312)
T ss_dssp             CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred             ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence            344444333  666666666654333555444       56666666666666666666554  5566666666666655


Q ss_pred             CCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCC
Q 045210          183 GGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADS  262 (873)
Q Consensus       183 ~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  262 (873)
                      +.++ ..++.+.                        ...+++|++|++++|++.+..+..|+++++|++|++++|++. +
T Consensus       134 ~~~~-~~~~~l~------------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~  187 (312)
T 1wwl_A          134 ATRD-AWLAELQ------------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-G  187 (312)
T ss_dssp             SSSS-SHHHHHH------------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-H
T ss_pred             cchh-HHHHHHH------------------------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-c
Confidence            5442 1111000                        011378888888888888888888889999999999999875 3


Q ss_pred             c--hhHhh--cCCCCCcEEEccCCcCCC--CCh-hhhcCCCCCCEEECCCCCCCCCCc-hhhhcCCCcCEEEccCCcCCc
Q 045210          263 S--IVNQV--LGLVNLVFLDLSTNNFQG--AVP-DAIQNSTSLQHLDLSRNHFSSSVP-DWFNKFIDLEYLSLSYNELQG  334 (873)
Q Consensus       263 ~--~~~~~--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~  334 (873)
                      .  ++..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ 
T Consensus       188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-  266 (312)
T 1wwl_A          188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-  266 (312)
T ss_dssp             HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence            3  34444  788899999999998873  222 344678899999999998887664 45566788999999999888 


Q ss_pred             cCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 045210          335 SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ  382 (873)
Q Consensus       335 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  382 (873)
                      .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6777666  7889999999988876 55 7788877777777777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.9e-26  Score=269.65  Aligned_cols=435  Identities=14%  Similarity=0.107  Sum_probs=200.4

Q ss_pred             cccCCCCCccEEEcCCCCCC-CC-------------chhHhhcCCCCCcEEEccCCcCCCCChhhhc-CCCCCCEEECCC
Q 045210          241 LSFANFSSLVTLDISDNQFA-DS-------------SIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ-NSTSLQHLDLSR  305 (873)
Q Consensus       241 ~~l~~l~~L~~L~L~~n~l~-~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~  305 (873)
                      ..+..+++|++|+++++... +.             .+......+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            34556677777777766421 00             0112223455666666666665554444443 456666666666


Q ss_pred             C-CCCCC-CchhhhcCCCcCEEEccCCcCCccCccccc----CCCCCCEEeCCCCc--CCCc-chhhhhcCCCCCEEEcc
Q 045210          306 N-HFSSS-VPDWFNKFIDLEYLSLSYNELQGSIPGSLG----NLTSIKSLDLSFNR--LESK-IPRAFKRLRHLRSVNLS  376 (873)
Q Consensus       306 n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~L~  376 (873)
                      | .++.. ++..+..+++|++|++++|.+++..+.++.    .+++|++|++++|.  +... ++.....+++|++|+++
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            5 33211 233334566666666666665543333332    44566666666554  2111 11222344556666665


Q ss_pred             CCcCcchhhHHHHHhhhcccccccEEEccCcc-------cCCccccccCCCCCCCEE-eCCCCccCccccccccCCCCCC
Q 045210          377 GNKLSQEISQVLDMFSACASNVLESLDLSNNT-------LFGLLTNQIGNFKNLDSL-DLSFNNISGHIPLSLGQLSSLR  448 (873)
Q Consensus       377 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~  448 (873)
                      +|...+..+..+.   .+  +.|++|++..+.       +.+ ++..+.++++|+.+ .+.+... +.++..+..+++|+
T Consensus       220 ~~~~~~~l~~~~~---~~--~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~  292 (594)
T 2p1m_B          220 RAVPLEKLATLLQ---RA--PQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLT  292 (594)
T ss_dssp             TTSCHHHHHHHHH---HC--TTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCC
T ss_pred             CCCcHHHHHHHHh---cC--CcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCC
Confidence            5522111222211   11  115555543332       111 12234444555544 2222211 12333333344455


Q ss_pred             EEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccC
Q 045210          449 YLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSN  528 (873)
Q Consensus       449 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  528 (873)
                      +|++++|.+++......+..+++|+.|+++                         +|.....++.....+++|++|++++
T Consensus       293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~-------------------------~~~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVL-------------------------DYIEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             EEECTTCCCCHHHHHHHHTTCTTCCEEEEE-------------------------GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             EEEccCCCCCHHHHHHHHhcCCCcCEEeCc-------------------------CccCHHHHHHHHHhCCCCCEEEEec
Confidence            555554443322111122333444444333                         3311111223333456666666632


Q ss_pred             ---------CCCCcccChhHHhcCCCCcEEeccCcccccccC-Ccc-ccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccC
Q 045210          529 ---------SSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLN-DAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSS  597 (873)
Q Consensus       529 ---------n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  597 (873)
                               +.+++.....+...+++|++|.+..|.+++... .+. .+++|+.|+++.+...+               .
T Consensus       348 ~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~---------------~  412 (594)
T 2p1m_B          348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA---------------P  412 (594)
T ss_dssp             SCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC---------------C
T ss_pred             CcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC---------------c
Confidence                     233333333333445566666555555544322 221 24445555444110000               0


Q ss_pred             ccCcCcc-hhhhhhhcccCCCCceEeccCCcccCCCChhhhc-cccCcEEEcCCCcCccCCcccc-cCCCCccEEEccCC
Q 045210          598 NFLSGTL-SRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN-WSFLFFLHLGENDFTGNLPTSL-GTLSSLQILHLRGN  674 (873)
Q Consensus       598 n~l~~~~-~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n  674 (873)
                      +.+++.. ...+...+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|
T Consensus       413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred             ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence            1222110 011111233466777777766 555444444444 6677777777777665444333 45677777777777


Q ss_pred             cccccCCc-ccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCC
Q 045210          675 RFSGKIPV-SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRAN  723 (873)
Q Consensus       675 ~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n  723 (873)
                      ++++.... ....+++|+.|++++|+++......+...++.++...+..+
T Consensus       492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            77544333 33446777777777777654434444344566655555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=4.2e-24  Score=245.35  Aligned_cols=248  Identities=27%  Similarity=0.341  Sum_probs=185.5

Q ss_pred             CcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCc
Q 045210          519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN  598 (873)
Q Consensus       519 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  598 (873)
                      ++|+.|++++|.+. .+|.    .+++|++|++++|++++. |.  .+++|++|++++|.+++. |..+++|+.|++++|
T Consensus        61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~l~~l-~~~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV--LPPGLLELSIFSNPLTHL-PALPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC--CCTTCCEEEECSCCCCCC-CCCCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC--CCCCCCEEECcCCcCCCC-CCCCCCcCEEECCCC
Confidence            56777777777776 4554    356778888888777643 33  567788888888877763 336778888888888


Q ss_pred             cCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccc
Q 045210          599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG  678 (873)
Q Consensus       599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  678 (873)
                      ++++ +|..       +++|++|++++|++++ +|.   ..++|+.|++++|++++ +|   ..+++|+.|++++|++++
T Consensus       132 ~l~~-lp~~-------l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~  195 (622)
T 3g06_A          132 QLTS-LPVL-------PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS  195 (622)
T ss_dssp             CCSC-CCCC-------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred             CCCc-CCCC-------CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence            8776 3322       4778888888888874 343   34678888888888885 55   456888889999988874


Q ss_pred             cCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhh
Q 045210          679 KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN  758 (873)
Q Consensus       679 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  758 (873)
                       +|..   .++|+.|++++|.++ .+|..    +++|+.|++++|++++ +|   ..+++|+.|++++|.++ .+|.   
T Consensus       196 -l~~~---~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---  258 (622)
T 3g06_A          196 -LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---  258 (622)
T ss_dssp             -CCCC---CTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---
T ss_pred             -CCCc---cchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---
Confidence             4443   478888999999888 66642    5788999999998886 55   45688999999999888 5664   


Q ss_pred             hhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccc
Q 045210          759 NLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNM  838 (873)
Q Consensus       759 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  838 (873)
                      .                                 +++|+.|++++|+++ .+|..+.++++|+.|+|++|.+++.+|..+
T Consensus       259 ~---------------------------------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          259 L---------------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             C---------------------------------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             c---------------------------------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            1                                 234588999999998 789889999999999999999998888876


Q ss_pred             cCCC
Q 045210          839 GAMK  842 (873)
Q Consensus       839 ~~l~  842 (873)
                      ..++
T Consensus       305 ~~L~  308 (622)
T 3g06_A          305 REIT  308 (622)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            6554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.2e-25  Score=239.47  Aligned_cols=248  Identities=21%  Similarity=0.221  Sum_probs=202.8

Q ss_pred             eccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCC
Q 045210          501 GLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLS  580 (873)
Q Consensus       501 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~  580 (873)
                      +++.+.+.......+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc
Confidence            334444333344555667789999999998875 444556778899999999999887665 888889999999999887


Q ss_pred             CCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccc
Q 045210          581 GPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSL  660 (873)
Q Consensus       581 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l  660 (873)
                      +..+  .++|++|++++|.+++..+..       +++|++|++++|++++..+..+..+++|++|++++|++++..|..+
T Consensus        94 ~l~~--~~~L~~L~l~~n~l~~~~~~~-------~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A           94 ELLV--GPSIETLHAANNNISRVSCSR-------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             EEEE--CTTCCEEECCSSCCSEEEECC-------CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             cccC--CCCcCEEECCCCccCCcCccc-------cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence            6443  378999999999998765442       6789999999999998888889999999999999999998777776


Q ss_pred             c-CCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCC
Q 045210          661 G-TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL  739 (873)
Q Consensus       661 ~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  739 (873)
                      . .+++|++|++++|++++. + ....+++|++|++++|+++ .+|..+.. +++|+.|++++|+++ .+|..+..+++|
T Consensus       165 ~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~l~~L  239 (317)
T 3o53_A          165 AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNL  239 (317)
T ss_dssp             GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGG-GTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred             hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcc-cCcccEEECcCCccc-chhhHhhcCCCC
Confidence            4 789999999999999866 3 2345899999999999999 46666664 999999999999999 468889999999


Q ss_pred             CEEeCCCCccc-cccChhhhhhhcCc
Q 045210          740 KILDLSSNNLT-GVIPRCINNLAGMA  764 (873)
Q Consensus       740 ~~L~Ls~N~l~-~~ip~~l~~l~~L~  764 (873)
                      +.|++++|+++ +.+|..++.++.|.
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             CEEEccCCCccCcCHHHHHhccccce
Confidence            99999999999 77888887777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2e-25  Score=251.79  Aligned_cols=206  Identities=22%  Similarity=0.182  Sum_probs=94.3

Q ss_pred             CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEE
Q 045210          615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD  694 (873)
Q Consensus       615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  694 (873)
                      +++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|+.|++++|.+++..+.   .+++|+.|+
T Consensus        57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~  126 (487)
T 3oja_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIY  126 (487)
T ss_dssp             CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEE
T ss_pred             CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEE
Confidence            4444444454444443333  4444445555555554442211     14455555555554433332   234445555


Q ss_pred             ccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccC-CCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhh
Q 045210          695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELC-GLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKF  773 (873)
Q Consensus       695 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~  773 (873)
                      +++|.+++..|..+.. +++|+.|++++|.+++.+|..+. .+++|+.|+|++|.+++..+.  ..              
T Consensus       127 L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~--------------  189 (487)
T 3oja_A          127 LANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VV--------------  189 (487)
T ss_dssp             CCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CC--------------
T ss_pred             CCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--cc--------------
Confidence            5555554433433332 45555555555555544444443 345555555555555433111  01              


Q ss_pred             chhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCc
Q 045210          774 FEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNR  853 (873)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~  853 (873)
                                         ++.|+.|||++|.+++ +|..++.+++|+.|++++|.+++ +|..++.+++|+.|++++|+
T Consensus       190 -------------------l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          190 -------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             -------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCC
T ss_pred             -------------------CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCC
Confidence                               1223455555555553 33335555555555555555553 44445555555555555555


Q ss_pred             cc-cccccccccCCCC
Q 045210          854 LQ-GEIPKNMVNLEFL  868 (873)
Q Consensus       854 l~-g~iP~~l~~l~~L  868 (873)
                      +. +.+|..+..++.|
T Consensus       249 l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          249 FHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             BCHHHHHHHHTTCHHH
T ss_pred             CcCcchHHHHHhCCCC
Confidence            54 4444444444333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=9.1e-27  Score=272.29  Aligned_cols=430  Identities=14%  Similarity=0.075  Sum_probs=219.3

Q ss_pred             cEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCC---CC------------hhhhcCCCCCCEEECCCCCCCCCCch
Q 045210          250 VTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG---AV------------PDAIQNSTSLQHLDLSRNHFSSSVPD  314 (873)
Q Consensus       250 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~------------~~~l~~l~~L~~L~l~~n~l~~~~p~  314 (873)
                      +.+++.++...  .....+..+++|++|+++++....   ..            +.....+++|++|++++|.+++..+.
T Consensus        46 ~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~  123 (594)
T 2p1m_B           46 RKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE  123 (594)
T ss_dssp             CEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred             eEEeecccccc--CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence            35566554332  223455667788888888764221   11            11223456666666666665554444


Q ss_pred             hhh-cCCCcCEEEccCC-cCCcc-CcccccCCCCCCEEeCCCCcCCCcchhhhh----cCCCCCEEEccCCcCcchhhHH
Q 045210          315 WFN-KFIDLEYLSLSYN-ELQGS-IPGSLGNLTSIKSLDLSFNRLESKIPRAFK----RLRHLRSVNLSGNKLSQEISQV  387 (873)
Q Consensus       315 ~l~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~L~~n~l~~~~~~~  387 (873)
                      .+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+.    .+++|++|++++|. .......
T Consensus       124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~  202 (594)
T 2p1m_B          124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSA  202 (594)
T ss_dssp             HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHH
T ss_pred             HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHH
Confidence            444 4666666666666 33321 233334566666666666665544333333    33455555555554 1111111


Q ss_pred             HHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCcc-------CCcc
Q 045210          388 LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNN-------LNGT  460 (873)
Q Consensus       388 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~  460 (873)
                      +.                         ..+..+++|++|++++|...+.++..+..+++|++|++..+.       +.+ 
T Consensus       203 l~-------------------------~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-  256 (594)
T 2p1m_B          203 LE-------------------------RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-  256 (594)
T ss_dssp             HH-------------------------HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-
T ss_pred             HH-------------------------HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-
Confidence            11                         111223444444444442111234444444444444433321       111 


Q ss_pred             cChhhhhcccccceEE-cCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhH
Q 045210          461 LSENHFANLTKLVGFD-ASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRL  539 (873)
Q Consensus       461 ~~~~~~~~l~~L~~L~-l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~  539 (873)
                      ++. .+.++++|+.+. +.+.                          ....++..+..+++|++|++++|.+.+.....+
T Consensus       257 l~~-~l~~~~~L~~Ls~~~~~--------------------------~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~  309 (594)
T 2p1m_B          257 LSV-ALSGCKELRCLSGFWDA--------------------------VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL  309 (594)
T ss_dssp             HHH-HHHTCTTCCEEECCBTC--------------------------CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred             HHH-HHhcCCCcccccCCccc--------------------------chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence            111 234444444441 1110                          001234444456677777777777655444445


Q ss_pred             HhcCCCCcEEeccCcccccccCC-ccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCC
Q 045210          540 VKSLSQINYLNLSYNQIFGQIPD-LNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRL  618 (873)
Q Consensus       540 ~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L  618 (873)
                      ...+++|++|++++|.....++. ...+++|++|++++|.-.|            ....+.+++.....+.   ..+++|
T Consensus       310 ~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g------------~~~~~~l~~~~l~~l~---~~~~~L  374 (594)
T 2p1m_B          310 LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV------------MEPNVALTEQGLVSVS---MGCPKL  374 (594)
T ss_dssp             HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTC------------SSCSSCCCHHHHHHHH---HHCTTC
T ss_pred             HhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccc------------cccCCCCCHHHHHHHH---HhchhH
Confidence            55667777777777621112222 2235666666665432110            0112222222212211   125667


Q ss_pred             ceEeccCCcccCCCChhhh-ccccCcEEEcC--C----CcCccC-----CcccccCCCCccEEEccCCcccccCCccccc
Q 045210          619 QVLNLGNNTLSGEIPDCWM-NWSFLFFLHLG--E----NDFTGN-----LPTSLGTLSSLQILHLRGNRFSGKIPVSLQN  686 (873)
Q Consensus       619 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~l~--~----n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  686 (873)
                      +.|.++.|.+++..+..+. .+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++..+..+..
T Consensus       375 ~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~  453 (594)
T 2p1m_B          375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT  453 (594)
T ss_dssp             CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred             HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence            7776666666654444443 46777777777  3    344411     122245667788888866 555555555554


Q ss_pred             -CCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCc-ccCCCCCCCEEeCCCCcccc
Q 045210          687 -CTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPP-ELCGLASLKILDLSSNNLTG  751 (873)
Q Consensus       687 -l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~  751 (873)
                       +++|+.|++++|.+++..+..+...+++|+.|++++|++++..+. ....+++|+.|++++|+++.
T Consensus       454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence             777888888888776655555544578888888888877544332 33456788888888887753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=6.6e-23  Score=212.97  Aligned_cols=181  Identities=25%  Similarity=0.303  Sum_probs=80.8

Q ss_pred             CCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCC
Q 045210          146 ENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSL  225 (873)
Q Consensus       146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L  225 (873)
                      +++++|++++|.+.+..+..++++++|++|++++|.++.++...                             +..+++|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~-----------------------------~~~l~~L   87 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----------------------------FKELKNL   87 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT-----------------------------TSSCTTC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh-----------------------------hcCCCCC
Confidence            45556666666555554455555556666665555554443321                             1223333


Q ss_pred             CEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCC
Q 045210          226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSR  305 (873)
Q Consensus       226 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  305 (873)
                      ++|++++|.+.++.+..|.++++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence            33333333333333334444444444444444443 22222233344444444444444433333344444444444444


Q ss_pred             CCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcC
Q 045210          306 NHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL  356 (873)
Q Consensus       306 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  356 (873)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            444443333344444444444444444433333344444444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.7e-23  Score=218.44  Aligned_cols=211  Identities=22%  Similarity=0.229  Sum_probs=137.5

Q ss_pred             CCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEcc
Q 045210          617 RLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS  696 (873)
Q Consensus       617 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  696 (873)
                      ++++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45556666666555555556666666666666666665555556666666666666666666666666666666666666


Q ss_pred             CCeecccCChhHHhhcccCcEEEccCCeeeee-CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210          697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGF-FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE  775 (873)
Q Consensus       697 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~  775 (873)
                      +|.+.+..+..+. .+++|++|++++|++.+. +|..+..+++|+.|++++|++++..+..+..+..+.           
T Consensus       109 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-----------  176 (276)
T 2z62_A          109 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-----------  176 (276)
T ss_dssp             TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred             CCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence            6666643333333 366677777777776653 466777777788888888877766666666666652           


Q ss_pred             hheeeecccceeccCCCCccce-EEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcc
Q 045210          776 DALIVYKKKVVKYPIGYPYYLK-VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL  854 (873)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~L~-~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  854 (873)
                                         .+. .|++++|.+++..+ ......+|+.|++++|.+++..+..++.+++|+.|++++|++
T Consensus       177 -------------------~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          177 -------------------LLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             -------------------TCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             -------------------ccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence                               112 67888888875433 344445788888888888766555667788888888888888


Q ss_pred             ccccc
Q 045210          855 QGEIP  859 (873)
Q Consensus       855 ~g~iP  859 (873)
                      .+..|
T Consensus       237 ~c~c~  241 (276)
T 2z62_A          237 DCSCP  241 (276)
T ss_dssp             CCCTT
T ss_pred             cccCC
Confidence            77654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.6e-24  Score=241.48  Aligned_cols=222  Identities=21%  Similarity=0.191  Sum_probs=192.2

Q ss_pred             chhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcc
Q 045210          604 LSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS  683 (873)
Q Consensus       604 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  683 (873)
                      +|..+......+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|  +..+++|++|++++|++++..+  
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~--   97 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV--   97 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE--
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC--
Confidence            344544444456689999999999999888999999999999999999997666  8999999999999999985443  


Q ss_pred             cccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhh-hhhc
Q 045210          684 LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN-NLAG  762 (873)
Q Consensus       684 l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~  762 (873)
                         .++|++|++++|.+++..+.    .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+. .++.
T Consensus        98 ---~~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~  170 (487)
T 3oja_A           98 ---GPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (487)
T ss_dssp             ---CTTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             ---CCCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence               38999999999999965443    278999999999999999999999999999999999999998888775 5555


Q ss_pred             CchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCC
Q 045210          763 MAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMK  842 (873)
Q Consensus       763 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  842 (873)
                      |                                 +.|+|++|.+++..+  ...+++|++|+|++|.+++. |..++.++
T Consensus       171 L---------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~  214 (487)
T 3oja_A          171 L---------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAA  214 (487)
T ss_dssp             C---------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGT
T ss_pred             c---------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCC
Confidence            4                                 899999999997633  45699999999999999974 55589999


Q ss_pred             CCCeEeccCCccccccccccccCCCCCcccC
Q 045210          843 SVEALDFSSNRLQGEIPKNMVNLEFLEIFNI  873 (873)
Q Consensus       843 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l  873 (873)
                      +|+.||+++|++++ +|..+..++.|+.|++
T Consensus       215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred             CccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence            99999999999996 8989999999998875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=5.3e-23  Score=214.73  Aligned_cols=224  Identities=23%  Similarity=0.223  Sum_probs=184.4

Q ss_pred             eCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcC
Q 045210          573 DLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDF  652 (873)
Q Consensus       573 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l  652 (873)
                      +..+..+.......++++++|++++|.+++..+..    +.++++|++|++++|++++..+..+.++++|++|++++|++
T Consensus        13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             ECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTT----TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EecCCCccccCCCCCCCccEEECCCCcccccCHhH----hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            33444444333334667888888888887765544    45589999999999999988888899999999999999999


Q ss_pred             ccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecc-cCChhHHhhcccCcEEEccCCeeeeeCCc
Q 045210          653 TGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG-NIPTWIGERLSGIILLSLRANQFHGFFPP  731 (873)
Q Consensus       653 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~  731 (873)
                      ++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+.+ .+|..+.. +++|+.|++++|++++..+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-CCCCCEEECCCCCCCcCCHH
Confidence            98888889999999999999999998877789999999999999999986 36888875 99999999999999988877


Q ss_pred             ccCCCCCCC----EEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCccc
Q 045210          732 ELCGLASLK----ILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS  807 (873)
Q Consensus       732 ~l~~l~~L~----~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~  807 (873)
                      .+..+++|+    .|++++|++++..+..+..                                  .+|+.|++++|+++
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~----------------------------------~~L~~L~L~~n~l~  213 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE----------------------------------IRLKELALDTNQLK  213 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS----------------------------------CCEEEEECCSSCCS
T ss_pred             HhhhhhhccccceeeecCCCcccccCccccCC----------------------------------CcccEEECCCCcee
Confidence            777777777    8999999998655443321                                  23589999999999


Q ss_pred             ccCChhhhcCCCCCeeeCCCCcCcccCC
Q 045210          808 GEIPSQVTNLVGLQTLKLSHNFFSGRIP  835 (873)
Q Consensus       808 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  835 (873)
                      +..+..+.++++|++|++++|++++..|
T Consensus       214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          214 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ecCHhHhcccccccEEEccCCcccccCC
Confidence            7666667999999999999999998765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2e-23  Score=217.03  Aligned_cols=208  Identities=21%  Similarity=0.242  Sum_probs=150.2

Q ss_pred             CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEE
Q 045210          615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD  694 (873)
Q Consensus       615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  694 (873)
                      +++|+.|++++|.+.. + ..+..+++|++|++++|++.+ + ..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            5667777777777653 2 246777777777777777775 2 3577777788888888877776666677777888888


Q ss_pred             ccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhc
Q 045210          695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFF  774 (873)
Q Consensus       695 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~  774 (873)
                      +++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|           
T Consensus       116 L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  183 (272)
T 3rfs_A          116 LVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL-----------  183 (272)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred             CCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC-----------
Confidence            888877743333333 37778888888887776666667778888888888888876666556655554           


Q ss_pred             hhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcc
Q 045210          775 EDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL  854 (873)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  854 (873)
                                            +.|++++|++++..|..++++++|+.|++++|.+.+..|       +|+.++++.|.+
T Consensus       184 ----------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~  234 (272)
T 3rfs_A          184 ----------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKH  234 (272)
T ss_dssp             ----------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHT
T ss_pred             ----------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhC
Confidence                                  778888888887666667788888888888887775543       577778888888


Q ss_pred             ccccccccccCCC
Q 045210          855 QGEIPKNMVNLEF  867 (873)
Q Consensus       855 ~g~iP~~l~~l~~  867 (873)
                      +|.+|..++++..
T Consensus       235 ~g~ip~~~~~~~~  247 (272)
T 3rfs_A          235 SGVVRNSAGSVAP  247 (272)
T ss_dssp             GGGBBCTTSCBCG
T ss_pred             CCcccCcccccCC
Confidence            8888877776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.9e-22  Score=208.16  Aligned_cols=203  Identities=20%  Similarity=0.254  Sum_probs=115.8

Q ss_pred             CceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210          618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE  697 (873)
Q Consensus       618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  697 (873)
                      .+.+++++++++ .+|..+.  +++++|++++|++++..+..|.++++|++|++++|+++...+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            445555555555 2343332  3455566666665544444555566666666666665544444455566666666666


Q ss_pred             CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhh
Q 045210          698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDA  777 (873)
Q Consensus       698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~  777 (873)
                      |++. .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..++.+++|              
T Consensus        95 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------  159 (270)
T 2o6q_A           95 NKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL--------------  159 (270)
T ss_dssp             SCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             CcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc--------------
Confidence            6655 3443333335666666666666665555556666666666666666664443344444443              


Q ss_pred             eeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccc
Q 045210          778 LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGE  857 (873)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  857 (873)
                                         +.|++++|++++..|..+.++++|++|++++|.+++..+..++.+++|+.|++++|++...
T Consensus       160 -------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          160 -------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             -------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             -------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence                               5666666666654445566666666666666666654445566666666666666666543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=7e-24  Score=233.03  Aligned_cols=238  Identities=20%  Similarity=0.292  Sum_probs=179.3

Q ss_pred             CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCC---cccCCCChhh-------hccccCcEEEcCCCcCcc---
Q 045210          588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN---TLSGEIPDCW-------MNWSFLFFLHLGENDFTG---  654 (873)
Q Consensus       588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~l~~n~l~~---  654 (873)
                      ++|++|++++|.+++..+..++..+..+++|++|++++|   ++.+.+|..+       ..+++|++|++++|++.+   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            345555666666666555666666677888888888875   4445556554       677888888888888886   


Q ss_pred             -CCcccccCCCCccEEEccCCcccccCCcccc----cC---------CCCcEEEccCCeec-ccCCh---hHHhhcccCc
Q 045210          655 -NLPTSLGTLSSLQILHLRGNRFSGKIPVSLQ----NC---------TELRLFDISENEFV-GNIPT---WIGERLSGII  716 (873)
Q Consensus       655 -~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l---------~~L~~L~Ls~n~l~-~~ip~---~~~~~l~~L~  716 (873)
                       .+|..+..+++|++|+|++|.++...+..+.    .+         ++|++|++++|+++ +.+|.   .+. .+++|+
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~  190 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLH  190 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCC
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcC
Confidence             4667778888888888888888754444333    33         88999999999887 44552   333 478999


Q ss_pred             EEEccCCeeee-----eCCcccCCCCCCCEEeCCCCccc----cccChhhhhhhcCchhhcchhhhchhheeeeccccee
Q 045210          717 LLSLRANQFHG-----FFPPELCGLASLKILDLSSNNLT----GVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVK  787 (873)
Q Consensus       717 ~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  787 (873)
                      .|++++|++..     ..|..+..+++|+.|+|++|.++    +.+|..+..+++|                        
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L------------------------  246 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL------------------------  246 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC------------------------
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc------------------------
Confidence            99999998873     34447888899999999999986    5667666655554                        


Q ss_pred             ccCCCCccceEEECCCCccccc----CChhhh--cCCCCCeeeCCCCcCcc----cCCccc-cCCCCCCeEeccCCcccc
Q 045210          788 YPIGYPYYLKVLDLSANYFSGE----IPSQVT--NLVGLQTLKLSHNFFSG----RIPVNM-GAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       788 ~~~~~~~~L~~L~ls~n~l~~~----ip~~l~--~l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g  856 (873)
                               +.|+|++|.+++.    +|..+.  .+++|++|+|++|.+++    .+|..+ .++++|+.|++++|++++
T Consensus       247 ---------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          247 ---------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             ---------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ---------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence                     8899999999876    677774  48999999999999998    588887 668999999999999998


Q ss_pred             ccc
Q 045210          857 EIP  859 (873)
Q Consensus       857 ~iP  859 (873)
                      ..|
T Consensus       318 ~~~  320 (386)
T 2ca6_A          318 EDD  320 (386)
T ss_dssp             TSH
T ss_pred             chh
Confidence            775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=4.2e-22  Score=208.54  Aligned_cols=203  Identities=20%  Similarity=0.192  Sum_probs=150.1

Q ss_pred             ccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcE
Q 045210          613 NNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL  692 (873)
Q Consensus       613 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  692 (873)
                      ++++++++++++++.++ .+|..+.  +.++.|++++|++++..|..+..+++|+.|++++|++++..+.  +.+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            34667777777777776 4454443  5677888888887776677777788888888888887754332  67778888


Q ss_pred             EEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhh
Q 045210          693 FDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK  772 (873)
Q Consensus       693 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~  772 (873)
                      |++++|+++ .+|..+.. +++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|         
T Consensus        82 L~Ls~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------  150 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL---------  150 (290)
T ss_dssp             EECCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC---------
T ss_pred             EECCCCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC---------
Confidence            888888877 67766654 7888888888888887767778888888888888888886555555555544         


Q ss_pred             hchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCC
Q 045210          773 FFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSN  852 (873)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  852 (873)
                                              +.|++++|++++..+..+..+++|++|+|++|+++ .+|..+..+.+|+.+++++|
T Consensus       151 ------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          151 ------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             ------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             ------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence                                    77888888888544455677888888888888887 67777777788888888888


Q ss_pred             cccc
Q 045210          853 RLQG  856 (873)
Q Consensus       853 ~l~g  856 (873)
                      ++..
T Consensus       206 p~~C  209 (290)
T 1p9a_G          206 PWLC  209 (290)
T ss_dssp             CBCC
T ss_pred             CccC
Confidence            8764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.9e-23  Score=221.82  Aligned_cols=232  Identities=18%  Similarity=0.165  Sum_probs=168.5

Q ss_pred             CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhh--hccccCcEEEcCCCcCccCCc----ccccC
Q 045210          589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW--MNWSFLFFLHLGENDFTGNLP----TSLGT  662 (873)
Q Consensus       589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~l~~n~l~~~~p----~~l~~  662 (873)
                      .++.+.+.++.++...-..+.. ...+++|++|++++|.+.+..|..+  ..+++|++|++++|++++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3555666665554322121111 1124668888888888888888777  788888888888888887555    33456


Q ss_pred             CCCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc--CC-hhHHhhcccCcEEEccCCeeeeeC--Cc-ccCCC
Q 045210          663 LSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN--IP-TWIGERLSGIILLSLRANQFHGFF--PP-ELCGL  736 (873)
Q Consensus       663 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--ip-~~~~~~l~~L~~L~L~~n~l~~~~--p~-~l~~l  736 (873)
                      +++|++|++++|++.+..+..++.+++|++|++++|++.+.  ++ ......+++|++|++++|+++...  +. .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            88888888888888888888888888888888888887642  21 111123788888888888886321  11 24677


Q ss_pred             CCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhc
Q 045210          737 ASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTN  816 (873)
Q Consensus       737 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~  816 (873)
                      ++|+.||+++|.+++.+|..++.+..                              ++.|+.|++++|+++ .+|..+. 
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~------------------------------~~~L~~L~Ls~N~l~-~lp~~~~-  271 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMW------------------------------SSALNSLNLSFAGLE-QVPKGLP-  271 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCC------------------------------CTTCCCEECCSSCCC-SCCSCCC-
T ss_pred             CCCCEEECCCCCCCccchhhHHhccC------------------------------cCcCCEEECCCCCCC-chhhhhc-
Confidence            88999999999998887877765542                              234688999999998 7888775 


Q ss_pred             CCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210          817 LVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       817 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  856 (873)
                       ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       272 -~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          272 -AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             -CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence             7899999999999963 44 5778899999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.5e-22  Score=207.61  Aligned_cols=189  Identities=22%  Similarity=0.271  Sum_probs=144.6

Q ss_pred             cccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCc
Q 045210          612 MNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELR  691 (873)
Q Consensus       612 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  691 (873)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            34467788888888877752  3677788888888888888876666677888888888888888877777778888888


Q ss_pred             EEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchh
Q 045210          692 LFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVD  771 (873)
Q Consensus       692 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~  771 (873)
                      +|++++|.+++ +|...+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|        
T Consensus       137 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------  207 (272)
T 3rfs_A          137 YLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL--------  207 (272)
T ss_dssp             EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC--------
T ss_pred             EEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC--------
Confidence            88888888874 444433348888888888888887777777888888888888888887777666666655        


Q ss_pred             hhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCC
Q 045210          772 KFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKS  843 (873)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  843 (873)
                                               +.|++++|.+.+..|       .|+.|+++.|.++|.+|.+++.+..
T Consensus       208 -------------------------~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          208 -------------------------QYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             -------------------------CEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             -------------------------CEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccccCC
Confidence                                     788888888876544       5778888888888888888877654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.5e-23  Score=227.93  Aligned_cols=183  Identities=22%  Similarity=0.239  Sum_probs=85.3

Q ss_pred             EEeccCcccccccCCccccC-CCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCC-CCceEeccC
Q 045210          548 YLNLSYNQIFGQIPDLNDAA-QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSM-RLQVLNLGN  625 (873)
Q Consensus       548 ~L~l~~n~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~-~L~~L~Ls~  625 (873)
                      +.+++.|.+++.+|.+...+ +|++|++++|.+.                     +..+..++..+..++ +|++|++++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~---------------------~~~~~~l~~~l~~~~~~L~~L~Ls~   60 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY---------------------SISTVELIQAFANTPASVTSLNLSG   60 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG---------------------GSCHHHHHHHHHTCCTTCCEEECCS
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCC---------------------hHHHHHHHHHHHhCCCceeEEECcC
Confidence            35666777776666443332 3555555555554                     444433333344444 455555555


Q ss_pred             CcccCCCChhhhcc-----ccCcEEEcCCCcCccCCcccc----cCC-CCccEEEccCCcccccCCcccc----c-CCCC
Q 045210          626 NTLSGEIPDCWMNW-----SFLFFLHLGENDFTGNLPTSL----GTL-SSLQILHLRGNRFSGKIPVSLQ----N-CTEL  690 (873)
Q Consensus       626 n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~p~~l~----~-l~~L  690 (873)
                      |.+++..+..+..+     ++|++|++++|++++..+..+    ..+ ++|++|++++|++++..+..+.    . .++|
T Consensus        61 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  140 (362)
T 3goz_A           61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI  140 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred             CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence            55554444444443     455555555555544433322    222 4555555555555444333322    1 2355


Q ss_pred             cEEEccCCeecccCChhHHh---hcc-cCcEEEccCCeeeeeCCccc----CCC-CCCCEEeCCCCcccc
Q 045210          691 RLFDISENEFVGNIPTWIGE---RLS-GIILLSLRANQFHGFFPPEL----CGL-ASLKILDLSSNNLTG  751 (873)
Q Consensus       691 ~~L~Ls~n~l~~~ip~~~~~---~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~  751 (873)
                      ++|++++|.+++..+..+..   ..+ +|++|++++|++++..+..+    ..+ ++|+.|||++|.+++
T Consensus       141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            55555555555332222211   122 55555555555544433222    222 355555555555553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.2e-23  Score=231.12  Aligned_cols=242  Identities=15%  Similarity=0.188  Sum_probs=194.3

Q ss_pred             cCcCcchhhhhhhcccCCCCceEeccCCcccCCCC----hhhhccccCcEEEcCCC---cCccCCcccc-------cCCC
Q 045210          599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP----DCWMNWSFLFFLHLGEN---DFTGNLPTSL-------GTLS  664 (873)
Q Consensus       599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~  664 (873)
                      .++......+...+..+++|+.|++++|.+++..+    ..+..+++|++|++++|   ++++.+|..+       ..++
T Consensus        15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~   94 (386)
T 2ca6_A           15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP   94 (386)
T ss_dssp             SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred             CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence            33333333444456668999999999999987644    44678999999999996   4556667655       6899


Q ss_pred             CccEEEccCCcccc----cCCcccccCCCCcEEEccCCeecccCChhHHhh---c---------ccCcEEEccCCeee-e
Q 045210          665 SLQILHLRGNRFSG----KIPVSLQNCTELRLFDISENEFVGNIPTWIGER---L---------SGIILLSLRANQFH-G  727 (873)
Q Consensus       665 ~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~---l---------~~L~~L~L~~n~l~-~  727 (873)
                      +|++|+|++|++.+    .+|..+..+++|++|++++|.+++..+..+...   +         ++|++|++++|+++ +
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            99999999999997    477788999999999999999986555554432   3         89999999999997 4


Q ss_pred             eCC---cccCCCCCCCEEeCCCCcccc-----ccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEE
Q 045210          728 FFP---PELCGLASLKILDLSSNNLTG-----VIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVL  799 (873)
Q Consensus       728 ~~p---~~l~~l~~L~~L~Ls~N~l~~-----~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  799 (873)
                      .+|   ..+..+++|+.|++++|.++.     .+|..+..+++                                 |+.|
T Consensus       175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~---------------------------------L~~L  221 (386)
T 2ca6_A          175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE---------------------------------LKVL  221 (386)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT---------------------------------CCEE
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC---------------------------------ccEE
Confidence            444   467788999999999999972     23324444444                                 5899


Q ss_pred             ECCCCccc----ccCChhhhcCCCCCeeeCCCCcCccc----CCcccc--CCCCCCeEeccCCcccc----cccccc-cc
Q 045210          800 DLSANYFS----GEIPSQVTNLVGLQTLKLSHNFFSGR----IPVNMG--AMKSVEALDFSSNRLQG----EIPKNM-VN  864 (873)
Q Consensus       800 ~ls~n~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l~~L~~L~ls~N~l~g----~iP~~l-~~  864 (873)
                      +|++|.++    +.+|..+..+++|++|+|++|.+++.    +|..+.  .+++|+.|++++|++++    .+|..+ .+
T Consensus       222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~  301 (386)
T 2ca6_A          222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK  301 (386)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred             ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence            99999997    78899999999999999999999977    677774  49999999999999998    599888 67


Q ss_pred             CCCCCcccC
Q 045210          865 LEFLEIFNI  873 (873)
Q Consensus       865 l~~L~~l~l  873 (873)
                      ++.|++|++
T Consensus       302 l~~L~~L~l  310 (386)
T 2ca6_A          302 MPDLLFLEL  310 (386)
T ss_dssp             CTTCCEEEC
T ss_pred             CCCceEEEc
Confidence            899998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=9.2e-23  Score=219.81  Aligned_cols=270  Identities=19%  Similarity=0.213  Sum_probs=164.4

Q ss_pred             CCCCccceeeEecCCCCcEEEEecCCCCCCCCCchhhhhccccceeeecccCccCC--CCCCeecCCCCCCCCCCCCccc
Q 045210           65 VGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGL--KHLIHLDLSYNDFQGIQIPRFL  142 (873)
Q Consensus        65 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~l  142 (873)
                      +..|..|.++.|+.  ..++.+++++.                .+.   +..+..+  +++++|++++|.+.+. .+. +
T Consensus        33 ~~vc~~W~~~~~~~--~~~~~l~l~~~----------------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~   89 (336)
T 2ast_B           33 SGVCKRWYRLASDE--SLWQTLDLTGK----------------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-H   89 (336)
T ss_dssp             TSSCHHHHHHHTCS--TTSSEEECTTC----------------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-C
T ss_pred             HHHHHHHHHHhcCc--hhheeeccccc----------------cCC---HHHHHhhhhccceEEEcCCcccccc-chh-h
Confidence            34577899988752  34666777664                222   2234444  6677777777766654 232 4


Q ss_pred             cCCCCCCEEeccCCcCCCC-CcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccC
Q 045210          143 GSLENLMYLNISRAGFVGI-IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS  221 (873)
Q Consensus       143 ~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  221 (873)
                      ..+++|++|++++|.+++. +|..+..+++|++|++++|.                                        
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~----------------------------------------  129 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR----------------------------------------  129 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB----------------------------------------
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc----------------------------------------
Confidence            4566666666666665544 45555555555555555543                                        


Q ss_pred             CCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCC-CCCCCchhHhhcCCCCCcEEEccCC-cCCCC-ChhhhcCCC-C
Q 045210          222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDN-QFADSSIVNQVLGLVNLVFLDLSTN-NFQGA-VPDAIQNST-S  297 (873)
Q Consensus       222 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~  297 (873)
                                   +++..+..++++++|++|++++| .+++..++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus       130 -------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          130 -------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             -------------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             -------------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence                         33333445556666666666666 4542245556677777777777777 66643 466677777 7


Q ss_pred             CCEEECCCC--CCC-CCCchhhhcCCCcCEEEccCCc-CCccCcccccCCCCCCEEeCCCCc-CCCcchhhhhcCCCCCE
Q 045210          298 LQHLDLSRN--HFS-SSVPDWFNKFIDLEYLSLSYNE-LQGSIPGSLGNLTSIKSLDLSFNR-LESKIPRAFKRLRHLRS  372 (873)
Q Consensus       298 L~~L~l~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~  372 (873)
                      |++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..++.+++|++|++++|. +.......+..+++|+.
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  276 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  276 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence            777777777  444 3456666777888888888887 666666677778888888888874 32222235677777777


Q ss_pred             EEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccC
Q 045210          373 VNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG  418 (873)
Q Consensus       373 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  418 (873)
                      |++++| ++......+.       ..++.|++++|.+++..|..++
T Consensus       277 L~l~~~-i~~~~~~~l~-------~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          277 LQVFGI-VPDGTLQLLK-------EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             EECTTS-SCTTCHHHHH-------HHSTTSEESCCCSCCTTCSSCS
T ss_pred             EeccCc-cCHHHHHHHH-------hhCcceEEecccCccccCCccc
Confidence            777777 4432222111       1155566666666666555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.6e-22  Score=219.70  Aligned_cols=165  Identities=20%  Similarity=0.187  Sum_probs=134.0

Q ss_pred             EEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCC----hhhhccc-cCcEEEcCCCcCccCCcccccCC---
Q 045210          592 TLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP----DCWMNWS-FLFFLHLGENDFTGNLPTSLGTL---  663 (873)
Q Consensus       592 ~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l---  663 (873)
                      .++++.|.+++.+|.....    .++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+   
T Consensus         2 ~~~ls~n~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~   77 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI----PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA   77 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS----CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred             ccccccccchHHHHHHHhC----CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence            4678888999888876433    5669999999999997776    7788888 89999999999998877777664   


Q ss_pred             --CCccEEEccCCcccccCCcccc----cC-CCCcEEEccCCeecccCChhHHhh----cccCcEEEccCCeeeeeC---
Q 045210          664 --SSLQILHLRGNRFSGKIPVSLQ----NC-TELRLFDISENEFVGNIPTWIGER----LSGIILLSLRANQFHGFF---  729 (873)
Q Consensus       664 --~~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~Ls~n~l~~~ip~~~~~~----l~~L~~L~L~~n~l~~~~---  729 (873)
                        ++|++|++++|++++..+..+.    .+ ++|++|++++|++++..+..+...    .++|++|++++|++.+..   
T Consensus        78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence              9999999999999987776544    44 899999999999997666665542    269999999999998643   


Q ss_pred             -CcccCCCC-CCCEEeCCCCccccccChhhhhh
Q 045210          730 -PPELCGLA-SLKILDLSSNNLTGVIPRCINNL  760 (873)
Q Consensus       730 -p~~l~~l~-~L~~L~Ls~N~l~~~ip~~l~~l  760 (873)
                       +..+..++ +|+.|++++|++++..+..+...
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  190 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKF  190 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHH
Confidence             33445555 99999999999998887766543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=6.5e-23  Score=221.03  Aligned_cols=188  Identities=19%  Similarity=0.205  Sum_probs=92.2

Q ss_pred             CCcEEeccCcccccccCCcccc--CCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEe
Q 045210          545 QINYLNLSYNQIFGQIPDLNDA--AQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLN  622 (873)
Q Consensus       545 ~L~~L~l~~n~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~  622 (873)
                      .++.++++++.+..  ..+..+  +.++.|++++|.+.+..+..                          ..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~~--------------------------~~~~~L~~L~   99 (336)
T 2ast_B           48 LWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAEH--------------------------FSPFRVQHMD   99 (336)
T ss_dssp             TSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCSC--------------------------CCCBCCCEEE
T ss_pred             hheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchhh--------------------------ccCCCCCEEE
Confidence            36677777776652  123333  56666666666665544432                          1244455555


Q ss_pred             ccCCcccCC-CChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCC-cccc-cCCcccccCCCCcEEEccCC-
Q 045210          623 LGNNTLSGE-IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN-RFSG-KIPVSLQNCTELRLFDISEN-  698 (873)
Q Consensus       623 Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~Ls~n-  698 (873)
                      +++|.+++. +|..+..+++|++|++++|++++..|..++.+++|++|++++| .+++ .++..+..+++|++|++++| 
T Consensus       100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence            555544433 4444445555555555555554444444555555555555555 3443 13344445555555555555 


Q ss_pred             eeccc-CChhHHhhcc-cCcEEEccCC--eee-eeCCcccCCCCCCCEEeCCCCc-cccccChhhhhhh
Q 045210          699 EFVGN-IPTWIGERLS-GIILLSLRAN--QFH-GFFPPELCGLASLKILDLSSNN-LTGVIPRCINNLA  761 (873)
Q Consensus       699 ~l~~~-ip~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~  761 (873)
                      .+++. ++..+.. ++ +|++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+..+..++
T Consensus       180 ~l~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          180 DFTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             TCCHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             CcChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence            44432 3333332 55 5555555555  233 2334444445555555555555 4444444444333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.5e-20  Score=196.72  Aligned_cols=204  Identities=20%  Similarity=0.212  Sum_probs=139.0

Q ss_pred             CccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccC
Q 045210          116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSH  195 (873)
Q Consensus       116 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  195 (873)
                      .+.+++++++++++++.++.  +|..+.  +++++|++++|.+++..|..+.++++|++|++++|.++.++..     ..
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~   75 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-----GT   75 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-----SC
T ss_pred             cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-----CC
Confidence            36788999999999999885  566554  7899999999999988888999999999999999988876543     56


Q ss_pred             CCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCc
Q 045210          196 LSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLV  275 (873)
Q Consensus       196 l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  275 (873)
                      +++|++|++++|.++.++.   .+..+++|++|++++|+++++.+..|.++++|++|++++|                  
T Consensus        76 l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N------------------  134 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN------------------  134 (290)
T ss_dssp             CTTCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS------------------
T ss_pred             CCcCCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC------------------
Confidence            6777777777777665532   3345555555555555555555555555555555555544                  


Q ss_pred             EEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCc
Q 045210          276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR  355 (873)
Q Consensus       276 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  355 (873)
                             ++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.
T Consensus       135 -------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          135 -------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             -------CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             -------CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence                   444444444555666666666666666444445566666666666666666 556666666677777777776


Q ss_pred             CC
Q 045210          356 LE  357 (873)
Q Consensus       356 l~  357 (873)
                      +.
T Consensus       207 ~~  208 (290)
T 1p9a_G          207 WL  208 (290)
T ss_dssp             BC
T ss_pred             cc
Confidence            64

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.2e-20  Score=193.44  Aligned_cols=181  Identities=21%  Similarity=0.235  Sum_probs=120.8

Q ss_pred             CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210          616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI  695 (873)
Q Consensus       616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  695 (873)
                      ...+.++++++.++ .+|..+.  ++++.|++++|++.+..+..+.++++|++|++++|++++..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            34667777777776 4555443  56777777777777766667777777777777777777766667777777777777


Q ss_pred             cCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210          696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE  775 (873)
Q Consensus       696 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~  775 (873)
                      ++|+++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..++.+++|            
T Consensus        91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------  157 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL------------  157 (251)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC------------
Confidence            777777 3443333346777777777777765555556666777777777777665544455554444            


Q ss_pred             hheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc
Q 045210          776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR  833 (873)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  833 (873)
                                           +.||+++|++++..|..+..+++|+.|++++|++++.
T Consensus       158 ---------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          158 ---------------------QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ---------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ---------------------CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                                 5677777776655555666666677777777766655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.8e-21  Score=205.09  Aligned_cols=202  Identities=20%  Similarity=0.194  Sum_probs=156.6

Q ss_pred             CcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCC----hhhhccccCcEEEcCCCcCccCCcccccCCCC
Q 045210          590 LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP----DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSS  665 (873)
Q Consensus       590 L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  665 (873)
                      |++|++++|.+++..|..+..  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..|..++.+++
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             eeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445555555555444443210  447788888888888887655    34457889999999999998888888999999


Q ss_pred             ccEEEccCCccccc--C--CcccccCCCCcEEEccCCeecccCCh---hHHhhcccCcEEEccCCeeeeeCCcccCCC--
Q 045210          666 LQILHLRGNRFSGK--I--PVSLQNCTELRLFDISENEFVGNIPT---WIGERLSGIILLSLRANQFHGFFPPELCGL--  736 (873)
Q Consensus       666 L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~Ls~n~l~~~ip~---~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--  736 (873)
                      |++|++++|++.+.  +  +..+..+++|++|++++|+++ .+|.   ++...+++|++|++++|++.+..|+.+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999987652  2  233468899999999999997 3333   344458999999999999999888888777  


Q ss_pred             -CCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhh
Q 045210          737 -ASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVT  815 (873)
Q Consensus       737 -~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~  815 (873)
                       ++|+.|++++|+++ .+|..+.  +                                 +|+.||+++|++++ +|. +.
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~---------------------------------~L~~L~Ls~N~l~~-~~~-~~  291 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--A---------------------------------KLRVLDLSSNRLNR-APQ-PD  291 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--S---------------------------------CCSCEECCSCCCCS-CCC-TT
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--C---------------------------------CCCEEECCCCcCCC-Cch-hh
Confidence             69999999999999 7776552  2                                 35899999999996 354 68


Q ss_pred             cCCCCCeeeCCCCcCcc
Q 045210          816 NLVGLQTLKLSHNFFSG  832 (873)
Q Consensus       816 ~l~~L~~L~Ls~N~l~~  832 (873)
                      .+++|+.|++++|+++.
T Consensus       292 ~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          292 ELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCCCSCEECSSTTTSC
T ss_pred             hCCCccEEECcCCCCCC
Confidence            88999999999999974

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.1e-21  Score=194.30  Aligned_cols=198  Identities=16%  Similarity=0.156  Sum_probs=153.4

Q ss_pred             CCCceEeccCCcccCCCChhhhccccCcEEEcCCCc-CccCCcccccCCCCccEEEccC-CcccccCCcccccCCCCcEE
Q 045210          616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEND-FTGNLPTSLGTLSSLQILHLRG-NRFSGKIPVSLQNCTELRLF  693 (873)
Q Consensus       616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L  693 (873)
                      +++++|++++|++++..+..+.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            357777777777776666677788888888888886 7655556778888888888887 88887777788888888888


Q ss_pred             EccCCeecccCChhHHhhcccCc---EEEccCC-eeeeeCCcccCCCCCCC-EEeCCCCccccccChhhhhhhcCchhhc
Q 045210          694 DISENEFVGNIPTWIGERLSGII---LLSLRAN-QFHGFFPPELCGLASLK-ILDLSSNNLTGVIPRCINNLAGMAKEVL  768 (873)
Q Consensus       694 ~Ls~n~l~~~ip~~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~~~~  768 (873)
                      ++++|++++ +|. +. .+++|+   .|++++| ++.+..+..+..+++|+ .|++++|.++ .+|......+       
T Consensus       111 ~l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~-------  179 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT-------  179 (239)
T ss_dssp             EEEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC-------
T ss_pred             eCCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC-------
Confidence            888888874 776 43 377887   8999998 88877777788899999 9999999988 6665332222       


Q ss_pred             chhhhchhheeeecccceeccCCCCccceEEECCCCc-ccccCChhhhcC-CCCCeeeCCCCcCcccCCccccCCCCCCe
Q 045210          769 EVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANY-FSGEIPSQVTNL-VGLQTLKLSHNFFSGRIPVNMGAMKSVEA  846 (873)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  846 (873)
                                                +|+.|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|..  .+++|+.
T Consensus       180 --------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~  230 (239)
T 2xwt_C          180 --------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKE  230 (239)
T ss_dssp             --------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSE
T ss_pred             --------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCce
Confidence                                      35889999995 886666778888 89999999999998 45554  6788889


Q ss_pred             EeccCCc
Q 045210          847 LDFSSNR  853 (873)
Q Consensus       847 L~ls~N~  853 (873)
                      |+++++.
T Consensus       231 L~l~~~~  237 (239)
T 2xwt_C          231 LIARNTW  237 (239)
T ss_dssp             EECTTC-
T ss_pred             eeccCcc
Confidence            9988774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=3.1e-21  Score=196.50  Aligned_cols=199  Identities=19%  Similarity=0.215  Sum_probs=165.8

Q ss_pred             CCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCc-ccccCCcccccCCCCcEEEccC-CeecccCChhH
Q 045210          631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNR-FSGKIPVSLQNCTELRLFDISE-NEFVGNIPTWI  708 (873)
Q Consensus       631 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~ip~~~  708 (873)
                      .+|. +.  ++|+.|++++|++++..+..+.++++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~  100 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDA  100 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTS
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHH
Confidence            5666 33  489999999999998777789999999999999997 8877777999999999999999 9998 455444


Q ss_pred             HhhcccCcEEEccCCeeeeeCCcccCCCCCCC---EEeCCCC-ccccccChhhhhhhcCchhhcchhhhchhheeeeccc
Q 045210          709 GERLSGIILLSLRANQFHGFFPPELCGLASLK---ILDLSSN-NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKK  784 (873)
Q Consensus       709 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~  784 (873)
                      +..+++|++|++++|++++ +|. +..+++|+   .|++++| .+++..+..+..+++|                     
T Consensus       101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L---------------------  157 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE---------------------  157 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS---------------------
T ss_pred             hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc---------------------
Confidence            4459999999999999997 665 88899998   9999999 8986666667776665                     


Q ss_pred             ceeccCCCCccce-EEECCCCcccccCChhhhcCCCCCeeeCCCCc-CcccCCccccCC-CCCCeEeccCCccccccccc
Q 045210          785 VVKYPIGYPYYLK-VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNF-FSGRIPVNMGAM-KSVEALDFSSNRLQGEIPKN  861 (873)
Q Consensus       785 ~~~~~~~~~~~L~-~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~ls~N~l~g~iP~~  861 (873)
                                  + .|++++|+++ .+|......++|+.|++++|+ +++..|..++.+ ++|+.||+++|++++ +|..
T Consensus       158 ------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~  223 (239)
T 2xwt_C          158 ------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK  223 (239)
T ss_dssp             ------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT
T ss_pred             ------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh
Confidence                        8 9999999999 777766555899999999995 987777889999 999999999999995 5544


Q ss_pred             cccCCCCCccc
Q 045210          862 MVNLEFLEIFN  872 (873)
Q Consensus       862 l~~l~~L~~l~  872 (873)
                        .+..|+.|+
T Consensus       224 --~~~~L~~L~  232 (239)
T 2xwt_C          224 --GLEHLKELI  232 (239)
T ss_dssp             --TCTTCSEEE
T ss_pred             --HhccCceee
Confidence              444555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.4e-20  Score=199.17  Aligned_cols=147  Identities=20%  Similarity=0.304  Sum_probs=74.5

Q ss_pred             CCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCc
Q 045210          587 PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSL  666 (873)
Q Consensus       587 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  666 (873)
                      +++|++|++++|.+... +     .+..+++|++|++++|.+++..+  +..+++|++|++++|++.+ ++ .+..+++|
T Consensus        40 l~~L~~L~l~~~~i~~l-~-----~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L  109 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-E-----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSI  109 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred             cCCcCEEEeeCCCccCc-h-----hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence            34555555555555431 1     12335555555555555553322  5555555555555555553 22 35555555


Q ss_pred             cEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCC
Q 045210          667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS  746 (873)
Q Consensus       667 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  746 (873)
                      +.|++++|++++. +. +..+++|++|++++|.+++ ++. +. .+++|+.|++++|++++..+  +..+++|+.|++++
T Consensus       110 ~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          110 KTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITN-ISP-LA-GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD  182 (308)
T ss_dssp             CEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCc-Ccc-cc-CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence            5555555555532 21 5555555555555555552 332 22 25555555555555554322  45555555555555


Q ss_pred             Cccc
Q 045210          747 NNLT  750 (873)
Q Consensus       747 N~l~  750 (873)
                      |.++
T Consensus       183 n~l~  186 (308)
T 1h6u_A          183 NKIS  186 (308)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            5555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=5.3e-20  Score=188.74  Aligned_cols=166  Identities=20%  Similarity=0.240  Sum_probs=90.0

Q ss_pred             CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210          589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI  668 (873)
Q Consensus       589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  668 (873)
                      ..+.++++++.++. +|..+      .+.++.|++++|.+++..+..+.++++|++|++++|++++..|..+..+++|++
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGI------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCC------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCeEEecCCCCccc-cCCCC------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence            34555555555543 22211      134556666666665555555555666666666666665555555555566666


Q ss_pred             EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210          669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN  748 (873)
Q Consensus       669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  748 (873)
                      |++++|++++..+..+..+++|++|++++|+++ .+|...+..+++|+.|++++|++++..+..+..+++|+.|+|++|+
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence            666666665555555555566666666666555 3333332235566666666666555444455555666666666666


Q ss_pred             cccccChhhhhhhc
Q 045210          749 LTGVIPRCINNLAG  762 (873)
Q Consensus       749 l~~~ip~~l~~l~~  762 (873)
                      +++..|..+..+++
T Consensus       167 l~~~~~~~~~~l~~  180 (251)
T 3m19_A          167 LQSVPHGAFDRLGK  180 (251)
T ss_dssp             CSCCCTTTTTTCTT
T ss_pred             CCccCHHHHhCCCC
Confidence            65444444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=8.8e-20  Score=192.93  Aligned_cols=195  Identities=22%  Similarity=0.324  Sum_probs=113.8

Q ss_pred             ccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCC
Q 045210          117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHL  196 (873)
Q Consensus       117 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l  196 (873)
                      +..+++|++|++++|.++.  ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.++.++     .+.++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-----~~~~l  106 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-----AIAGL  106 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-----GGTTC
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-----hhcCC
Confidence            4467788888888887775  34 46778888888888887776444  777888888888888776653     24556


Q ss_pred             CCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcE
Q 045210          197 SLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVF  276 (873)
Q Consensus       197 ~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  276 (873)
                      ++|++|++++|.++..+    .+..+++|++|++++|.+++..+                           +..+++|++
T Consensus       107 ~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~---------------------------l~~l~~L~~  155 (308)
T 1h6u_A          107 QSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP---------------------------LAGLTNLQY  155 (308)
T ss_dssp             TTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG---------------------------GGGCTTCCE
T ss_pred             CCCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc---------------------------ccCCCCccE
Confidence            66666666666655542    13444555555555555444432                           444455555


Q ss_pred             EEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcC
Q 045210          277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL  356 (873)
Q Consensus       277 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  356 (873)
                      |++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++..  .+..+++|++|++++|.+
T Consensus       156 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          156 LSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred             EEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence            5555555443222  4555555555555555553222  455555555555555555332  255555555555555555


Q ss_pred             CC
Q 045210          357 ES  358 (873)
Q Consensus       357 ~~  358 (873)
                      ++
T Consensus       230 ~~  231 (308)
T 1h6u_A          230 TN  231 (308)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.7e-20  Score=212.63  Aligned_cols=195  Identities=26%  Similarity=0.322  Sum_probs=116.7

Q ss_pred             CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210          589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI  668 (873)
Q Consensus       589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  668 (873)
                      +++.|++++|.+++ +|..+      .++|++|++++|.++ .+|   ..+++|+.|++++|++++ +|. +..  +|+.
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~  124 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH  124 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE
T ss_pred             CccEEEeCCCCCCc-cCHhH------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE
Confidence            56677777776665 44322      245677777777666 455   345667777777776665 555 443  6677


Q ss_pred             EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210          669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN  748 (873)
Q Consensus       669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  748 (873)
                      |++++|++++ +|.   .+++|+.|++++|.+++ +|.    .+++|+.|++++|++++ +|. +.  ++|+.|+|++|.
T Consensus       125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          125 LDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred             EECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence            7777776665 444   45666777777776663 555    25666777777776665 454 44  666677777766


Q ss_pred             cccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCC
Q 045210          749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN  828 (873)
Q Consensus       749 l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N  828 (873)
                      ++ .+|. +..  +|..                          .+..|+.|+|++|+++ .||..+.++++|+.|+|++|
T Consensus       192 L~-~lp~-~~~--~L~~--------------------------~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          192 LE-SLPA-VPV--RNHH--------------------------SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             CS-SCCC-CC------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred             CC-chhh-HHH--hhhc--------------------------ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence            66 5554 332  1100                          0122366666666666 46666666666666666666


Q ss_pred             cCcccCCccccCCC
Q 045210          829 FFSGRIPVNMGAMK  842 (873)
Q Consensus       829 ~l~~~ip~~l~~l~  842 (873)
                      .+++.+|..++.++
T Consensus       241 ~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          241 PLSSRIRESLSQQT  254 (571)
T ss_dssp             SCCHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHhh
Confidence            66666666665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=9.5e-20  Score=181.07  Aligned_cols=195  Identities=21%  Similarity=0.235  Sum_probs=116.5

Q ss_pred             ceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCC
Q 045210          619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN  698 (873)
Q Consensus       619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  698 (873)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34555555554 233322  245666666666666544455566666666666666666555555566666666666666


Q ss_pred             eecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhhe
Q 045210          699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDAL  778 (873)
Q Consensus       699 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~  778 (873)
                      +++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|               
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L---------------  150 (208)
T 2o6s_A           87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL---------------  150 (208)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC---------------
T ss_pred             cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc---------------
Confidence            666 3443332336666666666666665555556667777777777777765444445544443               


Q ss_pred             eeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccccc
Q 045210          779 IVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEI  858 (873)
Q Consensus       779 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  858 (873)
                                        +.|++++|.+.+.       ++.|+.|+++.|.++|.+|.+++.++.    +...|...|..
T Consensus       151 ------------------~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~  201 (208)
T 2o6s_A          151 ------------------QYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKP  201 (208)
T ss_dssp             ------------------CEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCB
T ss_pred             ------------------cEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCc
Confidence                              6677777766643       335667777777777777777666554    55555555554


Q ss_pred             ccc
Q 045210          859 PKN  861 (873)
Q Consensus       859 P~~  861 (873)
                      +.+
T Consensus       202 ~~~  204 (208)
T 2o6s_A          202 VRS  204 (208)
T ss_dssp             GGG
T ss_pred             cee
Confidence            443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.4e-19  Score=179.83  Aligned_cols=181  Identities=19%  Similarity=0.207  Sum_probs=156.1

Q ss_pred             cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccC
Q 045210          643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA  722 (873)
Q Consensus       643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~  722 (873)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|+++ .+|...+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence            57888888887 566554  468999999999999877778899999999999999999 56665544599999999999


Q ss_pred             CeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECC
Q 045210          723 NQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLS  802 (873)
Q Consensus       723 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls  802 (873)
                      |++++..+..+..+++|+.|++++|.+++..+..+..+++|                                 +.|+++
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------~~L~l~  132 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL---------------------------------KDLRLY  132 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------CEEECC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC---------------------------------CEEECC
Confidence            99998777778999999999999999997766667766665                                 899999


Q ss_pred             CCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccccccCCC
Q 045210          803 ANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEF  867 (873)
Q Consensus       803 ~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~  867 (873)
                      +|++++..+..+..+++|++|++++|.+.+.       +++|+.|+++.|+++|.+|+.++.+..
T Consensus       133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence            9999976666789999999999999988754       457899999999999999999887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=2.1e-19  Score=194.10  Aligned_cols=242  Identities=17%  Similarity=0.172  Sum_probs=157.2

Q ss_pred             CeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCC-hhhhccccCcE-EEc
Q 045210          570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP-DCWMNWSFLFF-LHL  647 (873)
Q Consensus       570 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~l  647 (873)
                      ++++.+++.++......++++++|++++|+++...+..    |.++++|++|+|++|++.+.+| ..|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTS----STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHH----HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666666433335667788888888776543333    4457788888888888766555 45677777654 555


Q ss_pred             CCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhc-ccCcEEEccCCeee
Q 045210          648 GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERL-SGIILLSLRANQFH  726 (873)
Q Consensus       648 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l-~~L~~L~L~~n~l~  726 (873)
                      .+|+++...|..|..+++|++|++++|++.+..+..+....++..+++.++.-...+|...+..+ ..++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            66777766677778888888888888888766666666666777777765432235554433334 35777888888877


Q ss_pred             eeCCcccCCCCCCCEEeCCCCccccccCh-hhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCc
Q 045210          727 GFFPPELCGLASLKILDLSSNNLTGVIPR-CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANY  805 (873)
Q Consensus       727 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~  805 (873)
                      . +|......++|+.|++++|+..+.+|. .|+.+++|                                 +.||+|+|+
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L---------------------------------~~LdLs~N~  213 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP---------------------------------VILDISRTR  213 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC---------------------------------SEEECTTSC
T ss_pred             C-CChhhccccchhHHhhccCCcccCCCHHHhccCccc---------------------------------chhhcCCCC
Confidence            4 444455566788888875444445654 45555554                                 778888888


Q ss_pred             ccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCc
Q 045210          806 FSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNR  853 (873)
Q Consensus       806 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~  853 (873)
                      ++ .+|.  +.+.+|+.|.+.++.-...+|. +.++++|+.++++++.
T Consensus       214 l~-~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          214 IH-SLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             CC-CCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             cC-ccCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence            87 4554  2345566666655555556773 6777888888887654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=3.2e-19  Score=202.18  Aligned_cols=215  Identities=20%  Similarity=0.231  Sum_probs=132.1

Q ss_pred             CcCCCccCCCCCCc-----cceee-EecCCCCcEEEEecCCCCCCCCCchhhhhccccceeeecccCccCCCCCCeecCC
Q 045210           56 RLASWNNIGVGDCC-----KWYGV-VCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLS  129 (873)
Q Consensus        56 ~~~~W~~~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~~L~~L~Ls  129 (873)
                      .+.+|. . +.++|     .|.|+ .|..  ++++.+++++.                .+.+ +|+.+.  ++|++|+|+
T Consensus        32 ~l~~W~-~-~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n----------------~L~~-lp~~l~--~~L~~L~Ls   88 (571)
T 3cvr_A           32 AWDKWE-K-QALPGENRNEAVSLLKECLI--NQFSELQLNRL----------------NLSS-LPDNLP--PQITVLEIT   88 (571)
T ss_dssp             HHHHHH-T-TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS----------------CCSC-CCSCCC--TTCSEEECC
T ss_pred             HHHHHh-c-cCCccccccchhhhcccccc--CCccEEEeCCC----------------CCCc-cCHhHc--CCCCEEECc
Confidence            345675 2 45566     69999 7853  57888888885                5555 666553  788999999


Q ss_pred             CCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCC
Q 045210          130 YNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDL  209 (873)
Q Consensus       130 ~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l  209 (873)
                      +|.++.  +|   +.+++|++|++++|.+++ +|. +.+  +|++|++++|.++.++.       .+++|++|++++|.+
T Consensus        89 ~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l  152 (571)
T 3cvr_A           89 QNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNNQL  152 (571)
T ss_dssp             SSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCC
T ss_pred             CCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCCcc
Confidence            998884  56   457888888888888887 666 655  88888888888877654       356777777777777


Q ss_pred             CCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCCh
Q 045210          210 SKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVP  289 (873)
Q Consensus       210 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (873)
                      +.++.      .+++|++|++++|.++++++  |.  ++|++|++++|.++  .+|. +..  +|               
T Consensus       153 ~~lp~------~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~--~lp~-~~~--~L---------------  202 (571)
T 3cvr_A          153 TMLPE------LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE--SLPA-VPV--RN---------------  202 (571)
T ss_dssp             SCCCC------CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS--SCCC-CC--------------------
T ss_pred             CcCCC------cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC--chhh-HHH--hh---------------
Confidence            66543      35566666666666666433  33  56666666666554  2232 221  33               


Q ss_pred             hhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccC
Q 045210          290 DAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGN  342 (873)
Q Consensus       290 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  342 (873)
                        ....+.|++|++++|.++ .+|..+..+++|++|++++|.+++.+|..++.
T Consensus       203 --~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          203 --HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             --hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence              000011155555555554 34444444555555555555555555544443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=8.8e-19  Score=189.14  Aligned_cols=237  Identities=18%  Similarity=0.167  Sum_probs=184.5

Q ss_pred             cEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCc-ccccCCCCccE-
Q 045210          591 TTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLP-TSLGTLSSLQI-  668 (873)
Q Consensus       591 ~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~-  668 (873)
                      +.++.++++++. +|..+      .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| ..|.++++++. 
T Consensus        12 ~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            578888888874 45432      3579999999999996666789999999999999999987666 46788988875 


Q ss_pred             EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccC-CeeeeeCCcccCCCC-CCCEEeCCC
Q 045210          669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA-NQFHGFFPPELCGLA-SLKILDLSS  746 (873)
Q Consensus       669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~Ls~  746 (873)
                      +.+++|+++...|..|..+++|++|++++|++.+ +|...+....++..+++.+ +++....+..+..+. .++.|++++
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            6677899998889999999999999999999984 5544333367788899876 456655556666664 689999999


Q ss_pred             CccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCCh-hhhcCCCCCeeeC
Q 045210          747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPS-QVTNLVGLQTLKL  825 (873)
Q Consensus       747 N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~-~l~~l~~L~~L~L  825 (873)
                      |.++ .+|.......+                                 ++.|++++|+..+.||. .++.+++|++|||
T Consensus       164 N~i~-~i~~~~f~~~~---------------------------------L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          164 NGIQ-EIHNSAFNGTQ---------------------------------LDELNLSDNNNLEELPNDVFHGASGPVILDI  209 (350)
T ss_dssp             SCCC-EECTTSSTTEE---------------------------------EEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred             cccc-CCChhhccccc---------------------------------hhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence            9998 55554333333                                 48899986554457775 5799999999999


Q ss_pred             CCCcCcccCCccccCCCCCCeEeccCCccccccccccccCCCCCcccC
Q 045210          826 SHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI  873 (873)
Q Consensus       826 s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l  873 (873)
                      ++|+++ .+|..  .+.+|+.|.+.++.-...+| .+.+|+.|+.+++
T Consensus       210 s~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l  253 (350)
T 4ay9_X          210 SRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASL  253 (350)
T ss_dssp             TTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred             CCCCcC-ccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence            999999 56653  46677888877777677888 4888888887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=3.3e-18  Score=171.02  Aligned_cols=115  Identities=22%  Similarity=0.224  Sum_probs=59.6

Q ss_pred             cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEcc
Q 045210          643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR  721 (873)
Q Consensus       643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  721 (873)
                      +.+++++|.++ .+|..+.  +.++.|++++|++++..+ ..|..+++|++|++++|++++..|..+. .+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECC
Confidence            46777777766 3555443  345666666666665543 3355556666666666655533332333 24555555555


Q ss_pred             CCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhh
Q 045210          722 ANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLA  761 (873)
Q Consensus       722 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  761 (873)
                      +|++++..|..+..+++|+.|+|++|.+++..|..+..++
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  129 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS  129 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc
Confidence            5555444444444455555555555555544444444333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.77  E-value=4.3e-21  Score=219.03  Aligned_cols=204  Identities=20%  Similarity=0.156  Sum_probs=154.6

Q ss_pred             ccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCc-------------CccCCcccccCCCCccEEE-ccCCcccc
Q 045210          613 NNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEND-------------FTGNLPTSLGTLSSLQILH-LRGNRFSG  678 (873)
Q Consensus       613 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~  678 (873)
                      ..++.|+.|++++|++. .+|..++.+++|+.|++++|.             ..+.+|..++.+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            34667778888888776 677778888888888876664             3344445555555555555 4444321 


Q ss_pred             cCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhh
Q 045210          679 KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN  758 (873)
Q Consensus       679 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  758 (873)
                                .|+.+.+++|.++. +|      ...|+.|++++|++++ +|. ++.+++|+.|+|++|.++ .+|..++
T Consensus       424 ----------~L~~l~l~~n~i~~-l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLK-ME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             ----------HHHHHHHHHHHHHH-HH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred             ----------hhhhhhhhcccccc-cC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence                      23334444444441 11      2468899999999986 565 899999999999999999 8898888


Q ss_pred             hhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC-Ccc
Q 045210          759 NLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI-PVN  837 (873)
Q Consensus       759 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~  837 (873)
                      .+++|                                 +.|+|++|++++ +| .++++++|++|+|++|.+++.+ |..
T Consensus       484 ~l~~L---------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~  528 (567)
T 1dce_A          484 ALRCL---------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP  528 (567)
T ss_dssp             GCTTC---------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred             cCCCC---------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH
Confidence            87776                                 899999999996 78 8999999999999999999887 999


Q ss_pred             ccCCCCCCeEeccCCccccccccc---cccCCCCCcccC
Q 045210          838 MGAMKSVEALDFSSNRLQGEIPKN---MVNLEFLEIFNI  873 (873)
Q Consensus       838 l~~l~~L~~L~ls~N~l~g~iP~~---l~~l~~L~~l~l  873 (873)
                      ++.+++|+.|++++|++++.+|..   +..++.|++||+
T Consensus       529 l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999999999999876643   345888988875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.4e-18  Score=180.17  Aligned_cols=171  Identities=24%  Similarity=0.370  Sum_probs=83.5

Q ss_pred             ccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcE
Q 045210          638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL  717 (873)
Q Consensus       638 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  717 (873)
                      .+++|+.|++++|.+.. ++ .+..+++|+.|++++|++++..+  +..+++|++|++++|.+++ +|. +. .+++|+.
T Consensus        44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~  116 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LK-DLKKLKS  116 (291)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GT-TCTTCCE
T ss_pred             hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hc-cCCCCCE
Confidence            44445555555555442 22 24445555555555555543322  4455555555555555542 222 22 2555555


Q ss_pred             EEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccce
Q 045210          718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLK  797 (873)
Q Consensus       718 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  797 (873)
                      |++++|++.+.  +.+..+++|+.|++++|.+++.  ..++.+++|                                 +
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L---------------------------------~  159 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL---------------------------------D  159 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC---------------------------------S
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC---------------------------------C
Confidence            55555555432  3445555555555555555532  233333322                                 5


Q ss_pred             EEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210          798 VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       798 ~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  856 (873)
                      .|++++|++++..|  +..+++|++|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus       160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             EEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            55555555554332  5555555555555555553 23 25555555555555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.2e-17  Score=191.55  Aligned_cols=203  Identities=20%  Similarity=0.286  Sum_probs=128.9

Q ss_pred             CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEE
Q 045210          615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD  694 (873)
Q Consensus       615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  694 (873)
                      +++|+.|++++|.+.. +| .+..+++|+.|+|++|++.+..|  +..+++|+.|+|++|++.+ +| .+..+++|+.|+
T Consensus        42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            5667777777777663 33 46677777777777777775433  6677777777777777764 22 567777777777


Q ss_pred             ccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhc
Q 045210          695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFF  774 (873)
Q Consensus       695 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~  774 (873)
                      |++|++.+ +| .+. .+++|+.|+|++|++.+.  ..+..+++|+.|+|++|.+++..|  +..+++|           
T Consensus       116 Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L-----------  177 (605)
T 1m9s_A          116 LEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL-----------  177 (605)
T ss_dssp             CTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC-----------
T ss_pred             ecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC-----------
Confidence            77777763 43 333 377777777777777754  566777777777777777776554  4444443           


Q ss_pred             hhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC---------Cccc----cCC
Q 045210          775 EDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI---------PVNM----GAM  841 (873)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i---------p~~l----~~l  841 (873)
                                            +.|+|++|++++ + +.+..+++|+.|+|++|++++.-         |..+    +..
T Consensus       178 ----------------------~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~  233 (605)
T 1m9s_A          178 ----------------------QNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL  233 (605)
T ss_dssp             ----------------------CEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCB
T ss_pred             ----------------------CEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCC
Confidence                                  677777777775 3 35777777777777777776542         2222    122


Q ss_pred             CCCCeEeccCCccccccccccccC
Q 045210          842 KSVEALDFSSNRLQGEIPKNMVNL  865 (873)
Q Consensus       842 ~~L~~L~ls~N~l~g~iP~~l~~l  865 (873)
                      ...+.+...++...|.+|..+..+
T Consensus       234 ~~~~~i~~~g~~~~~~i~~~l~~~  257 (605)
T 1m9s_A          234 VTPEIISDDGDYEKPNVKWHLPEF  257 (605)
T ss_dssp             CCCSEESTTCEEETTEEECCCSSC
T ss_pred             cCchhcccCCcccCCcceeccccc
Confidence            233444445555556666555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=2.6e-18  Score=197.15  Aligned_cols=193  Identities=23%  Similarity=0.322  Sum_probs=163.6

Q ss_pred             CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210          616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI  695 (873)
Q Consensus       616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  695 (873)
                      ..+..+.+..+.+.+..+  +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|++.+..|  +..+++|+.|+|
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            345666777777776544  5788999999999999984 44 58999999999999999997655  899999999999


Q ss_pred             cCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210          696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE  775 (873)
Q Consensus       696 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~  775 (873)
                      ++|.+.+ +| .+.. +++|+.|+|++|++.+.  +.+..+++|+.|+|++|.+++.  ..++.+++             
T Consensus        95 s~N~l~~-l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~-------------  154 (605)
T 1m9s_A           95 DENKIKD-LS-SLKD-LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK-------------  154 (605)
T ss_dssp             CSSCCCC-CT-TSTT-CTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT-------------
T ss_pred             cCCCCCC-Ch-hhcc-CCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCC-------------
Confidence            9999984 55 4554 99999999999999864  5689999999999999999864  45555554             


Q ss_pred             hheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210          776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  855 (873)
                                          |+.|+|++|.+++..|  +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|+++
T Consensus       155 --------------------L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          155 --------------------LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             --------------------CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred             --------------------CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence                                4899999999998766  99999999999999999974 4 6899999999999999998


Q ss_pred             ccc
Q 045210          856 GEI  858 (873)
Q Consensus       856 g~i  858 (873)
                      +..
T Consensus       211 ~~p  213 (605)
T 1m9s_A          211 NKP  213 (605)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=4.3e-17  Score=162.91  Aligned_cols=153  Identities=22%  Similarity=0.290  Sum_probs=104.0

Q ss_pred             cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccC
Q 045210          643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA  722 (873)
Q Consensus       643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~  722 (873)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|++|++++|++++..|..+.. +++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCC
Confidence            56788888877 5666554  67888888888888777777777778888888887777555555553 67777777777


Q ss_pred             CeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECC
Q 045210          723 NQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLS  802 (873)
Q Consensus       723 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls  802 (873)
                      |++++..+..+..+++|+.|+|++|.+++..|..|..+++|                                 +.|+|+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------~~L~L~  136 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL---------------------------------NLLSLY  136 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------CEEECC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC---------------------------------CEEECC
Confidence            77765544445666677777777777666666555555444                                 566666


Q ss_pred             CCcccccCChhhhcCCCCCeeeCCCCcCcc
Q 045210          803 ANYFSGEIPSQVTNLVGLQTLKLSHNFFSG  832 (873)
Q Consensus       803 ~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  832 (873)
                      +|++++..+..+..+++|++|+|++|++..
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            666665555556666666666666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=7.7e-17  Score=162.24  Aligned_cols=156  Identities=21%  Similarity=0.241  Sum_probs=107.4

Q ss_pred             cCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEc
Q 045210          641 FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSL  720 (873)
Q Consensus       641 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L  720 (873)
                      +-+.++.+++.+. .+|..+.  ++|+.|++++|++++..|..|..+++|++|++++|++. .+|...+..+++|+.|++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEEC
Confidence            3567888888887 5676554  78888888888888887888888888888888888886 566554444777777777


Q ss_pred             cCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEE
Q 045210          721 RANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLD  800 (873)
Q Consensus       721 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  800 (873)
                      ++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|                                 +.|+
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L---------------------------------~~L~  141 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL---------------------------------THLA  141 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC---------------------------------SEEE
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC---------------------------------CEEE
Confidence            777777655555666677777777777666 556555544443                                 5666


Q ss_pred             CCCCcccccCChhhhcCCCCCeeeCCCCcCcccC
Q 045210          801 LSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI  834 (873)
Q Consensus       801 ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  834 (873)
                      +++|++++..+..+..+++|+.|++++|.+.+..
T Consensus       142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            6666666544455666666666666666666544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=3.1e-18  Score=201.86  Aligned_cols=194  Identities=17%  Similarity=0.196  Sum_probs=128.2

Q ss_pred             EeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCee
Q 045210          621 LNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEF  700 (873)
Q Consensus       621 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  700 (873)
                      ++++.|.+. ..|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+++ .+|..++++++|++|+|++|.+
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            344555555 56788999999999999999998 68877889999999999999999 8899999999999999999999


Q ss_pred             cccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheee
Q 045210          701 VGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIV  780 (873)
Q Consensus       701 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~  780 (873)
                      + .+|..+.. +++|++|+|++|.++ .+|..++.+++|+.|+|++|++++.+|..+..+...                 
T Consensus       283 ~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~-----------------  342 (727)
T 4b8c_D          283 T-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT-----------------  342 (727)
T ss_dssp             S-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH-----------------
T ss_pred             C-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh-----------------
Confidence            9 89999876 999999999999997 788889999999999999999999999988765432                 


Q ss_pred             ecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCC--------cCcccCCccccCCCCCCeEeccCC
Q 045210          781 YKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN--------FFSGRIPVNMGAMKSVEALDFSSN  852 (873)
Q Consensus       781 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~~L~~L~ls~N  852 (873)
                                     ...+++++|.++|.+|.+      |+.|++++|        .+.+.++..+..+..+....+++|
T Consensus       343 ---------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N  401 (727)
T 4b8c_D          343 ---------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN  401 (727)
T ss_dssp             ---------------HHHHHHHHCCCCCCCCCC-----------------------------------------------
T ss_pred             ---------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence                           124778899999988865      445667776        445555555667777888889999


Q ss_pred             cccccc
Q 045210          853 RLQGEI  858 (873)
Q Consensus       853 ~l~g~i  858 (873)
                      -+.+..
T Consensus       402 il~~~~  407 (727)
T 4b8c_D          402 TLCQHY  407 (727)
T ss_dssp             CCCGGG
T ss_pred             cccccc
Confidence            886443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=6.2e-17  Score=161.72  Aligned_cols=137  Identities=20%  Similarity=0.151  Sum_probs=107.1

Q ss_pred             CCceEeccCCcccCCCC-hhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210          617 RLQVLNLGNNTLSGEIP-DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI  695 (873)
Q Consensus       617 ~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  695 (873)
                      .+++|++++|++++..| ..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            35667777777765543 44677778888888888887766667788888888888888888777777888888888888


Q ss_pred             cCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210          696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP  754 (873)
Q Consensus       696 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  754 (873)
                      ++|++++..|..+.. +++|+.|++++|++++..|..+..+++|+.|++++|++++..+
T Consensus       113 s~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          113 RSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTSCCCCBCTTSSTT-CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCcCCeECHhHcCC-CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            888888666666654 8888888888888888888888899999999999999987654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=3.3e-17  Score=177.47  Aligned_cols=181  Identities=21%  Similarity=0.220  Sum_probs=134.0

Q ss_pred             ceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCccccc-CCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210          619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLG-TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE  697 (873)
Q Consensus       619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  697 (873)
                      +.++++++.++ .+|..+.  ..++.|++++|++++..+..+. ++++|+.|+|++|++++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            67888888887 4665543  4578899999988877777776 888899999999988887778888888888999988


Q ss_pred             CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhh
Q 045210          698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDA  777 (873)
Q Consensus       698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~  777 (873)
                      |++++ +|...+..+++|+.|+|++|++.+..|..+..+++|+.|+|++|.+++..+..+..+..               
T Consensus        98 N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~---------------  161 (361)
T 2xot_A           98 NHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK---------------  161 (361)
T ss_dssp             SCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------------------
T ss_pred             CcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc---------------
Confidence            88874 44443345888888888888888888888888888888888888888433333321111               


Q ss_pred             eeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCC--CCeeeCCCCcCccc
Q 045210          778 LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVG--LQTLKLSHNFFSGR  833 (873)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~--L~~L~Ls~N~l~~~  833 (873)
                                     +++|+.|||++|++++..+..+..++.  ++.|+|++|++...
T Consensus       162 ---------------l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          162 ---------------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             ---------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             ---------------CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence                           234578888888888544466777776  37788888887643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.8e-16  Score=165.93  Aligned_cols=150  Identities=25%  Similarity=0.371  Sum_probs=95.7

Q ss_pred             cCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCC
Q 045210          220 NSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ  299 (873)
Q Consensus       220 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  299 (873)
                      ..+++|++|++++|.+++..+  +.++++|++|++++|.+++   .+.+..+++|++|++++|++++.  ..+..+++|+
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~  137 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  137 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred             hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence            445555555555565555544  6666677777777776652   23366667777777777776643  3566677777


Q ss_pred             EEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCc
Q 045210          300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK  379 (873)
Q Consensus       300 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  379 (873)
                      +|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|+
T Consensus       138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEE
T ss_pred             EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCc
Confidence            777777777643  456677777777777777765433  66777777777777777653 2 36666666666666665


Q ss_pred             Ccc
Q 045210          380 LSQ  382 (873)
Q Consensus       380 l~~  382 (873)
                      ++.
T Consensus       212 i~~  214 (291)
T 1h6t_A          212 CLN  214 (291)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=4.3e-17  Score=160.07  Aligned_cols=154  Identities=21%  Similarity=0.263  Sum_probs=105.7

Q ss_pred             CCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCE
Q 045210          662 TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKI  741 (873)
Q Consensus       662 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  741 (873)
                      .+++|+.|++++|.++ .+| .+..+++|++|++++|.+. . +..+.. +++|++|++++|++++..|..+..+++|+.
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTT-CTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhc-CCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3445555555555555 333 3555566666666666443 2 223443 677777777777777767777888888888


Q ss_pred             EeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCC
Q 045210          742 LDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQ  821 (873)
Q Consensus       742 L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~  821 (873)
                      |++++|.+++..|..++.+++|                                 +.|++++|++.+.+| .+..+++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L---------------------------------~~L~L~~n~~i~~~~-~l~~l~~L~  162 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKV---------------------------------NSIDLSYNGAITDIM-PLKTLPELK  162 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSC---------------------------------CEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred             EEecCCccCcHhHHHHhhCCCC---------------------------------CEEEccCCCCccccH-hhcCCCCCC
Confidence            8888888887777777666555                                 788888888444566 688888899


Q ss_pred             eeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210          822 TLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       822 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  856 (873)
                      +|++++|.+++ +| .+..+++|+.|++++|++.+
T Consensus       163 ~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          163 SLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             EEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             EEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            99999998885 44 67888889999999988764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=8.7e-17  Score=160.68  Aligned_cols=153  Identities=22%  Similarity=0.296  Sum_probs=134.2

Q ss_pred             ceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCC
Q 045210          619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN  698 (873)
Q Consensus       619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  698 (873)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|+.|+|++|++++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            67899999888 5666554  68999999999999877778999999999999999999988999999999999999999


Q ss_pred             eecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhhe
Q 045210          699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDAL  778 (873)
Q Consensus       699 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~  778 (873)
                      +++ .+|...+..+++|+.|++++|++++..|..+..+++|+.|+|++|++++..+..+..+++|               
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------  154 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI---------------  154 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC---------------
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC---------------
Confidence            998 6787766669999999999999999889999999999999999999997777677766655               


Q ss_pred             eeecccceeccCCCCccceEEECCCCcccc
Q 045210          779 IVYKKKVVKYPIGYPYYLKVLDLSANYFSG  808 (873)
Q Consensus       779 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  808 (873)
                                        +.|++++|.+..
T Consensus       155 ------------------~~L~L~~N~~~c  166 (220)
T 2v9t_B          155 ------------------QTMHLAQNPFIC  166 (220)
T ss_dssp             ------------------CEEECCSSCEEC
T ss_pred             ------------------CEEEeCCCCcCC
Confidence                              789999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=3.4e-17  Score=177.35  Aligned_cols=179  Identities=23%  Similarity=0.241  Sum_probs=148.0

Q ss_pred             CeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCC
Q 045210          570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE  649 (873)
Q Consensus       570 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~  649 (873)
                      +.++++++.+.......+..++.|++++|.+++..+..+.   ..+++|+.|++++|++++..+..|.++++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            5677777776654444567788888888888876655432   1588999999999999988888899999999999999


Q ss_pred             CcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHH---hhcccCcEEEccCCeee
Q 045210          650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIG---ERLSGIILLSLRANQFH  726 (873)
Q Consensus       650 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~---~~l~~L~~L~L~~n~l~  726 (873)
                      |++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+++ .+|...+   ..+++|+.|++++|+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            9999877778999999999999999999888999999999999999999998 6887764   34899999999999999


Q ss_pred             eeCCcccCCCCC--CCEEeCCCCccccc
Q 045210          727 GFFPPELCGLAS--LKILDLSSNNLTGV  752 (873)
Q Consensus       727 ~~~p~~l~~l~~--L~~L~Ls~N~l~~~  752 (873)
                      +..+..+..++.  ++.|+|++|++...
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccCC
Confidence            766667777776  48899999999854

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=2.3e-16  Score=158.76  Aligned_cols=137  Identities=21%  Similarity=0.208  Sum_probs=119.0

Q ss_pred             CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210          616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI  695 (873)
Q Consensus       616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  695 (873)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            56888888888888877888888889999999999987665566788999999999999998777777889999999999


Q ss_pred             cCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210          696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP  754 (873)
Q Consensus       696 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  754 (873)
                      ++|+++ .+|..+.. +++|+.|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus       120 s~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          120 CCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999998 88888865 9999999999999997777788999999999999999997654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=5.9e-19  Score=201.35  Aligned_cols=201  Identities=19%  Similarity=0.195  Sum_probs=152.7

Q ss_pred             CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCc-------------ccCCCChhhhccccCcEEE-cCCCcCc
Q 045210          588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT-------------LSGEIPDCWMNWSFLFFLH-LGENDFT  653 (873)
Q Consensus       588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-l~~n~l~  653 (873)
                      +.|+.|++++|.++ .+|..+    +++++|+.|++++|.             ..+.+|..++.+++|+.|+ ++.|.+ 
T Consensus       349 ~~L~~L~Ls~n~L~-~Lp~~i----~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-  422 (567)
T 1dce_A          349 EQLFRCELSVEKST-VLQSEL----ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-  422 (567)
T ss_dssp             TTSSSCCCCHHHHH-HHHHHH----HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred             ccceeccCChhhHH-hhHHHH----HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence            45666666666664 455544    448888999887765             5677888899999999998 666654 


Q ss_pred             cCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCccc
Q 045210          654 GNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPEL  733 (873)
Q Consensus       654 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l  733 (873)
                                ..|+.+.+++|.++...+      ..|+.|++++|.+++ +|. +.. +++|+.|++++|+++ .+|..+
T Consensus       423 ----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~-l~~L~~L~Ls~N~l~-~lp~~~  482 (567)
T 1dce_A          423 ----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ-LLLVTHLDLSHNRLR-ALPPAL  482 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG-GTTCCEEECCSSCCC-CCCGGG
T ss_pred             ----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc-cccCcEeecCccccc-ccchhh
Confidence                      345666777777764322      247888888888884 776 554 888899999998888 778888


Q ss_pred             CCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccC-Ch
Q 045210          734 CGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEI-PS  812 (873)
Q Consensus       734 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~i-p~  812 (873)
                      +.+++|+.|+|++|.+++ +| .++.+++|                                 +.|+|++|++++.+ |.
T Consensus       483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L---------------------------------~~L~Ls~N~l~~~~~p~  527 (567)
T 1dce_A          483 AALRCLEVLQASDNALEN-VD-GVANLPRL---------------------------------QELLLCNNRLQQSAAIQ  527 (567)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCSSC---------------------------------CEEECCSSCCCSSSTTG
T ss_pred             hcCCCCCEEECCCCCCCC-Cc-ccCCCCCC---------------------------------cEEECCCCCCCCCCCcH
Confidence            899999999999999986 66 66666655                                 78999999999876 89


Q ss_pred             hhhcCCCCCeeeCCCCcCcccCCcc---ccCCCCCCeEec
Q 045210          813 QVTNLVGLQTLKLSHNFFSGRIPVN---MGAMKSVEALDF  849 (873)
Q Consensus       813 ~l~~l~~L~~L~Ls~N~l~~~ip~~---l~~l~~L~~L~l  849 (873)
                      .++.+++|+.|+|++|++++..|..   +..+++|+.||+
T Consensus       528 ~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999999999999998765532   223788888874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4.9e-17  Score=167.29  Aligned_cols=170  Identities=21%  Similarity=0.271  Sum_probs=118.4

Q ss_pred             CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEE
Q 045210          615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD  694 (873)
Q Consensus       615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  694 (873)
                      +.++..++++++.+++..  .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|++++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            455777788888887443  5778888888888888887 355 57778888888888888875544  77888888888


Q ss_pred             ccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhc
Q 045210          695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFF  774 (873)
Q Consensus       695 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~  774 (873)
                      +++|++++ +|...   .++|+.|++++|++++.  +.+..+++|+.|++++|++++. | .++.+++|           
T Consensus        92 L~~N~l~~-l~~~~---~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L-----------  152 (263)
T 1xeu_A           92 VNRNRLKN-LNGIP---SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL-----------  152 (263)
T ss_dssp             CCSSCCSC-CTTCC---CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC-----------
T ss_pred             CCCCccCC-cCccc---cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCC-----------
Confidence            88888873 55422   16777777777777653  3466777777777777777643 3 34444333           


Q ss_pred             hhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc
Q 045210          775 EDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR  833 (873)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  833 (873)
                                            +.|++++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       153 ----------------------~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          153 ----------------------EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ----------------------CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ----------------------CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence                                  6777777777754  5567777777777777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=9.9e-17  Score=157.49  Aligned_cols=155  Identities=14%  Similarity=0.188  Sum_probs=98.9

Q ss_pred             hccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCc
Q 045210          637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGII  716 (873)
Q Consensus       637 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  716 (873)
                      ..+++|+.|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..|..+.. +++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-CCCCC
Confidence            45556666666666665 344 4556666666666666443  2235566666666666666666555555553 66666


Q ss_pred             EEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccc
Q 045210          717 LLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYL  796 (873)
Q Consensus       717 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  796 (873)
                      +|++++|++++..|..+..+++|+.|++++|++.+.+| .+..+++|                                 
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L---------------------------------  161 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL---------------------------------  161 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC---------------------------------
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC---------------------------------
Confidence            66666666666666667777788888888887333555 45544443                                 


Q ss_pred             eEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcc
Q 045210          797 KVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG  832 (873)
Q Consensus       797 ~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  832 (873)
                      +.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       162 ~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          162 KSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            788888888875 44 67888888888888888764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=4.5e-17  Score=167.62  Aligned_cols=146  Identities=23%  Similarity=0.286  Sum_probs=81.7

Q ss_pred             CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210          589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI  668 (873)
Q Consensus       589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  668 (873)
                      .+..++++++.+++..+      +..+++|+.|++++|.++. +| .+..+++|+.|++++|++++..+  +..+++|+.
T Consensus        20 ~l~~l~l~~~~i~~~~~------~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLVS------QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHTCSCTTSEEC------HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHhcCCCcccccc------hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            34445555555554321      2225566666666666652 33 45666666666666666664332  666666666


Q ss_pred             EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210          669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN  748 (873)
Q Consensus       669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  748 (873)
                      |++++|++++ +|.. .. ++|++|++++|++++ +| .+. .+++|+.|++++|++++. + .+..+++|+.|++++|+
T Consensus        90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSC
T ss_pred             EECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCc
Confidence            6666666654 2221 22 566666666666653 33 233 266666666666666643 2 45566666666666666


Q ss_pred             cccc
Q 045210          749 LTGV  752 (873)
Q Consensus       749 l~~~  752 (873)
                      +++.
T Consensus       162 i~~~  165 (263)
T 1xeu_A          162 ITNT  165 (263)
T ss_dssp             CCBC
T ss_pred             Ccch
Confidence            6643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=2.1e-17  Score=194.86  Aligned_cols=162  Identities=19%  Similarity=0.195  Sum_probs=123.8

Q ss_pred             EcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCee
Q 045210          646 HLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF  725 (873)
Q Consensus       646 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l  725 (873)
                      ++.+|.+. ..|..+..+++|+.|+|++|++. .+|..+..+++|++|+|++|.++ .+|..+.. +++|++|+|++|.+
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRL  282 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCC
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcC
Confidence            44455555 56788899999999999999998 78888889999999999999999 89998875 99999999999999


Q ss_pred             eeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCc
Q 045210          726 HGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANY  805 (873)
Q Consensus       726 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~  805 (873)
                      + .+|..+..+++|+.|+|++|.++ .+|..|+++++|                                 +.|+|++|.
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L---------------------------------~~L~L~~N~  327 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL---------------------------------QFLGVEGNP  327 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC---------------------------------CCEECTTSC
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc---------------------------------cEEeCCCCc
Confidence            9 78999999999999999999997 889888877776                                 889999999


Q ss_pred             ccccCChhhhcCCCC-CeeeCCCCcCcccCCccccCCCCCCeEeccCC
Q 045210          806 FSGEIPSQVTNLVGL-QTLKLSHNFFSGRIPVNMGAMKSVEALDFSSN  852 (873)
Q Consensus       806 l~~~ip~~l~~l~~L-~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  852 (873)
                      ++|.+|..+..+... ..++|++|.++|.+|..+      +.|++++|
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n  369 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTD  369 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecc
Confidence            999999988765332 358899999999998764      55667777

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=3.7e-16  Score=152.52  Aligned_cols=162  Identities=19%  Similarity=0.280  Sum_probs=96.9

Q ss_pred             cEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCC
Q 045210          667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS  746 (873)
Q Consensus       667 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  746 (873)
                      +.+++++|.++ .+|..+..  ++++|++++|.+++..+...+..+++|++|++++|++++..|..+..+++|+.|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56777777774 55554433  6777777777776443332223367777777777777766666677777777777777


Q ss_pred             CccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCC
Q 045210          747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLS  826 (873)
Q Consensus       747 N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls  826 (873)
                      |++++..|..++.+++|                                 +.|++++|++++.+|..++.+++|++|+|+
T Consensus        88 N~l~~~~~~~~~~l~~L---------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQL---------------------------------KTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             CCCCEECSSSSTTCTTC---------------------------------CEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CcCCccCHHHhcCCCCC---------------------------------CEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            77776666555555444                                 667777777776666667777777777777


Q ss_pred             CCcCcccCCccccCCCCCCeEeccCCccccccccccccC
Q 045210          827 HNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNL  865 (873)
Q Consensus       827 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l  865 (873)
                      +|.+.+..+... -...++...+..+......|..+.+.
T Consensus       135 ~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~l~~~  172 (192)
T 1w8a_A          135 SNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKVRDV  172 (192)
T ss_dssp             TCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTTTTS
T ss_pred             CCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChHHcCC
Confidence            777766554211 00112222344444455555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=4e-16  Score=152.24  Aligned_cols=173  Identities=18%  Similarity=0.217  Sum_probs=137.4

Q ss_pred             cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCc-ccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEcc
Q 045210          643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPV-SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR  721 (873)
Q Consensus       643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  721 (873)
                      +.+++++|.++ .+|..+..  +|++|++++|++++..+. .+..+++|++|++++|++++..|..+.. +++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECC
Confidence            78999999996 67876653  899999999999877665 4899999999999999999777877765 9999999999


Q ss_pred             CCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEEC
Q 045210          722 ANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDL  801 (873)
Q Consensus       722 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  801 (873)
                      +|++++..|..+..+++|+.|+|++|++++.+|..+..+++|                                 +.|++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------~~L~L  133 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL---------------------------------TSLNL  133 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC---------------------------------CEEEC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC---------------------------------CEEEe
Confidence            999999998889999999999999999999889888776665                                 89999


Q ss_pred             CCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210          802 SANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       802 s~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  856 (873)
                      ++|.+++..+-.. -...++...+..+......|..+.   .....++..+.+..
T Consensus       134 ~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~l~---~~~l~~l~~~~~~C  184 (192)
T 1w8a_A          134 ASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEFKC  184 (192)
T ss_dssp             TTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTTT---TSBGGGSCTTTCCC
T ss_pred             CCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChHHc---CCChhhCcHhhcCc
Confidence            9999998765221 111233345556666666676654   44555677777653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.5e-15  Score=143.34  Aligned_cols=137  Identities=22%  Similarity=0.220  Sum_probs=101.2

Q ss_pred             CCCcEEEccCCeec-ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchh
Q 045210          688 TELRLFDISENEFV-GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKE  766 (873)
Q Consensus       688 ~~L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~  766 (873)
                      ++|++|++++|.++ +.+|..+.. +++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..++.+++|   
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL---   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred             ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence            45666666666665 556665443 67777777777776654  567788888888888888887777777666665   


Q ss_pred             hcchhhhchhheeeecccceeccCCCCccceEEECCCCccccc-CChhhhcCCCCCeeeCCCCcCcccCC---ccccCCC
Q 045210          767 VLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE-IPSQVTNLVGLQTLKLSHNFFSGRIP---VNMGAMK  842 (873)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~  842 (873)
                                                    +.|++++|++++. .+..++.+++|++|++++|.+++..+   ..+..++
T Consensus        98 ------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  147 (168)
T 2ell_A           98 ------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP  147 (168)
T ss_dssp             ------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred             ------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence                                          7888888888853 22678888889999999998886554   4778888


Q ss_pred             CCCeEeccCCccccccccc
Q 045210          843 SVEALDFSSNRLQGEIPKN  861 (873)
Q Consensus       843 ~L~~L~ls~N~l~g~iP~~  861 (873)
                      +|+.||+++|.+. ++|+.
T Consensus       148 ~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          148 QLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             SCCEETTEETTSC-BCCSS
T ss_pred             cCcEecCCCCChh-hcccc
Confidence            8999999998877 45543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.4e-15  Score=140.30  Aligned_cols=126  Identities=21%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             ccCcEEEccCCeee-eeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCC
Q 045210          713 SGIILLSLRANQFH-GFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIG  791 (873)
Q Consensus       713 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (873)
                      ++++.|++++|.+. +.+|..+..+++|+.|++++|.+++.  ..++.+++                             
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~-----------------------------   65 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK-----------------------------   65 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT-----------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC-----------------------------
Confidence            45555555555555 45555555566666666666666533  23333332                             


Q ss_pred             CCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc-CCccccCCCCCCeEeccCCccccccc---cccccCCC
Q 045210          792 YPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR-IPVNMGAMKSVEALDFSSNRLQGEIP---KNMVNLEF  867 (873)
Q Consensus       792 ~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~g~iP---~~l~~l~~  867 (873)
                          |+.|++++|.+++.+|..++.+++|++|++++|.+++. .|..++.+++|+.|++++|++++..|   ..+..++.
T Consensus        66 ----L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  141 (149)
T 2je0_A           66 ----LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ  141 (149)
T ss_dssp             ----CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred             ----CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence                35666666666655566555666666666666666652 33556666666666666666665444   35566666


Q ss_pred             CCcccC
Q 045210          868 LEIFNI  873 (873)
Q Consensus       868 L~~l~l  873 (873)
                      |++||+
T Consensus       142 L~~L~l  147 (149)
T 2je0_A          142 LTYLDG  147 (149)
T ss_dssp             CCEETT
T ss_pred             cccccC
Confidence            666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=4.6e-15  Score=141.51  Aligned_cols=136  Identities=21%  Similarity=0.214  Sum_probs=105.7

Q ss_pred             CCCCceEeccCCccc-CCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEE
Q 045210          615 SMRLQVLNLGNNTLS-GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF  693 (873)
Q Consensus       615 ~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  693 (873)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            466888888888887 67777778888888888888888755  667788888888888888887777777778888888


Q ss_pred             EccCCeecccCC--hhHHhhcccCcEEEccCCeeeeeCC---cccCCCCCCCEEeCCCCccccccCh
Q 045210          694 DISENEFVGNIP--TWIGERLSGIILLSLRANQFHGFFP---PELCGLASLKILDLSSNNLTGVIPR  755 (873)
Q Consensus       694 ~Ls~n~l~~~ip--~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~ip~  755 (873)
                      ++++|.+++ +|  ..+. .+++|+.|++++|++++..+   ..+..+++|+.|++++|.+. .+|.
T Consensus       101 ~Ls~N~l~~-~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLKD-ISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCCS-SGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccCc-chhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            888888874 44  4444 38888888888888886554   47788888999999888876 4554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=3.3e-15  Score=139.28  Aligned_cols=128  Identities=18%  Similarity=0.195  Sum_probs=86.7

Q ss_pred             CCCcEEEccCCeec-ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchh
Q 045210          688 TELRLFDISENEFV-GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKE  766 (873)
Q Consensus       688 ~~L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~  766 (873)
                      ++|+.|++++|.++ +.+|..+.. +++|+.|++++|++++.  ..+..+++|+.|++++|.+++.+|..++.+++|   
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L---   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL---   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC---
T ss_pred             ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC---
Confidence            34455555555554 444443332 55555555555555544  456777888888888888887677766666655   


Q ss_pred             hcchhhhchhheeeecccceeccCCCCccceEEECCCCccccc-CChhhhcCCCCCeeeCCCCcCcccCC---ccccCCC
Q 045210          767 VLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE-IPSQVTNLVGLQTLKLSHNFFSGRIP---VNMGAMK  842 (873)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~  842 (873)
                                                    +.|++++|++++. .|..++.+++|++|++++|.+++..+   ..++.++
T Consensus        91 ------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  140 (149)
T 2je0_A           91 ------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP  140 (149)
T ss_dssp             ------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT
T ss_pred             ------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC
Confidence                                          7888888888763 44778888888888888888886655   4677888


Q ss_pred             CCCeEeccC
Q 045210          843 SVEALDFSS  851 (873)
Q Consensus       843 ~L~~L~ls~  851 (873)
                      +|+.||+++
T Consensus       141 ~L~~L~l~d  149 (149)
T 2je0_A          141 QLTYLDGYD  149 (149)
T ss_dssp             TCCEETTBC
T ss_pred             CcccccCCC
Confidence            888888763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.6e-14  Score=138.95  Aligned_cols=133  Identities=19%  Similarity=0.207  Sum_probs=95.9

Q ss_pred             CcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcc
Q 045210          690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLE  769 (873)
Q Consensus       690 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~  769 (873)
                      .+.+++++|+++ .+|..+   .++|+.|++++|++.+..+..+..+++|+.|++++|.+++..+..++.+++|      
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence            356677777766 566543   4577777777777776666667777888888888888875555555555544      


Q ss_pred             hhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEec
Q 045210          770 VDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDF  849 (873)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l  849 (873)
                                                 +.|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        79 ---------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           79 ---------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             ---------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ---------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence                                       77888888888666666778888888888888888655555677888888888


Q ss_pred             cCCccccccc
Q 045210          850 SSNRLQGEIP  859 (873)
Q Consensus       850 s~N~l~g~iP  859 (873)
                      ++|++.+..|
T Consensus       132 ~~N~~~~~~~  141 (177)
T 2o6r_A          132 HTNPWDCSCP  141 (177)
T ss_dssp             CSSCBCCCHH
T ss_pred             cCCCeeccCc
Confidence            8888887665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=140.89  Aligned_cols=127  Identities=19%  Similarity=0.317  Sum_probs=69.3

Q ss_pred             cEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCC
Q 045210          667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS  746 (873)
Q Consensus       667 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  746 (873)
                      +.+++++|.++ .+|..+.  ++|++|++++|.++ .+|..+.. +++|+.|++++|++++..+..+..+++|+.|+|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            45666666655 4444332  45666666666665 55544443 55666666666666555555555555566666666


Q ss_pred             CccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCC
Q 045210          747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLS  826 (873)
Q Consensus       747 N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls  826 (873)
                      |.+++..|..|..+++|                                 +.|+|++|++++..+..+..+++|+.|+++
T Consensus        88 N~l~~i~~~~f~~l~~L---------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSL---------------------------------RLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             SCCCBCCTTTTTTCTTC---------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CccCEeCHHHhCCCCCC---------------------------------CEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            55555444444444433                                 455555555554333345555555555555


Q ss_pred             CCcCc
Q 045210          827 HNFFS  831 (873)
Q Consensus       827 ~N~l~  831 (873)
                      +|++.
T Consensus       135 ~N~~~  139 (193)
T 2wfh_A          135 ANPLY  139 (193)
T ss_dssp             SSCEE
T ss_pred             CCCee
Confidence            55554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=6.7e-15  Score=157.23  Aligned_cols=238  Identities=13%  Similarity=0.070  Sum_probs=123.2

Q ss_pred             CCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccC--------CCCCcEEECCCCCCCCCccCccc
Q 045210          120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGN--------LSNLQFLDLRPNYLGGLYVEDFG  191 (873)
Q Consensus       120 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~l~~~~~~  191 (873)
                      +++|++|||++|++.....+  -+.++.++.+.+..+.   ..+..|.+        |++|+.+++.+ .++.++...  
T Consensus        48 l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a--  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA--  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT--
T ss_pred             hccCeEEecCcceeEEecCc--cccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHH--
Confidence            78899999999988721111  1112223444444442   12234555        77777777776 666666554  


Q ss_pred             cccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCC----CCCCCCccccCCCCCcc-EEEcCCCCCCCCchhH
Q 045210          192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC----LLHHISPLSFANFSSLV-TLDISDNQFADSSIVN  266 (873)
Q Consensus       192 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~  266 (873)
                       +.++++|+.+++++|.+..++..  .+..+.++..+.....    ....+...+|.++..|+ .+.+...    +.++.
T Consensus       120 -F~~~~~L~~l~l~~n~i~~i~~~--aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~----~~l~~  192 (329)
T 3sb4_A          120 -FKGCDNLKICQIRKKTAPNLLPE--ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM----GKLED  192 (329)
T ss_dssp             -TTTCTTCCEEEBCCSSCCEECTT--SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT----CCHHH
T ss_pred             -hhcCcccceEEcCCCCccccchh--hhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC----CcHHH
Confidence             35566666666666666555432  3344555555544432    12333444555555555 3444322    11222


Q ss_pred             hh----------------------------cCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhc
Q 045210          267 QV----------------------------LGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNK  318 (873)
Q Consensus       267 ~~----------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~  318 (873)
                      .+                            ..+++|+++++++|+++...+.+|.+|++|+++++.+| +....+.+|.+
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~  271 (329)
T 3sb4_A          193 EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN  271 (329)
T ss_dssp             HHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             HHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC
Confidence            11                            12455555555555555444445555555555555554 44334445555


Q ss_pred             CCCcC-EEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEE
Q 045210          319 FIDLE-YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVN  374 (873)
Q Consensus       319 l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  374 (873)
                      +++|+ .+++.+ .++...+.+|.+|++|+.++++.|+++...+.+|.++++|+.++
T Consensus       272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            55555 555555 44434445555555555555555555544445555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=2.2e-14  Score=153.22  Aligned_cols=218  Identities=11%  Similarity=0.022  Sum_probs=137.0

Q ss_pred             CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcc----cccCCcccccCCCC
Q 045210          615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF----SGKIPVSLQNCTEL  690 (873)
Q Consensus       615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L  690 (873)
                      |++|+.+++.+ .++...+.+|.+|++|+.+++++|.+....+..|.++.++..+.+..+..    .......|.+|..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            88899999988 77767777899999999999999988877777888888888777766432    22334556677777


Q ss_pred             c-EEEccCCeecccCChhHHhh---cccCcEEEccCCeeeeeCCccc-CCCCCCCEEeCCCCccccccChhhhhhhcCch
Q 045210          691 R-LFDISENEFVGNIPTWIGER---LSGIILLSLRANQFHGFFPPEL-CGLASLKILDLSSNNLTGVIPRCINNLAGMAK  765 (873)
Q Consensus       691 ~-~L~Ls~n~l~~~ip~~~~~~---l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  765 (873)
                      + .+++....   .+|..++..   ..++..+.+.++-.... ...+ ..+++|+.+++++|.++..-+.+|.++.+|  
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L--  252 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNAD-FKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL--  252 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHH-HHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC--
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHH-HHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC--
Confidence            7 55554432   334443321   34455555544321111 0111 125677777777777663333456655554  


Q ss_pred             hhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCC-eeeCCCCcCcccCCccccCCCCC
Q 045210          766 EVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQ-TLKLSHNFFSGRIPVNMGAMKSV  844 (873)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L  844 (873)
                                                     +.|++++| ++..-+..|.++++|+ .+++.+ .++..-+.+|.++++|
T Consensus       253 -------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          253 -------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             -------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             -------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence                                           66777766 5544445567777777 777776 5554445667777777


Q ss_pred             CeEeccCCccccccccccccCCCCCccc
Q 045210          845 EALDFSSNRLQGEIPKNMVNLEFLEIFN  872 (873)
Q Consensus       845 ~~L~ls~N~l~g~iP~~l~~l~~L~~l~  872 (873)
                      +.+++++|.+...-+..+.++++|+.++
T Consensus       300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          300 RYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEEeCCCccCccchhhhcCCcchhhhc
Confidence            7777777777754455667777776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=5.9e-16  Score=152.07  Aligned_cols=155  Identities=19%  Similarity=0.217  Sum_probs=116.1

Q ss_pred             ccCCCCccEEEccCCcccccCCc------ccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCccc
Q 045210          660 LGTLSSLQILHLRGNRFSGKIPV------SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPEL  733 (873)
Q Consensus       660 l~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l  733 (873)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+.. +++|+.|++++|+++ .+|..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-MENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-HTTCCEEEEEEEEEC-SCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-CCCCCEEECCCCCcc-cccchh
Confidence            44566777888888888877776      78888888888888888884 77 5554 888888888888887 566666


Q ss_pred             CCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCC-h
Q 045210          734 CGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIP-S  812 (873)
Q Consensus       734 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip-~  812 (873)
                      ..+++|+.|++++|.+++ +| .++.+++|                                 +.|++++|++++..+ .
T Consensus        90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L---------------------------------~~L~l~~N~i~~~~~~~  134 (198)
T 1ds9_A           90 AVADTLEELWISYNQIAS-LS-GIEKLVNL---------------------------------RVLYMSNNKITNWGEID  134 (198)
T ss_dssp             HHHHHCSEEEEEEEECCC-HH-HHHHHHHS---------------------------------SEEEESEEECCCHHHHH
T ss_pred             hcCCcCCEEECcCCcCCc-CC-ccccCCCC---------------------------------CEEECCCCcCCchhHHH
Confidence            667888888888888875 44 46655554                                 788888888874222 4


Q ss_pred             hhhcCCCCCeeeCCCCcCcccCCcc----------ccCCCCCCeEeccCCccc
Q 045210          813 QVTNLVGLQTLKLSHNFFSGRIPVN----------MGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       813 ~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~  855 (873)
                      .+..+++|++|++++|.+++.+|..          +..+++|+.||  +|+++
T Consensus       135 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            6788888888888888888776653          67788888877  66655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=1.4e-13  Score=132.34  Aligned_cols=133  Identities=20%  Similarity=0.201  Sum_probs=102.7

Q ss_pred             CceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210          618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE  697 (873)
Q Consensus       618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  697 (873)
                      .+.+++++++++ .+|..+  .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            456777777776 344333  36788888888888866666678888888888888888876667778888888888888


Q ss_pred             CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210          698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP  754 (873)
Q Consensus       698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  754 (873)
                      |++++ +|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus        86 N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88884 444433348889999999999886666667889999999999999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=8.7e-16  Score=150.86  Aligned_cols=156  Identities=21%  Similarity=0.238  Sum_probs=119.7

Q ss_pred             hhccccCcEEEcCCCcCccCCcc------cccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHH
Q 045210          636 WMNWSFLFFLHLGENDFTGNLPT------SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIG  709 (873)
Q Consensus       636 l~~l~~L~~L~l~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~  709 (873)
                      +.....++.++++.+.+.+.+|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            55667788888888888877776      78888888999998888886 66 7888888999999988888 7887665


Q ss_pred             hhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC-hhhhhhhcCchhhcchhhhchhheeeecccceec
Q 045210          710 ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP-RCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKY  788 (873)
Q Consensus       710 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~  788 (873)
                      . +++|+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++                          
T Consensus        91 ~-~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~--------------------------  141 (198)
T 1ds9_A           91 V-ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK--------------------------  141 (198)
T ss_dssp             H-HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT--------------------------
T ss_pred             c-CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCC--------------------------
Confidence            4 7888899999888886 34 57778888899998888874322 24444444                          


Q ss_pred             cCCCCccceEEECCCCcccccCChh----------hhcCCCCCeeeCCCCcCcc
Q 045210          789 PIGYPYYLKVLDLSANYFSGEIPSQ----------VTNLVGLQTLKLSHNFFSG  832 (873)
Q Consensus       789 ~~~~~~~L~~L~ls~n~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~~  832 (873)
                             |+.|++++|.+++.+|..          +..+++|+.||  +|.++.
T Consensus       142 -------L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          142 -------LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             -------CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             -------CCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence                   478888888888776653          78888888887  666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=5.1e-13  Score=130.02  Aligned_cols=128  Identities=24%  Similarity=0.286  Sum_probs=79.9

Q ss_pred             CeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCC
Q 045210          570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE  649 (873)
Q Consensus       570 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~  649 (873)
                      +.++++++.++......++++++|++++|.++ .+|..    +.++++|+.|++++|.+++..+..|.++++|++|++++
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKE----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGG----GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHH----hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            45556666555433334556666666666665 33332    34466677777777777666666666677777777777


Q ss_pred             CcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecc
Q 045210          650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG  702 (873)
Q Consensus       650 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  702 (873)
                      |++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            77766666666666777777777777665555556666666666666666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.4e-13  Score=132.10  Aligned_cols=134  Identities=19%  Similarity=0.218  Sum_probs=95.4

Q ss_pred             cccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcC
Q 045210          684 LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGM  763 (873)
Q Consensus       684 l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  763 (873)
                      +.++.+|++|++++|.++ .+|. +....++|+.|++++|++++.  +.+..+++|+.|++++|.+++..|..++.+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            445666666666666666 4543 333234777777777777765  567788888888888888885444444665554


Q ss_pred             chhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCCh--hhhcCCCCCeeeCCCCcCcccCCcc----
Q 045210          764 AKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPS--QVTNLVGLQTLKLSHNFFSGRIPVN----  837 (873)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~ip~~----  837 (873)
                                                       +.|++++|+++ .+|.  .++.+++|++|++++|.++ .+|..    
T Consensus        91 ---------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~  135 (176)
T 1a9n_A           91 ---------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYV  135 (176)
T ss_dssp             ---------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHH
T ss_pred             ---------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHH
Confidence                                             78888888885 5666  7888888888888888887 45664    


Q ss_pred             ccCCCCCCeEeccCCcccc
Q 045210          838 MGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       838 l~~l~~L~~L~ls~N~l~g  856 (873)
                      ++.+++|+.||+++|....
T Consensus       136 ~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          136 IYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HHHCTTCSEETTEECCHHH
T ss_pred             HHHCCccceeCCCcCCHHH
Confidence            7788888888888887653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.40  E-value=5.1e-12  Score=137.59  Aligned_cols=240  Identities=16%  Similarity=0.181  Sum_probs=121.3

Q ss_pred             CCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCC
Q 045210          147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLE  226 (873)
Q Consensus       147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~  226 (873)
                      +|+.+.+..+ +...-..+|.++ +|+.+++.. .+..+....   +.++++|+.+++++|.++.++...+.   +.+|+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a---F~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~  206 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI---FYYCYNLKKADLSKTKITKLPASTFV---YAGIE  206 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST---TTTCTTCCEEECTTSCCSEECTTTTT---TCCCS
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH---hhCcccCCeeecCCCcceEechhhEe---ecccC
Confidence            4555555443 333333444443 455555553 344443332   34555555555555555555433222   35566


Q ss_pred             EEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhH-hhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCC
Q 045210          227 TLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN-QVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSR  305 (873)
Q Consensus       227 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  305 (873)
                      .+.+.. .+..+...+|.++++|+.+++..+ +.  .+.. .+.+ .+|+.+.+. +.++..-..+|.+|++|+.+++.+
T Consensus       207 ~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~--~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          207 EVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS--TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             EEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC--EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred             EEEeCC-chheehhhHhhCCCCCCEEecCCC-cc--Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence            666653 255555566666666666666553 21  1221 2223 456666663 334434455566666666666655


Q ss_pred             CCCC-----CCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 045210          306 NHFS-----SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL  380 (873)
Q Consensus       306 n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  380 (873)
                      +.+.     ...+..|..+++|+.+.+.. .++..-..+|.+|++|+.+.+..+ ++.....+|.++ +|+.+++.+|..
T Consensus       281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            5443     23344556666666666663 344444555666666666666433 444444556666 666666666655


Q ss_pred             cchhhHHHHHhhhcccccccEEEccCcc
Q 045210          381 SQEISQVLDMFSACASNVLESLDLSNNT  408 (873)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~  408 (873)
                      .......+..   ++ ..++.|.+..+.
T Consensus       358 ~~l~~~~F~~---~~-~~l~~l~vp~~~  381 (401)
T 4fdw_A          358 PQVFEKVWYG---FP-DDITVIRVPAES  381 (401)
T ss_dssp             CBCCCSSCCC---SC-TTCCEEEECGGG
T ss_pred             cccccccccC---CC-CCccEEEeCHHH
Confidence            4433332221   11 125666665544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=3.8e-13  Score=129.12  Aligned_cols=132  Identities=16%  Similarity=0.168  Sum_probs=102.8

Q ss_pred             cccCCCCceEeccCCcccCCCChhhhccc-cCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCC
Q 045210          612 MNNSMRLQVLNLGNNTLSGEIPDCWMNWS-FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL  690 (873)
Q Consensus       612 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  690 (873)
                      +.++++|+.|++++|+++. +|. +..+. +|+.|++++|++++.  ..+..+++|++|++++|++++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            3446778888888888874 454 44444 888999999888864  578888899999999998886655556888899


Q ss_pred             cEEEccCCeecccCCh--hHHhhcccCcEEEccCCeeeeeCCcc----cCCCCCCCEEeCCCCccc
Q 045210          691 RLFDISENEFVGNIPT--WIGERLSGIILLSLRANQFHGFFPPE----LCGLASLKILDLSSNNLT  750 (873)
Q Consensus       691 ~~L~Ls~n~l~~~ip~--~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~  750 (873)
                      ++|++++|++. .+|.  .+. .+++|+.|++++|++. .+|..    +..+++|+.||+++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999885 6776  555 3888999999999887 45553    788899999999988775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.38  E-value=8e-12  Score=136.04  Aligned_cols=219  Identities=11%  Similarity=0.158  Sum_probs=122.4

Q ss_pred             CCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEEC
Q 045210          224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL  303 (873)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  303 (873)
                      +|+.+.+.. .+..+...+|.+|++|+.+++..|.+.  .++.....+.+|+.+.+..+ ++..-..+|.++++|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT--KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS--EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce--EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            455555554 555556666777777777777766663  33443334567777777633 55445566777777777777


Q ss_pred             CCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCC-----CcchhhhhcCCCCCEEEccCC
Q 045210          304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE-----SKIPRAFKRLRHLRSVNLSGN  378 (873)
Q Consensus       304 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n  378 (873)
                      ..+ ++.....+|.+ .+|+.+.+. +.++.....+|.+|++|+.+.+.++.+.     .....+|.++++|+.+.+.+ 
T Consensus       234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-  309 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-  309 (401)
T ss_dssp             CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred             CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence            654 33333445555 667777773 3444455566777777777777666553     23345566666655555542 


Q ss_pred             cCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCC
Q 045210          379 KLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN  458 (873)
Q Consensus       379 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  458 (873)
                      .++                             .....+|.+|++|+.+.+..+ ++..-...|.++ +|+.+++.+|...
T Consensus       310 ~i~-----------------------------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          310 SIR-----------------------------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TCC-----------------------------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             ceE-----------------------------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            122                             222334555555666555433 333334455555 5666666555544


Q ss_pred             cccChhhhhccc-ccceEEcCCCee
Q 045210          459 GTLSENHFANLT-KLVGFDASGNSL  482 (873)
Q Consensus       459 ~~~~~~~~~~l~-~L~~L~l~~n~~  482 (873)
                       .++...|.+++ .++.+.+..+..
T Consensus       359 -~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          359 -QVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             -BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             -ccccccccCCCCCccEEEeCHHHH
Confidence             33333455543 455555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=2.2e-12  Score=122.72  Aligned_cols=67  Identities=28%  Similarity=0.294  Sum_probs=34.3

Q ss_pred             CcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhh
Q 045210          690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNL  760 (873)
Q Consensus       690 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  760 (873)
                      .+.+++++|.++ .+|..+   .++++.|++++|++++..|..+..+++|+.|+|++|++++..|..|..+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l   77 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL   77 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence            355666666665 455443   2455555555555555545555555555555555555553333333333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.36  E-value=1.4e-11  Score=134.96  Aligned_cols=221  Identities=11%  Similarity=0.087  Sum_probs=105.6

Q ss_pred             cccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCC
Q 045210          415 NQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPP  494 (873)
Q Consensus       415 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  494 (873)
                      .+|..|++|+.+.+.++. .......|.++++|+.+.+..+ ++ .+....|.++..|+.+.+..+....   .....  
T Consensus       156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i---~~~~~--  227 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYL---GDFAL--  227 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEE---CTTTT--
T ss_pred             hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEe---ehhhc--
Confidence            356667777777776543 2233445667777777777655 22 5555667777777766665543221   11111  


Q ss_pred             ccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeC
Q 045210          495 FQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDL  574 (873)
Q Consensus       495 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  574 (873)
                                            ...+|+.+.+....  ..+....+..+..++.+.+..+...-....+..+..++.+..
T Consensus       228 ----------------------~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~  283 (394)
T 4fs7_A          228 ----------------------SKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY  283 (394)
T ss_dssp             ----------------------TTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred             ----------------------ccCCCceEEECCCc--eecccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence                                  12233333333221  123333344445555555544432211113444444444433


Q ss_pred             CCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCcc
Q 045210          575 SSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTG  654 (873)
Q Consensus       575 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  654 (873)
                      ....+...                            .+..+.+|+.+.+.++ +...-..+|.+|++|+.+++.++ ++.
T Consensus       284 ~~~~i~~~----------------------------~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~  333 (394)
T 4fs7_A          284 GSVIVPEK----------------------------TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE  333 (394)
T ss_dssp             CSSEECTT----------------------------TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred             Cceeeccc----------------------------cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE
Confidence            33221111                            1223445555555433 33233445555555555555433 332


Q ss_pred             CCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCC
Q 045210          655 NLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN  698 (873)
Q Consensus       655 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  698 (873)
                      .-..+|.++.+|+.+++..+ ++.....+|.+|++|+.+++..+
T Consensus       334 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          334 IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            33345555666666666544 44444555666666666665443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=6.2e-12  Score=119.94  Aligned_cols=104  Identities=24%  Similarity=0.278  Sum_probs=56.9

Q ss_pred             cEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcch
Q 045210          691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEV  770 (873)
Q Consensus       691 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~  770 (873)
                      +.+++++|++. .+|..+   .++|+.|++++|++.+..|..+..+++|+.|+|++|++++..+..|..+++|       
T Consensus        15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-------   83 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL-------   83 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh-------
Confidence            56667777665 566544   2556666666666665555555556666666666665554333333433333       


Q ss_pred             hhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc
Q 045210          771 DKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS  831 (873)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~  831 (873)
                                                +.|||++|++++..+..+..+++|++|+|++|++.
T Consensus        84 --------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           84 --------------------------TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             --------------------------CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             --------------------------hEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence                                      45555555555433333555555555555555555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=7.5e-12  Score=119.00  Aligned_cols=109  Identities=21%  Similarity=0.268  Sum_probs=83.2

Q ss_pred             CcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEcc
Q 045210          642 LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR  721 (873)
Q Consensus       642 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  721 (873)
                      .+.+++++|+++ .+|..+.  ++|++|++++|++++..|..|..+++|++|++++|+++ .+|...+..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence            456677777766 3565543  67788888888888777777888888888888888887 4555554458888888888


Q ss_pred             CCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210          722 ANQFHGFFPPELCGLASLKILDLSSNNLTGVIP  754 (873)
Q Consensus       722 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  754 (873)
                      +|++++..+..+..+++|+.|+|++|++++..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            888887777778899999999999999986654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.29  E-value=5.8e-11  Score=130.03  Aligned_cols=313  Identities=14%  Similarity=0.160  Sum_probs=153.1

Q ss_pred             ccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccc
Q 045210          114 NPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWV  193 (873)
Q Consensus       114 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l  193 (873)
                      ..+|.++++|+.+.+..+ ++.+ -..+|.+|++|+.+++.++ +...-..+|.++++|+.+.+..+ +..+....|   
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF---  136 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF---  136 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT---
T ss_pred             HHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee---
Confidence            456888888888888643 5443 2456778888888888754 44444556777888877766543 333333332   


Q ss_pred             cCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCC
Q 045210          194 SHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVN  273 (873)
Q Consensus       194 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  273 (873)
                      .++..++.........  +.  ...+..+++|+.+.+.++ +..+...+|.++.+|+.+++..+                
T Consensus       137 ~~~~~~~~~~~~~~~~--i~--~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~----------------  195 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTV--IG--DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN----------------  195 (394)
T ss_dssp             TTCCCSEEECCTTCCE--EC--TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT----------------
T ss_pred             ecccccccccCccccc--cc--hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC----------------
Confidence            2222222221111110  00  112344444555544322 23333444444444444444433                


Q ss_pred             CcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCC
Q 045210          274 LVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSF  353 (873)
Q Consensus       274 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  353 (873)
                                ++.....++.++..|+.+.+..+...  +........+|+.+.+... ++......+..+..++.+.+..
T Consensus       196 ----------~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          196 ----------LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN  262 (394)
T ss_dssp             ----------CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred             ----------ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC
Confidence                      22122333444444444444333211  1122223344444444322 1112223344455555555544


Q ss_pred             CcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCcc
Q 045210          354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNI  433 (873)
Q Consensus       354 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  433 (873)
                      +.. ......+..+..++.+......+...   .   +..+  ..|+.+.+..+ +......+|.+|.+|+.+++..+ +
T Consensus       263 ~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~---~---F~~~--~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v  331 (394)
T 4fs7_A          263 NKL-RIGGSLFYNCSGLKKVIYGSVIVPEK---T---FYGC--SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V  331 (394)
T ss_dssp             TTC-EECSCTTTTCTTCCEEEECSSEECTT---T---TTTC--TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred             Ccc-eeeccccccccccceeccCceeeccc---c---cccc--ccccccccccc-cceechhhhcCCCCCCEEEeCCc-c
Confidence            322 12233444445555544443322110   0   1111  12555555443 33333456677777777777643 4


Q ss_pred             CccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCC
Q 045210          434 SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN  480 (873)
Q Consensus       434 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  480 (873)
                      +.....+|.+|++|+.+.+..+ ++ .++..+|.+|.+|+.+++..+
T Consensus       332 ~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          332 EEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             cEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence            4334556777777777777665 43 566667777777777777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=2.1e-13  Score=147.02  Aligned_cols=188  Identities=16%  Similarity=0.076  Sum_probs=114.4

Q ss_pred             cccCcEEEcCCCcCccCCccccc-----CCCCccEEEccCCcccccCCccc-ccCCCCcEEEccCCeecccCChhHHhh-
Q 045210          639 WSFLFFLHLGENDFTGNLPTSLG-----TLSSLQILHLRGNRFSGKIPVSL-QNCTELRLFDISENEFVGNIPTWIGER-  711 (873)
Q Consensus       639 l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~ip~~~~~~-  711 (873)
                      ++.|+.|++++|.++......+.     ..++|+.|+|++|.++......+ ..+++|+.|+|++|.+++.....+... 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46788999999998754333332     23688899999988865433333 245678888888888875444444332 


Q ss_pred             ---cccCcEEEccCCeeee----eCCcccCCCCCCCEEeCCCCccccccChhhhh-hhcCchhhcchhhhchhheeeecc
Q 045210          712 ---LSGIILLSLRANQFHG----FFPPELCGLASLKILDLSSNNLTGVIPRCINN-LAGMAKEVLEVDKFFEDALIVYKK  783 (873)
Q Consensus       712 ---l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~L~~~~~~~~~~~~~~~~~~~~  783 (873)
                         .++|+.|+|++|.++.    .++..+...++|+.|||++|.+++.-...+.. +..                     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~---------------------  209 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR---------------------  209 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG---------------------
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc---------------------
Confidence               4678888888888764    23344466778888888888876432111111 011                     


Q ss_pred             cceeccCCCCccceEEECCCCcccc----cCChhhhcCCCCCeeeCCCCcCcccCCccccCC---CC--CCeEe--ccCC
Q 045210          784 KVVKYPIGYPYYLKVLDLSANYFSG----EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM---KS--VEALD--FSSN  852 (873)
Q Consensus       784 ~~~~~~~~~~~~L~~L~ls~n~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l---~~--L~~L~--ls~N  852 (873)
                               ++.|+.|||++|.++.    .++..+...++|++|+|++|.+++.-...+..+   ..  |+.+.  +..|
T Consensus       210 ---------~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~  280 (372)
T 3un9_A          210 ---------NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT  280 (372)
T ss_dssp             ---------CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC---
T ss_pred             ---------CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC
Confidence                     2345788888888765    244455566788888888888875544433322   11  55555  5566


Q ss_pred             cccc
Q 045210          853 RLQG  856 (873)
Q Consensus       853 ~l~g  856 (873)
                      .++.
T Consensus       281 ~~~~  284 (372)
T 3un9_A          281 AVSE  284 (372)
T ss_dssp             -CHH
T ss_pred             ccCH
Confidence            5553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=7.1e-13  Score=142.93  Aligned_cols=165  Identities=19%  Similarity=0.235  Sum_probs=92.0

Q ss_pred             CCCCEEEccCCCCCCCCccccC-----CCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhh-----
Q 045210          223 HSLETLRFSGCLLHHISPLSFA-----NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI-----  292 (873)
Q Consensus       223 ~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----  292 (873)
                      +.|++|++++|.++......+.     ..++|++|+|++|.+++.........+++|++|+|++|.+++.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4555666666655543333322     225777777777777533333333345567777777777664333333     


Q ss_pred             cCCCCCCEEECCCCCCCCC----CchhhhcCCCcCEEEccCCcCCcc----CcccccCCCCCCEEeCCCCcCCCc----c
Q 045210          293 QNSTSLQHLDLSRNHFSSS----VPDWFNKFIDLEYLSLSYNELQGS----IPGSLGNLTSIKSLDLSFNRLESK----I  360 (873)
Q Consensus       293 ~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~  360 (873)
                      ...++|++|++++|.++..    ++..+..+++|++|+|++|.+++.    ++..+...++|++|++++|.+++.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2356677777777766532    333345566677777777766532    234455556666666666666542    2


Q ss_pred             hhhhhcCCCCCEEEccCCcCcchhhHH
Q 045210          361 PRAFKRLRHLRSVNLSGNKLSQEISQV  387 (873)
Q Consensus       361 ~~~l~~l~~L~~L~L~~n~l~~~~~~~  387 (873)
                      ...+...++|++|++++|.++......
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~  258 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQV  258 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence            333445566666666666665544443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=1.5e-11  Score=117.18  Aligned_cols=106  Identities=19%  Similarity=0.253  Sum_probs=80.1

Q ss_pred             cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccC
Q 045210          643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA  722 (873)
Q Consensus       643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~  722 (873)
                      +.+++++|++. .+|..+.  ++|+.|++++|++++..|..|.++++|++|+|++|+++ .+|...+..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence            46666666665 5565553  67777788888777777777777888888888888877 46665544588888888888


Q ss_pred             CeeeeeCCcccCCCCCCCEEeCCCCccccc
Q 045210          723 NQFHGFFPPELCGLASLKILDLSSNNLTGV  752 (873)
Q Consensus       723 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  752 (873)
                      |++++..+..+..+++|+.|+|++|++...
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            888866666688899999999999999854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=2.6e-10  Score=122.59  Aligned_cols=105  Identities=20%  Similarity=0.203  Sum_probs=73.2

Q ss_pred             EEEccCC-eecccCChhHHhhcccCcEEEccC-CeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcc
Q 045210          692 LFDISEN-EFVGNIPTWIGERLSGIILLSLRA-NQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLE  769 (873)
Q Consensus       692 ~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~  769 (873)
                      .++++++ +++ .+|. +.. +++|+.|+|++ |++.+..|..|..+++|+.|+|++|.|++..|..|+++++|      
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L------   82 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL------   82 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC------
T ss_pred             EEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC------
Confidence            4577777 776 5777 553 77778888875 77777776777777777777777777777777666666655      


Q ss_pred             hhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc
Q 045210          770 VDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR  833 (873)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  833 (873)
                                                 +.|||++|+|++..|..+..++ |+.|+|++|.+...
T Consensus        83 ---------------------------~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           83 ---------------------------SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             ---------------------------CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             ---------------------------CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence                                       6777777777754444444444 77777777777643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.02  E-value=1.2e-08  Score=111.45  Aligned_cols=131  Identities=15%  Similarity=0.198  Sum_probs=76.8

Q ss_pred             ccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCC
Q 045210          414 TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTP  493 (873)
Q Consensus       414 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  493 (873)
                      ..+|..|..|+.+.+..+... .....|.+++.|+.+.+.. .++ .++...|.+|.+|+.+.+..+--           
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~v~-----------  323 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEGIT-----------  323 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTTCC-----------
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCccc-----------
Confidence            345677778888877655432 3345677778888887753 333 56666777777777777765310           


Q ss_pred             CccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEe
Q 045210          494 PFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLD  573 (873)
Q Consensus       494 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  573 (873)
                                     .....+|..|.+|+.+.+..+ + ..++...|..+++|+.+++.++....  ..+..+..|+.+.
T Consensus       324 ---------------~I~~~aF~~C~~L~~i~ip~s-v-~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~  384 (394)
T 4gt6_A          324 ---------------QILDDAFAGCEQLERIAIPSS-V-TKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLP  384 (394)
T ss_dssp             ---------------EECTTTTTTCTTCCEEEECTT-C-CBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----
T ss_pred             ---------------EehHhHhhCCCCCCEEEECcc-c-CEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEE
Confidence                           112345666777777777544 3 25677777777888888877765431  2444555566555


Q ss_pred             CCCC
Q 045210          574 LSSN  577 (873)
Q Consensus       574 l~~n  577 (873)
                      +..+
T Consensus       385 i~~~  388 (394)
T 4gt6_A          385 VAPG  388 (394)
T ss_dssp             ----
T ss_pred             eCCC
Confidence            5443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.99  E-value=1.4e-08  Score=111.02  Aligned_cols=299  Identities=11%  Similarity=0.133  Sum_probs=143.3

Q ss_pred             CCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCC-Cch-hHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEE
Q 045210          225 LETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-SSI-VNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD  302 (873)
Q Consensus       225 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  302 (873)
                      |+.+.+.. .++.+...+|.+|++|+.+.+..+.-.. ..+ ...+.++.+|+.+.+..+ ++..-..++..+.+|+.+.
T Consensus        66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            44444432 2444445555555555555554432100 111 123444555555444332 2223334455666666666


Q ss_pred             CCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 045210          303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ  382 (873)
Q Consensus       303 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  382 (873)
                      +..+ +.......+..+..|+.+.+..+ ++..-..+|. ...|+.+.+..+-. .....++..+..++...........
T Consensus       144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~  219 (394)
T 4gt6_A          144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA  219 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB
T ss_pred             ccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceeccccccccc
Confidence            6432 22223344555666666666543 2222223333 24566666544321 1223455555666555554433221


Q ss_pred             hhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccC
Q 045210          383 EISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLS  462 (873)
Q Consensus       383 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  462 (873)
                      .                .......+.........+.....+..+.+... ++......|..+..|+.+.+.++..  .+.
T Consensus       220 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~--~I~  280 (394)
T 4gt6_A          220 I----------------DNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV--SIG  280 (394)
T ss_dssp             S----------------SSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC--EEC
T ss_pred             c----------------cceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc--eec
Confidence            0                00000011111100111222334444444322 2223345677777888887765543  456


Q ss_pred             hhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhc
Q 045210          463 ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKS  542 (873)
Q Consensus       463 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~  542 (873)
                      ...|.+++.|+.+.+...-                          .......|..|.+|+.+++..+ + ..+....|..
T Consensus       281 ~~aF~~c~~L~~i~l~~~i--------------------------~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~  332 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFSSRI--------------------------TELPESVFAGCISLKSIDIPEG-I-TQILDDAFAG  332 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC--------------------------CEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTT
T ss_pred             CcccccccccccccCCCcc--------------------------cccCceeecCCCCcCEEEeCCc-c-cEehHhHhhC
Confidence            6667777777777665321                          1112345667777888877654 2 3566677777


Q ss_pred             CCCCcEEeccCcccccccC-CccccCCCCeEeCCCC
Q 045210          543 LSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSN  577 (873)
Q Consensus       543 l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n  577 (873)
                      +.+|+.+.+..+ ++..-. +|..+.+|+.+++.++
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            778888877644 332222 5666666666665554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=1.8e-09  Score=116.03  Aligned_cols=104  Identities=17%  Similarity=0.118  Sum_probs=79.9

Q ss_pred             ceEeccCC-cccCCCChhhhccccCcEEEcCC-CcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEcc
Q 045210          619 QVLNLGNN-TLSGEIPDCWMNWSFLFFLHLGE-NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS  696 (873)
Q Consensus       619 ~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  696 (873)
                      ..++.+++ +++ .+|. +..+++|+.|+|++ |++.+..|..|.++++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35677777 776 4677 88888888888885 88887777778888888888888888888888888888888888888


Q ss_pred             CCeecccCChhHHhhcccCcEEEccCCeee
Q 045210          697 ENEFVGNIPTWIGERLSGIILLSLRANQFH  726 (873)
Q Consensus       697 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~  726 (873)
                      +|+++ .+|...+..++ |+.|++.+|++.
T Consensus        89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            88887 56655554333 777777777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=1.9e-09  Score=115.01  Aligned_cols=161  Identities=17%  Similarity=0.221  Sum_probs=94.1

Q ss_pred             ccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHh-hcccCcEEEccC--Ceeeee-----C
Q 045210          658 TSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGE-RLSGIILLSLRA--NQFHGF-----F  729 (873)
Q Consensus       658 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~l~~L~~L~L~~--n~l~~~-----~  729 (873)
                      ..+..+++|+.|+|++|.-. .++. +. +++|+.|++..|.+.......+.. .+++|+.|+|+.  |...+.     +
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            33445566666666665211 1222 22 566777777666654333233321 366777776642  111111     1


Q ss_pred             Cccc--CCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCccc
Q 045210          730 PPEL--CGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS  807 (873)
Q Consensus       730 p~~l--~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~  807 (873)
                      ...+  ..+++|+.|+|++|.+++..+..+.....                              .+.|+.||||.|.++
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~------------------------------~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI------------------------------LPQLETMDISAGVLT  292 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS------------------------------GGGCSEEECCSSCCB
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc------------------------------CCCCCEEECCCCCCC
Confidence            1112  34789999999998887554443332111                              345689999999988


Q ss_pred             cc----CChhhhcCCCCCeeeCCCCcCcccCCccccC-CCCCCeEeccCCc
Q 045210          808 GE----IPSQVTNLVGLQTLKLSHNFFSGRIPVNMGA-MKSVEALDFSSNR  853 (873)
Q Consensus       808 ~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~L~~L~ls~N~  853 (873)
                      +.    ++..+.++++|+.|+|++|.++...-..+.. +  ...+|+++++
T Consensus       293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            63    4555567899999999999888654333332 2  3568888887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=1.6e-08  Score=107.83  Aligned_cols=61  Identities=16%  Similarity=0.174  Sum_probs=26.8

Q ss_pred             hhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCccccc--CCCCCCEEeCC
Q 045210          289 PDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG--NLTSIKSLDLS  352 (873)
Q Consensus       289 ~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~  352 (873)
                      ...+..+++|+.|++++|.-. .++. + .+++|++|++..+.+.......+.  .+++|++|+|+
T Consensus       165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            334444555555555444211 1121 2 245555555555554432222232  45555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.58  E-value=2.8e-06  Score=92.16  Aligned_cols=208  Identities=11%  Similarity=0.081  Sum_probs=89.1

Q ss_pred             cccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCcccccc
Q 045210          141 FLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITN  220 (873)
Q Consensus       141 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~  220 (873)
                      +|.+|.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ +..+....|   .. .+|+.+.+..+ +..+...  .+.
T Consensus        64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF---~~-~~L~~i~lp~~-~~~i~~~--~F~  133 (379)
T 4h09_A           64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVF---QG-TDLDDFEFPGA-TTEIGNY--IFY  133 (379)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTT---TT-CCCSEEECCTT-CCEECTT--TTT
T ss_pred             HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecccee---cc-CCcccccCCCc-ccccccc--ccc
Confidence            4555666666666433 333333455554 4555555432 444444333   12 24556655443 1111111  112


Q ss_pred             CCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCE
Q 045210          221 SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH  300 (873)
Q Consensus       221 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  300 (873)
                      . .+++.+.+.. .++.+...+|.++..++.+.+..+.....  ......          .+ ........+..+..+..
T Consensus       134 ~-~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~--~~~~~~----------~~-~~~~~~~~~~~~~~~~~  198 (379)
T 4h09_A          134 N-SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYV--AENYVL----------YN-KNKTILESYPAAKTGTE  198 (379)
T ss_dssp             T-CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEE--EETTEE----------EE-TTSSEEEECCTTCCCSE
T ss_pred             c-ceeeeeeccc-eeeccccchhcccccccccccccccceee--ccccee----------cc-cccceeccccccccccc
Confidence            2 2444444432 24444556667777777776665432200  000000          00 00011222333344444


Q ss_pred             EECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEcc
Q 045210          301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLS  376 (873)
Q Consensus       301 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  376 (873)
                      +.+...... .....+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....++.++.+|+.+.+.
T Consensus       199 ~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~  271 (379)
T 4h09_A          199 FTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY  271 (379)
T ss_dssp             EECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence            444332211 22333445555665555433 22233344555666666666543 333333455555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.56  E-value=3.1e-06  Score=91.78  Aligned_cols=108  Identities=14%  Similarity=0.156  Sum_probs=50.7

Q ss_pred             hhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhccc
Q 045210          635 CWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSG  714 (873)
Q Consensus       635 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~  714 (873)
                      .+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +. .++...+.++++
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence            4444455555555433 22122334445555555555443 33344445555555555555432 22 344444444555


Q ss_pred             CcEEEccCCeeeeeCCcccCCCCCCCEEeCCC
Q 045210          715 IILLSLRANQFHGFFPPELCGLASLKILDLSS  746 (873)
Q Consensus       715 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  746 (873)
                      |+.+.+.++.++..-...|.++++|+.++|..
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            55555555444434344455555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=9.9e-08  Score=91.60  Aligned_cols=113  Identities=14%  Similarity=0.140  Sum_probs=53.4

Q ss_pred             CCcEEEccCc-cCcCcchhhhhhhcccCCCCceEeccCCcccCC----CChhhhccccCcEEEcCCCcCccC----Cccc
Q 045210          589 SLTTLDLSSN-FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE----IPDCWMNWSFLFFLHLGENDFTGN----LPTS  659 (873)
Q Consensus       589 ~L~~L~l~~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~p~~  659 (873)
                      +|++|++++| .+.......++..+...++|++|+|++|.+...    +...+...++|++|+|++|.+...    +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            3444444444 444433344444455555566666666655431    222333445555555555555432    2333


Q ss_pred             ccCCCCccEEEc--cCCccccc----CCcccccCCCCcEEEccCCeec
Q 045210          660 LGTLSSLQILHL--RGNRFSGK----IPVSLQNCTELRLFDISENEFV  701 (873)
Q Consensus       660 l~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~  701 (873)
                      +...++|++|+|  ++|.+...    +...+...+.|++|++++|.+.
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            444455555555  45555432    1223333455555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=1.6e-07  Score=94.55  Aligned_cols=78  Identities=23%  Similarity=0.197  Sum_probs=66.2

Q ss_pred             CccceEEECCCCcccc--cCChhhhcCCCCCeeeCCCCcCcccCCccccCCC--CCCeEeccCCcccccccc-------c
Q 045210          793 PYYLKVLDLSANYFSG--EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMK--SVEALDFSSNRLQGEIPK-------N  861 (873)
Q Consensus       793 ~~~L~~L~ls~n~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~iP~-------~  861 (873)
                      ++.|+.|+||+|++++  .+|..+..+++|+.|+|++|.+++.  ..+..++  +|++|++++|++.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3456999999999998  6778889999999999999999975  4455555  999999999999998873       3


Q ss_pred             cccCCCCCccc
Q 045210          862 MVNLEFLEIFN  872 (873)
Q Consensus       862 l~~l~~L~~l~  872 (873)
                      +..++.|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            67888888886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=4.5e-07  Score=86.96  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=63.8

Q ss_pred             hhcCCCCCcEEEccCC-cCCC----CChhhhcCCCCCCEEECCCCCCCCC----CchhhhcCCCcCEEEccCCcCCcc--
Q 045210          267 QVLGLVNLVFLDLSTN-NFQG----AVPDAIQNSTSLQHLDLSRNHFSSS----VPDWFNKFIDLEYLSLSYNELQGS--  335 (873)
Q Consensus       267 ~~~~l~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~--  335 (873)
                      .+...++|++|+|++| .+..    .+...+...++|++|++++|.+...    +...+...++|++|+|++|.+...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3344445555555554 4432    1233444555666666666655432    223344456666666666666532  


Q ss_pred             --CcccccCCCCCCEEeC--CCCcCCCc----chhhhhcCCCCCEEEccCCcCcc
Q 045210          336 --IPGSLGNLTSIKSLDL--SFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQ  382 (873)
Q Consensus       336 --~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~  382 (873)
                        +...+...++|++|++  ++|.+...    +...+...++|++|++++|.+..
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence              3444556667777777  66766543    33445556777777777776643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=4.2e-07  Score=91.52  Aligned_cols=67  Identities=21%  Similarity=0.318  Sum_probs=40.7

Q ss_pred             hccccCcEEEcCCCcCcc--CCcccccCCCCccEEEccCCcccccCCcccccCC--CCcEEEccCCeecccCC
Q 045210          637 MNWSFLFFLHLGENDFTG--NLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT--ELRLFDISENEFVGNIP  705 (873)
Q Consensus       637 ~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~ip  705 (873)
                      .++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++.+.  ..+..+.  +|++|++++|++.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            445666666666666665  3344555666777777777766643  2233333  67777777777766665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=2.4e-05  Score=72.66  Aligned_cols=83  Identities=18%  Similarity=0.175  Sum_probs=39.5

Q ss_pred             CCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCc-CCccCcccccCC----CCCCEEeCCCCc-CCCcchhhhhcCCCC
Q 045210          297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE-LQGSIPGSLGNL----TSIKSLDLSFNR-LESKIPRAFKRLRHL  370 (873)
Q Consensus       297 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L  370 (873)
                      +|++||+++|.++...-..+..+++|++|+|++|. +++..-..++.+    ++|++|++++|. ++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34444444444443333334445555555555553 433322333332    245566665553 544434445556666


Q ss_pred             CEEEccCCc
Q 045210          371 RSVNLSGNK  379 (873)
Q Consensus       371 ~~L~L~~n~  379 (873)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.65  E-value=1.9e-05  Score=73.43  Aligned_cols=82  Identities=9%  Similarity=0.109  Sum_probs=38.4

Q ss_pred             CCCEEEccCCCCCCCCccccCCCCCccEEEcCCCC-CCCCchhHhhcCC----CCCcEEEccCCc-CCCCChhhhcCCCC
Q 045210          224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ-FADSSIVNQVLGL----VNLVFLDLSTNN-FQGAVPDAIQNSTS  297 (873)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~  297 (873)
                      +|++|++++|.++...-..+.++++|++|+|++|. ++ ..-...+..+    ++|++|++++|. +++.--..+.++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            34555555555444444445555555555555553 43 2222333332    245555555543 44333333444555


Q ss_pred             CCEEECCCC
Q 045210          298 LQHLDLSRN  306 (873)
Q Consensus       298 L~~L~l~~n  306 (873)
                      |++|++++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=0.00015  Score=68.81  Aligned_cols=112  Identities=18%  Similarity=0.169  Sum_probs=58.4

Q ss_pred             CCcEEEccCc-cCcCcchhhhhhhcccCCCCceEeccCCcccCC----CChhhhccccCcEEEcCCCcCccC----Cccc
Q 045210          589 SLTTLDLSSN-FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE----IPDCWMNWSFLFFLHLGENDFTGN----LPTS  659 (873)
Q Consensus       589 ~L~~L~l~~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~p~~  659 (873)
                      .|+.|++++| .+.......++..+...+.|+.|+|++|++...    +-+.+..-+.|++|+|++|.+...    +-+.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4555555553 554444455566666666677777777766532    223344456666666666666532    2233


Q ss_pred             ccCCCCccEEEccCCc---ccc----cCCcccccCCCCcEEEccCCee
Q 045210          660 LGTLSSLQILHLRGNR---FSG----KIPVSLQNCTELRLFDISENEF  700 (873)
Q Consensus       660 l~~l~~L~~L~L~~n~---l~~----~~p~~l~~l~~L~~L~Ls~n~l  700 (873)
                      +..-+.|++|+|++|.   +..    .+...+..-+.|+.|+++.|..
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            4444556666665442   221    1223334445555666555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.04  E-value=0.0012  Score=62.41  Aligned_cols=111  Identities=16%  Similarity=0.134  Sum_probs=58.5

Q ss_pred             CCCCCcEEEccCC-cCCC----CChhhhcCCCCCCEEECCCCCCCC----CCchhhhcCCCcCEEEccCCcCCcc----C
Q 045210          270 GLVNLVFLDLSTN-NFQG----AVPDAIQNSTSLQHLDLSRNHFSS----SVPDWFNKFIDLEYLSLSYNELQGS----I  336 (873)
Q Consensus       270 ~l~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~  336 (873)
                      .-+.|++|+|++| .+..    .+.+++..-+.|++|+|++|.+..    .+.+.+..-+.|++|+|++|.+...    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3445555555543 4432    234445555566666666666542    2233344556666666666666532    2


Q ss_pred             cccccCCCCCCEEeCCCC---cCCC----cchhhhhcCCCCCEEEccCCcC
Q 045210          337 PGSLGNLTSIKSLDLSFN---RLES----KIPRAFKRLRHLRSVNLSGNKL  380 (873)
Q Consensus       337 ~~~l~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~L~~n~l  380 (873)
                      .+.+..-+.|++|+|+++   .+..    .+...+..-+.|+.|+++.+.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            233444556777777654   2222    1334555666777777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.24  E-value=0.0052  Score=54.25  Aligned_cols=56  Identities=16%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             EEECCCCccc-ccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210          798 VLDLSANYFS-GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       798 ~L~ls~n~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  855 (873)
                      .+|-+++.++ ..+|..+.  ++|++|+|++|+|+..-+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 24554322  24556666666666444444555666666666666553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.76  E-value=0.0086  Score=52.83  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=39.8

Q ss_pred             EEEccCCeec-ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCcccc
Q 045210          692 LFDISENEFV-GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTG  751 (873)
Q Consensus       692 ~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  751 (873)
                      .++.+++.++ ..+|..+   .++++.|+|++|+++...+..|..+++|+.|+|++|++..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            5666777664 3566543   3467777777777776666667778888888888888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	873
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-24
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-12
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	9e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  102 bits (254), Expect = 2e-24
 Identities = 69/350 (19%), Positives = 114/350 (32%), Gaps = 53/350 (15%)

Query: 35  CIESEREALLSFKQDLEDPSNRLASWNNIGVGDCC--KWYGVVCDNITGHVLELRLRNPS 92
           C   +++ALL  K+DL +P+  L+SW      DCC   W GV+CD  T            
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTT--DCCNRTWLGVLCDTDTQTY--------- 50

Query: 93  RDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQG-IQIPRFLGSLENLMYL 151
                                         + +LDLS  +      IP  L +L  L +L
Sbjct: 51  -----------------------------RVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 152 NISR-AGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLS 210
            I      VG IP  I  L+ L +L +    + G   +    +  L  L     +     
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA----L 137

Query: 211 KTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLG 270
             +  P I++  + +        +   I     +      ++ IS N+            
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-- 195

Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYN 330
               +     + N        +  S           +  +          +L  L L  N
Sbjct: 196 -NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254

Query: 331 ELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
            + G++P  L  L  + SL++SFN L  +IP     L+       + NK 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.6 bits (192), Expect = 3e-16
 Identities = 62/290 (21%), Positives = 105/290 (36%), Gaps = 19/290 (6%)

Query: 587 PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG--EIPDCWMNWSFLFF 644
           P++L++   +++  + T    LC+    + R+  L+L    L     IP    N  +L F
Sbjct: 21  PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80

Query: 645 LHLGEND-FTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN 703
           L++G  +   G +P ++  L+ L  L++     SG IP  L     L   D S N   G 
Sbjct: 81  LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140

Query: 704 IPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN--------------L 749
           +P  I      ++ ++   N+  G  P      + L      S N              L
Sbjct: 141 LPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

Query: 750 TGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE 809
             V           +          +  L           +G    L  LDL  N   G 
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259

Query: 810 IPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP 859
           +P  +T L  L +L +S N   G IP   G ++  +   +++N+     P
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 6e-15
 Identities = 64/291 (21%), Positives = 107/291 (36%), Gaps = 8/291 (2%)

Query: 400 ESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG--HIPLSLGQLSSLRYLDVSTNNL 457
            + D  N T  G+L +       +++LDLS  N+     IP SL  L  L +L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 458 NGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLS 517
                    A LT+L     +  + V   +    +    L  +  S   +    P  + S
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSN 577
             +L+ +    + IS  IPD           + +S N++ G+IP       L  +DLS N
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207

Query: 578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM 637
            L G   ++  S           +          ++ ++     +L NN + G +P    
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL--DLRNNRIYGTLPQGLT 265

Query: 638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT 688
              FL  L++  N+  G +P   G L    +     N+     P  L  CT
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 61/259 (23%), Positives = 94/259 (36%), Gaps = 21/259 (8%)

Query: 219 TNSLHSLETLRFSGCLLHHISPL--SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVF 276
               + +  L  SG  L    P+  S AN   L  L I         I   +  L  L +
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           L ++  N  GA+PD +    +L  LD S N  S ++P   +   +L  ++   N + G+I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 337 PGSLGNLTSIKSLDLSFN------------------RLESKIPRAFKRLRHLRSVNLSGN 378
           P S G+ + + +                           S+            S   +  
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 379 KLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438
               + S   D+     S  L  LDL NN ++G L   +   K L SL++SFNN+ G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 439 LSLGQLSSLRYLDVSTNNL 457
              G L        + N  
Sbjct: 286 -QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.6 bits (171), Expect = 1e-13
 Identities = 65/276 (23%), Positives = 100/276 (36%), Gaps = 14/276 (5%)

Query: 314 DWFNKFIDLEYLSLSYNELQG--SIPGSLGNLTSIKSLDLSFN-RLESKIPRAFKRLRHL 370
           D   +   +  L LS   L     IP SL NL  +  L +     L   IP A  +L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 371 RSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSF 430
             + ++   +S                 L +LD S N L G L   I +  NL  +    
Sbjct: 104 HYLYITHTNVSGA-----IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 431 NNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPS 490
           N ISG IP S G  S L      + N    L+         L       +  +L+  +  
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRN---RLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 491 WTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLN 550
                +       +          +    +L  LDL N+ I  T+P  L   L  ++ LN
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLN 274

Query: 551 LSYNQIFGQIPDLNDAAQLETLDLSSNSL--SGPLP 584
           +S+N + G+IP   +  + +    ++N      PLP
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 91.6 bits (226), Expect = 3e-20
 Identities = 72/368 (19%), Positives = 126/368 (34%), Gaps = 34/368 (9%)

Query: 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRP 179
           L  +  L       + I     +  L NL  +N S      I P  + NL+ L  + +  
Sbjct: 43  LDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 180 NYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLIT----NSLHSLETLRFSGCLL 235
           N +  +             L +  ++ +D  K            N++  +  L     L 
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 236 HHISP---LSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI 292
                         ++L TL+  D      S ++ +  L NL  L  + N      P  I
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 293 QNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS 352
              T+L  L L+ N              +L  L L+ N++    P  L  LT +  L L 
Sbjct: 218 L--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 271

Query: 353 FNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGL 412
            N++ +  P     L  L ++ L+ N       Q+ D+        L  L L  N +  +
Sbjct: 272 ANQISNISP--LAGLTALTNLELNEN-------QLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 413 LTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKL 472
               + +   L  L  + N +S     SL  L+++ +L    N ++        ANLT++
Sbjct: 323 S--PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP---LANLTRI 375

Query: 473 VGFDASGN 480
                +  
Sbjct: 376 TQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.2 bits (212), Expect = 2e-18
 Identities = 72/384 (18%), Positives = 125/384 (32%), Gaps = 73/384 (19%)

Query: 367 LRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSL 426
           L       L    ++  +SQ          + + +L      +  +  + +    NL  +
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQ-------TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQI 71

Query: 427 DLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKL-------------- 472
           + S N ++   PL    L+ L  + ++ N +       +  NLT L              
Sbjct: 72  NFSNNQLTDITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 473 -----VGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG----------------PQF 511
                   + S N++         T   QL      +                       
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 512 PQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLET 571
              L    +L  L  +N+ ISD  P  ++ +L     L+L+ NQ+   I  L     L  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLKD-IGTLASLTNLTD 245

Query: 572 LDLSSNSLSGPLPLI-PSSLTTLDLSSNFLSGTLSRFLCNEMNNS--------------- 615
           LDL++N +S   PL   + LT L L +N +S          + N                
Sbjct: 246 LDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 305

Query: 616 -MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN 674
              L  L L  N +S   P    + + L  L    N  +    +SL  L+++  L    N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 675 RFSGKIPVSLQNCTELRLFDISEN 698
           + S   P  L N T +    +++ 
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.1 bits (209), Expect = 4e-18
 Identities = 61/372 (16%), Positives = 114/372 (30%), Gaps = 33/372 (8%)

Query: 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLS 580
            +   L  ++++DT+       L Q+  L      I   I  +     L  ++ S+N L+
Sbjct: 24  KMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNNQLT 79

Query: 581 GPLPLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW 639
              PL   + L  + +++N ++          +             + L        +  
Sbjct: 80  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 640 SFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK---------IPVSLQNCTEL 690
           S      +       +L           +  L       +             L   T L
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
                + N+     P  I   L     LSL  NQ        L  L +L  LDL++N ++
Sbjct: 200 ESLIATNNQISDITPLGILTNLD---ELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 751 GVIPRC---------INNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDL 801
            + P           +          L       +  +   +     PI     L  L L
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 802 SANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP-K 860
             N  S   P  V++L  LQ L  ++N  S     ++  + ++  L    N++    P  
Sbjct: 315 YFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 370

Query: 861 NMVNLEFLEIFN 872
           N+  +  L + +
Sbjct: 371 NLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.5 bits (192), Expect = 5e-16
 Identities = 71/366 (19%), Positives = 118/366 (32%), Gaps = 37/366 (10%)

Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTL 461
             L    +   ++    +   + +L      I   I   +  L++L  ++ S N L    
Sbjct: 27  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDIT 82

Query: 462 SENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHL 521
                 NLTKLV    + N +       + T    L         I P      L++  L
Sbjct: 83  P---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 522 IYLDLSNSSISDTIPDRLVK------------SLSQINYLNLSYNQIFGQIPDLNDAAQL 569
               +S+ S    +                  +           +     I  L     L
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 570 ETLDLSSNSLSGPLPL-IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL 628
           E+L  ++N +S   PL I ++L  L L+ N L           + +   L  L+L NN +
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQI 253

Query: 629 SGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT 688
           S   P      + L  L LG N  +   P  L  L++L  L L  N+     P+   N  
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLK 307

Query: 689 ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748
            L    +  N      P      L+ +  L    N+        L  L ++  L    N 
Sbjct: 308 NLTYLTLYFNNISDISPV---SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 749 LTGVIP 754
           ++ + P
Sbjct: 363 ISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 2e-15
 Identities = 73/434 (16%), Positives = 124/434 (28%), Gaps = 70/434 (16%)

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
                    L   N++  +  +   L  +  L      +    S +    L  L   + S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 74

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDR 538
            N L       +   P +     L    +       +    +L  L       +      
Sbjct: 75  NNQL-------TDITPLK-NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN 598
            +K+L+ +N L LS N I          +  +    +  +           L  L     
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-------DLKPLANLTTLER 179

Query: 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
               +      + +     L+ L   NN +S   P      + L  L L  N        
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IG 235

Query: 659 SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILL 718
           +L +L++L  L L  N+ S   P  L   T+L    +  N+     P      L+ +  L
Sbjct: 236 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA---GLTALTNL 290

Query: 719 SLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDAL 778
            L  NQ     P     L +L  L L  NN++ + P                        
Sbjct: 291 ELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP------------------------ 324

Query: 779 IVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNM 838
                      +     L+ L  + N  S    S + NL  +  L   HN  S   P  +
Sbjct: 325 -----------VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 369

Query: 839 GAMKSVEALDFSSN 852
             +  +  L  +  
Sbjct: 370 ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 3e-14
 Identities = 64/393 (16%), Positives = 129/393 (32%), Gaps = 38/393 (9%)

Query: 244 ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL 303
              +  +   +      D+        L  +  L       +    D ++   +L  ++ 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSI--DGVEYLNNLTQINF 73

Query: 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA 363
           S N  +   P        L  + ++ N++    P +     +  +L  +       +   
Sbjct: 74  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQI------ 417
               R   S N + + +S           +  + V +   L+N T    L          
Sbjct: 132 TNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 418 ---GNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVG 474
                  NL+SL  + N IS   PL +   ++L  L ++ N L         A+LT L  
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI---GTLASLTNLTD 245

Query: 475 FDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDT 534
            D + N +         +   +L  + L +  I    P   L+    +       + +  
Sbjct: 246 LDLANNQIS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE-----LNENQL 297

Query: 535 IPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP-SSLTTL 593
                + +L  + YL L +N I    P ++   +L+ L  ++N +S    L   +++  L
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSSLANLTNINWL 356

Query: 594 DLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
               N +S          + N  R+  L L + 
Sbjct: 357 SAGHNQISDLT------PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 8e-05
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
             +  L  L  L  + N          L +L N+ +L+        + P  + NL+ +  
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 175 LDLRPN 180
           L L   
Sbjct: 378 LGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.7 bits (221), Expect = 4e-20
 Identities = 51/267 (19%), Positives = 85/267 (31%), Gaps = 18/267 (6%)

Query: 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPN 180
                LDL  N    I       +L+NL  L +       I P     L  L+ L L  N
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 181 YLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP 240
            L  L  +    +      + L +   +++K         +   +  L  +      I  
Sbjct: 90  QLKELPEKMPKTL------QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 241 LSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH 300
            +F     L  + I+D                +L  L L  N        +++   +L  
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
           L LS N  S+           L  L L+ N+L   +PG L +   I+ + L  N + +  
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 361 PRAFK------RLRHLRSVNLSGNKLS 381
              F       +      V+L  N + 
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.8 bits (216), Expect = 2e-19
 Identities = 52/275 (18%), Positives = 94/275 (34%), Gaps = 19/275 (6%)

Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
            VP  +        LDL  N  +      F    +L  L L  N++    PG+   L  +
Sbjct: 24  KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
           + L LS N+L+    +  K L+ LR       K+ + +      F+     ++  L  + 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV------FNGLNQMIVVELGTNP 135

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHF 466
               G+        K L  + ++  NI+    +  G   SL  L +  N +         
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKV-DAASL 191

Query: 467 ANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDL 526
             L  L     S NS+           P   +    ++     + P  L    ++  + L
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYL 249

Query: 527 SNSSIS-----DTIPDRLVKSLSQINYLNLSYNQI 556
            N++IS     D  P       +  + ++L  N +
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.7 bits (208), Expect = 2e-18
 Identities = 63/308 (20%), Positives = 107/308 (34%), Gaps = 28/308 (9%)

Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
            L+ +  S       VP       D   L L  N++     G   NL ++ +L L  N++
Sbjct: 11  HLRVVQCSDLGLEK-VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 357 ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQ 416
               P AF  L  L  + LS N+L +                L+ L +  N +  +  + 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKE--------LPEKMPKTLQELRVHENEITKVRKSV 119

Query: 417 IGNFKNLDSLDLSF--NNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVG 474
                 +  ++L       SG    +   +  L Y+ ++  N+  T+ +    +LT+L  
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTEL-- 176

Query: 475 FDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDT 534
               GN +  KV + S      L  +GLS   I       L +  HL  L L+N+ +   
Sbjct: 177 -HLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234

Query: 535 IPDRLVKSLSQINYLNLSYNQI-------FGQIPDLNDAAQLETLDLSSNSLSGPLPLIP 587
                      I  + L  N I       F         A    + L SN +     + P
Sbjct: 235 PGGL--ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY-WEIQP 291

Query: 588 SSLTTLDL 595
           S+   + +
Sbjct: 292 STFRCVYV 299

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 12/236 (5%)

Query: 247 SSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRN 306
                LD+ +N+            L NL  L L  N      P A      L+ L LS+N
Sbjct: 31  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 307 HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKR 366
                         +L        +++ S+   L  +  +  L  +  +       AF+ 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG 148

Query: 367 LRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSL 426
           ++ L  + ++   ++                 L  L L  N +  +    +    NL  L
Sbjct: 149 MKKLSYIRIADTNITT--------IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 427 DLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
            LSFN+IS     SL     LR L ++ N L         A+   +       N++
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 8e-13
 Identities = 52/284 (18%), Positives = 84/284 (29%), Gaps = 38/284 (13%)

Query: 421 KNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
            +   LDL  N I+         L +L  L +  N ++  +S   FA L KL     S N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKN 89

Query: 481 SLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV 540
            L  K +        Q   +  +      +     L+Q  ++ L  +    S        
Sbjct: 90  QL--KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 541 KSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFL 600
                                       L  + ++  +++     +P SLT L L  N +
Sbjct: 148 GMKK------------------------LSYIRIADTNITTIPQGLPPSLTELHLDGNKI 183

Query: 601 SGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSL 660
           +   +  L         L  L L  N++S        N   L  LHL  N      P  L
Sbjct: 184 TKVDAASLK----GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGL 238

Query: 661 GTLSSLQILHLRGNRFSG------KIPVSLQNCTELRLFDISEN 698
                +Q+++L  N  S         P             +  N
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 8e-12
 Identities = 50/294 (17%), Positives = 85/294 (28%), Gaps = 25/294 (8%)

Query: 568 QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT 627
            L  +  S   L      +P     LDL +N ++        N  N    L  L L NN 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKN----LHTLILINNK 66

Query: 628 LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNC 687
           +S   P  +     L  L+L +N           TL  L++      +    +   L   
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 688 TELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN 747
             + L              + G  +  +  + +                 SL  L L  N
Sbjct: 127 IVVELGTNPLKSSGIENGAFQG--MKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGN 181

Query: 748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS 807
            +T V    +  L  +                     V    +    +L+ L L+ N   
Sbjct: 182 KITKVDAASLKGLNNL---------AKLGLSFNSISAVDNGSLANTPHLRELHLN-NNKL 231

Query: 808 GEIPSQVTNLVGLQTLKLSHNFFSG------RIPVNMGAMKSVEALDFSSNRLQ 855
            ++P  + +   +Q + L +N  S         P       S   +   SN +Q
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 9e-12
 Identities = 42/256 (16%), Positives = 89/256 (34%), Gaps = 39/256 (15%)

Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
             +L+L NN ++      + N   L  L L  N  +   P +   L  L+ L+L  N+  
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
                  +   ELR+ +    +   ++   + + +  ++ L     +  G       G+ 
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI--VVELGTNPLKSSGIENGAFQGMK 150

Query: 738 SLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLK 797
            L  + ++  N+T +                                    P G P  L 
Sbjct: 151 KLSYIRIADTNITTI------------------------------------PQGLPPSLT 174

Query: 798 VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGE 857
            L L  N  +    + +  L  L  L LS N  S     ++     +  L  ++N+L  +
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 233

Query: 858 IPKNMVNLEFLEIFNI 873
           +P  + + +++++  +
Sbjct: 234 VPGGLADHKYIQVVYL 249

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 108 KIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIG 167
           KI      SL GL +L  L LS+N    +     L +  +L  L+++    V  +P  + 
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV-KVPGGLA 239

Query: 168 NLSNLQFLDLRPNYLGGLYVEDF---GWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHS 224
           +   +Q + L  N +  +   DF   G+ +  +    + L    +      P     ++ 
Sbjct: 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

Query: 225 LETLR 229
              ++
Sbjct: 300 RAAVQ 304

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 9e-15
 Identities = 52/259 (20%), Positives = 86/259 (33%), Gaps = 9/259 (3%)

Query: 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPN 180
                + L  N    +       +  NL  L +       I       L+ L+ LDL  N
Sbjct: 32  AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 181 YLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP 240
               L   D      L  L  L L    L +   G        +L+ L      L  +  
Sbjct: 91  AQ--LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPD 146

Query: 241 LSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH 300
            +F +  +L  L +  N+   S       GL +L  L L  N      P A ++   L  
Sbjct: 147 DTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
           L L  N+ S+   +       L+YL L+ N        +      ++    S + +   +
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSL 264

Query: 361 PRAF--KRLRHLRSVNLSG 377
           P+    + L+ L + +L G
Sbjct: 265 PQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 51/287 (17%), Positives = 91/287 (31%), Gaps = 19/287 (6%)

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
           T       L      IP++   + L  N +S   +       N    L +L L +N L+ 
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRN----LTILWLHSNVLAR 70

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNL-PTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTE 689
                +   + L  L L +N    ++ P +   L  L  LHL         P   +    
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
           L+   + +N           +  + +  L L  N+          GL SL  L L  N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 750 TGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE 809
             V P    +L  +                     +    +     L+ L L+ N +  +
Sbjct: 190 AHVHPHAFRDLGRL---------MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 810 IPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG 856
             ++      LQ  + S +     +P     +   +    ++N LQG
Sbjct: 241 CRAR-PLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 3e-14
 Identities = 54/274 (19%), Positives = 90/274 (32%), Gaps = 16/274 (5%)

Query: 162 IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS 221
           +P  I   +  Q + L  N +  +    F    +L++L         +   +   L    
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
                        L  + P +F     L TL +               GL  L +L L  
Sbjct: 84  QLD----LSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQD 138

Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
           N  Q    D  ++  +L HL L  N  SS     F     L+ L L  N +    P +  
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
           +L  + +L L  N L +    A   LR L+ + L+ N    +        +      L+ 
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR------ARPLWAWLQK 252

Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG 435
              S++ +   L          D   L+ N++ G
Sbjct: 253 FRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 3e-12
 Identities = 53/303 (17%), Positives = 92/303 (30%), Gaps = 34/303 (11%)

Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK 359
                +    + VP         + + L  N +      S     ++  L L  N L   
Sbjct: 15  TTSCPQQGLQA-VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 360 IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGN 419
              AF  L  L  ++LS N   + +      F       L +L L    L  L       
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDP--ATFHGL--GRLHTLHLDRCGLQELGPGLFRG 127

Query: 420 FKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASG 479
              L  L L  N +      +   L +L +L +  N ++  + E  F  L  L       
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQ 186

Query: 480 NSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRL 539
           N  V  V   ++    +L  + L +  +     + L     L YL L+++        R 
Sbjct: 187 NR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RA 243

Query: 540 VKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF 599
               + +     S +++   +P                 L+G             L++N 
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQ---------------RLAG--------RDLKRLAAND 280

Query: 600 LSG 602
           L G
Sbjct: 281 LQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 2e-10
 Identities = 45/260 (17%), Positives = 85/260 (32%), Gaps = 14/260 (5%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
            + + L  N +  +        +NL  L L  N ++     +   L+ L  LD+S N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518
            ++    F  L +L          + ++    +     LQ + L    +           
Sbjct: 94  RSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPD----LNDAAQLETLDL 574
            +L +L L  + I  ++P+R  + L  ++ L L  N++    P     L     L     
Sbjct: 153 GNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 575 SSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPD 634
           + ++L         +L  L L+ N          C        LQ     ++ +   +P 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCD-----CRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 635 CWMNWSFLFFLHLGENDFTG 654
                +      L  ND  G
Sbjct: 267 ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 40/218 (18%), Positives = 60/218 (27%), Gaps = 11/218 (5%)

Query: 656 LPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI 715
           +P  +    + Q + L GNR S     S + C  L +  +  N                 
Sbjct: 26  VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 716 ILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE 775
            L      Q     P    GL  L  L L    L  + P     LA +    L+ +    
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP 835
                    +          L  L L  N  S         L  L  L L  N  +   P
Sbjct: 144 ---------LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 836 VNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
                +  +  L   +N L     + +  L  L+   +
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 42/180 (23%), Positives = 64/180 (35%), Gaps = 8/180 (4%)

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
           T+D +   L      IP   T L L+ N L    S            L  L L  N L+G
Sbjct: 12  TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQLTG 68

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690
             P+ +   S +  L LGEN            L  L+ L+L  N+ S  +P S ++   L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT 750
              +++ N F  N           +   SL         P +   +  ++I DL  +   
Sbjct: 129 TSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 13/183 (7%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWF-NKFIDLEYLSLSYNELQGS 335
           +D +    +  +P  I        L L+ N       D    +   L  L L  N+L G 
Sbjct: 13  VDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 336 IPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
            P +    + I+ L L  N+++    + F  L  L+++NL  N++S  +    +  ++  
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
           S          +  F    +     + L    L+        P    ++  ++  D+  +
Sbjct: 130 SLN------LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHS 180

Query: 456 NLN 458
              
Sbjct: 181 EFK 183

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (136), Expect = 5e-09
 Identities = 58/465 (12%), Positives = 105/465 (22%), Gaps = 23/465 (4%)

Query: 295 STSLQHLDLSRNHFSSS-VPDWFNKFIDLEYLSLSYNELQG----SIPGSLGNLTSIKSL 349
           S  +Q LD+     S +   +        + + L    L       I  +L    ++  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 350 DLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL 409
           +L  N L         +     S  +    L              ++          +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 410 FGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANL 469
             LL +          LD         +       +S   L                 N 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 470 TKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNS 529
               G             SP      +L++ G++S              +       SN 
Sbjct: 181 INEAGVRVLCQG---LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 530 SISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSS 589
                + +     L   + L   +    G                 S             
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 590 LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE 649
                L    L            + S      +  ++ L+       +  S       G 
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357

Query: 650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGK----IPVSLQNCTELRLFDISENEFVGNIP 705
            +            S L++L L     S      +  +L     LR  D+S N       
Sbjct: 358 RELC---QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 706 TWIGERL----SGIILLSLRANQFHGFFPPELCGLA----SLKIL 742
             + E +      +  L L    +       L  L     SL+++
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 1e-07
 Identities = 54/480 (11%), Positives = 122/480 (25%), Gaps = 40/480 (8%)

Query: 345 SIKSLDLSFNRL-ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL-DMFSACASNVLESL 402
            I+SLD+    L +++       L+  + V L    L++   + +        +  L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA--LAEL 60

Query: 403 DLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLS 462
           +L +N L  +  + +       S  +   ++        G       L          LS
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 463 ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLI 522
           +N   +    +  +   +                  +    +  +  +     L+ ++  
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 523 YLDLS-NSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSG 581
             +                    ++    ++ +        +   A L  L L SN L  
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 582 PLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSF 641
                         S           +  +    +   +    +        +   +   
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 642 LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFV 701
                                + S        + FS  +  +          +  E+  V
Sbjct: 301 RLLCETLLEPGCQLESL---WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357

Query: 702 GNIPTWIGERLSGIILLSLRANQFHG----FFPPELCGLASLKILDLSSNNLTGVIPRCI 757
             +   +G+  S + +L L                L    SL+ LDLS+N L       +
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 758 NNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNL 817
                             +++                 L+ L L   Y+S E+  ++  L
Sbjct: 418 -----------------VESVRQPGCL-----------LEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 4e-07
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 248 SLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDL 303
            + +LDI   + +D+     +  L     + L            +  A++ + +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQG 334
             N           + +      +    LQ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 123 LIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGF----VGIIPHQIGNLSNLQFLDLR 178
           +  LD+   +    +    L  L+    + +   G        I   +     L  L+LR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 179 PNYLGGLYVEDF--GWVSHLSLLKHLDLSG 206
            N LG + V     G  +    ++ L L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 10/91 (10%)

Query: 272 VNLVFLDLSTNNFQGA-VPDAIQNSTSLQHLDLSRNHFS----SSVPDWFNKFIDLEYLS 326
           +++  LD+       A   + +      Q + L     +      +         L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 327 LSYNELQGSIPGSLG-----NLTSIKSLDLS 352
           L  NEL       +          I+ L L 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-05
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 293 QNSTSLQHLDLSRNHFS----SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG-----NL 343
           Q  + L+ L L+    S    SS+         L  L LS N L  +    L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 344 TSIKSLDLSFNRLESKIPRAFKRLR 368
             ++ L L       ++    + L 
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 273 NLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFID-----LE 323
            L  L L+  +       ++   +  + SL+ LDLS N    +      + +      LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 324 YLSLSYNELQGSIPGSLGNL 343
            L L        +   L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 27/115 (23%)

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258
           ++ LD+   +LS  +    +   L   + +R   C L                       
Sbjct: 4   IQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARC------------------ 44

Query: 259 FADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI-----QNSTSLQHLDLSRNHF 308
                I + +     L  L+L +N         +       S  +Q L L     
Sbjct: 45  ---KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 796 LKVLDLSANYFSGE-IPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM----KSVEALDFS 850
           ++ LD+     S       +  L   Q ++L     +     ++ +      ++  L+  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 851 SNRLQGEIPKNMVNL 865
           SN L       ++  
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 208 DLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFA----NFSSLVTLDISDNQFADSS 263
           D         +      L  L  + C +   S  S A       SL  LD+S+N   D+ 
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 264 IVNQVLGLVN----LVFLDLSTNNFQGAVPDAIQ 293
           I+  V  +      L  L L    +   + D +Q
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.4 bits (134), Expect = 6e-09
 Identities = 47/333 (14%), Positives = 110/333 (33%), Gaps = 26/333 (7%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
               L+L+      ++P+   +   L+ L  S N  +  +P+       L+ L +  N L
Sbjct: 39  QAHELELNNLGLS-SLPELPPH---LESLVASCNSLTE-LPELPQS---LKSLLVDNNNL 90

Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
           + ++      L  +   +    +L      +F ++  + + +L          + +   +
Sbjct: 91  K-ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFK--------NLDSLDLSFNNISGHIPLSLGQL 444
                + E  +L   T      N +             +   ++            L  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 445 SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS 504
            +   L  +  +L  +L   +  +       +   +   L V    ++   +L       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 505 CFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLN 564
                +          L  L++SN+ +   +P        ++  L  S+N +  ++P+L 
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHL-AEVPELP 323

Query: 565 DAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSS 597
               L+ L +  N L    P IP S+  L ++S
Sbjct: 324 --QNLKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.2 bits (131), Expect = 2e-08
 Identities = 49/310 (15%), Positives = 93/310 (30%), Gaps = 12/310 (3%)

Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
                L+L+    SS +P+       LE L  S N L   +P    +L S+   + +   
Sbjct: 38  RQAHELELNNLGLSS-LPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
           L    P           +       +    +++D+ +     + +          G    
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 416 QIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGF 475
           +            +    +  +        SL  +    N L       +   LT +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 476 DASGNSLVLKVVSPSWTPPFQLQA---IGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSIS 532
           +    +L     S                L          + + S    +  +L   + S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 533 DTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTT 592
                 L      +  LN+S N++  ++P L    +LE L  S N L+  +P +P +L  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKL-IELPALP--PRLERLIASFNHLAE-VPELPQNLKQ 328

Query: 593 LDLSSNFLSG 602
           L +  N L  
Sbjct: 329 LHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 7e-08
 Identities = 55/320 (17%), Positives = 97/320 (30%), Gaps = 25/320 (7%)

Query: 322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLR-------HLRSVN 374
              L L+   L  S+P    +L S   L  S N L   +P   + L+       +L++++
Sbjct: 40  AHELELNNLGLS-SLPELPPHLES---LVASCNSLTE-LPELPQSLKSLLVDNNNLKALS 94

Query: 375 LSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS 434
                L         +           L + +     L                +     
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 435 GHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPP 494
                +L  L+++   + S   L               +  +      +  + +      
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 495 FQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYN 554
                  L             L+    +   L+   +S+ I   L +    + YLN S N
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 555 QIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNN 614
           +I            LE L++S+N L   LP +P  L  L  S N L+  +     N    
Sbjct: 275 EIRSLCDLPP---SLEELNVSNNKLIE-LPALPPRLERLIASFNHLA-EVPELPQN---- 325

Query: 615 SMRLQVLNLGNNTLSGEIPD 634
              L+ L++  N L  E PD
Sbjct: 326 ---LKQLHVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 55/326 (16%), Positives = 97/326 (29%), Gaps = 32/326 (9%)

Query: 568 QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCN------EMNNSMRLQVL 621
           Q   L+L++  LS  LP +P  L +L  S N L+  L     +      + NN   L  L
Sbjct: 39  QAHELELNNLGLSS-LPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 96

Query: 622 --NLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK 679
              L    +S    +         FL + + D            S   I           
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL-------------LSLRANQFH 726
              +L   T +   + S  +      +         IL                  N   
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 727 GFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVV 786
              P     L +L + D    +L  +                  +       +      +
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 787 KYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEA 846
           +     P  L+ L++S N    E+P+       L+ L  S N  +  +P      ++++ 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP---ELPQNLKQ 328

Query: 847 LDFSSNRLQGEIPKNMVNLEFLEIFN 872
           L    N L+ E P    ++E L + +
Sbjct: 329 LHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 53/349 (15%), Positives = 104/349 (29%), Gaps = 31/349 (8%)

Query: 393 ACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDV 452
            C       L+L+N  L  L         +L+SL  S N+++  +P       SL+ L V
Sbjct: 34  DCLDRQAHELELNNLGLSSL----PELPPHLESLVASCNSLT-ELPELPQ---SLKSLLV 85

Query: 453 STNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
             NNL         ++L  L+ +    N+ + K+     +   ++  +  +S    P  P
Sbjct: 86  DNNNLKA------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139

Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETL 572
             L               + +      + + +               I   N+  +    
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

Query: 573 DLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEI 632
             +   L+          T  DL  +           N  +N +        + T     
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSL-------EALNVRDNYLTDLPELPQSLTFLDVS 252

Query: 633 PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL 692
            + +   S L       N  +  + +      SL+ L++  N+   ++P        L  
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL-- 309

Query: 693 FDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKI 741
              S N         + E    +  L +  N     FP     +  L++
Sbjct: 310 -IASFNHL-----AEVPELPQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 9e-05
 Identities = 56/343 (16%), Positives = 103/343 (30%), Gaps = 32/343 (9%)

Query: 363 AFKRLRH-----LRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQI 417
           A  RLR         + L+   LS  + ++           LESL  S N+L   L    
Sbjct: 28  AVSRLRDCLDRQAHELELNNLGLS-SLPELPPH--------LESLVASCNSL-TELPELP 77

Query: 418 GNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDA 477
            + K+L   + +   +S   PL      S   L+      N +  +    +   L     
Sbjct: 78  QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 137

Query: 478 SGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPD 537
              SL       +                I           +  + L+   +  +     
Sbjct: 138 LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 197

Query: 538 RLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSS 597
             +++L  +  +    N +            L   D     L      +     + ++ S
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 598 NFLSGTLSRFLCNEMNNSMR--------LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE 649
                  + +  N  +N +R        L+ LN+ NN L  E+P        L  L    
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASF 313

Query: 650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL 692
           N     +P       +L+ LH+  N    + P   ++  +LR+
Sbjct: 314 NHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 230 FSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVP 289
           +      +          SL  L++S+N+     +         L  L  S N+    VP
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKL--IELPA---LPPRLERLIASFNHLA-EVP 320

Query: 290 DAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDL 322
           +  QN   L+ L +  N      PD      DL
Sbjct: 321 ELPQN---LKQLHVEYNPL-REFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 60/332 (18%), Positives = 108/332 (32%), Gaps = 25/332 (7%)

Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ--EISQVLDMFSACASNVLES 401
                L+L+   L S +P     L  L     S N L++  E+ Q L       +N L++
Sbjct: 38  RQAHELELNNLGLSS-LPELPPHLESL---VASCNSLTELPELPQSLKSLL-VDNNNLKA 92

Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTL 461
           L      L  L  +     K  +  + SF  I      SL +L  L          N  L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 462 SENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHL 521
            E         +    + N+ + K+     +    +    +       Q   +L +    
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 522 IYLDLSNSSISDTIPDRLVKSLSQINYLNL-----SYNQIFGQIPDLNDAAQLETLDLSS 576
             L  +   +  ++    V+     +   L       +        L++         +S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 577 NSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW 636
           ++    L  +P SL  L++S+N L   L             L+ L    N L+ E+P+  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR-------LERLIASFNHLA-EVPELP 323

Query: 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI 668
            N   L  LH+  N      P    ++  L++
Sbjct: 324 QN---LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 7e-09
 Identities = 36/237 (15%), Positives = 75/237 (31%), Gaps = 7/237 (2%)

Query: 110 VGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNL 169
           + +          + H+DLS +  +   +   L     L  L++        I + +   
Sbjct: 35  MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 94

Query: 170 SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLR 229
           SNL  L+L        +       S   L +       D ++      + +   ++  L 
Sbjct: 95  SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154

Query: 230 FSGCLLHHISPLSFA---NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS-TNNFQ 285
            SG   +              +LV LD+SD+    +    +   L  L  L LS   +  
Sbjct: 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214

Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGN 342
                 +    +L+ L +       ++         L +L ++ +        ++GN
Sbjct: 215 PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA---LPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 51/306 (16%), Positives = 92/306 (30%), Gaps = 35/306 (11%)

Query: 571 TLDLSSNSLSGPLP--LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTL 628
           TLDL+  +L   +   L+   +       +F+   L+           R+Q ++L N+ +
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-----PFRVQHMDLSNSVI 58

Query: 629 SGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT 688
                                      L   L   S LQ L L G R S  I  +L   +
Sbjct: 59  EVS-----------------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95

Query: 689 ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748
            L   ++S                S   L  L  +    F    +    +     ++  N
Sbjct: 96  NLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154

Query: 749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLS-ANYFS 807
           L+G       +               + +  V  K           YL+ L LS      
Sbjct: 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214

Query: 808 GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEF 867
            E   ++  +  L+TL++      G + +   A+     L  + +         + N + 
Sbjct: 215 PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKN 271

Query: 868 LEIFNI 873
            EI+ I
Sbjct: 272 QEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 9e-09
 Identities = 44/272 (16%), Positives = 101/272 (37%), Gaps = 20/272 (7%)

Query: 198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDN 257
           L + LDL+G +L     G L++  + +    R     +       F+ F  +  +D+S++
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGVIAF---RCPRSFMDQPLAEHFSPFR-VQHMDLSNS 56

Query: 258 QFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSR--NHFSSSVPDW 315
               S++   +     L  L L        + + +  +++L  L+LS        ++   
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 316 FNKFIDLEYLSL------SYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRH 369
            +    L+ L+L      +   +Q ++      +T +       N  +S +    +R  +
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 370 LRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN-NTLFGLLTNQIGNFKNLDSLDL 428
           L  ++LS + + +              N L+ L LS    +      ++G    L +L +
Sbjct: 177 LVHLDLSDSVMLKNDC----FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232

Query: 429 SFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
                 G + L      +L +L ++ ++    
Sbjct: 233 FGIVPDGTLQLL---KEALPHLQINCSHFTTI 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 47/256 (18%), Positives = 92/256 (35%), Gaps = 16/256 (6%)

Query: 125 HLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG 184
            LDL+  +       R L   + ++     R+     +         +Q +DL  + +  
Sbjct: 4   TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 185 LYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC--LLHHISPLS 242
             +     +S  S L++L L G+ L  +           +L  L  SGC           
Sbjct: 61  STLHGI--LSQCSKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLVNLV-----FLDLSTNNFQGAVPDAIQNSTS 297
            ++ S L  L++S         V   +  V+             N  +  +   ++   +
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 298 LQHLDLSRNH-FSSSVPDWFNKFIDLEYLSLSY-NELQGSIPGSLGNLTSIKSLDLSFNR 355
           L HLDLS +    +     F +   L++LSLS   ++       LG + ++K+L +    
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 356 LESKIPRAFKRLRHLR 371
            +  +    + L HL+
Sbjct: 237 PDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 13/247 (5%)

Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSG-P 582
           LDL+  ++   +  RL+     +       + +   + +     +++ +DLS++ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 583 LPLIPS---SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW 639
           L  I S    L  L L    LS  +   L    +N +RL +      +            
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 640 SFLFFLHLGENDFT-----GNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD 694
                      DFT       +     T++ L +   R N     +   ++ C  L   D
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 695 ISENEFVGNIPTWIGERLSGIILLSL-RANQFHGFFPPELCGLASLKILDLSSNNLTGVI 753
           +S++  + N       +L+ +  LSL R          EL  + +LK L +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 754 PRCINNL 760
                 L
Sbjct: 242 QLLKEAL 248

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 35/293 (11%), Positives = 92/293 (31%), Gaps = 44/293 (15%)

Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
           +LDL+   L   +T ++ + + + +     + +   +         ++++D+S + +  +
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNH 520
                 +  +K                         LQ + L    +       L   ++
Sbjct: 62  TLHGILSQCSK-------------------------LQNLSLEGLRLSDPIVNTLAKNSN 96

Query: 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLS 580
           L+ L+LS                    +   +   +      L++       D +   + 
Sbjct: 97  LVRLNLSGC----------------SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 581 GPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWS 640
             +  +  ++T L+LS    +   S            + +    +  L  +    +   +
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 641 FLFFLHL-GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL 692
           +L  L L    D        LG + +L+ L + G    G + +  +    L++
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 43/209 (20%), Positives = 71/209 (33%), Gaps = 25/209 (11%)

Query: 292 IQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL 351
           +    S   ++  + + ++ +P    K  D   L LS N L      +L   T +  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 352 SFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQV------------------LDMFSA 393
              R E    +    L  L +++LS N+L                         L + + 
Sbjct: 63  D--RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 394 CASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
                L+ L L  N L  L    +     L+ L L+ NN++      L  L +L  L + 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 454 TNNLNGTLSENHFANLTKLVGFDASGNSL 482
             N   T+ +  F     L      GN  
Sbjct: 181 -ENSLYTIPKGFF-GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 19/205 (9%)

Query: 562 DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSG---------------TLSR 606
           +++  A    ++    +L+   P +P   T L LS N L                  L R
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 607 FLCNEMNNSMRLQVLNL--GNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLS 664
               ++     L VL     ++     +P        L  L +  N  T     +L  L 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 665 SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQ 724
            LQ L+L+GN      P  L    +L    ++ N         +   L  +  L L+ N 
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENS 183

Query: 725 FHGFFPPELCGLASLKILDLSSNNL 749
            +   P    G   L    L  N  
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 46/217 (21%), Positives = 75/217 (34%), Gaps = 13/217 (5%)

Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHL 301
             +  +S + ++           +   L   +   L LS N         +   T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTA---LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 302 DLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361
           +L R   +    D     +         +    S+P     L ++  LD+SFNRL S   
Sbjct: 61  NLDRAELTKLQVDGTLPVL---GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 362 RAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK 421
            A + L  L+ + L GN+L      +L               L+NN L  L    +   +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-----SLANNNLTELPAGLLNGLE 172

Query: 422 NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
           NLD+L L  N++   IP        L +  +  N   
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 33/211 (15%), Positives = 63/211 (29%), Gaps = 14/211 (6%)

Query: 123 LIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYL 182
            + ++    +     +P  L    +   L++S           +   + L  L+L     
Sbjct: 12  HLEVNCDKRNLT--ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 183 GGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLS 242
                     +     L  L    +  ++    PL+  +L +L  L  S   L  +   +
Sbjct: 67  -------LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD 302
                 L  L +  N+   +     +     L  L L+ NN        +    +L  L 
Sbjct: 120 LRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
           L  N    ++P  F     L +  L  N   
Sbjct: 179 LQENSL-YTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 29/199 (14%), Positives = 52/199 (26%), Gaps = 21/199 (10%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458
              ++        L        K+   L LS N +      +L   + L  L++    L 
Sbjct: 12  HLEVNCDKR---NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 459 GTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS-------------- 504
               +     L  L        SL L   +        +    L+S              
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 505 ----CFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQI 560
                      P  LL+    +      ++    +P  L+  L  ++ L L  N ++   
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 561 PDLNDAAQLETLDLSSNSL 579
                +  L    L  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 40/228 (17%), Positives = 67/228 (29%), Gaps = 12/228 (5%)

Query: 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPN 180
           K    L LS N          L     L  LN+ R         ++  L     L +   
Sbjct: 31  KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDR--------AELTKLQVDGTLPVLGT 81

Query: 181 YLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP 240
                       +   +L     L       TS        L  L+ L   G  L  + P
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 241 LSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH 300
                   L  L +++N          + GL NL  L L  N+    +P     S  L  
Sbjct: 142 GLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 301 LDLSRNHFSSSVP-DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
             L  N +  +    +F +++     ++   +    +     N+ S++
Sbjct: 200 AFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQ 247

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 40/224 (17%), Positives = 66/224 (29%), Gaps = 18/224 (8%)

Query: 633 PDCWMNW-SFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELR 691
           P C ++  +    ++  + + T  LP  L       ILHL  N        +L   T L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 692 LFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTG 751
             ++   E            L  +      ++      P     L +L +LD+S N LT 
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLD----LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 752 VIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIP 811
           +    +  L  +                   K +    +     L+ L L+ N  +    
Sbjct: 115 LPLGALRGLGEL---------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

Query: 812 SQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ 855
             +  L  L TL L  N     IP        +       N   
Sbjct: 166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
           L L+  +    V   ++    + HLDLS N   +  P             L  ++     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALR---CLEVLQASDNALEN 57

Query: 337 PGSLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
              + NL  ++ L L  NRL+     +       L  +NL GN L QE      +     
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 396 S 396
           S
Sbjct: 118 S 118

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 324 YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQE 383
            L L++ +L  ++   L  L  +  LDLS NRL +  P A   LR L  +          
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ-------AS 51

Query: 384 ISQVLDMFSACASNVLESLDLSNNTLFGL-LTNQIGNFKNLDSLDLSFNNISG 435
            + + ++        L+ L L NN L        + +   L  L+L  N++  
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 9e-06
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 7/109 (6%)

Query: 645 LHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI 704
           LHL   D T      L  L  +  L L  NR     P +L     L +   S+N      
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 705 PTWIGERLSGIILLSLRANQFHGFFPPE-LCGLASLKILDLSSNNLTGV 752
                 R   +  L L  N+       + L     L +L+L  N+L   
Sbjct: 60  GVANLPR---LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 571 TLDLSSNSLSGPLPLIP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS 629
            L L+   L+    L     +T LDLS N L           +     L+VL   +N   
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASDNA-- 54

Query: 630 GEIPDCWMNWSFLFFLHLGENDFTG-NLPTSLGTLSSLQILHLRGNRFSGK 679
            E  D   N   L  L L  N          L +   L +L+L+GN    +
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 11/114 (9%)

Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
           + L L+   L        ++L  +  ++LS N+L      +  +                
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ--------A 50

Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNI-SGHIPLSLGQLSSLRYLDVSTNNLNG 459
           +       + + N   L  L L  N +        L     L  L++  N+L  
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 426 LDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLK 485
           L L+  +++  +   L QL  + +LD+S N L         A L  L    AS N+    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNA---L 55

Query: 486 VVSPSWTPPFQLQAIGLSSCFI-GPQFPQWLLSQNHLIYLDLSNSSIS--DTIPDRLVKS 542
                     +LQ + L +  +      Q L+S   L+ L+L  +S+   + I +RL + 
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 543 LSQINYL 549
           L  ++ +
Sbjct: 116 LPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 523 YLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGP 582
            L L++  ++       ++ L  + +L+LS+N++    P L     LE L  S N+L   
Sbjct: 2   VLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 583 LPLIPS-SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE 631
             +     L  L L +N L  + +      + +  RL +LNL  N+L  E
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 115 PSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQF 174
             L  L  + HLDLS+N  + +     L +L  L  L  S      +          LQ 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENVDGVANLP--RLQE 69

Query: 175 LDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPL-ITNSLHSLETL 228
           L L  N L          +     L  L+L G  L +       +   L S+ ++
Sbjct: 70  LLLCNNRLQQS--AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 13/132 (9%)

Query: 173 QFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSG 232
           + L L    L          +  L L+ HLDLS   L            L          
Sbjct: 1   RVLHLAHKDL-----TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE-----VLQA 50

Query: 233 CLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNF---QGAVP 289
                 +    AN   L  L + +N+   S+ +  ++    LV L+L  N+    +G   
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 290 DAIQNSTSLQHL 301
              +   S+  +
Sbjct: 111 RLAEMLPSVSSI 122

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 3e-06
 Identities = 17/81 (20%), Positives = 27/81 (33%)

Query: 299 QHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES 358
             L L++N         FN     E      N L+          +    LD+S  R+ S
Sbjct: 156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215

Query: 359 KIPRAFKRLRHLRSVNLSGNK 379
                 + L+ LR+ +    K
Sbjct: 216 LPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 27/216 (12%), Positives = 58/216 (26%), Gaps = 4/216 (1%)

Query: 137 QIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHL 196
           +IP  L    N + L         I         +L+ +++  N +  +   D       
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 197 SLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISD 256
                + +   +     +     N  +    L  +  + H        +   ++     +
Sbjct: 80  L--HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 137

Query: 257 NQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWF 316
                    + V      V L L+ N  Q     A   +   +      N+      D F
Sbjct: 138 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVF 197

Query: 317 NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS 352
           +       L +S   +       L NL  +++    
Sbjct: 198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 32/239 (13%), Positives = 75/239 (31%), Gaps = 10/239 (4%)

Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384
                +++   IP  L    +   L     +L      AF     L  + +S N + + I
Sbjct: 13  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQL 444
              +         +      +   +         N  NL  L +S   I     +     
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYIN---PEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 445 SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS 504
                LD+  N    T+  N F  L+          + + ++ + ++      +     +
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 505 CFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDL 563
             +           +  + LD+S + I  ++P   +++L ++   +    +   ++P L
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 13/88 (14%), Positives = 22/88 (25%)

Query: 609 CNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI 668
            + +  S    +L L  N +       +             N+            S   I
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 205

Query: 669 LHLRGNRFSGKIPVSLQNCTELRLFDIS 696
           L +   R        L+N  +LR     
Sbjct: 206 LDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 10/238 (4%)

Query: 369 HLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDL 428
             R      +K++ EI   L             L      L  +       F +L+ +++
Sbjct: 9   SNRVFLCQESKVT-EIPSDL-------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60

Query: 429 SFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVS 488
           S N++   I   +       +        N              + +    N+ +  +  
Sbjct: 61  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 120

Query: 489 PSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINY 548
                  Q   + +          +          + L  +            + +Q++ 
Sbjct: 121 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE 180

Query: 549 LNLSYNQIFGQIPD--LNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTL 604
           LNLS N    ++P+   + A+    LD+S   +         +L  L   S +    L
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 25/213 (11%), Positives = 51/213 (23%), Gaps = 23/213 (10%)

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCN-------------------- 610
                 + ++     +P +   L      L                              
Sbjct: 12  VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 71

Query: 611 --EMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI 668
               N     ++     N L    P+ + N   L +L +                    +
Sbjct: 72  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 131

Query: 669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF 728
           L ++ N     I  +           +  N+             + +  L+L  N     
Sbjct: 132 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEE 191

Query: 729 FPPE-LCGLASLKILDLSSNNLTGVIPRCINNL 760
            P +   G +   ILD+S   +  +    + NL
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENL 224

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 27/202 (13%), Positives = 59/202 (29%), Gaps = 6/202 (2%)

Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
           N + L       +     A      L+ +++S+N     +       +   +        
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 333 QGSI--PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDM 390
                 P +  NL +++ L +S   ++               ++    + +  I  +   
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD---IQDNINIHTIERN 146

Query: 391 FSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYL 450
                S     L L+ N +  +        +  +      NN+           S    L
Sbjct: 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206

Query: 451 DVSTNNLNGTLSENHFANLTKL 472
           D+S   ++ +L      NL KL
Sbjct: 207 DISRTRIH-SLPSYGLENLKKL 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 24/233 (10%)

Query: 144 SLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLD 203
           +L N + +   ++     +     +L  +  L      +          V +L+ L  L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-----TTIEGVQYLNNLIGLE 69

Query: 204 LSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSS 263
           L    ++  +    +T       +      +       S        T        A  S
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 264 IVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLE 323
            +  +                   + +    +       LS  +   S          L 
Sbjct: 130 NLQVL-------------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176

Query: 324 YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLS 376
            L    N++    P  L +L ++  + L  N++    P       +L  V L+
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 18/219 (8%)

Query: 244 ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL 303
              ++ + +    +   D+        L  +  L            + +Q   +L  L+L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA 363
             N  +   P      I    LS +  +   +I G     T   +     +         
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV---------LESLDLSNNTLFGLLT 414
            + L    +   + + L+   +           +          L +L   +N +  +  
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI-- 188

Query: 415 NQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
           + + +  NL  + L  N IS   PL+    S+L  + ++
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 35/235 (14%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 511 FPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLE 570
           FP   L+    I +    S+++DT+       L  I  L+     +   I  +     L 
Sbjct: 13  FPDPALAN--AIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGV-TTIEGVQYLNNLI 66

Query: 571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG 630
            L+L  N ++                 N    T      N + N   +  L         
Sbjct: 67  GLELKDNQITDL-----------APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115

Query: 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690
                 +                  +           + +L            L N ++L
Sbjct: 116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL 175

Query: 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLS 745
                 +N+     P      L  +I + L+ NQ        L   ++L I+ L+
Sbjct: 176 TTLKADDNKISDISPL---ASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 30/221 (13%), Positives = 67/221 (30%), Gaps = 25/221 (11%)

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
              N   +    +N++  +  +   L  +  L      +    +      L  L+G +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSN---------- 528
            N +       + T   +L+  G     +        +    L    +++          
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 529 ---SSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL 585
                  + I +    +           N     +  L + ++L TL    N +S   PL
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL 191

Query: 586 IP-SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGN 625
               +L  + L +N +S        + + N+  L ++ L N
Sbjct: 192 ASLPNLIEVHLKNNQISDV------SPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 30/212 (14%), Positives = 59/212 (27%), Gaps = 15/212 (7%)

Query: 270 GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
            L N + +    +N    V  A  +   +  L       ++   +      +L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 330 NELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLD 389
           N++    P       +   L  +  +  S I           +     +         L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 390 MFSACASNVLESLDL---------SNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440
           +     + +     L         S           + N   L +L    N IS   PL 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL- 191

Query: 441 LGQLSSLRYLDVSTNNLNGTLSENHFANLTKL 472
              L +L  + +  N ++      + +NL  +
Sbjct: 192 -ASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 29/228 (12%), Positives = 68/228 (29%), Gaps = 22/228 (9%)

Query: 528 NSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL-I 586
            ++I+   PD    +L+    +    + +   +    D   + TL      ++    +  
Sbjct: 6   PTAINVIFPD---PALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEGVQY 61

Query: 587 PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLH 646
            ++L  L+L  N ++         ++             + ++G      ++ +      
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 647 LGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPT 706
           +       NL              L  +         L   T L+   I   +     P 
Sbjct: 122 VTPLAGLSNLQ------------VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL 169

Query: 707 WIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754
               +L+ +       N+        L  L +L  + L +N ++ V P
Sbjct: 170 ANLSKLTTLKADD---NKISDI--SPLASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 17/218 (7%)

Query: 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLR 178
            L + I +    ++            L+ +  L+    G   I    +  L+NL  L+L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 179 PNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI 238
            N +  L             L    L  V            +   +  T       L ++
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 239 SPLSF--------ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPD 290
             L          +  + L  L       A  S +  +  L  L  L    N      P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 291 AIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS 328
            + +  +L  + L  N  S   P       +L  ++L+
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 25/213 (11%)

Query: 208 DLSKTSDGPLITNS-LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN 266
              K++    +T + L  + TL   G  +  I  +     ++L+ L++ DNQ  D + + 
Sbjct: 25  AAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQITDLAPLK 82

Query: 267 QVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYL- 325
            +  +  L        N           +  L    ++     + + +    ++DL  + 
Sbjct: 83  NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 142

Query: 326 ------------SLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSV 373
                        LS    Q S    L NL+ + +L    N++    P     L +L  V
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEV 200

Query: 374 NLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
           +L  N++S          +  ++  L  + L+N
Sbjct: 201 HLKNNQISDVSP-----LANTSN--LFIVTLTN 226

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 45/320 (14%), Positives = 99/320 (30%), Gaps = 31/320 (9%)

Query: 113 INPSLLGLKHLIHLDLSYNDFQG---IQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNL 169
           +   LL    +  + LS N         +   + S ++L     S      +       L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 170 SNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLR 229
             L    L+   L  + + D  +       + L       +      L  N L      +
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQ--EPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 230 FSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL------------ 277
            +  L          N   L ++    N+  + S+        +   L            
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
           +   +     +    +        +   +  SS++      + +L  L L+   L     
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 338 GSLGN------LTSIKSLDLSFNRLESKIPRA-----FKRLRHLRSVNLSGNKLSQE--- 383
            ++ +         +++L L +N +E    R       +++  L  + L+GN+ S+E   
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320

Query: 384 ISQVLDMFSACASNVLESLD 403
           + ++ ++FS      L+ LD
Sbjct: 321 VDEIREVFSTRGRGELDELD 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 47/336 (13%), Positives = 98/336 (29%), Gaps = 37/336 (11%)

Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG----HIPLSLGQLSSLRYLDVST 454
           L+   ++      +    +    ++  + LS N I       +  ++     L   + S 
Sbjct: 10  LKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS- 67

Query: 455 NNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW 514
           +   G + +     L  L+        L    +S +   P   + +        P    +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 515 LLSQNHL-IYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLD 573
           L +             ++ +   ++  K+   +  +    N++                 
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 574 LSSNSLSGPLPLIPSS-------------LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQV 620
           L +  +                       L  LDL  N  +   S  L   + +   L+ 
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 621 LNLGNNTLSGEIPDCWMNW------SFLFFLHLGENDFTGNLPTSLGT-----LSSLQIL 669
           L L +  LS       ++         L  L L  N+   +   +L T     +  L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 670 HLRGNRFS--GKIPVSLQNCTELR----LFDISENE 699
            L GNRFS    +   ++     R    L ++ + E
Sbjct: 308 ELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 343

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 39/308 (12%), Positives = 89/308 (28%), Gaps = 28/308 (9%)

Query: 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVNLS 376
            L+  +++  + + S+   L    S+K + LS N + ++    +       + L     S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 377 GNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436
                +   ++ +        +L+   L    L             +D L         +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 437 IPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQ 496
           +  +     +   +  +   L       +   L  ++       +  +K  + ++     
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 497 LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKS--------LSQINY 548
           L  + +    I P+  + LL +      +L    + D     L  S           +  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 549 LNLSYNQI-------FGQIPDLNDAAQLETLDLSSNSLSGPLPLI--------PSSLTTL 593
           L L+   +               +   L+TL L  N +                  L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 594 DLSSNFLS 601
           +L+ N  S
Sbjct: 308 ELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 38/308 (12%), Positives = 87/308 (28%), Gaps = 19/308 (6%)

Query: 569 LETLDLSSNSLSGPLPLIP--SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN 626
           L+   +++        ++    S+  + LS N +    +R+L   + +   L++    + 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 627 T---LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS 683
               +  EIP+               +    +      T     I  L  +     + + 
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 684 LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR---ANQFHGFFPPELCGLASLK 740
                      I+       +            ++  R    N     +         L 
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 741 ILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLD 800
            + +  N +       +        + L+V    ++         +   +     L+ L 
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 801 LSANYFSGEIPSQVTN------LVGLQTLKLSHNFFSGRIPVNMGA-----MKSVEALDF 849
           L+    S    + V +       +GLQTL+L +N         +       M  +  L+ 
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 850 SSNRLQGE 857
           + NR   E
Sbjct: 310 NGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 51/334 (15%), Positives = 107/334 (32%), Gaps = 23/334 (6%)

Query: 140 RFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFG-WVSHLSL 198
           RF    ++L    I+       +   +    +++ + L  N +G          ++    
Sbjct: 2   RFSIEGKSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258
           L+  + S +   +  D       L     L+        +S  +F   +    +D     
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 259 FADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP----- 313
                +     GL       ++    + AV    +N+  L+ +   RN   +        
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180

Query: 314 -DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE-------SKIPRAFK 365
               ++ +    +  +    +G     L  L   + L +   +         S +  A K
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240

Query: 366 RLRHLRSVNLSGNKLSQEISQVL-DMFSACASNVLESLDLSNNTLFG-----LLTNQIGN 419
              +LR + L+   LS   +  + D FS   +  L++L L  N +       L T     
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 420 FKNLDSLDLSFNNIS--GHIPLSLGQLSSLRYLD 451
             +L  L+L+ N  S    +   + ++ S R   
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 45/346 (13%), Positives = 91/346 (26%), Gaps = 37/346 (10%)

Query: 248 SLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDL 303
           SL    I+       S+   +L   ++  + LS N         + + I +   L+  + 
Sbjct: 9   SLKLDAITTEDE--KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA 363
           S         +       L                +L     + ++ LS N         
Sbjct: 67  SDIFTGRVKDEIPEALRLL--------------LQALLKCPKLHTVRLSDNAFGPTAQEP 112

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNL 423
                   +        +  +        A A   L     + N           N    
Sbjct: 113 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 172

Query: 424 DSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLV 483
            S+         H  L   ++           +L           L  L   D +   L 
Sbjct: 173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLG 231

Query: 484 LKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL------LSQNHLIYLDLSNSSISD---- 533
              ++ +      L+ +GL+ C +  +    +      L    L  L L  + I      
Sbjct: 232 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 291

Query: 534 TIPDRLVKSLSQINYLNLSYNQI------FGQIPDLNDAAQLETLD 573
           T+   + + +  + +L L+ N+         +I ++        LD
Sbjct: 292 TLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 337

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 6e-06
 Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 19/193 (9%)

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
            F      +L   +++  +  +  +L+S+  +  + +++    S      L  +     +
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 479 GNSL-------------VLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLD 525
           GN L              L +          L+ +               ++    +   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 526 LSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL 585
            S    ++ I D  V S           +     I  L    +L+ L LS N +S    L
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL 196

Query: 586 IP-SSLTTLDLSS 597
               +L  L+L S
Sbjct: 197 AGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 22/209 (10%)

Query: 245 NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS 304
            F+  +  ++      D+   N+   L ++  +  + ++ +      IQ   ++  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLN 76

Query: 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAF 364
            N  +           +L+ L   + +       S              +   S I    
Sbjct: 77  GNKLT-----DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 365 KRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLD 424
              +       +       +   L      +    +  D+            +     L 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----------LAGLTKLQ 181

Query: 425 SLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
           +L LS N+IS  +  +L  L +L  L++ 
Sbjct: 182 NLYLSKNHIS-DLR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 8e-05
 Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 23/210 (10%)

Query: 367 LRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSL 426
                  NL    ++  ++Q          N ++ +  +N+ +  +    I    N+  L
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNE-------LNSIDQIIANNSDIKSV--QGIQYLPNVTKL 73

Query: 427 DLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKV 486
            L+ N ++   PL+  +     +LD +          +  +          S     +  
Sbjct: 74  FLNGNKLTDIKPLANLKNLGWLFLDENKVK-------DLSSLKDLKKLKSLSLEHNGISD 126

Query: 487 VSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQI 546
           ++     P        ++          L   + L   D   S I        +  L+++
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP------LAGLTKL 180

Query: 547 NYLNLSYNQIFGQIPDLNDAAQLETLDLSS 576
             L LS N I   +  L     L+ L+L S
Sbjct: 181 QNLYLSKNHI-SDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 22/219 (10%)

Query: 529 SSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP- 587
           + I     D    + ++    NL    +   +   N+   ++ +  +++ +     +   
Sbjct: 12  TPIKQIFSD---DAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQYL 67

Query: 588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHL 647
            ++T L L+ N L+          +                  +        S      L
Sbjct: 68  PNVTKLFLNGNKLTDIKPLANLKNLGWLFL-------------DENKVKDLSSLKDLKKL 114

Query: 648 GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTW 707
                  N  + +  L  L  L       +    +++ +          E+  + +I   
Sbjct: 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL 174

Query: 708 IGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746
            G  L+ +  L L  N         L GL +L +L+L S
Sbjct: 175 AG--LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 18/184 (9%)

Query: 208 DLSKTSDGPLITNS-LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ------FA 260
           +L K S    +T + L+S++ +  +   +  +  +      ++  L ++ N+       A
Sbjct: 30  NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTDIKPLA 87

Query: 261 DSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFI 320
           +   +  +    N V    S  + +     +++++       L       S+    NK  
Sbjct: 88  NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT 147

Query: 321 DLEYLSLSYNELQGSIPG-------SLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSV 373
           D+  LS        S+          L  LT +++L LS N +     RA   L++L  +
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVL 205

Query: 374 NLSG 377
            L  
Sbjct: 206 ELFS 209

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-- 334
           LDL            +        L+   +  ++++        +L  L+LS N L    
Sbjct: 27  LDLKGLRS----DPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRLYRLD 81

Query: 335 SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
            +   +    ++K L+LS N L+S+      +   L  + L GN LS          SA 
Sbjct: 82  DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

Query: 395 ASNV--LESLD 403
                 L  LD
Sbjct: 142 RERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 216 PLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLV 275
            LI +  +           L     L     +  V L+   +  A   I+ + +    L+
Sbjct: 13  KLIMSKRYDGSQQALDLKGLRSDPDLV--AQNIDVVLNRRSSMAATLRIIEENIP--ELL 68

Query: 276 FLDLSTNNFQG--AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
            L+LS N       +   +Q + +L+ L+LS N   S       K + LE L L  N L 
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

Query: 334 GSIPGSLGNLTSIKSL 349
            +       +++I+  
Sbjct: 129 DTFRDQSTYISAIRER 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 4/136 (2%)

Query: 316 FNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNL 375
           +   +    L L   ++   I      L    ++D S N +       F  LR L+++ +
Sbjct: 14  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 70

Query: 376 SGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG 435
           + N++ +    +          +L +  L        L +                N   
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL-RNPVTNKKH 129

Query: 436 HIPLSLGQLSSLRYLD 451
           +    + ++  +R LD
Sbjct: 130 YRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 2/137 (1%)

Query: 416 QIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGF 475
           Q  N      LDL    I   I      L     +D S N +           L  L+  
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN 71

Query: 476 DASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTI 535
           +      + + +  +     +L     S   +G   P   L     + +  +  +     
Sbjct: 72  NNRICR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130

Query: 536 PDRLVKSLSQINYLNLS 552
              ++  + Q+  L+  
Sbjct: 131 RLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 25/143 (17%), Positives = 42/143 (29%), Gaps = 6/143 (4%)

Query: 267 QVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLS 326
           Q    V    LDL        + +          +D S N       D F     L+ L 
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 327 LSYNELQGSIPGSLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLRSVNLSGNKLSQEIS 385
           ++ N +     G    L  +  L L+ N L           L+ L  + +  N ++ +  
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 386 QVLDMFSACASNVLESLDLSNNT 408
             L +        +  LD     
Sbjct: 130 YRLYVIYKVPQ--VRVLDFQKVK 150

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 32/188 (17%), Positives = 53/188 (28%), Gaps = 20/188 (10%)

Query: 419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478
                    L   N++  +  +   L  +  L      +    S +    L  L   + S
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 70

Query: 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSIS------ 532
            N L       + T    +         I P      L+   L    +++          
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 533 -------DTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL 585
                  +TI D    S           +     +  L +   LE LD+SSN +S    L
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL 190

Query: 586 IPSSLTTL 593
             + LT L
Sbjct: 191 --AKLTNL 196

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 27/207 (13%), Positives = 56/207 (27%), Gaps = 22/207 (10%)

Query: 244 ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL 303
              +  +   +      D+        L  +  L       +    D ++   +L  ++ 
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSI--DGVEYLNNLTQINF 69

Query: 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA 363
           S N  +   P      +         N     I               +    +    + 
Sbjct: 70  SNNQLTDITPLKNLTKLVDIL---MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 126

Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNL 423
              L  L   + + + +S             +SN +  L              + N   L
Sbjct: 127 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK------------PLANLTTL 174

Query: 424 DSLDLSFNNISGHIPLSLGQLSSLRYL 450
           + LD+S N +S      L +L++L  L
Sbjct: 175 ERLDISSNKVSD--ISVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 24/169 (14%), Positives = 57/169 (33%), Gaps = 21/169 (12%)

Query: 397 NVLESLDLSNNTLFGL------LTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYL 450
             + + +     L G+      +   +   K    L LS NNI   I  SL  + +LR L
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRIL 75

Query: 451 DVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQ 510
            +  N +    + +  A+  + +    +  + +  +          +    +++     +
Sbjct: 76  SLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK 135

Query: 511 FPQWLLSQNHLIYLDLSNSSISDTIPD---------RLVKSLSQINYLN 550
                   + L  L L+ + + +   +          +VK L  +  L+
Sbjct: 136 LAAL----DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	873
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.04
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.04
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.67
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.62
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.98

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.4e-38  Score=332.54  Aligned_cols=276  Identities=32%  Similarity=0.504  Sum_probs=170.1

Q ss_pred             cCCHHHHHHHHHhhhcCCCCCCCcCCCccCCCCCCcc--ceeeEecCCC--CcEEEEecCCCCCCCCCchhhhhccccce
Q 045210           34 GCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCK--WYGVVCDNIT--GHVLELRLRNPSRDDGSPAEYEAYERSKI  109 (873)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~~  109 (873)
                      -|.++|++||++||+++.+|. .+++|. . ++|||.  |.||+|+...  +||++|+|++.                ++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~-~-~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~----------------~l   62 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL-P-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL----------------NL   62 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC-T-TSCTTTTCSTTEEECCSSSCCCEEEEEEECC----------------CC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC-C-CCCCCCCcCCCeEEeCCCCcEEEEEEECCCC----------------CC
Confidence            399999999999999998875 689998 4 789994  9999998643  49999999986                55


Q ss_pred             ee--ecccCccCCCCCCeecCCC-CCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCc
Q 045210          110 VG--KINPSLLGLKHLIHLDLSY-NDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLY  186 (873)
Q Consensus       110 ~g--~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~  186 (873)
                      .|  .+|++++++++|++|+|++ |++++. +|..++++++|++|+|++|++.+..|..+..+.+|+++++++|.+....
T Consensus        63 ~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~  141 (313)
T d1ogqa_          63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             CCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccC
Confidence            55  5788888888888888886 677775 8888888888888888888888877777777777777777776543221


Q ss_pred             cCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCc-cEEEcCCCCCCCCchh
Q 045210          187 VEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSL-VTLDISDNQFADSSIV  265 (873)
Q Consensus       187 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~  265 (873)
                                                   +..+..++.++++++++|.+.+..|..+..+..+ +.+++++|+++ +..+
T Consensus       142 -----------------------------p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~-~~~~  191 (313)
T d1ogqa_         142 -----------------------------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIP  191 (313)
T ss_dssp             -----------------------------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECC
T ss_pred             -----------------------------chhhccCcccceeecccccccccccccccccccccccccccccccc-cccc
Confidence                                         1123334444444444444444444444444333 44444444443 3333


Q ss_pred             HhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCC
Q 045210          266 NQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS  345 (873)
Q Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  345 (873)
                      ..+..+.. ..++++.+...+.+|..+..+++++.+++++|.+.+.+| .++.+++|++|++++|+++|.+|.+++++++
T Consensus       192 ~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~  269 (313)
T d1ogqa_         192 PTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             GGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCC
Confidence            33333322 234444444444444444444444444444444443322 2444444444444444444444444444444


Q ss_pred             CCEEeCCCCcCCCcch
Q 045210          346 IKSLDLSFNRLESKIP  361 (873)
Q Consensus       346 L~~L~L~~n~l~~~~~  361 (873)
                      |++|+|++|+++|.+|
T Consensus       270 L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         270 LHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             CCEEECCSSEEEEECC
T ss_pred             CCEEECcCCcccccCC
Confidence            4444444444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.1e-29  Score=266.01  Aligned_cols=249  Identities=28%  Similarity=0.419  Sum_probs=163.5

Q ss_pred             CCCeEeCCCCCCCCC--CCCC---CCCCcEEEccC-ccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhcccc
Q 045210          568 QLETLDLSSNSLSGP--LPLI---PSSLTTLDLSS-NFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSF  641 (873)
Q Consensus       568 ~L~~L~l~~n~l~~~--~~~~---~~~L~~L~l~~-n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  641 (873)
                      +++.|+++++.+.+.  +|..   +++|++|++++ |+++|.+|..+    +++++|++|++++|++.+..+..+..+..
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i----~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc----ccccccchhhhccccccccccccccchhh
Confidence            466677777766653  3332   45666666664 56666666543    33666666666666666666666666666


Q ss_pred             CcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCC-cEEEccCCeecccCChhHHhhcccCcEEEc
Q 045210          642 LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL-RLFDISENEFVGNIPTWIGERLSGIILLSL  720 (873)
Q Consensus       642 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L  720 (873)
                      |+.+++++|.+.+.+|..+.++++|+.+++++|++.+.+|..+..+..+ +.+++++|++++..|..+.. + ....+++
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~-l-~~~~l~l  204 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-L-NLAFVDL  204 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-C-CCSEEEC
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc-c-ccccccc
Confidence            6666666666666666666666666666666666666666666665554 56666666666666655542 3 3345666


Q ss_pred             cCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEE
Q 045210          721 RANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLD  800 (873)
Q Consensus       721 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  800 (873)
                      +++...+.+|..+..+++++.+++++|.+++.+| .++.++                                 .++.||
T Consensus       205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~---------------------------------~L~~L~  250 (313)
T d1ogqa_         205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK---------------------------------NLNGLD  250 (313)
T ss_dssp             CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCT---------------------------------TCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccc-cccccc---------------------------------cccccc
Confidence            6666666666666666666666666666665544 233333                                 347788


Q ss_pred             CCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCc-cccc
Q 045210          801 LSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNR-LQGE  857 (873)
Q Consensus       801 ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g~  857 (873)
                      +++|+++|.+|++++++++|++|+|++|+++|.+|+ ++++++|+.+++++|+ +.|.
T Consensus       251 Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             CccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            888888888888888888888888888888888875 4777888888888886 4443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2e-24  Score=235.07  Aligned_cols=190  Identities=27%  Similarity=0.327  Sum_probs=114.5

Q ss_pred             hcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEc
Q 045210          516 LSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDL  595 (873)
Q Consensus       516 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l  595 (873)
                      ..+++++.+++++|.+.+..|.   ...++|++|++++|.++. ++.+..+++|+.+++++|.+++              
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~--------------  255 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISN--------------  255 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCC--------------
T ss_pred             ccccccceeeccCCccCCCCcc---cccCCCCEEECCCCCCCC-cchhhcccccchhccccCccCC--------------
Confidence            3444555555555555443332   234456666666665543 2344445555555555544433              


Q ss_pred             cCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCc
Q 045210          596 SSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNR  675 (873)
Q Consensus       596 ~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~  675 (873)
                             ..+      +..+++|+.|+++++++++..  .+..++.++.+.+++|.+.+.  ..+..+++++.|++++|+
T Consensus       256 -------~~~------~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         256 -------LAP------LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             -------CGG------GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSC
T ss_pred             -------CCc------ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCC
Confidence                   211      233566666666666665432  355666777777777776642  336667777777777777


Q ss_pred             ccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCC
Q 045210          676 FSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSN  747 (873)
Q Consensus       676 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  747 (873)
                      +++..  .+..+++|++|++++|+++ .+| .+.. +++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       319 l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~-l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         319 ISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLAN-LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGG-CTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcC-CCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            76543  2667777777777777776 344 3443 7777777777777776543  677788888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=3.4e-24  Score=233.27  Aligned_cols=324  Identities=23%  Similarity=0.331  Sum_probs=227.9

Q ss_pred             cCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210          118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS  197 (873)
Q Consensus       118 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~  197 (873)
                      ..+.+|++|++++++++..   +.++.+++|++|++++|++++..  .++++++|++|++++|++..++.     +++++
T Consensus        41 ~~l~~l~~L~l~~~~I~~l---~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~-----l~~l~  110 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-----LANLT  110 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-----GTTCT
T ss_pred             HHhCCCCEEECCCCCCCCc---cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc-----ccccc
Confidence            4567788888888888753   35677888888888888877643  38888888888888888876543     67788


Q ss_pred             CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCc-------------------cccCCCCCccEEEcCCCC
Q 045210          198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP-------------------LSFANFSSLVTLDISDNQ  258 (873)
Q Consensus       198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~l~~l~~L~~L~L~~n~  258 (873)
                      +|+.|+++++.+++...    ......+.......+.+.....                   ..+...+.........+.
T Consensus       111 ~L~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         111 NLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             TCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc
Confidence            88888888887776532    2334455555555554433322                   223334444455555554


Q ss_pred             CCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcc
Q 045210          259 FADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPG  338 (873)
Q Consensus       259 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  338 (873)
                      ..   .......+++++.+++++|.+++..|  ...+++|++|++++|.++. + ..+..+++|+.+++++|.+++..  
T Consensus       187 ~~---~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--  257 (384)
T d2omza2         187 VS---DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--  257 (384)
T ss_dssp             CC---CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--
T ss_pred             cc---cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--
Confidence            33   23455677888888888888876544  4567788888888888774 3 35778888888888888887543  


Q ss_pred             cccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccC
Q 045210          339 SLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG  418 (873)
Q Consensus       339 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  418 (873)
                      .++.+++|++|+++++++++..  .+..++.++.+.+..|.+.+...     +..+  ..++.|++++|++++..+  +.
T Consensus       258 ~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~~-----~~~~--~~l~~L~ls~n~l~~l~~--l~  326 (384)
T d2omza2         258 PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP-----ISNL--KNLTYLTLYFNNISDISP--VS  326 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG-----GGGC--TTCSEEECCSSCCSCCGG--GG
T ss_pred             cccccccCCEeeccCcccCCCC--ccccccccccccccccccccccc-----cchh--cccCeEECCCCCCCCCcc--cc
Confidence            3778888888888888887643  36778888888888888776432     1111  238888888888887533  67


Q ss_pred             CCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCC
Q 045210          419 NFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN  480 (873)
Q Consensus       419 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  480 (873)
                      .+++|++|++++|++++ ++ .+.++++|++|++++|++++..   .+.++++|+.|++++|
T Consensus       327 ~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~---~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         327 SLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCG---GGTTCTTCSEEECCCE
T ss_pred             cCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCCh---hhccCCCCCEeeCCCC
Confidence            78888888888888874 44 5788888888888888887543   2677888888888776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.5e-23  Score=217.00  Aligned_cols=232  Identities=22%  Similarity=0.326  Sum_probs=149.4

Q ss_pred             ecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccc
Q 045210          112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFG  191 (873)
Q Consensus       112 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~  191 (873)
                      ++|+.+.  +++++|+|++|+++.. .+..+.++++|++|++++|.+....|..|.++++|++|++++|+++.++...  
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--   98 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--   98 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--
T ss_pred             ccCCCCC--CCCCEEECcCCcCCCc-ChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--
Confidence            3455443  5789999999988864 2346888999999999999988888888888889999998888877665431  


Q ss_pred             cccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCC-CchhHhhcC
Q 045210          192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-SSIVNQVLG  270 (873)
Q Consensus       192 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~  270 (873)
                                                    .+.++.|++.+|.+..+.+..+.....++.++...+.... ......+..
T Consensus        99 ------------------------------~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~  148 (305)
T d1xkua_          99 ------------------------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG  148 (305)
T ss_dssp             ------------------------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             ------------------------------hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccc
Confidence                                          2344555555555555555555566666666666654321 112334555


Q ss_pred             CCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEe
Q 045210          271 LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLD  350 (873)
Q Consensus       271 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  350 (873)
                      +++|+++++++|.++ .+|..+  +++|++|++++|...+..+..+..++.+++|++++|.+++..+.++..+++|++|+
T Consensus       149 l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            666666666666655 233322  45666666666666666666666666666666666666665566666666666666


Q ss_pred             CCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 045210          351 LSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ  382 (873)
Q Consensus       351 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  382 (873)
                      +++|+++. +|.++..+++|++|++++|+++.
T Consensus       226 L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         226 LNNNKLVK-VPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CCSSCCSS-CCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cccccccc-cccccccccCCCEEECCCCccCc
Confidence            66666653 35556666666666666555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.4e-23  Score=213.56  Aligned_cols=256  Identities=21%  Similarity=0.217  Sum_probs=204.7

Q ss_pred             eEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcC-C
Q 045210          571 TLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLG-E  649 (873)
Q Consensus       571 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~-~  649 (873)
                      .++.+++.++......++++++|++++|+++...+..    +.+++.|++|++++|++.+..+..+..++.++.+... .
T Consensus        15 ~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHH----hhccccccccccccccccccccccccccccccccccccc
Confidence            3455555555332235677888888888887655443    4558899999999999998888888888889888765 5


Q ss_pred             CcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeC
Q 045210          650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFF  729 (873)
Q Consensus       650 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~  729 (873)
                      +.+....|..+.++++|++|++++|.+....+..+..+++|+.+++++|+++ .+|...+..+++|+.|++++|++.+..
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccc
Confidence            5566666778899999999999999998777888888999999999999998 566555555889999999999999888


Q ss_pred             CcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCccccc
Q 045210          730 PPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE  809 (873)
Q Consensus       730 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  809 (873)
                      +..+..+++|+.+++++|.+++..|..|+.++++                                 +.||+++|++++.
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L---------------------------------~~L~l~~N~i~~~  216 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL---------------------------------MTLYLFANNLSAL  216 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC---------------------------------CEEECCSSCCSCC
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhc---------------------------------ccccccccccccc
Confidence            8888999999999999999998888888877765                                 7899999999988


Q ss_pred             CChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccccccC
Q 045210          810 IPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNL  865 (873)
Q Consensus       810 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l  865 (873)
                      .|..++++++|+.|++++|++.+..+.. .-...++.+....+++.+..|..+.+.
T Consensus       217 ~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~g~  271 (284)
T d1ozna_         217 PTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGR  271 (284)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred             cccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHcCC
Confidence            8888999999999999999998765421 122345667777888888888888763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.3e-21  Score=205.00  Aligned_cols=281  Identities=23%  Similarity=0.264  Sum_probs=204.5

Q ss_pred             cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCc
Q 045210          520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN  598 (873)
Q Consensus       520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  598 (873)
                      ..+.++-++.+++ .+|..+.   +++++|++++|+++...+ .+..+++|++|++++|.+....|              
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~--------------   72 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP--------------   72 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT--------------
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccch--------------
Confidence            3556666666665 5565432   467777777777776555 56666666666666665554332              


Q ss_pred             cCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcc--
Q 045210          599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF--  676 (873)
Q Consensus       599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--  676 (873)
                             ..    +.++++|+.|++++|+++. +|..+  ...++.|++.+|.+.+..+..+.....++.++...|..  
T Consensus        73 -------~~----f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          73 -------GA----FAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             -------TT----TTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             -------hh----hhCCCccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccc
Confidence                   22    3346777777887777763 44332  34677788888888766656666777778888877753  


Q ss_pred             cccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChh
Q 045210          677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC  756 (873)
Q Consensus       677 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  756 (873)
                      ....+..+..+++|+.+++++|.+. .+|..+   +++|+.|++++|...+..+..+..++.++.|++++|.+++..|..
T Consensus       139 ~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~  214 (305)
T d1xkua_         139 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS  214 (305)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cCCCccccccccccCccccccCCcc-ccCccc---CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc
Confidence            3445567788889999999999887 677654   678999999999999999999999999999999999999877777


Q ss_pred             hhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCC-
Q 045210          757 INNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP-  835 (873)
Q Consensus       757 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-  835 (873)
                      +.++++|                                 ++|+|++|+++ .+|.++.++++|++|+|++|+++..-+ 
T Consensus       215 ~~~l~~L---------------------------------~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~  260 (305)
T d1xkua_         215 LANTPHL---------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN  260 (305)
T ss_dssp             GGGSTTC---------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             ccccccc---------------------------------eeeeccccccc-ccccccccccCCCEEECCCCccCccChh
Confidence            7766665                                 89999999998 689999999999999999999984322 


Q ss_pred             -----ccccCCCCCCeEeccCCccc-cccccc-cccCCCCCc
Q 045210          836 -----VNMGAMKSVEALDFSSNRLQ-GEIPKN-MVNLEFLEI  870 (873)
Q Consensus       836 -----~~l~~l~~L~~L~ls~N~l~-g~iP~~-l~~l~~L~~  870 (873)
                           .....+.+|+.|++++|++. ..+|++ +.-+...+.
T Consensus       261 ~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~  302 (305)
T d1xkua_         261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  302 (305)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             hccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcc
Confidence                 23346788999999999985 445443 444444433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.8e-22  Score=204.49  Aligned_cols=209  Identities=23%  Similarity=0.255  Sum_probs=159.0

Q ss_pred             CCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCC
Q 045210          146 ENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSL  225 (873)
Q Consensus       146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L  225 (873)
                      +.+++|+|++|++++..+.+|.++++|++|++++|.+..++...                             ...++.+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~-----------------------------~~~~~~~   82 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-----------------------------FTGLALL   82 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-----------------------------TTTCTTC
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccc-----------------------------ccccccc
Confidence            45667777777766555556667777777777766665544332                             2233444


Q ss_pred             CEEEc-cCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECC
Q 045210          226 ETLRF-SGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS  304 (873)
Q Consensus       226 ~~L~L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  304 (873)
                      +.+.. ..+.+..+.+..|.++++|++|++++|.+. ......+....+|+.+++++|.+++..+..+..+++|++|+++
T Consensus        83 ~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~  161 (284)
T d1ozna_          83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH  161 (284)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cccccccccccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccc
Confidence            44433 234455666777788888888888888775 3345566677888888888888887767788888999999999


Q ss_pred             CCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchh
Q 045210          305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI  384 (873)
Q Consensus       305 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  384 (873)
                      +|.+.+..+.++..+++|+++++++|++++..|..|..+++|++|++++|.+.+..+..++.+++|++|++++|++....
T Consensus       162 ~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            99998777888889999999999999999888899999999999999999999888889999999999999999887653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3e-21  Score=197.17  Aligned_cols=199  Identities=21%  Similarity=0.209  Sum_probs=130.0

Q ss_pred             CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210          616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI  695 (873)
Q Consensus       616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  695 (873)
                      ..+.+++.++++++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++. +| .++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            34455566666666 3454442  356667777777665444566667777777777776663 22 2356667777777


Q ss_pred             cCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210          696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE  775 (873)
Q Consensus       696 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~  775 (873)
                      ++|+++ .+|..+.. +++|+.|++++|.+.+..+..+..+.+++.|++++|.+++..+..+..+..+            
T Consensus        85 s~N~l~-~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l------------  150 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------  150 (266)
T ss_dssp             CSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred             cccccc-cccccccc-ccccccccccccccceeeccccccccccccccccccccceeccccccccccc------------
Confidence            777766 34444443 6777777777777766666666677777777777777775444444444443            


Q ss_pred             hheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210          776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ  855 (873)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  855 (873)
                                           +.+++++|++++..|..++.+++|++|+|++|+++ .+|.++..+++|+.|+|++|++.
T Consensus       151 ---------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         151 ---------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ---------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ---------------------hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence                                 67777777777666666777777777777777777 67777777777777777777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-20  Score=191.51  Aligned_cols=195  Identities=24%  Similarity=0.281  Sum_probs=170.1

Q ss_pred             ccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcE
Q 045210          638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL  717 (873)
Q Consensus       638 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  717 (873)
                      ....+.+++.+++.++ .+|+.+.  +++++|+|++|++++..+..|.++++|++|+|++|+++ .+|.. . .+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-ccccccc
Confidence            4556778899999999 5787664  68999999999999877788999999999999999998 56653 3 4999999


Q ss_pred             EEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccce
Q 045210          718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLK  797 (873)
Q Consensus       718 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  797 (873)
                      |++++|++++ ++..+..+++|+.|++++|.+.+..+..+..+..                                 ++
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---------------------------------l~  127 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---------------------------------LQ  127 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---------------------------------CC
T ss_pred             cccccccccc-cccccccccccccccccccccceeeccccccccc---------------------------------cc
Confidence            9999999985 4678899999999999999998666655555444                                 48


Q ss_pred             EEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccccccCCCCCcccC
Q 045210          798 VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI  873 (873)
Q Consensus       798 ~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l  873 (873)
                      .|++++|.+++..+..+..++.|+.+++++|++++..|..++.+++|++|||++|+++ .||.++..++.|+.|++
T Consensus       128 ~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred             cccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEe
Confidence            9999999999777777889999999999999999988888999999999999999999 89999999999998875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-20  Score=209.46  Aligned_cols=209  Identities=20%  Similarity=0.220  Sum_probs=105.1

Q ss_pred             CccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCC----CChhhhcCCCCCCEEECCCCCCCCCCchhhh-----c
Q 045210          248 SLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN-----K  318 (873)
Q Consensus       248 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~-----~  318 (873)
                      +|++||++++++++..+...+..++++++|+|++|.++.    .++..+..+++|++|++++|.++......+.     .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466666666666654455555666667777777776652    2344456666777777777665421111121     1


Q ss_pred             CCCcCEEEccCCcCCcc----CcccccCCCCCCEEeCCCCcCCCcchhhhh-----cCCCCCEEEccCCcCcchhhHHHH
Q 045210          319 FIDLEYLSLSYNELQGS----IPGSLGNLTSIKSLDLSFNRLESKIPRAFK-----RLRHLRSVNLSGNKLSQEISQVLD  389 (873)
Q Consensus       319 l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~~~~  389 (873)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.++......+.     ........................
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            24577777777766532    334455667777777777766532221111     112333444444433322221111


Q ss_pred             -HhhhcccccccEEEccCcccCCcc----cccc-CCCCCCCEEeCCCCccCcc----ccccccCCCCCCEEEccCccCC
Q 045210          390 -MFSACASNVLESLDLSNNTLFGLL----TNQI-GNFKNLDSLDLSFNNISGH----IPLSLGQLSSLRYLDVSTNNLN  458 (873)
Q Consensus       390 -~~~~~~~~~L~~L~L~~n~l~~~~----~~~l-~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  458 (873)
                       .....  ..++.++++++......    ...+ ..-.....+++..+.+...    ....+...+.++.+++.+|.+.
T Consensus       163 ~~l~~~--~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         163 SVLRAK--PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHC--TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             cccccc--cccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence             11111  12666666665543211    0011 1123455666666655422    1123445667777777777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-19  Score=202.34  Aligned_cols=171  Identities=18%  Similarity=0.083  Sum_probs=96.6

Q ss_pred             CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhh-----hccccCcEEEcCCCcCccCCcc----
Q 045210          588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW-----MNWSFLFFLHLGENDFTGNLPT----  658 (873)
Q Consensus       588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~p~----  658 (873)
                      ..++.+++++|.+...........+...+.++.+++++|.++......+     .....|+.+++++|.++.....    
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc
Confidence            4555566666655544333333334445666777777766653221111     1234577777777766543222    


Q ss_pred             cccCCCCccEEEccCCccccc----CCcccc-cCCCCcEEEccCCeeccc----CChhHHhhcccCcEEEccCCeeeeeC
Q 045210          659 SLGTLSSLQILHLRGNRFSGK----IPVSLQ-NCTELRLFDISENEFVGN----IPTWIGERLSGIILLSLRANQFHGFF  729 (873)
Q Consensus       659 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~Ls~n~l~~~----ip~~~~~~l~~L~~L~L~~n~l~~~~  729 (873)
                      .+...++|++|+|++|++...    ++..+. ..+.|++|++++|.+++.    ++..+.. .++|++|++++|+++...
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHH
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhc-CCCCCEEECCCCcCCHHH
Confidence            223455677777777776543    222232 355677777777777642    2333332 577777777777776432


Q ss_pred             Cc----ccC-CCCCCCEEeCCCCccccccChhhhh
Q 045210          730 PP----ELC-GLASLKILDLSSNNLTGVIPRCINN  759 (873)
Q Consensus       730 p~----~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~  759 (873)
                      ..    .+. +.+.|+.|++.+|.+....++.+..
T Consensus       414 ~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~  448 (460)
T d1z7xw1         414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  448 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHH
Confidence            22    222 3357999999999988665555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=7.5e-17  Score=172.16  Aligned_cols=307  Identities=23%  Similarity=0.285  Sum_probs=179.1

Q ss_pred             cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCcc
Q 045210          520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF  599 (873)
Q Consensus       520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  599 (873)
                      +++.||++++.++ .+|+    ..++|++|++++|+++. +|..  +.+|+.|++++|.++ .++..++.|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~-lp~~--~~~L~~L~l~~n~l~-~l~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCS-CCCSCCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCcc-cccc--hhhhhhhhhhhcccc-hhhhhccccccccccccc
Confidence            5677777777775 4664    24677888888777773 3422  356778888877766 344556678888888887


Q ss_pred             CcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCccccc
Q 045210          600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK  679 (873)
Q Consensus       600 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  679 (873)
                      +.. +|.     ++.+++|+.|++++|.+.... .   ....+..+.+.++....  +..+..++.++.+++++|.....
T Consensus       110 l~~-lp~-----~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         110 LEK-LPE-----LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSS-CCC-----CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred             ccc-ccc-----hhhhccceeeccccccccccc-c---ccccccchhhccccccc--cccccccccceeccccccccccc
Confidence            764 332     334677888888877776332 2   23455566666655542  34466677777777777766522


Q ss_pred             CCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhh
Q 045210          680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN  759 (873)
Q Consensus       680 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  759 (873)
                       +.   .....+.+..+++.+. .+|...  .++.|+.+++++|.... +|.   ...++..+++.++.+.. .+.....
T Consensus       178 -~~---~~~~~~~l~~~~~~~~-~~~~~~--~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~-~~~~~~~  245 (353)
T d1jl5a_         178 -PD---LPLSLESIVAGNNILE-ELPELQ--NLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPELPQS  245 (353)
T ss_dssp             -CC---CCTTCCEEECCSSCCS-SCCCCT--TCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCCCTT
T ss_pred             -cc---cccccccccccccccc-cccccc--ccccccccccccccccc-ccc---ccccccccccccccccc-ccccccc
Confidence             21   1123344555544443 344322  26666666666665542 222   23455666666665552 2222222


Q ss_pred             hhcCchhhcchh--hhc-hhh--eeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC
Q 045210          760 LAGMAKEVLEVD--KFF-EDA--LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI  834 (873)
Q Consensus       760 l~~L~~~~~~~~--~~~-~~~--~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  834 (873)
                      +...........  ... ...  ...........+ ..+++|++|++++|+++ .+|..   +++|+.|+|++|+++ .+
T Consensus       246 l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l  319 (353)
T d1jl5a_         246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC-DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EV  319 (353)
T ss_dssp             CCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC-CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CC
T ss_pred             ccccccccccccccccccchhcccccccCcccccc-ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cc
Confidence            111100000000  000 000  000011111222 12678999999999998 78864   578999999999998 68


Q ss_pred             CccccCCCCCCeEeccCCccccccccccccCCCCC
Q 045210          835 PVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLE  869 (873)
Q Consensus       835 p~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~  869 (873)
                      |..   +++|+.|++++|+++ .+|.....|..|+
T Consensus       320 ~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L~  350 (353)
T d1jl5a_         320 PEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR  350 (353)
T ss_dssp             CCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred             ccc---cCCCCEEECcCCcCC-CCCccccccCeeE
Confidence            864   568999999999987 7887666665554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=1.4e-15  Score=161.97  Aligned_cols=76  Identities=24%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210          121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK  200 (873)
Q Consensus       121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~  200 (873)
                      .++++|||++++++.  +|+.   .++|++|++++|+++ .+|..+   .+|+.|++++|.++.++.-       .+.|+
T Consensus        38 ~~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~~l-------p~~L~  101 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDL-------PPLLE  101 (353)
T ss_dssp             HTCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCCSC-------CTTCC
T ss_pred             cCCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhhhh-------ccccc
Confidence            468899999998875  6653   467888888888877 456543   4677888888776654321       12355


Q ss_pred             EEeCCCCCCCCC
Q 045210          201 HLDLSGVDLSKT  212 (873)
Q Consensus       201 ~L~L~~~~l~~~  212 (873)
                      +|++++|.+..+
T Consensus       102 ~L~L~~n~l~~l  113 (353)
T d1jl5a_         102 YLGVSNNQLEKL  113 (353)
T ss_dssp             EEECCSSCCSSC
T ss_pred             cccccccccccc
Confidence            555555555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.3e-16  Score=156.36  Aligned_cols=188  Identities=21%  Similarity=0.333  Sum_probs=107.7

Q ss_pred             cCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210          118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS  197 (873)
Q Consensus       118 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~  197 (873)
                      +.+++|++|++.+|+++.  + +.++++++|++|++++|.+++..|  +.++++|+++++++|.++.++     .+.+  
T Consensus        38 ~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-----~l~~--  105 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-----AIAG--  105 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-----GGTT--
T ss_pred             HHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc-----cccc--
Confidence            445556666666665553  2 235556666666666665554322  555555555555555544332     1334  


Q ss_pred             CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEE
Q 045210          198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL  277 (873)
Q Consensus       198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  277 (873)
                                              +++|+.+.++++...+..  .+...+.++.+.++++.+..   ...+...++|++|
T Consensus       106 ------------------------l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~L~~L  156 (227)
T d1h6ua2         106 ------------------------LQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITN---ISPLAGLTNLQYL  156 (227)
T ss_dssp             ------------------------CTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCC---CGGGGGCTTCCEE
T ss_pred             ------------------------cccccccccccccccccc--hhccccchhhhhchhhhhch---hhhhccccccccc
Confidence                                    445555555554444332  24455666666666665542   1234556667777


Q ss_pred             EccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCC
Q 045210          278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS  352 (873)
Q Consensus       278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  352 (873)
                      ++++|.+.+..  .++++++|++|++++|.+++ ++ .++.+++|++|++++|++++ ++ .++++++|++|+++
T Consensus       157 ~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         157 SIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEE
T ss_pred             cccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEee
Confidence            77776665332  36667777777777777664 33 36677777777777777764 33 26777777777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=9.7e-17  Score=159.10  Aligned_cols=209  Identities=23%  Similarity=0.320  Sum_probs=154.4

Q ss_pred             CCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCC
Q 045210          120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLL  199 (873)
Q Consensus       120 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L  199 (873)
                      ++++..++++.+.+++.   ..+..+.+|++|++.+|.++..  ..+.++++|++|++++|.++.+.+            
T Consensus        18 l~~~~~~~l~~~~~~d~---~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~------------   80 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP------------   80 (227)
T ss_dssp             HHHHHHHHTTCSSTTSE---ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG------------
T ss_pred             HHHHHHHHhCCCCcCCc---CCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc------------
Confidence            34444556666666653   2345566777777777776643  246666667777666666554321            


Q ss_pred             cEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEc
Q 045210          200 KHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDL  279 (873)
Q Consensus       200 ~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  279 (873)
                                         +..+++++.+++++|.++.+  ..+.++++|+.++++++....   ...+...+.++.+.+
T Consensus        81 -------------------l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~---~~~~~~~~~~~~l~~  136 (227)
T d1h6ua2          81 -------------------LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYL  136 (227)
T ss_dssp             -------------------GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC---CGGGTTCTTCCEEEC
T ss_pred             -------------------cccccccccccccccccccc--ccccccccccccccccccccc---cchhccccchhhhhc
Confidence                               34556666666666666544  358899999999999998763   234667889999999


Q ss_pred             cCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCc
Q 045210          280 STNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK  359 (873)
Q Consensus       280 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  359 (873)
                      +.+.+...  ..+..+++|++|++++|.+.+..  .++++++|++|++++|++++ ++ .++.+++|++|++++|++++.
T Consensus       137 ~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         137 DLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             CSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             hhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC
Confidence            99988754  34778899999999999987433  38899999999999999985 44 489999999999999999865


Q ss_pred             chhhhhcCCCCCEEEccC
Q 045210          360 IPRAFKRLRHLRSVNLSG  377 (873)
Q Consensus       360 ~~~~l~~l~~L~~L~L~~  377 (873)
                      .  .++++++|+.|++++
T Consensus       211 ~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         211 S--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             G--GGTTCTTCCEEEEEE
T ss_pred             c--ccccCCCCCEEEeeC
Confidence            3  388999999999864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.9e-16  Score=154.43  Aligned_cols=180  Identities=23%  Similarity=0.346  Sum_probs=100.3

Q ss_pred             EeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCee
Q 045210          621 LNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEF  700 (873)
Q Consensus       621 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  700 (873)
                      ..+..+.+++.++.  ..+.+|++|++++|.++.. + .+..+++|++|++++|++++..  .++.+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            34555555554432  3456677777777776642 2 3666777777777777766432  245666677777777766


Q ss_pred             cccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheee
Q 045210          701 VGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIV  780 (873)
Q Consensus       701 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~  780 (873)
                      + .+|. +. .+++|+.|++++|.+...  +.+..++.++.+++++|.+++.  ..+..+++                  
T Consensus       103 ~-~l~~-l~-~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~------------------  157 (210)
T d1h6ta2         103 K-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK------------------  157 (210)
T ss_dssp             C-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT------------------
T ss_pred             c-cccc-cc-cccccccccccccccccc--cccccccccccccccccccccc--cccccccc------------------
Confidence            5 3442 32 256666666666655421  2455556666666666665521  12222222                  


Q ss_pred             ecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEecc
Q 045210          781 YKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFS  850 (873)
Q Consensus       781 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  850 (873)
                                     |+.+++++|++++ ++ .++++++|++|++++|++++ +| .++.+++|+.|+++
T Consensus       158 ---------------L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         158 ---------------LDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             ---------------CSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             ---------------ccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence                           3566666666653 22 25566666666666666652 43 35566666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=158.89  Aligned_cols=202  Identities=17%  Similarity=0.138  Sum_probs=137.6

Q ss_pred             CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCc-ccccCCCCccEEEccC-CcccccCCcccccCCCCcEE
Q 045210          616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLP-TSLGTLSSLQILHLRG-NRFSGKIPVSLQNCTELRLF  693 (873)
Q Consensus       616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L  693 (873)
                      +++++|++++|+++...+..|.++++|++|++++|.+...++ ..|.+++.++++.+.+ |.+....+..|.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            357777787777775555567888888888888888775443 4577788888887764 56777777778888888888


Q ss_pred             EccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCC-CCCEEeCCCCccccccChhhhhhhcCchhhcchhh
Q 045210          694 DISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA-SLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK  772 (873)
Q Consensus       694 ~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~  772 (873)
                      ++++|.+...-+......+..+..+...++.+....+..+..++ .++.|++++|+++. ++....+...+         
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l---------  178 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQL---------  178 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCE---------
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhh---------
Confidence            88888887332222222245555556666677766666666654 78888999988884 44433322222         


Q ss_pred             hchhheeeecccceeccCCCCccceEEECCCCcccccCC-hhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccC
Q 045210          773 FFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIP-SQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSS  851 (873)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  851 (873)
                                             .+.+++++|+++ .+| ..+.++++|++|+|++|+++..-+..|.+++.|+.+++++
T Consensus       179 -----------------------~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         179 -----------------------DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             -----------------------EEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             -----------------------hccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence                                   244567788887 455 4578889999999999998844444567777777666644

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=1.8e-16  Score=152.25  Aligned_cols=178  Identities=24%  Similarity=0.199  Sum_probs=143.3

Q ss_pred             CCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcC
Q 045210          569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLG  648 (873)
Q Consensus       569 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  648 (873)
                      .++++.++++++......++++++|++++|++++.++...   |.++++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~---f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGL---FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCS---GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccc---cCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3567777777775444467789999999999987554432   4458999999999999999999999999999999999


Q ss_pred             CCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210          649 ENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF  728 (873)
Q Consensus       649 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  728 (873)
                      +|++.+..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+....+....  ...++.+.+..+.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeC
Confidence            9999988888999999999999999999999899999999999999999999855443322  23456667777887777


Q ss_pred             CCcccCCCCCCCEEeCCCCccccccC
Q 045210          729 FPPELCGLASLKILDLSSNNLTGVIP  754 (873)
Q Consensus       729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip  754 (873)
                      .|..   +..++.+||+.|.++..-+
T Consensus       165 ~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         165 APSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             SSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             CChh---hcCCEeeecCHhhCcCCCC
Confidence            6754   4556778899998875433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.5e-15  Score=147.97  Aligned_cols=79  Identities=25%  Similarity=0.323  Sum_probs=36.9

Q ss_pred             hcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCC
Q 045210          268 VLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK  347 (873)
Q Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  347 (873)
                      +..+++++.+++++|.+++.  ..+..+++|+++++++|.+++. + .++++++|++|++++|+++ .++ .+..+++|+
T Consensus       130 l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~  203 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLD  203 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCS
T ss_pred             cccccccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCC
Confidence            33444444444444444321  2234445555555555555432 2 1445555555555555554 233 355555555


Q ss_pred             EEeCC
Q 045210          348 SLDLS  352 (873)
Q Consensus       348 ~L~L~  352 (873)
                      +|+++
T Consensus       204 ~L~Ls  208 (210)
T d1h6ta2         204 VLELF  208 (210)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            55543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=3.4e-16  Score=150.31  Aligned_cols=132  Identities=23%  Similarity=0.267  Sum_probs=98.8

Q ss_pred             CceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCC-cccccCCCCccEEEccCCcccccCCcccccCCCCcEEEcc
Q 045210          618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNL-PTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS  696 (873)
Q Consensus       618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  696 (873)
                      .+.++.++++++ .+|..+.  +++++|+|++|++++.+ +..|.++++|+.|++++|++.+..+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            467888888887 5665543  57888888888887544 4566778888888888888887777888888888888888


Q ss_pred             CCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCcccccc
Q 045210          697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVI  753 (873)
Q Consensus       697 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  753 (873)
                      +|++. .+|...+.++++|++|+|++|++++..|+.|..+++|++|+|++|++.+..
T Consensus        87 ~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          87 ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            88887 444444445888888888888888777777778888888888888776443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5.4e-15  Score=142.68  Aligned_cols=163  Identities=26%  Similarity=0.383  Sum_probs=95.7

Q ss_pred             cCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210          118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS  197 (873)
Q Consensus       118 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~  197 (873)
                      ..++++++|++++|.++..   +.++.+++|++|++++|.+++..|  ++++++|++|++++|.+..++.     +.+  
T Consensus        37 ~~l~~l~~L~l~~~~i~~l---~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-----l~~--  104 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-----LAN--  104 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-----GTT--
T ss_pred             HHhcCCCEEECCCCCCCCc---cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc-----ccc--
Confidence            3456666677766666542   235566666666666666655332  6666666666666665544432     344  


Q ss_pred             CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEE
Q 045210          198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL  277 (873)
Q Consensus       198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  277 (873)
                                              +++|+.|++++|.+...  ..+.++++|+.|++++|.+..   .+.+..+++|++|
T Consensus       105 ------------------------l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L  155 (199)
T d2omxa2         105 ------------------------LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQL  155 (199)
T ss_dssp             ------------------------CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEE
T ss_pred             ------------------------ccccccccccccccccc--cccchhhhhHHhhhhhhhhcc---ccccccccccccc
Confidence                                    44455555554444433  235556666666666666542   2245666677777


Q ss_pred             EccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEE
Q 045210          278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYL  325 (873)
Q Consensus       278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  325 (873)
                      ++.+|++++. + .+.++++|++|++++|++++ ++ .++.+++|++|
T Consensus       156 ~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         156 NFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            7777766643 2 36677777777777777664 33 46677777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5.7e-15  Score=142.52  Aligned_cols=180  Identities=26%  Similarity=0.381  Sum_probs=128.3

Q ss_pred             CCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEE
Q 045210          123 LIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHL  202 (873)
Q Consensus       123 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L  202 (873)
                      .....++.+.+++. +  ....+.++++|++++|.+...  +.++.+++|++|++++|+++.++                
T Consensus        20 ~i~~~l~~~~~~~~-~--~~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~----------------   78 (199)
T d2omxa2          20 KMKTVLGKTNVTDT-V--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT----------------   78 (199)
T ss_dssp             HHHHHTTCSSTTSE-E--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG----------------
T ss_pred             HHHHHhCCCCCCCc-c--CHHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc----------------
Confidence            33445555555542 1  123456666666666665432  23455555555555555544332                


Q ss_pred             eCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCC
Q 045210          203 DLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTN  282 (873)
Q Consensus       203 ~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  282 (873)
                                     .+..+++|++|++++|.+..+.  .+++++.|+.|+++++....   ...+..+++|+.|++++|
T Consensus        79 ---------------~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2          79 ---------------PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             ---------------GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCSS
T ss_pred             ---------------cccCCccccccccccccccccc--cccccccccccccccccccc---ccccchhhhhHHhhhhhh
Confidence                           1456667777777777766553  48899999999999998863   235788999999999999


Q ss_pred             cCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEE
Q 045210          283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSL  349 (873)
Q Consensus       283 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  349 (873)
                      ++.. + +.+..+++|++|++.+|.+++. + .++++++|++|++++|++++ ++ .++.+++|++|
T Consensus       139 ~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         139 TISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            9874 3 3588999999999999999854 3 48899999999999999985 44 58899999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=153.14  Aligned_cols=217  Identities=16%  Similarity=0.112  Sum_probs=144.8

Q ss_pred             ceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccC-CcccccCCCCcEEEccC
Q 045210          619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI-PVSLQNCTELRLFDISE  697 (873)
Q Consensus       619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~  697 (873)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+...+ +..|..++.++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56667776666 5665443  46788888888887544456778888888888888776544 44677788888877654


Q ss_pred             -CeecccCChhHHhhcccCcEEEccCCeeeeeCCc-ccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210          698 -NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPP-ELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE  775 (873)
Q Consensus       698 -n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~  775 (873)
                       |.+....+..+ .++++|+.+++++|.+....+. .+..++.+..+..+++.+...-+..+..+               
T Consensus        88 ~n~l~~~~~~~~-~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~---------------  151 (242)
T d1xwdc1          88 ANNLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL---------------  151 (242)
T ss_dssp             CTTCCEECTTSE-ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS---------------
T ss_pred             cccccccccccc-cccccccccccchhhhcccccccccccccccccccccccccccccccccccc---------------
Confidence             45553333333 3477888888888777643221 23344555555556666653333333222               


Q ss_pred             hheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCee-eCCCCcCcccCCccccCCCCCCeEeccCCcc
Q 045210          776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTL-KLSHNFFSGRIPVNMGAMKSVEALDFSSNRL  854 (873)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L-~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  854 (873)
                                       ...++.|++++|+++ .++....+.+.++.+ ++++|.++..-+..|.++++|+.||+++|++
T Consensus       152 -----------------~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         152 -----------------SFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             -----------------BSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC
T ss_pred             -----------------cccceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcC
Confidence                             234588999999999 466666666666655 5677888843344588999999999999999


Q ss_pred             ccccccccccCCCCCccc
Q 045210          855 QGEIPKNMVNLEFLEIFN  872 (873)
Q Consensus       855 ~g~iP~~l~~l~~L~~l~  872 (873)
                      +..-+..+.++..|++++
T Consensus       214 ~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         214 HSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             CCCCSSSCTTCCEEESSS
T ss_pred             CccCHHHHcCCcccccCc
Confidence            954445688888888776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-15  Score=156.03  Aligned_cols=160  Identities=21%  Similarity=0.219  Sum_probs=102.9

Q ss_pred             ccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCC-CCCCCchhHhhcCCCCCcEEEccCCc-CCCC-Chhhhc-C
Q 045210          219 TNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDN-QFADSSIVNQVLGLVNLVFLDLSTNN-FQGA-VPDAIQ-N  294 (873)
Q Consensus       219 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~-~  294 (873)
                      +..+++|++|++++|.+++..+..++.+++|++|+++++ .+++..+......+++|++|++++|. +++. +...+. .
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            455666666666666666655666777777888888775 45533444445667788888887763 3321 222232 3


Q ss_pred             CCCCCEEECCCCC--CCCC-CchhhhcCCCcCEEEccCC-cCCccCcccccCCCCCCEEeCCCC-cCCCcchhhhhcCCC
Q 045210          295 STSLQHLDLSRNH--FSSS-VPDWFNKFIDLEYLSLSYN-ELQGSIPGSLGNLTSIKSLDLSFN-RLESKIPRAFKRLRH  369 (873)
Q Consensus       295 l~~L~~L~l~~n~--l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~  369 (873)
                      +++|+.|+++++.  ++.. +.....++++|++|++++| .+++..+..++.+++|++|++++| .+++.....++.+++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            4678888887653  3321 2233456788888888775 366666667777888888888875 566555566777777


Q ss_pred             CCEEEccCC
Q 045210          370 LRSVNLSGN  378 (873)
Q Consensus       370 L~~L~L~~n  378 (873)
                      |+.|++.++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            777777776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.9e-15  Score=151.01  Aligned_cols=157  Identities=23%  Similarity=0.225  Sum_probs=83.4

Q ss_pred             CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCc-CccC-CcccccCCCC
Q 045210          588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEND-FTGN-LPTSLGTLSS  665 (873)
Q Consensus       588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~-~p~~l~~l~~  665 (873)
                      .+|++|++++|.++...   +...+..+++|++|++++|.+++..+..+..+++|++|++++|. +++. +......+++
T Consensus        46 ~~L~~LdLs~~~i~~~~---l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          46 FRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             BCCCEEECTTCEECHHH---HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCCEEECCCCccCHHH---HHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            35555666655554322   22224457777777777777766666667777777777777753 3321 1122345667


Q ss_pred             ccEEEccCCc-cccc-CCcccc-cCCCCcEEEccCCe--ecccCChhHHhhcccCcEEEccCCe-eeeeCCcccCCCCCC
Q 045210          666 LQILHLRGNR-FSGK-IPVSLQ-NCTELRLFDISENE--FVGNIPTWIGERLSGIILLSLRANQ-FHGFFPPELCGLASL  739 (873)
Q Consensus       666 L~~L~L~~n~-l~~~-~p~~l~-~l~~L~~L~Ls~n~--l~~~ip~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L  739 (873)
                      |++|++++|. ++.. +...+. .++.|+.|+++++.  +++.....+..++++|++|++++|. +++..+..+..+++|
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            7777777653 3211 112222 24567777776542  2222122233335666666666543 444444555555666


Q ss_pred             CEEeCCCC
Q 045210          740 KILDLSSN  747 (873)
Q Consensus       740 ~~L~Ls~N  747 (873)
                      ++|++++|
T Consensus       203 ~~L~L~~C  210 (284)
T d2astb2         203 QHLSLSRC  210 (284)
T ss_dssp             CEEECTTC
T ss_pred             CEEECCCC
Confidence            66666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=3.7e-14  Score=150.00  Aligned_cols=191  Identities=21%  Similarity=0.287  Sum_probs=92.4

Q ss_pred             CCCCCccEEEcCCCCCCCCc---hhHhhcCCCCCcEEEccCCcCCCCChh-------------hhcCCCCCCEEECCCCC
Q 045210          244 ANFSSLVTLDISDNQFADSS---IVNQVLGLVNLVFLDLSTNNFQGAVPD-------------AIQNSTSLQHLDLSRNH  307 (873)
Q Consensus       244 ~~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~l~~n~  307 (873)
                      ..+++|+.|++++|.+++..   +...+..+++|++|++++|.+......             .....+.|+.+++++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            34455555555555554221   222334455566666655554311000             11234556666666665


Q ss_pred             CCCC----CchhhhcCCCcCEEEccCCcCCcc-----CcccccCCCCCCEEeCCCCcCCCc----chhhhhcCCCCCEEE
Q 045210          308 FSSS----VPDWFNKFIDLEYLSLSYNELQGS-----IPGSLGNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVN  374 (873)
Q Consensus       308 l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~  374 (873)
                      +...    +...+...+.|++|++++|.++..     +...+..+++|++|++++|.++..    +...+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            5422    222344556666666666655421     223344556666666666655422    233445556666666


Q ss_pred             ccCCcCcchhhHHHH-HhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcc----cccccc-CCCCCC
Q 045210          375 LSGNKLSQEISQVLD-MFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH----IPLSLG-QLSSLR  448 (873)
Q Consensus       375 L~~n~l~~~~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~  448 (873)
                      +++|.+++.....+. .+...                        ..+.|++|++++|+++..    +...+. ++++|+
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~------------------------~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~  305 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKL------------------------ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  305 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTC------------------------SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             hhcCccCchhhHHHHHHhhhc------------------------cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCC
Confidence            666665544332221 11111                        124566666666665532    122222 456677


Q ss_pred             EEEccCccCC
Q 045210          449 YLDVSTNNLN  458 (873)
Q Consensus       449 ~L~L~~n~l~  458 (873)
                      +|++++|++.
T Consensus       306 ~L~l~~N~~~  315 (344)
T d2ca6a1         306 FLELNGNRFS  315 (344)
T ss_dssp             EEECTTSBSC
T ss_pred             EEECCCCcCC
Confidence            7777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=4.1e-14  Score=149.65  Aligned_cols=191  Identities=24%  Similarity=0.303  Sum_probs=114.1

Q ss_pred             hcCCCCCCEEECCCCCCCCC----CchhhhcCCCcCEEEccCCcCCccCcc-------------cccCCCCCCEEeCCCC
Q 045210          292 IQNSTSLQHLDLSRNHFSSS----VPDWFNKFIDLEYLSLSYNELQGSIPG-------------SLGNLTSIKSLDLSFN  354 (873)
Q Consensus       292 l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n  354 (873)
                      +..+++|++|++++|.+...    +...+...++|++|++++|.+......             .....+.|+.+.+++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            34455555555555555432    222333455566666655554311100             1124566777777777


Q ss_pred             cCCCc----chhhhhcCCCCCEEEccCCcCcchhhHH-H-HHhhhcccccccEEEccCcccCCc----cccccCCCCCCC
Q 045210          355 RLESK----IPRAFKRLRHLRSVNLSGNKLSQEISQV-L-DMFSACASNVLESLDLSNNTLFGL----LTNQIGNFKNLD  424 (873)
Q Consensus       355 ~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~-~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~  424 (873)
                      .++..    +...+...+.|+.|++++|.+....... . ..+..+  ++|+.|++++|.++..    +...+..+++|+
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~--~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC--QELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC--TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcch--hhhcccccccccccccccccccccccccccch
Confidence            66532    2334566777888888887776543221 1 112222  3388888888876542    334567889999


Q ss_pred             EEeCCCCccCccccc----ccc--CCCCCCEEEccCccCCccc----ChhhhhcccccceEEcCCCeeec
Q 045210          425 SLDLSFNNISGHIPL----SLG--QLSSLRYLDVSTNNLNGTL----SENHFANLTKLVGFDASGNSLVL  484 (873)
Q Consensus       425 ~L~L~~n~l~~~~~~----~l~--~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~~~~  484 (873)
                      +|++++|.+++....    .+.  ..+.|++|++++|++...-    ......+++.|+.+++++|.+..
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            999999998854332    333  3467999999999986432    22111367899999999998753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4e-13  Score=123.78  Aligned_cols=66  Identities=18%  Similarity=0.209  Sum_probs=33.8

Q ss_pred             cCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCC
Q 045210          220 NSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ  285 (873)
Q Consensus       220 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  285 (873)
                      ..+++|++|++++|+++.+.+..+..+++|++|++++|.+.+......+..+++|++|++++|.++
T Consensus        60 ~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          60 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccc
Confidence            344555555555555555545445556666666666666542222233444555555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.4e-13  Score=116.14  Aligned_cols=103  Identities=26%  Similarity=0.303  Sum_probs=72.4

Q ss_pred             cEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCcc
Q 045210          716 ILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYY  795 (873)
Q Consensus       716 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (873)
                      |.|++++|+++ .++ .+..++.|++||+++|+++ .+|+.++.+++|                                
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L--------------------------------   45 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCL--------------------------------   45 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcc--------------------------------
Confidence            45667777766 333 4677777778888888776 566666665554                                


Q ss_pred             ceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC-CccccCCCCCCeEeccCCcccc
Q 045210          796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI-PVNMGAMKSVEALDFSSNRLQG  856 (873)
Q Consensus       796 L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g  856 (873)
                       +.|++++|++++ +| .++++++|++|++++|++++.. +..++.+++|+.+++++|++++
T Consensus        46 -~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          46 -EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             -CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             -cccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence             678888888773 44 4778888888888888887432 2457777888888888888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.3e-12  Score=114.22  Aligned_cols=102  Identities=24%  Similarity=0.220  Sum_probs=67.3

Q ss_pred             CeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEe
Q 045210          124 IHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLD  203 (873)
Q Consensus       124 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~  203 (873)
                      |+|||++|+++.  ++ .++.+++|++|++++|.++. +|..++.+++|++|++++|.++.++.     +.++++|++|+
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l~~-----~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCGG-----GTTCSSCCEEE
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccccCc-----cccccccCeEE
Confidence            678888888874  34 37788888888888888764 56678888888888888888776642     45666666666


Q ss_pred             CCCCCCCCCCCccccccCCCCCCEEEccCCCC
Q 045210          204 LSGVDLSKTSDGPLITNSLHSLETLRFSGCLL  235 (873)
Q Consensus       204 L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l  235 (873)
                      +++|.++..+.. ..+..+++|++|++++|++
T Consensus        72 l~~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          72 LCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSCCCSSSTT-GGGGGCTTCCEEECTTSGG
T ss_pred             CCCCccCCCCCc-hhhcCCCCCCEEECCCCcC
Confidence            666666555431 2233444444444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=120.09  Aligned_cols=126  Identities=21%  Similarity=0.167  Sum_probs=63.9

Q ss_pred             CCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCE
Q 045210          245 NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEY  324 (873)
Q Consensus       245 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  324 (873)
                      ++.++++|+|++|+++  .++.....+++|++|++++|.++. + +.+..+++|++|++++|.++...+..+..+++|++
T Consensus        16 n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            4444455555555443  223333444555555555555542 2 23455555666666666555433334455666666


Q ss_pred             EEccCCcCCccC-cccccCCCCCCEEeCCCCcCCCcc---hhhhhcCCCCCEEE
Q 045210          325 LSLSYNELQGSI-PGSLGNLTSIKSLDLSFNRLESKI---PRAFKRLRHLRSVN  374 (873)
Q Consensus       325 L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~  374 (873)
                      |++++|+++... ...+..+++|++|++++|.++...   +..+..+++|+.|+
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666655321 124555666666666666554321   23456666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=6.5e-13  Score=127.00  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=37.5

Q ss_pred             CCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccc
Q 045210          680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT  750 (873)
Q Consensus       680 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  750 (873)
                      ++..+..+++|++|++++|+++ .++. +. .+++|+.|++++|+++ .+|.....+++|+.|++++|+++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~~-l~-~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KISS-LS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCCC-HH-HHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             hhhHHhcccccceeECcccCCC-Cccc-cc-CCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            4455666666666666666665 4442 33 2666666666666655 33333333445566666666555

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=1.5e-12  Score=124.32  Aligned_cols=129  Identities=22%  Similarity=0.202  Sum_probs=78.5

Q ss_pred             CceEeccCCc-ccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEcc
Q 045210          618 LQVLNLGNNT-LSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS  696 (873)
Q Consensus       618 L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  696 (873)
                      .+.+++.+.. -...+|..+..+++|++|++++|+++. ++ .+..+++|+.|++++|+++ .+|.....+++|++|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccc
Confidence            4455554431 112344567777777777777777763 33 4667777777777777776 445444455567777777


Q ss_pred             CCeecccCChhHHhhcccCcEEEccCCeeeeeCC-cccCCCCCCCEEeCCCCccccc
Q 045210          697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGFFP-PELCGLASLKILDLSSNNLTGV  752 (873)
Q Consensus       697 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~  752 (873)
                      +|+++ .++ .+. .+++|+.|++++|+++.... ..+..+++|+.|++++|+++..
T Consensus       102 ~N~i~-~l~-~~~-~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         102 YNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccc-ccc-ccc-ccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            77776 333 233 26777777777777654321 3456667777777777766533

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.6e-10  Score=102.13  Aligned_cols=110  Identities=19%  Similarity=0.088  Sum_probs=66.7

Q ss_pred             CCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCC-cCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210          119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRA-GFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS  197 (873)
Q Consensus       119 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~  197 (873)
                      .+.....++.+++++..  .|..+..+++|++|+++++ .++...+.+|.++++|+.|++++|+|+.++...        
T Consensus         6 ~c~~~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~--------   75 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA--------   75 (156)
T ss_dssp             CCSSSSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG--------
T ss_pred             CcCCCCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccc--------
Confidence            34445567777766654  5666777777777777655 366555566777777777777777776665442        


Q ss_pred             CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCC
Q 045210          198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFA  260 (873)
Q Consensus       198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  260 (873)
                                           +..+++|++|++++|+++.+.+..|... +|+.|+|++|.+.
T Consensus        76 ---------------------f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          76 ---------------------FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             ---------------------GGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ---------------------ccccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence                                 2334444444444555554444444433 4667777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.1e-10  Score=103.23  Aligned_cols=105  Identities=17%  Similarity=0.062  Sum_probs=50.2

Q ss_pred             ceEeccCCcccCCCChhhhccccCcEEEcCCCc-CccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210          619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEND-FTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE  697 (873)
Q Consensus       619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  697 (873)
                      +.++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+++...+.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34444444444 234444444455555554332 4433333444444555555555544444444444444444444444


Q ss_pred             CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccc
Q 045210          698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT  750 (873)
Q Consensus       698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  750 (873)
                      |+++ .+|.                         ......+|+.|+|++|++.
T Consensus        90 N~l~-~l~~-------------------------~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALE-SLSW-------------------------KTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCS-CCCS-------------------------TTTCSCCCCEEECCSSCCC
T ss_pred             CCCc-ccCh-------------------------hhhccccccccccCCCccc
Confidence            4444 3333                         3233335777777777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=8.3e-08  Score=87.49  Aligned_cols=78  Identities=22%  Similarity=0.148  Sum_probs=43.6

Q ss_pred             cceEEECCCCccccc--CChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccc-------cccC
Q 045210          795 YLKVLDLSANYFSGE--IPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKN-------MVNL  865 (873)
Q Consensus       795 ~L~~L~ls~n~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-------l~~l  865 (873)
                      .|+.||||+|+++..  ++..+..+++|+.|+|++|.++..-+-.......|+.+++++|++.+..+..       +..+
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~  145 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF  145 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHC
Confidence            346667777766632  2344566667777777777766432212223345666777777766544322       4455


Q ss_pred             CCCCccc
Q 045210          866 EFLEIFN  872 (873)
Q Consensus       866 ~~L~~l~  872 (873)
                      +.|++||
T Consensus       146 P~L~~LD  152 (162)
T d1koha1         146 PKLLRLD  152 (162)
T ss_dssp             TTCCEET
T ss_pred             CCCCEEC
Confidence            6666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.2e-07  Score=86.42  Aligned_cols=65  Identities=20%  Similarity=0.195  Sum_probs=28.8

Q ss_pred             CCCCccEEEccCCcccccC--CcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeee
Q 045210          662 TLSSLQILHLRGNRFSGKI--PVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHG  727 (873)
Q Consensus       662 ~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~  727 (873)
                      .+++|++|++++|+++...  +..+..+++|+.|++++|.++ .++....-....|+.|++++|++.+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCc
Confidence            3455555555555554321  223344555555555555554 2332111113344555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.67  E-value=1.2e-05  Score=72.98  Aligned_cols=112  Identities=19%  Similarity=0.142  Sum_probs=59.5

Q ss_pred             CCCcEEEccCc-cCcCcchhhhhhhcccCCCCceEeccCCcccCC----CChhhhccccCcEEEcCCCcCccC----Ccc
Q 045210          588 SSLTTLDLSSN-FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE----IPDCWMNWSFLFFLHLGENDFTGN----LPT  658 (873)
Q Consensus       588 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~p~  658 (873)
                      ++|++|+++++ .++...-..++..+...++|++|++++|.+...    +...+...+.|++|++++|.++..    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            44555555543 344333344555566667777777777766532    223344556667777777666532    122


Q ss_pred             cccCCCCccEEEccCCccccc-------CCcccccCCCCcEEEccCCe
Q 045210          659 SLGTLSSLQILHLRGNRFSGK-------IPVSLQNCTELRLFDISENE  699 (873)
Q Consensus       659 ~l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~Ls~n~  699 (873)
                      .+...++|++|++++|+....       +...+...++|+.|+++.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            344556666666666643311       22333445556666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.62  E-value=7.2e-05  Score=67.72  Aligned_cols=89  Identities=19%  Similarity=0.127  Sum_probs=46.2

Q ss_pred             hhcCCCCCCEEECCCCCCCC----CCchhhhcCCCcCEEEccCCcCCcc----CcccccCCCCCCEEeCCCCcCCCc---
Q 045210          291 AIQNSTSLQHLDLSRNHFSS----SVPDWFNKFIDLEYLSLSYNELQGS----IPGSLGNLTSIKSLDLSFNRLESK---  359 (873)
Q Consensus       291 ~l~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~---  359 (873)
                      .+...+.|++|++++|.+..    .+...+...+.|++|++++|.++..    +...+...+.|++|++++|.+...   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            34444555555555555432    1223344455566666666655532    222344556667777766654321   


Q ss_pred             ----chhhhhcCCCCCEEEccCCc
Q 045210          360 ----IPRAFKRLRHLRSVNLSGNK  379 (873)
Q Consensus       360 ----~~~~l~~l~~L~~L~L~~n~  379 (873)
                          +...+...++|+.|+++.+.
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCC
Confidence                33445556667777666553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=0.00011  Score=66.57  Aligned_cols=112  Identities=14%  Similarity=0.158  Sum_probs=58.5

Q ss_pred             CCCcEEEccC-ccCcCcchhhhhhhcccCCCCceEeccCCcccCCC----ChhhhccccCcEEEcCCCcCccC----Ccc
Q 045210          588 SSLTTLDLSS-NFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEI----PDCWMNWSFLFFLHLGENDFTGN----LPT  658 (873)
Q Consensus       588 ~~L~~L~l~~-n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~l~~n~l~~~----~p~  658 (873)
                      ++|++|++++ +.++...-..++..+...++|++|++++|.++...    -..+...++++.+++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            3455555554 33444444445555666677777777777665321    22344456666666666665532    123


Q ss_pred             cccCCCCccEEEcc--CCcccc----cCCcccccCCCCcEEEccCCe
Q 045210          659 SLGTLSSLQILHLR--GNRFSG----KIPVSLQNCTELRLFDISENE  699 (873)
Q Consensus       659 ~l~~l~~L~~L~L~--~n~l~~----~~p~~l~~l~~L~~L~Ls~n~  699 (873)
                      .+...++|+.++|+  +|++..    .+...+..++.|+.|+++.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            44455666654443  344432    222334455666666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.98  E-value=0.00053  Score=61.73  Aligned_cols=92  Identities=16%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             hhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCc----cccccCCCCCCCEEeC--CCCccCc--
Q 045210          364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGL----LTNQIGNFKNLDSLDL--SFNNISG--  435 (873)
Q Consensus       364 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~--  435 (873)
                      +...++|++|++++|.++......+...-... +.++.+++++|.+...    +...+...+.|+.++|  ++|.+..  
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~-~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhc-ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            33445555555555555444333222111111 1255555555554332    2233445566665444  3444442  


Q ss_pred             --cccccccCCCCCCEEEccCcc
Q 045210          436 --HIPLSLGQLSSLRYLDVSTNN  456 (873)
Q Consensus       436 --~~~~~l~~l~~L~~L~L~~n~  456 (873)
                        .+...+...+.|++|++..+.
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHhCCCcCEEeCcCCC
Confidence              233344456666666665543