Citrus Sinensis ID: 045216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MVKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVLIHFYFLDQIINYI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHccccccHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHccHHHcccccHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccEEEEEccccccHHHHcccHHHHEHccHHHHHHHcc
Coil and Loop (DISEMBL)
MVKKSISLEasirpwedrpghfgdiwMYWTDDGLGYFEFLKEALDSIEfarsdpnstwgsvraamghpdpfdlrYVAIgnedcgkknysGLHAVLIHFYFLDQIINYI
Flexible Loop (DISEMBL)
mvkksisleasirpwedrpghFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVLIHFYFLDQIINYI
Low Complexity Region (SEG)
MVKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVLIHFYFLDQIINYI
Disordered region (IsUnstruct)
*************PWEDRPGHFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVLIHFYFLDQIINY*
Disordered Region (DISOPRED)
MVKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVLIHFYFLDQIINYI
Disordered Region (DISEMBL)
MVKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVLIHFYFLDQIINYI
Disordered Region (DISPRO)
MVKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVLIHFYFLDQIINYI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVLIHFYFLDQIINYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q8VZR2	674	Alpha-L-arabinofuranosida	yes	no	0.759	0.121	0.504	2e-28
Q9SG80	678	Alpha-L-arabinofuranosida	no	no	0.787	0.125	0.508	5e-28
P82593	825	Alpha-N-arabinofuranosida	N/A	no	0.731	0.095	0.290	2e-07
Q0CTV2	628	Probable alpha-N-arabinof	N/A	no	0.657	0.113	0.293	5e-07
Q2U790	629	Probable alpha-N-arabinof	no	no	0.657	0.112	0.293	7e-06
B8NKA3	629	Probable alpha-N-arabinof	N/A	no	0.657	0.112	0.293	7e-06
P42254	628	Alpha-N-arabinofuranosida	no	no	0.601	0.103	0.281	0.0003
A2Q7E0	628	Probable alpha-N-arabinof	no	no	0.601	0.103	0.281	0.0003
Q8NK90	628	Alpha-N-arabinofuranosida	N/A	no	0.601	0.103	0.281	0.0003
Q96X54	628	Probable alpha-N-arabinof	N/A	no	0.601	0.103	0.281	0.0003

>sp|Q8VZR2|ASD2_ARATH Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 72/115 (62%), Gaps = 33/115 (28%)

Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEF----------------------------- 39
           + ++R WE+RPGH+GD+W YWTDDGLG+FEF                             
Sbjct: 282 KETVRAWEERPGHYGDVWKYWTDDGLGHFEFFQLAEDLGASPIWVFNNGISHNDQVETKN 341

Query: 40  ----LKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSG 90
               ++EA+D IEFAR D NSTWGSVRAAMGHP+PF+L+YVA+GNEDC K  Y G
Sbjct: 342 VMPFVQEAIDGIEFARGDSNSTWGSVRAAMGHPEPFELKYVAVGNEDCFKSYYRG 396

May be involved in the coordinated dissolution of the cell wall matrix during abscission and in the secondary cell wall formation in xylem vessels.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 71/118 (60%), Gaps = 33/118 (27%)

Query: 11  SIRPWEDRPGHFGDIWMYWTDDGLGYFEF------------------------------- 39
           ++ PWE+RPGHFGD+W YWTDDGLG+FEF                               
Sbjct: 285 TVGPWEERPGHFGDVWKYWTDDGLGHFEFFQMAEDIGAAPIWVFNNGISHNDEVETASIM 344

Query: 40  --LKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVL 95
             ++EALD IEFAR D NSTWGSVRA MG  +PF+L+YVAIGNEDCGK  Y G + V 
Sbjct: 345 PFVQEALDGIEFARGDANSTWGSVRAKMGRQEPFELKYVAIGNEDCGKTYYRGNYIVF 402

May be involved in the coordinated dissolution of the cell wall matrix during abscission and in the secondary cell wall formation in xylem vessels. Prefers arabinoxylan, but may also use pectic arabinans as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P82593|ABF1_STRCX Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 38/117 (32%)

Query: 3   KKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEF----------------------- 39
           K+S   + ++ P E+R  +  + W Y    GLGY+E+                       
Sbjct: 266 KRSYQWKDTVGPVEERATN-ANFWGYNQSYGLGYYEYFRFSEDIGAMPLPVVPALVTGCG 324

Query: 40  --------------LKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
                         +++ LD IEFA     S WG VRA MGHP PF L ++ +GNE+
Sbjct: 325 QNKAVDDEALLKRHIQDTLDLIEFANGPATSKWGKVRAEMGHPRPFRLTHLEVGNEE 381

Streptomyces chartreusis (taxid: 1969)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|Q0CTV2|ABFA_ASPTN Probable alpha-N-arabinofuranosidase A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=abfA PE=3 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 38/109 (34%)

Query: 11  SIRPWEDRPGHFGDIWMYWTDDGLGYFEFL------------------------------ 40
           +I P E+RPGH G  W Y+  DGLG  E+L                              
Sbjct: 262 TIGPLENRPGHQG-TWGYFNTDGLGLDEYLYWCEDMNLTPVLGVWAGFALESGGNTPITG 320

Query: 41  -------KEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
                  ++ L+ +E+   DP++T+G +RA+ G  +P+++  V IGNED
Sbjct: 321 DALTPYIEDVLNELEYVLGDPSTTYGKLRASYGREEPWNVTLVEIGNED 369

Alpha-N-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Acts only on small linear 1,5-alpha-linked L-arabinofuranosyl oligosaccharides.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|Q2U790|ABFA_ASPOR Probable alpha-N-arabinofuranosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=abfA PE=3 SV=2

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 38/109 (34%)

Query: 11  SIRPWEDRPGHFGDIWMYWTDDGLG---YF------------------------------ 37
           +I P E+RPG  GD W Y+  DGLG   YF                              
Sbjct: 262 TIGPVENRPGRQGD-WSYYNTDGLGLDEYFYWCEDMGLTPVLGVWAGFALESGGNTPITG 320

Query: 38  ----EFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
                ++ + L+ +E+   D ++ +GS+RA+ G  +P+ L  V IGNED
Sbjct: 321 DALKPYIDDVLNELEYVLGDASTKYGSLRASYGRKEPWKLTMVEIGNED 369

Alpha-N-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Acts only on small linear 1,5-alpha-linked L-arabinofuranosyl oligosaccharides.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|B8NKA3|ABFA_ASPFN Probable alpha-N-arabinofuranosidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=abfA PE=3 SV=2

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 38/109 (34%)

Query: 11  SIRPWEDRPGHFGDIWMYWTDDGLG---YF------------------------------ 37
           +I P E+RPG  GD W Y+  DGLG   YF                              
Sbjct: 262 TIGPVENRPGRQGD-WSYYNTDGLGLDEYFYWCEDMGLTPVLGVWAGFALESGGNTPITG 320

Query: 38  ----EFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
                ++ + L+ +E+   D ++ +GS+RA+ G  +P+ L  V IGNED
Sbjct: 321 DALKPYIDDVLNELEYVLGDASTKYGSLRASYGRKEPWKLTMVEIGNED 369

Alpha-N-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Acts only on small linear 1,5-alpha-linked L-arabinofuranosyl oligosaccharides.

Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) (taxid: 332952)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|P42254|ABFA_ASPNG Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 38/103 (36%)

Query: 17  DRPGHFGDIWMYWTDDGLGYFEF------------------------------------- 39
           DRPG  G  W Y+  DGLG  E+                                     
Sbjct: 268 DRPGREG-TWTYYNTDGLGLHEYFYWCEDLGLVPVLGVWDGFALESGGNTPLTGDALTPY 326

Query: 40  LKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
           + + L+ +E+   D ++T+G+ RAA G  +P++L  V IGNED
Sbjct: 327 IDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTMVEIGNED 369

Acts only on small linear 1,5-alpha-linked L-arabinofuranosyl oligosaccharides.

Aspergillus niger (taxid: 5061)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|A2Q7E0|ABFA_ASPNC Probable alpha-N-arabinofuranosidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=abfA PE=3 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 38/103 (36%)

Query: 17  DRPGHFGDIWMYWTDDGLGYFEF------------------------------------- 39
           DRPG  G  W Y+  DGLG  E+                                     
Sbjct: 268 DRPGREG-TWTYYNTDGLGLHEYFYWCEDLGLVPVLGVWDGFALESGGNTPLTGDALTPY 326

Query: 40  LKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
           + + L+ +E+   D ++T+G+ RAA G  +P++L  V IGNED
Sbjct: 327 IDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTMVEIGNED 369

Alpha-N-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Acts only on small linear 1,5-alpha-linked L-arabinofuranosyl oligosaccharides.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|Q8NK90|ABFA_ASPKW Alpha-N-arabinofuranosidase A OS=Aspergillus kawachii (strain NBRC 4308) GN=abfA PE=1 SV=2

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 38/103 (36%)

Query: 17  DRPGHFGDIWMYWTDDGLGYFEF------------------------------------- 39
           DRPG  G  W Y+  DGLG  E+                                     
Sbjct: 268 DRPGREG-TWTYYNTDGLGLHEYFYWCEDLGLVPVLGVWDGFALESGGNTPITGDALTPY 326

Query: 40  LKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
           + + L+ +E+   D ++T+G+ RAA G  +P++L  V IGNED
Sbjct: 327 IDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTMVEIGNED 369

Alpha-N-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Acts only on small linear 1,5-alpha-linked L-arabinofuranosyl oligosaccharides.

Aspergillus kawachii (strain NBRC 4308) (taxid: 1033177)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|Q96X54|ABFA_ASPAW Probable alpha-N-arabinofuranosidase A OS=Aspergillus awamori GN=abfA PE=1 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 38/103 (36%)

Query: 17  DRPGHFGDIWMYWTDDGLGYFEF------------------------------------- 39
           DRPG  G  W Y+  DGLG  E+                                     
Sbjct: 268 DRPGREG-TWTYYNTDGLGLHEYFYWCEDLGLVPVLGVWDGFALESGGNTPITGDALTPY 326

Query: 40  LKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
           + + L+ +E+   D ++T+G+ RAA G  +P++L  V IGNED
Sbjct: 327 IDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTMVEIGNED 369

Alpha-N-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Acts only on small linear 1,5-alpha-linked L-arabinofuranosyl oligosaccharides.

Aspergillus awamori (taxid: 105351)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
356571858	676	PREDICTED: alpha-L-arabinofuranosidase 1	0.824	0.131	0.549	3e-34
346703313	624	hypothetical_protein [Oryza glaberrima]	0.824	0.142	0.685	4e-34
119507455	675	alpha-Arabinosidase1 [Pyrus communis]	0.740	0.118	0.610	4e-33
33151175	675	alpha-L-arabinofuranosidase [Malus x dom	0.740	0.118	0.610	5e-33
356504623	676	PREDICTED: alpha-L-arabinofuranosidase 1	0.824	0.131	0.532	8e-33
222628517	794	hypothetical protein OsJ_14094 [Oryza sa	0.824	0.112	0.640	1e-32
116739148	677	alpha-L-arabinofuranosidase [Prunus pers	0.740	0.118	0.592	3e-32
255565362	678	Alpha-N-arabinofuranosidase 1 precursor,	0.759	0.120	0.591	3e-32
37777015	674	alpha-L-arabinofuranosidase [Pyrus pyrif	0.740	0.118	0.601	3e-32
357509145	672	Alpha-L-arabinofuranosidase [Medicago tr	0.824	0.132	0.508	5e-32

>gi|356571858|ref|XP_003554088.1| PREDICTED: alpha-L-arabinofuranosidase 1-like [Glycine max]

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 78/122 (63%), Gaps = 33/122 (27%)

Query: 2   VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK-------------------- 41
           ++ +   + SI PWE+RPGHFGD+WMYWTDDGLGY+EFL+                    
Sbjct: 274 LRNAFRWKTSIGPWEERPGHFGDVWMYWTDDGLGYYEFLQLAEDLGASPIWVFNNGVSHN 333

Query: 42  -------------EALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNY 88
                        EALD IEFAR DP S WGS+RAAMGHP+PFDLRYVA+GNEDCGKKNY
Sbjct: 334 DQVDTSAVLPLVQEALDGIEFARGDPTSKWGSLRAAMGHPEPFDLRYVAVGNEDCGKKNY 393

Query: 89  SG 90
            G
Sbjct: 394 RG 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346703313|emb|CBX25410.1| hypothetical_protein [Oryza glaberrima]

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/89 (68%), Positives = 74/89 (83%)

Query: 2   VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSV 61
           ++ +     SI PWE+RPGHFGD+W YWTDDGLGY+EFL++ LDS+EFAR   +STWGSV
Sbjct: 269 LRNAFRWRESIGPWEERPGHFGDVWHYWTDDGLGYYEFLQDVLDSLEFARGSADSTWGSV 328

Query: 62  RAAMGHPDPFDLRYVAIGNEDCGKKNYSG 90
           RAAMGHP+PF ++YVAIGNEDCGKK Y G
Sbjct: 329 RAAMGHPEPFPVKYVAIGNEDCGKKFYRG 357

Source: Oryza glaberrima

Species: Oryza glaberrima

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119507455|dbj|BAF42035.1| alpha-Arabinosidase1 [Pyrus communis]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 75/113 (66%), Gaps = 33/113 (29%)

Query: 11  SIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK----------------------------- 41
           +I PWE+RPGHFGD+WMYWTDDGLGYFEFL+                             
Sbjct: 281 TIGPWEERPGHFGDVWMYWTDDGLGYFEFLQLSEDLGSLPIWVFNNGISHNDQVDTSSVL 340

Query: 42  ----EALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSG 90
               EALD IEFAR  PNSTWGS+RAAMGHP+PFDLRYVAIGNEDCGKKNY G
Sbjct: 341 PFVQEALDGIEFARGSPNSTWGSLRAAMGHPEPFDLRYVAIGNEDCGKKNYRG 393

Source: Pyrus communis

Species: Pyrus communis

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33151175|gb|AAP97437.1| alpha-L-arabinofuranosidase [Malus x domestica]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 75/113 (66%), Gaps = 33/113 (29%)

Query: 11  SIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK----------------------------- 41
           +I PWE+RPGHFGD+WMYWTDDGLGYFEFL+                             
Sbjct: 281 TIGPWEERPGHFGDVWMYWTDDGLGYFEFLQLSEDLGSLPIWVFNNGISHNDQVDTSSVL 340

Query: 42  ----EALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSG 90
               EALD IEFAR  PNSTWGS+RAAMGHP+PFDLRYVAIGNEDCGKKNY G
Sbjct: 341 PFVQEALDGIEFARGSPNSTWGSLRAAMGHPEPFDLRYVAIGNEDCGKKNYRG 393

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504623|ref|XP_003521095.1| PREDICTED: alpha-L-arabinofuranosidase 1-like [Glycine max]

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 65/122 (53%), Positives = 77/122 (63%), Gaps = 33/122 (27%)

Query: 2   VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK-------------------- 41
           ++ +   +AS+ PWE+RPGHFGD+WMYWTDDGLGY+EFL+                    
Sbjct: 274 LRNAFRWKASVGPWEERPGHFGDVWMYWTDDGLGYYEFLQLAEDLGTAPIWVFNNGVSHN 333

Query: 42  -------------EALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNY 88
                        EALD +EFAR D  S WGS+RAAMGHP PFDLRYVA+GNEDCGKKNY
Sbjct: 334 DQVDTSAVLPLVQEALDGLEFARGDRTSKWGSLRAAMGHPAPFDLRYVAVGNEDCGKKNY 393

Query: 89  SG 90
            G
Sbjct: 394 RG 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222628517|gb|EEE60649.1| hypothetical protein OsJ_14094 [Oryza sativa Japonica Group]

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 71/89 (79%)

Query: 2   VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSV 61
           ++ +     S+ PWE+RPGHFGD+W YWTDDGLGY+EFL++ LDS+EFAR   NSTWGS+
Sbjct: 439 LRNAFRWRESVGPWEERPGHFGDVWGYWTDDGLGYYEFLQDILDSLEFARGSTNSTWGSL 498

Query: 62  RAAMGHPDPFDLRYVAIGNEDCGKKNYSG 90
           R AMGHP+PF ++YV IGNEDC KK Y G
Sbjct: 499 RVAMGHPEPFPVKYVTIGNEDCTKKFYHG 527

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116739148|gb|ABF22680.3| alpha-L-arabinofuranosidase [Prunus persica]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 75/113 (66%), Gaps = 33/113 (29%)

Query: 11  SIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK----------------------------- 41
           +I PWE+RPGHFGD+WMYWTDDG+GYFEFL+                             
Sbjct: 281 TIGPWEERPGHFGDVWMYWTDDGIGYFEFLQLAEDLGTLPIWVFNNGISHTDQVDTSSVL 340

Query: 42  ----EALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSG 90
               EALD +EFAR  PNSTWGS+RAAMGHP+PFDLRYVAIGNEDCGKKNY G
Sbjct: 341 PFVQEALDGLEFARGSPNSTWGSLRAAMGHPEPFDLRYVAIGNEDCGKKNYLG 393

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565362|ref|XP_002523672.1| Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] gi|223537072|gb|EEF38707.1| Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 75/115 (65%), Gaps = 33/115 (28%)

Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK--------------------------- 41
           + +I PWE+RPGHFGD+WMYWTDDGLGYFEFL+                           
Sbjct: 283 KETIGPWEERPGHFGDVWMYWTDDGLGYFEFLQLSEDLGASPIWVFNNGISHNDQVDTTS 342

Query: 42  ------EALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSG 90
                 EALD IEFAR D NS WGSVRAAMGHP+PFDLRYVA+GNEDCGKKNY G
Sbjct: 343 ILPFVQEALDGIEFARGDSNSKWGSVRAAMGHPEPFDLRYVAVGNEDCGKKNYRG 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37777015|dbj|BAC99303.1| alpha-L-arabinofuranosidase [Pyrus pyrifolia]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 74/113 (65%), Gaps = 33/113 (29%)

Query: 11  SIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK----------------------------- 41
           +I PWE+RPGHFGD+W YWTDDGLGYFEFL+                             
Sbjct: 281 TIGPWEERPGHFGDVWKYWTDDGLGYFEFLQLSEDLGSLPIWVFNNGISHNDQVDTSSVL 340

Query: 42  ----EALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSG 90
               EALD IEFAR  PNSTWGS+RAAMGHP+PFDLRYVAIGNEDCGKKNY G
Sbjct: 341 PFVQEALDGIEFARGSPNSTWGSLRAAMGHPEPFDLRYVAIGNEDCGKKNYRG 393

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509145|ref|XP_003624861.1| Alpha-L-arabinofuranosidase [Medicago truncatula] gi|296882314|gb|ADH83380.1| alpha-L-arabinofuranosidase [Medicago truncatula] gi|355499876|gb|AES81079.1| Alpha-L-arabinofuranosidase [Medicago truncatula]

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/122 (50%), Positives = 78/122 (63%), Gaps = 33/122 (27%)

Query: 2   VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK-------------------- 41
           ++ +   +A++ PWE+RPGHFGD+W YWTDDGLGY+EFL+                    
Sbjct: 270 LRNAFRWKAAVGPWEERPGHFGDVWKYWTDDGLGYYEFLQLSEDLGALPIWVFNNGVSHN 329

Query: 42  -------------EALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNY 88
                        EALD +EFAR DP S WGS+RAAMGHP+PF+L+YVA+GNEDCGKKNY
Sbjct: 330 DEVDTSAVLPFVQEALDGLEFARGDPTSKWGSMRAAMGHPEPFNLKYVAVGNEDCGKKNY 389

Query: 89  SG 90
            G
Sbjct: 390 RG 391

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2180652	674	ASD2 "alpha-L-arabinofuranosid	0.537	0.086	0.655	9.6e-31
TAIR|locus:2103172	678	ASD1 "alpha-L-arabinofuranosid	0.518	0.082	0.696	2.7e-30
UNIPROTKB|G4N0I3	646	MGG_05809 "Alpha-N-arabinofura	0.407	0.068	0.454	6.1e-11
UNIPROTKB|Q0CTV2	628	abfA "Probable alpha-N-arabino	0.407	0.070	0.363	1.6e-10
UNIPROTKB|G4NBZ0	667	MGG_01147 "Alpha-N-arabinofura	0.407	0.065	0.613	1.7e-09
UNIPROTKB|B8NKA3	629	abfA "Probable alpha-N-arabino	0.407	0.069	0.363	4.8e-09
UNIPROTKB|Q2U790	629	abfA "Probable alpha-N-arabino	0.407	0.069	0.363	4.8e-09
UNIPROTKB|A2Q7E0	628	abfA "Probable alpha-N-arabino	0.407	0.070	0.386	3.1e-08
UNIPROTKB|Q8NK90	628	abfA "Alpha-N-arabinofuranosid	0.407	0.070	0.386	3.1e-08
UNIPROTKB|Q96X54	628	abfA "Probable alpha-N-arabino	0.407	0.070	0.386	3.1e-08

TAIR|locus:2180652 ASD2 "alpha-L-arabinofuranosidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 9.6e-31, Sum P(2) = 9.6e-31
 Identities = 40/61 (65%), Positives = 49/61 (80%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAVLIHF 98
             F++EA+D IEFAR D NSTWGSVRAAMGHP+PF+L+YVA+GNEDC K  Y G +   + F
Sbjct:   345 FVQEAIDGIEFARGDSNSTWGSVRAAMGHPEPFELKYVAVGNEDCFKSYYRGNY---LEF 401

Query:    99 Y 99
             Y
Sbjct:   402 Y 402

GO:0005576 "extracellular region" evidence=ISM

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS

GO:0046373 "L-arabinose metabolic process" evidence=IEA

GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=IEA

TAIR|locus:2103172 ASD1 "alpha-L-arabinofuranosidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
 Identities = 39/56 (69%), Positives = 45/56 (80%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHAV 94
             F++EALD IEFAR D NSTWGSVRA MG  +PF+L+YVAIGNEDCGK  Y G + V
Sbjct:   346 FVQEALDGIEFARGDANSTWGSVRAKMGRQEPFELKYVAIGNEDCGKTYYRGNYIV 401

GO:0005576 "extracellular region" evidence=ISM

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS

GO:0046373 "L-arabinose metabolic process" evidence=IEA

GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=IEA;IDA

GO:0009044 "xylan 1,4-beta-xylosidase activity" evidence=IDA

GO:0045493 "xylan catabolic process" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|G4N0I3 MGG_05809 "Alpha-N-arabinofuranosidase A" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 120 (47.3 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
 Identities = 20/44 (45%), Positives = 34/44 (77%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
             F+++AL+ IEF   D ++ +G+ RAA+G+P+P+ + +V IGNED
Sbjct:   320 FIQDALNQIEFLTGDASTEYGAKRAALGYPNPWKINFVGIGNED 363

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0CTV2 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus terreus NIH2624 (taxid:341663)]

 Score = 104 (41.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 16/44 (36%), Positives = 32/44 (72%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
             ++++ L+ +E+   DP++T+G +RA+ G  +P+++  V IGNED
Sbjct:   326 YIEDVLNELEYVLGDPSTTYGKLRASYGREEPWNVTLVEIGNED 369

GO:0005576 "extracellular region" evidence=ISS

GO:0019566 "arabinose metabolic process" evidence=ISS

GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=ISS

UNIPROTKB|G4NBZ0 MGG_01147 "Alpha-N-arabinofuranosidase A" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 149 (57.5 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 27/44 (61%), Positives = 32/44 (72%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
             F+ +ALD IEF R   +STWG  RA +GHP+PF L YV IGNED
Sbjct:   322 FIDDALDLIEFTRGPADSTWGKRRAELGHPEPFKLEYVEIGNED 365

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B8NKA3 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus flavus NRRL3357 (taxid:332952)]

 Score = 93 (37.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
             ++ + L+ +E+   D ++ +GS+RA+ G  +P+ L  V IGNED
Sbjct:   326 YIDDVLNELEYVLGDASTKYGSLRASYGRKEPWKLTMVEIGNED 369

GO:0005576 "extracellular region" evidence=ISS

GO:0019566 "arabinose metabolic process" evidence=ISS

GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=ISS

UNIPROTKB|Q2U790 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus oryzae RIB40 (taxid:510516)]

 Score = 93 (37.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
             ++ + L+ +E+   D ++ +GS+RA+ G  +P+ L  V IGNED
Sbjct:   326 YIDDVLNELEYVLGDASTKYGSLRASYGRKEPWKLTMVEIGNED 369

GO:0005576 "extracellular region" evidence=ISS

GO:0019566 "arabinose metabolic process" evidence=ISS

GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=ISS

UNIPROTKB|A2Q7E0 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus niger CBS 513.88 (taxid:425011)]

 Score = 95 (38.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
             ++ + L+ +E+   D ++T+G+ RAA G  +P++L  V IGNED
Sbjct:   326 YIDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTMVEIGNED 369

GO:0005576 "extracellular region" evidence=ISS

GO:0019566 "arabinose metabolic process" evidence=ISS

GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=ISS

UNIPROTKB|Q8NK90 abfA "Alpha-N-arabinofuranosidase A" [Aspergillus kawachii IFO 4308 (taxid:1033177)]

 Score = 95 (38.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
             ++ + L+ +E+   D ++T+G+ RAA G  +P++L  V IGNED
Sbjct:   326 YIDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTMVEIGNED 369

GO:0005576 "extracellular region" evidence=IDA

GO:0019566 "arabinose metabolic process" evidence=IDA

GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=IDA

UNIPROTKB|Q96X54 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus awamori (taxid:105351)]

 Score = 95 (38.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query:    39 FLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED 82
             ++ + L+ +E+   D ++T+G+ RAA G  +P++L  V IGNED
Sbjct:   326 YIDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTMVEIGNED 369

GO:0005576 "extracellular region" evidence=ISS

GO:0019566 "arabinose metabolic process" evidence=ISS

GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVI.1041.1	hypothetical protein (662 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.III.271.1	hypothetical protein (854 aa)			•						0.458
	estExt_fgenesh4_pg.C_LG_I0347	hypothetical protein (858 aa)			•						0.455
	fgenesh4_pg.C_LG_XIV000628	hypothetical protein (140 aa)			•						0.425

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	108
COG3534	501	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carboh	2e-08

>gnl|CDD|226064 COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 26/104 (25%)

Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEF---------------------LKEALDSI 47
           E  I P E+RP      W     +  G  EF                     + EA + +
Sbjct: 80  EDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLGSRGVDEARNWV 139

Query: 48  EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNE-----DCGKK 86
           E+      + W  +R   G  +P++++Y  +GNE      CG K
Sbjct: 140 EYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHK 183

Length = 501

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
COG3534	501	AbfA Alpha-L-arabinofuranosidase [Carbohydrate tra	100.0
PF03662	319	Glyco_hydro_79n: Glycosyl hydrolase family 79, N-t	84.92

>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.7e-37  Score=259.66  Aligned_cols=84  Identities=26%  Similarity=0.532  Sum_probs=82.0

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCcccccCCCCChHHHH---------------------HHHHHHHHHhcCCCCChHHH
Q 045216            2 VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSIEFARSDPNSTWGS   60 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~~~tn~fG~~Efl---------------------qda~d~vEY~ng~~~t~wg~   60 (108)
                      |+|.|||+|||||+|+||.++|++|++.|||+|||+|||                     |+|.+||||||+|.+|+|++
T Consensus        73 Fvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~Gsrgvd~ar~~vEY~n~pggtywsd  152 (501)
T COG3534          73 FVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLGSRGVDEARNWVEYCNHPGGTYWSD  152 (501)
T ss_pred             cccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecCCccHHHHHHHHHHccCCCCChhHH
Confidence            899999999999999999999999999999999999999                     99999999999999999999


Q ss_pred             HHHHcCCCCCcccceEEeccCCCCh
Q 045216           61 VRAAMGHPDPFDLRYVAIGNEDCGK   85 (108)
Q Consensus        61 ~Ra~~Ghp~P~~vky~eIGNE~~g~   85 (108)
                      +|++|||++||+|||||||||+||+
T Consensus       153 lR~~~G~~~P~nvK~w~lGNEm~Gp  177 (501)
T COG3534         153 LRRENGREEPWNVKYWGLGNEMDGP  177 (501)
T ss_pred             HHHhcCCCCCcccceEEeccccCCC
Confidence            9999999999999999999999654

>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3

Probab=84.92  E-value=0.26  Score=40.75  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=13.4

Q ss_pred             CCCCCcccceEEeccCCCCh--------hhHHHHHHHHh
Q 045216           66 GHPDPFDLRYVAIGNEDCGK--------KNYSGLHAVLI   96 (108)
Q Consensus        66 Ghp~P~~vky~eIGNE~~g~--------~~Y~~ry~~f~   96 (108)
                      -..+.|+|+.||+|||..|.        ..|++.|.++.
T Consensus       159 t~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr  197 (319)
T PF03662_consen  159 TASKGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQLR  197 (319)
T ss_dssp             EESS-GGG--------HHHHSSSTT--HHHHHHHH---H
T ss_pred             HHHcCCCccccccccccCCCCCCCccCHHHHHHHHHHHH
Confidence            45788999999999999863        67776665443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
3s2c_A	484	Structure Of The Thermostable Gh51 Alpha-L-Arabinof		4e-04
2y2w_A	574	Elucidation Of The Substrate Specificity And Protei		4e-04
4atw_A	482	The Crystal Structure Of Arabinofuranosidase Length		4e-04
3ug3_A	504	Crystal Structure Of Alpha-L-Arabinofuranosidase Fr		4e-04

>pdb|3S2C|A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 Length = 484

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEF---------------------LKEALDSI 47
           E  I P + RP  F   W     +  G  EF                     L EAL  +
Sbjct: 79  EDGIGPKDQRPVRFDLAWQQEETNRFGTDEFIEYCREIGAEPYISINMGTGTLDEALHWL 138
Query: 48  EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGK 85
           E+     N+ +  +R   GHP+P+++++  IGNE  G+
Sbjct: 139 EYCNGKGNTYYAQLRRKYGHPEPYNVKFWGIGNEMYGE 176

>pdb|2Y2W|A Chain A, Elucidation Of The Substrate Specificity And Protein Structure Of Abfb, A Family 51 Alpha-L-Arabinofuranosidase From Bifidobacterium Longum. Length = 574

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 40  LKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNE 81
           LK ALD +E+    P + W   R A G  +P D++   IGNE
Sbjct: 174 LKAALDELEYVNGAPGTAWADQRVANGIEEPMDIKMWCIGNE 215

>pdb|4ATW|A Chain A, The Crystal Structure Of Arabinofuranosidase Length = 482

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEF---------------------LKEALDSI 47
           E  I P + RP  F   W     +  G  EF                     L EAL  +
Sbjct: 79  EDGIGPKDQRPVRFDLAWQQEETNRFGTDEFIEYCREIGAEPYISINMGTGTLDEALHWL 138
Query: 48  EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGK 85
           E+     N+ +  +R   GHP+P+++++  IGNE  G+
Sbjct: 139 EYCNGKGNTYYAQLRRKYGHPEPYNVKFWGIGNEMYGE 176

>pdb|3UG3|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From Thermotoga Maritima Ligand Free Form Length = 504

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEF---------------------LKEALDSI 47
           E  I P + RP  F   W     +  G  EF                     L EAL  +
Sbjct: 99  EDGIGPKDQRPVRFDLAWQQEETNRFGTDEFIEYCREIGAEPYISINMGTGTLDEALHWL 158
Query: 48  EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGK 85
           E+     N+ +  +R   GHP+P+++++  IGNE  G+
Sbjct: 159 EYCNGKGNTYYAQLRRKYGHPEPYNVKFWGIGNEMYGE 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
3ug3_A	504	Alpha-L-arabinofuranosidase; TIM barrel, hydrolase	9e-17
2c7f_A	513	Alpha-L-arabinofuranosidase; glycosidase, xylan, a	5e-16
2y2w_A	574	Arabinofuranosidase; hydrolase, arabinoxylan, glyc	4e-15
1qw9_A	502	Arabinosidase, alpha-L-arabinofuranosidase; hydrol	7e-15
2vrq_A	496	Alpha-L-arabinofuranosidase; hydrolase, glycosidas	4e-13

>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Length = 504

 Score = 73.4 bits (179), Expect = 9e-17
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 21/106 (19%)

Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSI 47
           E  I P + RP  F   W     +  G  EF+                      EAL  +
Sbjct: 99  EDGIGPKDQRPVRFDLAWQQEETNRFGTDEFIEYCREIGAEPYISINMGTGTLDEALHWL 158

Query: 48  EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHA 93
           E+     N+ +  +R   GHP+P+++++  IGNE  G+     + A
Sbjct: 159 EYCNGKGNTYYAQLRRKYGHPEPYNVKFWGIGNEMYGEWQVGHMTA 204

>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Length = 513

 Score = 71.1 bits (173), Expect = 5e-16
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 21/106 (19%)

Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK---------------------EALDSI 47
           E  + P EDRP      W     + +G  EF K                     +A + +
Sbjct: 90  EDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLL 149

Query: 48  EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHA 93
           E+      S +  +R   G  +P +++   +GN   G         
Sbjct: 150 EYCNHPGGSKYSDMRIKHGVKEPHNIKVWCLGNAMDGPWQVGHKTM 195

>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Length = 574

 Score = 68.5 bits (166), Expect = 4e-15
 Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 21/106 (19%)

Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSI 47
           E  I P E+RP      W     + +G  +F                      K ALD +
Sbjct: 122 EDGIGPRENRPMRRDLAWHCTETNEMGIDDFYRWSQKAGTEIMLAVNMGTRGLKAALDEL 181

Query: 48  EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHA 93
           E+    P + W   R A G  +P D++   IGNE  G      +  
Sbjct: 182 EYVNGAPGTAWADQRVANGIEEPMDIKMWCIGNEMDGPWQVGHMSP 227

>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Length = 502

 Score = 67.6 bits (164), Expect = 7e-15
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 21/106 (19%)

Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSI 47
           E  + P E RP      W     + +G  EF+                       A + +
Sbjct: 82  EDGVGPKEQRPRRLDLAWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLV 141

Query: 48  EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGKKNYSGLHA 93
           E+      S +  +R A G+ +P  ++   +GN   G        A
Sbjct: 142 EYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMDGPWQIGHKTA 187

>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Length = 496

 Score = 62.6 bits (151), Expect = 4e-13
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 22/98 (22%)

Query: 9   EASIRPWEDRPGHFGDIW-MYWTDDGLGYFEFL---------------------KEALDS 46
           +  + P E R       W     ++  G  EF+                     +E  + 
Sbjct: 82  KDGVGPREKRKRMVNTHWGGVIENNHFGTHEFMMLCELLGCEPYISGNVGSGTVQEMSEW 141

Query: 47  IEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCG 84
           +E+   D  S   + R   G   P+ ++Y  +GN++ G
Sbjct: 142 VEYITFDGESPMANWRRENGREKPWRIKYWGVGNQNWG 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
3ug3_A	504	Alpha-L-arabinofuranosidase; TIM barrel, hydrolase	100.0
2vrq_A	496	Alpha-L-arabinofuranosidase; hydrolase, glycosidas	100.0
2y2w_A	574	Arabinofuranosidase; hydrolase, arabinoxylan, glyc	100.0
2c7f_A	513	Alpha-L-arabinofuranosidase; glycosidase, xylan, a	100.0
1qw9_A	502	Arabinosidase, alpha-L-arabinofuranosidase; hydrol	100.0
2yih_A	524	CEL44C, xyloglucanase; hydrolase, GH44, endo-gluca	99.72
2e4t_A	519	Endoglucanase, xyloglucanase; TIM barrel, TIM-like	99.7
3vny_A	488	Beta-glucuronidase; TIM barrel, greek-KEY, glycosi	99.52
3ik2_A	517	Endoglucanase A; TIM-like barrel, hydrolase; 2.20A	97.77
3ii1_A	535	Cellulase; CELM2, glucanase-xyanase, glucanase, xy	97.62
1w91_A	503	Beta-xylosidase; MAD, seMet, tetramer, hydrolase;	94.93

>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A

Probab=100.00  E-value=7.2e-38  Score=264.00  Aligned_cols=104  Identities=26%  Similarity=0.481  Sum_probs=97.2

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCcccccCCCCChHHHH---------------------HHHHHHHHHhcCCCCChHHH
Q 045216            2 VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSIEFARSDPNSTWGS   60 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~~~tn~fG~~Efl---------------------qda~d~vEY~ng~~~t~wg~   60 (108)
                      |++.|+|+|||||+++||++.|.+|++.++|+||++|||                     |||+|||||||++.+|+||+
T Consensus        92 ~~~~y~W~d~iGP~~~Rp~~~~~~W~~~~~n~fG~~Ef~~~~e~~gaep~~~vN~G~g~~~ea~d~veY~n~~~~t~~~~  171 (504)
T 3ug3_A           92 FVSNYHWEDGIGPKDQRPVRFDLAWQQEETNRFGTDEFIEYCREIGAEPYISINMGTGTLDEALHWLEYCNGKGNTYYAQ  171 (504)
T ss_dssp             GGGGCCGGGGCSSGGGSCCEEETTTTEEECCCSCHHHHHHHHHHHTCEEEEECCCSSCCHHHHHHHHHHHHCCSSCHHHH
T ss_pred             ccCcchhccCcCChHHCCCCcccCcccccCCCCCHHHHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHhcCCCCChHHH
Confidence            688999999999999999999999999999999999999                     99999999999999999999


Q ss_pred             HHHHcCCCCCcccceEEeccCCCCh--------hhHHHHHHHHhhh----ccCCccc
Q 045216           61 VRAAMGHPDPFDLRYVAIGNEDCGK--------KNYSGLHAVLIHF----YFLDQII  105 (108)
Q Consensus        61 ~Ra~~Ghp~P~~vky~eIGNE~~g~--------~~Y~~ry~~f~~~----~~~~~~~  105 (108)
                      |||+||||+||+|||||||||+||+        ++|.++|++|+++    +|+-+||
T Consensus       172 lRa~~G~~~P~~vkyweiGNE~~G~~q~G~~t~e~Y~~~~~~~a~Aik~~dP~I~li  228 (504)
T 3ug3_A          172 LRRKYGHPEPYNVKFWGIGNEMYGEWQVGHMTADEYARAAKEYTKWMKVFDPTIKAI  228 (504)
T ss_dssp             HHHHTTCCSCCCCCEEEECSSTTSTTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHcCCCCCCCccEEEecCcccccccccCCCHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence            9999999999999999999999975        5799999999854    7776665

>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A

Probab=100.00  E-value=8e-37  Score=254.17  Aligned_cols=97  Identities=21%  Similarity=0.409  Sum_probs=90.5

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCccc-ccCCCCChHHHH---------------------HHHHHHHHHhcCCCCChHH
Q 045216            2 VKKSISLEASIRPWEDRPGHFGDIWMY-WTDDGLGYFEFL---------------------KEALDSIEFARSDPNSTWG   59 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~-~~tn~fG~~Efl---------------------qda~d~vEY~ng~~~t~wg   59 (108)
                      |++.|+|+|+|||+++||++.|.+|++ .++|+||++|||                     |||+|||||||+|.+|+||
T Consensus        75 ~~~~y~W~d~iGP~~~Rp~~~~~~W~~~~e~n~fG~~Ef~~~~~~~gaep~~~vn~g~g~~~ea~d~veY~n~~~~t~w~  154 (496)
T 2vrq_A           75 FADEYHWKDGVGPREKRKRMVNTHWGGVIENNHFGTHEFMMLCELLGCEPYISGNVGSGTVQEMSEWVEYITFDGESPMA  154 (496)
T ss_dssp             GGGTCCGGGGCSCGGGCCCCEETTTTSEECCCCSCHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHCCSBSHHH
T ss_pred             cccceeecCCcCChHHCCCccCCCCCcccccCccCHHHHHHHHHHcCCeEEEEEECCCCcHHHHHHHHHHhCCCCCChHH
Confidence            688999999999999999999989985 799999999998                     9999999999999999999


Q ss_pred             HHHHHcCCCCCcccceEEeccCCCCh------hhHHHHHHHHhhh
Q 045216           60 SVRAAMGHPDPFDLRYVAIGNEDCGK------KNYSGLHAVLIHF   98 (108)
Q Consensus        60 ~~Ra~~Ghp~P~~vky~eIGNE~~g~------~~Y~~ry~~f~~~   98 (108)
                      +|||+||||+||+|||||||||+||+      ++|.++|++|++.
T Consensus       155 ~lRa~~G~~eP~~vkyweiGNE~~g~~g~~~~~~Y~~~~~~~a~a  199 (496)
T 2vrq_A          155 NWRRENGREKPWRIKYWGVGNQNWGCGGNMRAEYYADLYRQFQTY  199 (496)
T ss_dssp             HHHHHTTCCSCCCCCEEEECSCTTTTTTCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCceEEEEcCcccccCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999984      6898877777643

>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum}

Probab=100.00  E-value=5.1e-34  Score=242.81  Aligned_cols=104  Identities=28%  Similarity=0.484  Sum_probs=96.7

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCcccccCCCCChHHHH---------------------HHHHHHHHHhcCCCCChHHH
Q 045216            2 VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSIEFARSDPNSTWGS   60 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~~~tn~fG~~Efl---------------------qda~d~vEY~ng~~~t~wg~   60 (108)
                      |++.|+|+++|||+++||++++..|++.++|+||+||||                     |||+|||||||++.+|+||+
T Consensus       115 f~d~Y~W~d~iGP~e~Rp~~~~~~W~~~e~n~fG~dEf~~~~~~~GaeP~i~vn~G~~~~~ea~dwveY~n~~~~t~w~~  194 (574)
T 2y2w_A          115 FVSNYNWEDGIGPRENRPMRRDLAWHCTETNEMGIDDFYRWSQKAGTEIMLAVNMGTRGLKAALDELEYVNGAPGTAWAD  194 (574)
T ss_dssp             GGGGCCGGGGSSCGGGSCCEEETTTTEEECCCSCHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHCCTTSHHHH
T ss_pred             ccCcceecCCcCChhhCCCccccCccccccCCcCHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHHHHHHhCCCCCChHHH
Confidence            678999999999999999999999999999999999999                     99999999999999999999


Q ss_pred             HHHHcCCCCCcccceEEeccCCCCh--------hhHHHHHHHHhhh----ccCCccc
Q 045216           61 VRAAMGHPDPFDLRYVAIGNEDCGK--------KNYSGLHAVLIHF----YFLDQII  105 (108)
Q Consensus        61 ~Ra~~Ghp~P~~vky~eIGNE~~g~--------~~Y~~ry~~f~~~----~~~~~~~  105 (108)
                      ||++||||+||+|+|||||||+||+        ++|.++|++|++.    +|+-+||
T Consensus       195 lR~~~G~~ep~~vkyweIGNE~~g~W~~G~~t~e~Y~~~~~~~a~AiK~vdP~i~vi  251 (574)
T 2y2w_A          195 QRVANGIEEPMDIKMWCIGNEMDGPWQVGHMSPEEYAGAVDKVAHAMKLAESGLELV  251 (574)
T ss_dssp             HHHHTTCCSCCCCCEEEESSCTTSTTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHcCCCCCcceeEEEeccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            9999999999999999999999975        5899999998854    6766665

>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A

Probab=100.00  E-value=1.6e-33  Score=234.23  Aligned_cols=104  Identities=19%  Similarity=0.334  Sum_probs=96.3

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCcccccCCCCChHHHH---------------------HHHHHHHHHhcCCCCChHHH
Q 045216            2 VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSIEFARSDPNSTWGS   60 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~~~tn~fG~~Efl---------------------qda~d~vEY~ng~~~t~wg~   60 (108)
                      |++.|+|+++|||.++||++.+.+|++.++|+||++|||                     |||+|||||||++.+|+||+
T Consensus        83 f~d~y~W~d~iGp~~~Rp~~~~~~W~~~~~n~~G~def~~~~~~~G~ep~~~vn~g~~~~~~a~~~vey~n~~~~t~~~~  162 (513)
T 2c7f_A           83 FVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSD  162 (513)
T ss_dssp             TGGGCCGGGGSSCGGGCCCEEETTTTEEECCSSCTHHHHHHHHHTTCEEEEECCCSSCCHHHHHHHHHHHHCCSSSHHHH
T ss_pred             ccCcceecCCCCChHhCCccccCCccceecCCCCHHHHHHHHHHcCCeEEEEEeCCCCCHHHHHHHHHHhCCCCCChHHH
Confidence            688999999999999999999999999999999999998                     99999999999999999999


Q ss_pred             HHHHcCCCCCcccceEEeccCCCCh--------hhHHHHHHHHhhh----ccCCccc
Q 045216           61 VRAAMGHPDPFDLRYVAIGNEDCGK--------KNYSGLHAVLIHF----YFLDQII  105 (108)
Q Consensus        61 ~Ra~~Ghp~P~~vky~eIGNE~~g~--------~~Y~~ry~~f~~~----~~~~~~~  105 (108)
                      ||+++||++||+|||||||||+||+        ++|.++|++|++.    +|+-+||
T Consensus       163 lR~~~G~~ep~~vkyweiGNE~~g~w~~g~~t~~~Y~~~~~~~a~a~k~~dP~i~vi  219 (513)
T 2c7f_A          163 MRIKHGVKEPHNIKVWCLGNAMDGPWQVGHKTMDEYGRIAEETARAMKMIDPSIELV  219 (513)
T ss_dssp             HHHHTTCCSCCCCCEEEESCCCCCTTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHcCCCCCCCceEEEeccCcccccccCCCCHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence            9999999999999999999999974        5799999888754    6766665

>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A

Probab=100.00  E-value=3.1e-33  Score=231.37  Aligned_cols=104  Identities=19%  Similarity=0.345  Sum_probs=96.3

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCcccccCCCCChHHHH---------------------HHHHHHHHHhcCCCCChHHH
Q 045216            2 VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSIEFARSDPNSTWGS   60 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~~~tn~fG~~Efl---------------------qda~d~vEY~ng~~~t~wg~   60 (108)
                      |++.|+|+++|||.++||++.+.+|++.++|+||+|||+                     |||++||||||++.+|+||+
T Consensus        75 f~d~y~W~d~igp~~~Rp~~~~~~W~~~~~n~~g~def~~~~~~~g~ep~~~vn~g~~~~~~a~~~vey~n~~~~t~~~~  154 (502)
T 1qw9_A           75 FVSGYNWEDGVGPKEQRPRRLDLAWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSD  154 (502)
T ss_dssp             GGGGCCGGGGSSCGGGCCCEEETTTTEEECCSSCHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHCCSSSHHHH
T ss_pred             ccCcccccCCCCChHhCCCcccCCccccccCCCCHHHHHHHHHHcCCeEEEEEeCCCCCHHHHHHHHHHhCCCCCCcHHH
Confidence            678999999999999999999989999999999999998                     99999999999999999999


Q ss_pred             HHHHcCCCCCcccceEEeccCCCCh--------hhHHHHHHHHhhh----ccCCccc
Q 045216           61 VRAAMGHPDPFDLRYVAIGNEDCGK--------KNYSGLHAVLIHF----YFLDQII  105 (108)
Q Consensus        61 ~Ra~~Ghp~P~~vky~eIGNE~~g~--------~~Y~~ry~~f~~~----~~~~~~~  105 (108)
                      ||+++||++||+|+|||||||++|+        ++|.++|++|++.    +|+-+||
T Consensus       155 lR~~~G~~ep~~v~yweiGNE~~g~w~~g~~t~~~Y~~~~~~~a~aik~~dP~i~vi  211 (502)
T 1qw9_A          155 LRIAHGYKEPHKIKTWCLGNAMDGPWQIGHKTAVEYGRIACEAAKVMKWVDPTIELV  211 (502)
T ss_dssp             HHHHTTCCSCCCCCEEEESSCCCSTTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHcCCCCCCCCeEEEEeCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            9999999999999999999999974        5799999988754    6766665

>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase, carbohydrate-binding protei; HET: BGC; 1.70A {Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A*

Probab=99.72  E-value=1.8e-19  Score=151.78  Aligned_cols=90  Identities=14%  Similarity=0.083  Sum_probs=74.8

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCcccccCC----------------CCChHHHH-------------------------
Q 045216            2 VKKSISLEASIRPWEDRPGHFGDIWMYWTDD----------------GLGYFEFL-------------------------   40 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~~~tn----------------~fG~~Efl-------------------------   40 (108)
                      |++.|+|+|+|||++       ++|...++|                ++|++||+                         
T Consensus        49 ~~s~YnWed~~gp~~-------~aW~~~~~n~~~~~~~i~~~~~~~p~~~~~ef~~~~~~~g~e~m~~vnl~~~v~~~~~  121 (524)
T 2yih_A           49 RMTGYNWENNMSNAG-------SDWQHSSDNYLCSNGGLTQAECEKPGAVVTSFHDQSLKLGTYSLVTLPMAGYVAADGN  121 (524)
T ss_dssp             HHHTCCTTTCCEECG-------GGTTTEEESHHHHHTTCCHHHHTSTTHHHHHHHHHHHHHTCEEEEEECCSSEEECCCC
T ss_pred             cccccCcccCCCCcc-------cccccccccccccccccccccccccchhHHHHHHHHHHcCCeEEEEEecCcccccccC
Confidence            678999999999985       579888777                99999999                         


Q ss_pred             ---HHH-----HHHHHHhcCC-----------CCCh-----HHHHHHHcCCC-CCcccceEEeccCCCC-----------
Q 045216           41 ---KEA-----LDSIEFARSD-----------PNST-----WGSVRAAMGHP-DPFDLRYVAIGNEDCG-----------   84 (108)
Q Consensus        41 ---qda-----~d~vEY~ng~-----------~~t~-----wg~~Ra~~Ghp-~P~~vky~eIGNE~~g-----------   84 (108)
                         +|+     .+|+||||++           .+|.     +..||+++||+ +||+|||||||||++|           
T Consensus       122 ~~~~e~~~~~~~~w~e~~n~~~~~~~~~p~~~~g~~~~~~~~~~lr~~~G~~~~p~gVk~W~LgNE~dgWq~gh~~~~p~  201 (524)
T 2yih_A          122 GSVQESEAAPSARWNQVVNAKNAPFQLQPDLNDNYVYVDEFVHFLVNKYGTASTKAGVKGYALDNEPALWSHTHPRIHPE  201 (524)
T ss_dssp             EECCGGGCSSSTTEEEEESCCCSCCCSSCCSSSSEEEHHHHHHHHHHHHCCTTSTTSCCEEEECSCGGGHHHHCTTTCCS
T ss_pred             cChhHhhcCcccchhhhhccccCcccccCCCCCcchhHHHHHHHHHHHcCCCCCCCCeeEEEeccccccccccccccCCC
Confidence               455     4899999944           2333     66899999999 7999999999999987           


Q ss_pred             ---hhhHHHHHHHHhhh
Q 045216           85 ---KKNYSGLHAVLIHF   98 (108)
Q Consensus        85 ---~~~Y~~ry~~f~~~   98 (108)
                         +++|.+++.++++.
T Consensus       202 ~~t~~ey~~~~~e~Aka  218 (524)
T 2yih_A          202 KVGAKELVDRSVSLSKA  218 (524)
T ss_dssp             CCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence               35788888888764

>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl HY families 5, 30, 39 and 51, hydrolase; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A*

Probab=99.70  E-value=8.5e-19  Score=147.71  Aligned_cols=90  Identities=11%  Similarity=0.090  Sum_probs=72.8

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCccccc----CCCC------------ChHHHH-----------------------HH
Q 045216            2 VKKSISLEASIRPWEDRPGHFGDIWMYWT----DDGL------------GYFEFL-----------------------KE   42 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~~~----tn~f------------G~~Efl-----------------------qd   42 (108)
                      |++.|+|+++|||.+       +.|...+    +|.|            |++||+                       ++
T Consensus        47 ~~s~YnWe~~~~~~~-------~~W~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~g~~~~m~tvnl~~~~~~d~  119 (519)
T 2e4t_A           47 RTTGYNWENNFSNAG-------SDWLHYSDTYLLEDGGVPKGEWSTPASVVTTFHDKALSKNVPYTLITLQAAGYVSADG  119 (519)
T ss_dssp             GGTTCCTTTCCEECG-------GGTTTEEESHHHHHTTCCGGGTTSTTHHHHHHHHHHHHTTCCEEEEEECCSSEEESCC
T ss_pred             ccCccccccCCCCcc-------cccccccccccccccccccccccCcchhHHHHHHHHHhcCCCceEEEEecCCccchhc
Confidence            689999999999987       3576442    3333            599998                       67


Q ss_pred             HHHHHHHhcCCC----------------------CCh----H-HHHHHHcCCC-CCcccceEEeccCC--CC--------
Q 045216           43 ALDSIEFARSDP----------------------NST----W-GSVRAAMGHP-DPFDLRYVAIGNED--CG--------   84 (108)
Q Consensus        43 a~d~vEY~ng~~----------------------~t~----w-g~~Ra~~Ghp-~P~~vky~eIGNE~--~g--------   84 (108)
                      |.+++||||.|.                      +|.    | ..||++|||+ +||+|||||||||+  |+        
T Consensus       120 a~~~~e~~~~~~~~w~~~~~~~~~~~~~~p~~~~g~~~~~ewv~yl~~~nG~~~~P~~VkyW~lGNE~dgW~~gh~~~~p  199 (519)
T 2e4t_A          120 NGPVSQEETAPSSRWKEVKFEKGAPFSLTPDTEDDYVYMDEFVNYLVNKYGNASTPTGIKGYSIDNEPALWSHTHPRIHP  199 (519)
T ss_dssp             CEECCGGGCSSSTTEEEEESCCCSCCCSSCCTTSSEEEHHHHHHHHHHHHCCTTSTTSCCEEEECSCGGGHHHHCTTTCC
T ss_pred             cccchhhccCCcccccccccccCCccccCCCCCCChHHHHHHHHHHHHhcCCCcCCCCccEEEeCccccccccCCCcCCC
Confidence            788999999988                      441    3 6799999999 99999999999999  53        


Q ss_pred             ----hhhHHHHHHHHhhh
Q 045216           85 ----KKNYSGLHAVLIHF   98 (108)
Q Consensus        85 ----~~~Y~~ry~~f~~~   98 (108)
                          +++|.++|.++++.
T Consensus       200 ~~~t~~ey~~~~~~~Aka  217 (519)
T 2e4t_A          200 DNVTAKELIEKSVALSKA  217 (519)
T ss_dssp             SCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence                25778888888865

>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A*

Probab=99.52  E-value=4e-15  Score=123.54  Aligned_cols=81  Identities=14%  Similarity=0.025  Sum_probs=65.2

Q ss_pred             CccccccCCCCCCCCCCCCC-CCCCcc-------cccCCCCChHHHH---------------------HHHHHHHHHhcC
Q 045216            2 VKKSISLEASIRPWEDRPGH-FGDIWM-------YWTDDGLGYFEFL---------------------KEALDSIEFARS   52 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~-~n~~Wg-------~~~tn~fG~~Efl---------------------qda~d~vEY~ng   52 (108)
                      +++.|+|+++|||.++||.+ .+..|+       ..+++.  +|||+                     ++|++||||||.
T Consensus        81 ~~d~~~w~~g~~p~~~rp~~~~~~~~~~~~~~~~~~~~~~--~def~~f~~~~G~~~~~~lN~g~~~~~~a~~~v~y~~~  158 (488)
T 3vny_A           81 TSEYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPEA--VNNLSEFLDKTGWKLIYGLNLGKGTPENAADEAAYVME  158 (488)
T ss_dssp             GGGSEEECTTCCGGGSCTTCCCCCCCSSSCCCCEEECHHH--HHHHHHHHHHHCCEEEEEECTTTSCHHHHHHHHHHHHH
T ss_pred             ccceEEEcCCCCCcccCcccccCcchhhccccCceeCHHH--HHHHHHHHHHhCCEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence            68999999999999999985 677783       333333  89998                     999999999996


Q ss_pred             CCCChHHHHHHHcCCCCCcccceEEeccCCCC------------hhhHHHHHHHHhhh
Q 045216           53 DPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCG------------KKNYSGLHAVLIHF   98 (108)
Q Consensus        53 ~~~t~wg~~Ra~~Ghp~P~~vky~eIGNE~~g------------~~~Y~~ry~~f~~~   98 (108)
                      +              .+|++|++||||||+++            +++|.+.|++|++.
T Consensus       159 ~--------------~~~~~l~~welGNEpd~~~~~G~~~~~~t~~~Y~~~~~~~a~a  202 (488)
T 3vny_A          159 T--------------IGADRLLAFQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFTA  202 (488)
T ss_dssp             H--------------HCTTTEEEEEESSCGGGHHHHSSSCTTCCHHHHHHHHHHHHHH
T ss_pred             c--------------ccCCceeEEEecCcccccccCCccCCCCCHHHHHHHHHHHHHH
Confidence            2              68999999999999752            35887777777643

>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum}

Probab=97.77  E-value=1.8e-05  Score=67.46  Aligned_cols=39  Identities=10%  Similarity=0.075  Sum_probs=33.3

Q ss_pred             HHHHHcCCCC-CcccceEEeccCCC--------------ChhhHHHHHHHHhhh
Q 045216           60 SVRAAMGHPD-PFDLRYVAIGNEDC--------------GKKNYSGLHAVLIHF   98 (108)
Q Consensus        60 ~~Ra~~Ghp~-P~~vky~eIGNE~~--------------g~~~Y~~ry~~f~~~   98 (108)
                      -||.++||++ |++|+||+||||+.              .+++|.++|.++++.
T Consensus       158 ~l~~~~G~~~~p~~Vkyw~lgNEpdlW~~tH~dvhp~~~t~eEY~~~~~~~AkA  211 (517)
T 3ik2_A          158 YLVNKYGSASGSKGIKGYSLDNEPSLWPSTHPLIHPDKTKCSEVLDKDTQLAQV  211 (517)
T ss_dssp             HHHHHHCCTTSTTSCCEEEESSCGGGHHHHCTTTCCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCCceeEEecCCCcccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence            5899999997 99999999999984              147888888888754

>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A

Probab=97.62  E-value=4.3e-05  Score=65.30  Aligned_cols=39  Identities=15%  Similarity=0.004  Sum_probs=33.3

Q ss_pred             HHHHHcCCCCCcccceEEeccCC--CC------------hhhHHHHHHHHhhh
Q 045216           60 SVRAAMGHPDPFDLRYVAIGNED--CG------------KKNYSGLHAVLIHF   98 (108)
Q Consensus        60 ~~Ra~~Ghp~P~~vky~eIGNE~--~g------------~~~Y~~ry~~f~~~   98 (108)
                      .||.++|+.+|++||||+||||+  |+            +++|.+++.++++.
T Consensus       185 ~l~~~~G~~~~~~vk~w~l~NE~dlW~~th~d~hp~~~t~~e~~~~~~~~Aka  237 (535)
T 3ii1_A          185 HLVSQWGTAAGGGLRYYILDNEPSIWFSTHRDVHPVGPTMDEIRDKMLDYGAK  237 (535)
T ss_dssp             HHHHHHCCTTTTSCCEEEECSCGGGHHHHTTTTCCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCccCCCCceEEEeCCccccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999  42            36788888888765

>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A*

Probab=94.93  E-value=0.0067  Score=49.02  Aligned_cols=34  Identities=6%  Similarity=-0.201  Sum_probs=21.1

Q ss_pred             ccCCCCCCCCCCCCCCCCCcccccCCCCChHHHHHHH
Q 045216            7 SLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLKEA   43 (108)
Q Consensus         7 ~W~d~IGp~~~Rp~~~n~~Wg~~~tn~fG~~Eflqda   43 (108)
                      .|.|.+|+...+|  .+ .+|....|-.++|++++.+
T Consensus        56 ~w~D~~~~~~~~~--~~-~~g~~~~n~~~~D~~~~~~   89 (503)
T 1w91_A           56 LLSDDVGIYREVE--ID-GEMKPFYNFTYIDRIVDSY   89 (503)
T ss_dssp             TTSTTTCCEEEEE--SS-SSEEEEECCHHHHHHHHHH
T ss_pred             CcCCCceEeeccc--cc-CCCceeeccHHHHHHHHHH
Confidence            4888888765554  23 4554444566788877444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d1qw9a2	367	c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, ca	4e-19

>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 367

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alpha-L-arabinofuranosidase, catalytic domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 78.1 bits (192), Expect = 4e-19
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 21/97 (21%)

Query: 9   EASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK---------------------EALDSI 47
           E  + P E RP      W     + +G  EF+                       A + +
Sbjct: 65  EDGVGPKEQRPRRLDLAWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLV 124

Query: 48  EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCG 84
           E+      S +  +R A G+ +P  ++   +GN   G
Sbjct: 125 EYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMDG 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1qw9a2	367	Alpha-L-arabinofuranosidase, catalytic domain {Bac	100.0
d1uhva2	346	Beta-D-xylosidase, catalytic domain {Thermoanaerob	93.23

>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alpha-L-arabinofuranosidase, catalytic domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=7.7e-39  Score=258.24  Aligned_cols=104  Identities=19%  Similarity=0.345  Sum_probs=97.1

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCcccccCCCCChHHHH---------------------HHHHHHHHHhcCCCCChHHH
Q 045216            2 VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSIEFARSDPNSTWGS   60 (108)
Q Consensus         2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~~~tn~fG~~Efl---------------------qda~d~vEY~ng~~~t~wg~   60 (108)
                      |++.|||+++|||+++||++.+.+|++.++|+|||+|||                     |||+||||||||+++|+||+
T Consensus        58 ~~~~y~W~~~iGp~~~Rp~~~~~~w~~~~~~~~G~~Ef~~~~~~~gaep~~~vn~g~~~~~~a~d~vey~n~~~~t~~~~  137 (367)
T d1qw9a2          58 FVSGYNWEDGVGPKEQRPRRLDLAWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSD  137 (367)
T ss_dssp             GGGGCCGGGGSSCGGGCCCEEETTTTEEECCSSCHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHCCSSSHHHH
T ss_pred             ccCccccccccCChHHCCCccCCCCCCcCcCCCCHHHHHHHHHHhCCeEEEEEeCCCccHHHHHHHHHHHccCCCCHHHH
Confidence            689999999999999999999999999999999999999                     99999999999999999999


Q ss_pred             HHHHcCCCCCcccceEEeccCCCCh--------hhHHHHHHHHhhh----ccCCccc
Q 045216           61 VRAAMGHPDPFDLRYVAIGNEDCGK--------KNYSGLHAVLIHF----YFLDQII  105 (108)
Q Consensus        61 ~Ra~~Ghp~P~~vky~eIGNE~~g~--------~~Y~~ry~~f~~~----~~~~~~~  105 (108)
                      +||+||||+||+|||||||||+||+        +.|..+|++|+++    +|+-+||
T Consensus       138 ~R~~~G~~~P~~v~yweIGNE~~g~~~~g~~~~~~Y~~~~~~f~~amk~~dP~i~li  194 (367)
T d1qw9a2         138 LRIAHGYKEPHKIKTWCLGNAMDGPWQIGHKTAVEYGRIACEAAKVMKWVDPTIELV  194 (367)
T ss_dssp             HHHHTTCCSCCCCCEEEESSCCCSTTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHcCCCCCCCceEEEeccccccccccCCCCHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence            9999999999999999999999874        7899999998854    7766665

>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-D-xylosidase, catalytic domain
species: Thermoanaerobacterium saccharolyticum [TaxId: 28896]

Probab=93.23  E-value=0.025  Score=39.64  Aligned_cols=38  Identities=21%  Similarity=-0.089  Sum_probs=24.3

Q ss_pred             CCCcccceEEeccCCCCh--------hhHHHHHHHHhhh----ccCCccc
Q 045216           68 PDPFDLRYVAIGNEDCGK--------KNYSGLHAVLIHF----YFLDQII  105 (108)
Q Consensus        68 p~P~~vky~eIGNE~~g~--------~~Y~~ry~~f~~~----~~~~~~~  105 (108)
                      .+...+.+||||||.+++        +.|.+-++..++.    .|+.+|+
T Consensus       134 ~~~~~~~~~evwNEp~~~~~~~~~~~~~y~~~~~~~~~aik~~~P~~~v~  183 (346)
T d1uhva2         134 IEEVLKWPFEIWNEPNLKEFWKDADEKEYFKLYKVTAKAIKEVNENLKVG  183 (346)
T ss_dssp             HHHHTTCCEEESSCTTSTTTSGGGCHHHHHHHHHHHHHHHHHHCTTSCEE
T ss_pred             cccccccccccccCcccccCCCCCCHHHHHHHHHHHHHHHhccCCCceEe
Confidence            344479999999999753        5666655555422    5555543