Citrus Sinensis ID: 045233

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
SIFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACLLAVKRKYKKPILKANATNRIDVFSIWNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFYL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEcccccccEEcccccccccccccccccEEEEEcccccEEEcccHHHcccccccEEEcccccccccccccHHcccccccEEcccccccccccHHcccccccccccccccccccccEEEccccEEEccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccEEEcccccEEEEEEEcccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccEEEEcccccEEEEEEcccccccccccccccccHccccccEEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccHcccccEEEcccccccccccHHHccHHHHHHHHccccccccccccHHHccccEEEEcc
Coil and Loop (DISEMBL)
SIFRLVALAWVVIFATAFAFSPIQLETKALLdtgwwnssFWMANyssdhckwiGITCNSAGSIIGLNLSWYDVDLNAQAQLSQlnfscfpnleslRIQAYYygftgsipsdiSALSKLQLLDLSLnrlsgtipsnignlrnlvhldlgnnnltgpipstlarltnLKYLDLKVTSMKnltwldisnnkiegsipgeltelsrpdclslsanklsgpvpfsnkqlSTMYIVRlspnkglgsNFIIVLACLLAVKRKykkpilkanatnridvfsiwnydrsiVYEDLIEATEgfdyliqfpkfesfALSFLFRSSTGTFLIIIFYL
Flexible Loop (DISEMBL)
SIFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSanklsgpvpfsNKQLSTMYIVRLSPNKGLGSNFIIVLACLLAVKRKYKkpilkanatnridvfsiWNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFYL
Low Complexity Region (SEG)
SIFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDIsalsklqlldlslnrlsGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACLLAVKRKYKKPILKANATNRIDVFSIWNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFYL
Disordered region (IsUnstruct)
*IFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIP**********CL************FSNKQLSTMYIVRLSPNKGLGSNFIIVLACLLAVKRKYKKPILKANATNRIDVFSIWNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFY*
Disordered Region (DISOPRED)
SIFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACLLA***********************WNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFYL
Disordered Region (DISEMBL)
SIFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACLLAVKRKYKKPILKANATNRIDVFSIWNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFYL
Disordered Region (DISPRO)
SIFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACLLAVKRKYKKPILKANATNRIDVFSIWNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFYL
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SIFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACLLAVKRKYKKPILKANATNRIDVFSIWNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q42371	976	LRR receptor-like serine/	no	no	0.526	0.175	0.347	1e-20
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.698	0.217	0.286	4e-19
Q9C9H7	847	Receptor-like protein 12	no	no	0.649	0.249	0.331	2e-18
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.501	0.130	0.369	3e-18
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.6	0.192	0.290	4e-18
Q9FL28	1173	LRR receptor-like serine/	no	no	0.661	0.183	0.300	5e-18
Q6XAT2	967	LRR receptor-like serine/	no	no	0.683	0.229	0.299	6e-18
C0LGW6	966	LRR receptor-like serine/	no	no	0.692	0.232	0.300	1e-17
Q0WVM4	634	Probable LRR receptor-lik	no	no	0.723	0.370	0.279	2e-17
Q8GT95	332	Polygalacturonase inhibit	no	no	0.526	0.515	0.324	3e-17

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 103/216 (47%), Gaps = 45/216 (20%)

Query: 41  WMANYSSDHCKWIGITC-NSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESL-RIQ 98
           W  + SSD+C W G++C N   +++ LNLS    DLN   ++S        +L+SL  I 
Sbjct: 47  WTTSPSSDYCVWRGVSCENVTFNVVALNLS----DLNLDGEIS----PAIGDLKSLLSID 98

Query: 99  AYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS 158
                 +G IP +I   S LQ LDLS N LSG IP +I  L+ L  L L NN L GPIPS
Sbjct: 99  LRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPS 158

Query: 159 TLARLTNLKYLDL-----------------------------------KVTSMKNLTWLD 183
           TL+++ NLK LDL                                    +  +  L + D
Sbjct: 159 TLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPDLCQLTGLWYFD 218

Query: 184 ISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPF 219
           + NN + GSIP  +   +    L LS N+L+G +PF
Sbjct: 219 VRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPF 254

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 129/304 (42%), Gaps = 77/304 (25%)

Query: 6   VALAWVVIFATAFAFSPIQLETKALLDTGWWNSSF-----------WMANYSSDHC-KWI 53
           V L   ++ + +FA S    E  ALL    W S+F           W+   +S  C  W 
Sbjct: 30  VLLIISIVLSCSFAVSATVEEANALLK---WKSTFTNQTSSSKLSSWVNPNTSSFCTSWY 86

Query: 54  GITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFT-------- 105
           G+ C S GSII LNL+   +    +       FS  PNL  + +    +  T        
Sbjct: 87  GVAC-SLGSIIRLNLTNTGI----EGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRF 141

Query: 106 --------------GSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN 151
                         G IP ++  LS L  L L  N+L+G+IPS IG L  +  + + +N 
Sbjct: 142 SKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNL 201

Query: 152 LTGPIPSTLARLTNLKYLDLKVTS-----------------------------------M 176
           LTGPIPS+   LT L  L L + S                                   +
Sbjct: 202 LTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNL 261

Query: 177 KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
           KN+T L++  N++ G IP E+  ++  D LSL  NKL+GP+P +   + T+ ++ L  N+
Sbjct: 262 KNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQ 321

Query: 237 GLGS 240
             GS
Sbjct: 322 LNGS 325

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 31  LDTGWWNSSFWMA--NYSSDHCKWIGITCNS-AGSIIGLNL--SWYDVDLNAQAQLSQLN 85
           ++  W   + W    N S+D C W G+TCN  +G +I L++  ++ +  L   + L +L 
Sbjct: 51  INASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQ 110

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHL 145
           +    +L+      Y     G IPS +  LS L L++L  N+  G IP++IGNL  L HL
Sbjct: 111 Y--LRHLDLTNCNLY-----GEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHL 163

Query: 146 DLGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKNLTWLDISNNKIEGSIP 194
            L NN LTG IPS+L  L+ L  L+L            +  +K L  L +++N + G IP
Sbjct: 164 ILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIP 223

Query: 195 GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACL 249
             L  LS    L L+ N+L G VP S   L  + ++    N  L  N  I  A L
Sbjct: 224 SSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFE-NNSLSGNIPISFANL 277

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 13/176 (7%)

Query: 71  YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG 130
           +DV  N       L      NL+ LR+      FTG IP     +S+L LLD+S N LSG
Sbjct: 581 FDVTENGFEGDIPLELGKSTNLDRLRLGKNQ--FTGRIPRTFGKISELSLLDISRNSLSG 638

Query: 131 TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKNL 179
            IP  +G  + L H+DL NN L+G IP+ L +L  L  L L           ++ S+ N+
Sbjct: 639 IIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNI 698

Query: 180 TWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
             L +  N + GSIP E+  L   + L+L  N+LSGP+P +  +LS ++ +RLS N
Sbjct: 699 LTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRN 754

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 49/244 (20%)

Query: 41  WMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQL------NFSC------ 88
           W  + +SDHC W G+ CNS G++  L+L+  ++       +SQL      N SC      
Sbjct: 51  WKLSDTSDHCNWTGVRCNSNGNVEKLDLAGMNLTGKISDSISQLSSLVSFNISCNGFESL 110

Query: 89  ----FPNLESLRI-QAYYYG---------------------FTGSIPSDISALSKLQLLD 122
                P L+S+ I Q  + G                      +G++  D+  L  L++LD
Sbjct: 111 LPKSIPPLKSIDISQNSFSGSLFLFSNESLGLVHLNASGNNLSGNLTEDLGNLVSLEVLD 170

Query: 123 LSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMK----- 177
           L  N   G++PS+  NL+ L  L L  NNLTG +PS L +L +L+   L     K     
Sbjct: 171 LRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELPSVLGQLPSLETAILGYNEFKGPIPP 230

Query: 178 ------NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVR 231
                 +L +LD++  K+ G IP EL +L   + L L  N  +G +P     ++T+ ++ 
Sbjct: 231 EFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYENNFTGTIPREIGSITTLKVLD 290

Query: 232 LSPN 235
            S N
Sbjct: 291 FSDN 294

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 116/266 (43%), Gaps = 51/266 (19%)

Query: 14  FATAFAFSPIQLETKAL--LDTGWWNS-----SFWMANYSSDHCKWIGITCNSAGSIIGL 66
           F  A A    + E +AL     G  N      S W    S  HC W GITC+S G ++ +
Sbjct: 18  FGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSV 77

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRI-QAYYYGFTGSIPSDISALSKLQLLDLSL 125
           +L         + QL  +      NL  L++       FTG IP++I  L++L  L L L
Sbjct: 78  SL--------LEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYL 129

Query: 126 NRLSGTIPSNIGNLRNLVHLDLGN------------------------NNLTGPIPSTLA 161
           N  SG+IPS I  L+N+ +LDL N                        NNLTG IP  L 
Sbjct: 130 NYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLG 189

Query: 162 RLTNLKY-----------LDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSA 210
            L +L+            + + + ++ NLT LD+S N++ G IP +   L     L L+ 
Sbjct: 190 DLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTE 249

Query: 211 NKLSGPVPFSNKQLSTMYIVRLSPNK 236
           N L G +P      S++  + L  N+
Sbjct: 250 NLLEGDIPAEIGNCSSLVQLELYDNQ 275

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 25/247 (10%)

Query: 11  VVIFATAFAFSPIQLETKALLDTGWWNSSF------WMANYSSDHCKWIGITCNSAG-SI 63
           +V+F    + SP+  E KAL+      S+       W   ++ D C W G+ C++   ++
Sbjct: 16  MVVFMLLGSVSPMNNEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCDNVSLNV 75

Query: 64  IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDL 123
           + LNLS    +LN   ++S        NL+S+ +Q    G  G IP +I     L  +D 
Sbjct: 76  VSLNLS----NLNLGGEISSA-LGDLMNLQSIDLQGNKLG--GQIPDEIGNCVSLAYVDF 128

Query: 124 SLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN----- 178
           S N L G IP +I  L+ L  L+L NN LTGPIP+TL ++ NLK LDL    +       
Sbjct: 129 STNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRL 188

Query: 179 ------LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRL 232
                 L +L +  N + G++  ++ +L+      +  N L+G +P S    ++  I+ +
Sbjct: 189 LYWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDV 248

Query: 233 SPNKGLG 239
           S N+  G
Sbjct: 249 SYNQITG 255

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 28/253 (11%)

Query: 6   VALAWVVIFATAFAFSPIQLETKALLDTGWWNSSF------WMANYSSDHCKWIGITCNS 59
           +A+   ++F  A A +    E KAL+      S+       W   ++SD C W G+ C++
Sbjct: 12  LAMVGFMVFGVASAMNN---EGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDN 68

Query: 60  AG-SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKL 118
              S++ LNLS     LN   ++S        NL+S+ +Q       G IP +I   + L
Sbjct: 69  VSYSVVSLNLS----SLNLGGEISPA-IGDLRNLQSIDLQGNK--LAGQIPDEIGNCASL 121

Query: 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN 178
             LDLS N L G IP +I  L+ L  L+L NN LTGP+P+TL ++ NLK LDL    +  
Sbjct: 122 VYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTG 181

Query: 179 -----------LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTM 227
                      L +L +  N + G++  ++ +L+      +  N L+G +P S    ++ 
Sbjct: 182 EISRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSF 241

Query: 228 YIVRLSPNKGLGS 240
            I+ +S N+  G 
Sbjct: 242 QILDISYNQITGE 254

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0WVM4|Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 23/258 (8%)

Query: 44  NYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYG 103
            +S D C W  I+C+S   +IGL      +       +  L      NL  + +Q     
Sbjct: 57  EFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLT-----NLRQVSLQNN--N 109

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163
            +G IP +I +L KLQ LDLS NR SG IP ++  L NL +L L NN+L+GP P++L+++
Sbjct: 110 ISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQI 169

Query: 164 TNLKYLDLKVTSMKN------LTWLDISNNKIEGSIPGELTELSRPDCL--SLSANKLSG 215
            +L +LDL   +++           +++ N +       + + S P+    S+SA+ LS 
Sbjct: 170 PHLSFLDLSYNNLRGPVPKFPARTFNVAGNPL-------ICKNSLPEICSGSISASPLSV 222

Query: 216 PVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACLLAVKRKYKKPILKANATNRIDVFSIW 275
            +  S+ + + +  V L  + G   + I+ L  +   K++ +  +L+ +      +  + 
Sbjct: 223 SLRSSSGRRTNILAVALGVSLGFAVSVILSLGFIWYRKKQRRLTMLRISDKQEEGLLGLG 282

Query: 276 NYDRSIVYEDLIEATEGF 293
           N  RS  + +L  AT+GF
Sbjct: 283 NL-RSFTFRELHVATDGF 299

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GT95|PGIP1_ORYSJ Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 20/191 (10%)

Query: 46  SSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFT 105
           S+D C+W  + C+ AG +  + +   + D+  Q   +    +   +L   R+     G +
Sbjct: 55  SADCCEWDHVRCDEAGRVNNVFIDGAN-DVRGQIPSAVAGLTALMSLSLFRLP----GLS 109

Query: 106 GSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
           G IP+ ++ALS LQ L +S   +SG IP ++  +R+L  +DL +N+LTGPIP++ + L N
Sbjct: 110 GPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPN 169

Query: 166 LKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLS 225
           L+ LDL+             +NK+ G IP  L +  +   L LS N+L+GP+P  + Q  
Sbjct: 170 LRSLDLR-------------SNKLTGCIPAGLVQ-GQFRSLILSYNQLTGPIPRDDAQ-D 214

Query: 226 TMYIVRLSPNK 236
            +  V LS N+
Sbjct: 215 EINTVDLSHNR 225

Inhibitor of fungal polygalacturonase. Regulates floral organ number.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
147834735	513	hypothetical protein VITISV_033633 [Viti	0.84	0.532	0.334	2e-34
147769855	1643	hypothetical protein VITISV_039063 [Viti	0.867	0.171	0.329	6e-34
356506370	798	PREDICTED: probable LRR receptor-like se	0.633	0.258	0.442	1e-33
357451683	1029	Receptor protein kinase-like protein [Me	0.646	0.204	0.417	1e-33
297738138	577	unnamed protein product [Vitis vinifera]	0.852	0.480	0.355	2e-33
296087789	975	unnamed protein product [Vitis vinifera]	0.803	0.267	0.352	2e-33
359488968	448	PREDICTED: probable LRR receptor-like se	0.867	0.629	0.326	1e-32
255563458	528	serine-threonine protein kinase, plant-t	0.633	0.390	0.395	3e-32
357501759	868	Receptor protein kinase-like protein [Me	0.698	0.261	0.386	9e-31
357501755	791	Receptor-like kinase [Medicago truncatul	0.704	0.289	0.398	5e-30

>gi|147834735|emb|CAN59749.1| hypothetical protein VITISV_033633 [Vitis vinifera]

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 169/356 (47%), Gaps = 83/356 (23%)

Query: 20  FSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQA 79
            S +  E  AL ++GWW    W    +S+HC W+GITCN A  + G++L  Y V + +  
Sbjct: 34  HSQVVAEADALRNSGWW---IWSHPATSNHCSWLGITCNEAKHVTGISLQSYQVPVGSLT 90

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
           +L+ L+ S             +   TG IPS +S L+KL  LD+S N+L+G+IP  IG L
Sbjct: 91  ELTYLDLS-------------WNVLTGVIPSSLSHLTKLTHLDISYNQLNGSIPHQIGTL 137

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKNLTWLDISNNK 188
             L  LDL  N LT  IPS+L RLT L  L+L           ++ ++++L  L++S+N 
Sbjct: 138 TELTGLDLSWNELTSAIPSSLDRLTKLTSLNLCRNQIKGSIPPEIGNIEDLVSLNLSSNL 197

Query: 189 IEGSIPGELTELSRPDCLSLSANKLSGPVP--FSNKQLSTMYIVRLSPNKGLGS------ 240
           I G IP +L  L R   L+LS N+LSG VP   +N    T   + LS N  L S      
Sbjct: 198 ISGEIPSKLKNLKRLKNLNLSYNRLSGNVPPFITNNCYRTT--IDLSYNDDLESYTPFFC 255

Query: 241 ----------------NFIIVLACLLAV----------KRKYKKP---ILKANATNRIDV 271
                              I++  LL +          K++  +P   + K N     D+
Sbjct: 256 NGRKVPTGGTTAIDPFQLTIIIFSLLTLILGFALGLWWKKRQVQPESMVAKKNG----DL 311

Query: 272 FSIWNYDRSIVYEDLIEATEGFD-------------YLIQFPKFESFALSFLFRSS 314
           FSIW+YD  I +ED+I ATE FD             Y  Q P  +  A+  L RS 
Sbjct: 312 FSIWDYDGRIAFEDIISATEDFDIRYCIGVGGYGSVYRAQLPSGKVVAVKKLHRSE 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769855|emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 118/358 (32%), Positives = 161/358 (44%), Gaps = 76/358 (21%)

Query: 24  QLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQ 83
           Q E +AL  +G W+   W +N S +HC W G+TCN AG +I + ++         +  S+
Sbjct: 37  QAEAEALRSSGCWS---WESNIS-NHCHWSGVTCNEAGHVIKI-MNLMSCHTAVPSGFSK 91

Query: 84  LNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLV 143
             FS FP+L  L +     G TGSIP  I  L+ L  LDLS N+L G IP  +G L  L 
Sbjct: 92  WKFSSFPSLIHLDLSIC--GLTGSIPDQIGNLANLIYLDLSYNQLHGNIPYQLGALTKLT 149

Query: 144 HLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKNLTWLDISNNKIEGS 192
           +LDL  N L+G IPS+L  L  L  L+L           ++ ++K+L  L +  N + G 
Sbjct: 150 YLDLSYNALSGVIPSSLGYLIKLTSLNLVRNQINGFIPPEIGNLKDLVELSLGYNLLRGK 209

Query: 193 IPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN--KG------------- 237
           IP +L  L + + L LS N+LSG +P           + LS N  KG             
Sbjct: 210 IPHQLQNLKKLETLDLSYNRLSGSIPSFLGHGHKWKSIDLSHNGLKGHTPLESQDQSHHK 269

Query: 238 ---------LGSNFIIVL---ACLLAV------KRKYKKPIL------------KANATN 267
                     G +F I L   A +L        KR++   IL                T 
Sbjct: 270 IGRKITIVTFGISFFITLFLVALILGFLSLWRKKRRFHPSILFLGLKKRKIQSEATTTTK 329

Query: 268 RIDVFSIWNYDRSIVYEDLIEATEGFD-------------YLIQFPKFESFALSFLFR 312
             D+FSIW YD  I YED+IEATE FD             Y +Q P  +  A+  L R
Sbjct: 330 NGDLFSIWGYDGRIAYEDIIEATEDFDIKYCIGTGGHGSVYKVQLPSGKVVAVKKLHR 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506370|ref|XP_003521957.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/228 (44%), Positives = 130/228 (57%), Gaps = 22/228 (9%)

Query: 21  SPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQ 80
           S I  E +ALL +GWWN    +    SDHC W  ITCN AGS+I + L W         +
Sbjct: 8   STINEERQALLQSGWWNDYLNI----SDHCAWDAITCNEAGSVIII-LGWKIPPSEELRR 62

Query: 81  LSQLNFSCFPNLESLRIQAYYYGFT--GSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN 138
           L  LN + FPNLE L    Y YG +  GSIP +IS L+KL  L LS N L G+IP  +G+
Sbjct: 63  LQNLNMTAFPNLEVL----YLYGMSLRGSIPKEISTLTKLTDLYLSNNHLQGSIPVELGS 118

Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMK--------NLTWLD---ISNN 187
           L  LV L L NN+LTG IPSTL++L NL+YL L    ++        NLT L    +SNN
Sbjct: 119 LTQLVLLSLYNNSLTGSIPSTLSQLVNLRYLLLSFNQLEGAIPAELGNLTQLIGFYLSNN 178

Query: 188 KIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
            I GSIP  L +L     L L +N++ GP+P     L +++I+ LS N
Sbjct: 179 SITGSIPSSLGQLQNLTILLLDSNRIQGPIPEEFGNLKSLHILYLSNN 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451683|ref|XP_003596118.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355485166|gb|AES66369.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/230 (41%), Positives = 127/230 (55%), Gaps = 20/230 (8%)

Query: 23  IQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNA----- 77
           +Q+E  A+L++GWWN+S+   N S D C   GI CN AGSII + +   D    A     
Sbjct: 25  LQMEANAILNSGWWNTSYADFNIS-DRCHGHGIFCNDAGSIIAIKIDSDDSTYAAWEYDY 83

Query: 78  -QAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNI 136
               LS LN +CF NLESL I+    G  G+IP +I  LSKL  LD+S N L G +P ++
Sbjct: 84  KTRNLSTLNLACFKNLESLVIRKI--GLEGTIPKEIGHLSKLTHLDMSYNNLQGQVPHSL 141

Query: 137 GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKNLTWLDIS 185
           GNL  L HLDL  N L G +P +L  L+ L +LDL            + ++  LT LD+S
Sbjct: 142 GNLSKLTHLDLSANILKGQVPHSLGNLSKLTHLDLSDNILSGVVPHSLGNLSKLTHLDLS 201

Query: 186 NNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
           +N + G +P  L  LS+   L LS N LSG VP S   LS +  + LS N
Sbjct: 202 DNLLSGVVPHSLGNLSKLTHLDLSDNLLSGVVPPSLGNLSKLTHLDLSVN 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738138|emb|CBI27339.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 162/335 (48%), Gaps = 58/335 (17%)

Query: 6   VALAWVVIFATAFAFSPIQ-LETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSII 64
           V + WVV  A A A S    +E +AL  + WW S     N ++ HC W GI+CN+ GS+ 
Sbjct: 8   VIVMWVVAMAAAAAASSQTWIEGEALRRSTWWRS----YNTTTGHCNWPGISCNAGGSVT 63

Query: 65  GLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLS 124
            +    + V       L+Q NFS FPNL  +R+     G  G IP  I  L+KL  LDLS
Sbjct: 64  EI----WAVPTQENGLLTQFNFSSFPNL--VRLNFSSLGLNGDIPHQIGTLTKLTHLDLS 117

Query: 125 LNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL-------KYLDLKVTSMK 177
            N LSG +P ++ NL  LV L+LG N+++G IPS +  L NL        YL+  + S+ 
Sbjct: 118 HNFLSGELPLSLTNLTKLVELNLGYNHISGQIPSEIGNLRNLVGLVLDCNYLNGVIPSIP 177

Query: 178 N-------LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIV 230
           +       L  LD+S N I G+IP +    +  + L LS N L G VPF    L +++  
Sbjct: 178 SEIGGLVALRKLDLSVNNISGTIPLQFQNFNSLEYLDLSYNYLEGYVPFE-LHLPSLFRA 236

Query: 231 RLSPNKGLGSNFI------------------------------IVLACLLAVKRKYKK-P 259
               NKGL  +                                I+   LL  +RK +K  
Sbjct: 237 -FEHNKGLCGDTKFGIPPCRKRNRITIIIIVVICLCSALLISSIIFGVLLIWRRKTRKLQ 295

Query: 260 ILKANATNRIDVFSIWNYDRSIVYEDLIEATEGFD 294
             +A  T   D+FSIW+YD  I YED+IEATE FD
Sbjct: 296 PEEATTTQNGDIFSIWDYDGKIAYEDIIEATEDFD 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087789|emb|CBI35045.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 164/318 (51%), Gaps = 57/318 (17%)

Query: 24  QLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQ 83
           Q+E +ALL++GWW S     ++ SDHC W GITCN  G +I +   +Y     A  +LS+
Sbjct: 41  QVEKEALLESGWW-SGETDHDHDSDHCDWSGITCNEEGHVIAV---YY----RASGELSK 92

Query: 84  LNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLV 143
           L FS FP+L +  I  +    +G IP  I +L+K+  LDLS N LSG+IP  I  L  L 
Sbjct: 93  LKFSSFPSLRT--IDLHDGRLSGRIPHQIGSLTKVIYLDLSRNELSGSIPDQIATLTKLT 150

Query: 144 HLDLGNNNLTGPIPSTLARLTNLKYLDL-------------------------------- 171
           +LDL  N L+G IP  +  LT+L YLDL                                
Sbjct: 151 YLDLSRNELSGSIPPQINTLTSLNYLDLSHNELNGRIPQQIGTLIRLTHLDLYSNELSGS 210

Query: 172 ---KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMY 228
              ++ ++  L +LD+SNN + GSIP +L  L++     LS N+LSG +P S   LS + 
Sbjct: 211 IPDEIDTLTELAYLDLSNNVLNGSIPHQLGALAKLTYFDLSWNELSGDIPSSFGHLSNLI 270

Query: 229 IVRLSPNK-------GLGSNFIIVLACLLAVKRKYKKP-----ILKANATNRIDVFSIWN 276
            + L+ N+        +G+   +V   L +     K P     +  A  T R D+FS+W+
Sbjct: 271 SLCLNNNQINGPIPEDIGNLEDLVDLDLSSNSISGKIPSQIQNLKSAAETRRGDLFSVWD 330

Query: 277 YDRSIVYEDLIEATEGFD 294
           YD +I Y+D+I++TE FD
Sbjct: 331 YDGTIAYQDIIQSTENFD 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488968|ref|XP_003633848.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 161/358 (44%), Gaps = 76/358 (21%)

Query: 24  QLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQ 83
           Q E +AL  +G W+   W +N S +HC W G+TCN AG +I + ++         +  S+
Sbjct: 37  QAEAEALRSSGCWS---WESNIS-NHCHWSGVTCNEAGHVIKI-MNLMSCHTAVPSGFSK 91

Query: 84  LNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLV 143
             FS FP+L  L +     G TGSIP  I  L+ L  LDLS N+L G IP  +G L  L 
Sbjct: 92  WKFSSFPSLIHLDLSIC--GLTGSIPDQIGNLANLIYLDLSYNQLHGNIPYQLGALTKLT 149

Query: 144 HLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKNLTWLDISNNKIEGS 192
           +LDL  N L+G IPS+L  L  L  L+L           ++ ++K+L  L +  N + G 
Sbjct: 150 YLDLSYNALSGVIPSSLGYLIKLTSLNLVRNQINGFIPPEIGNLKDLVELSLGYNLLRGK 209

Query: 193 IPGELTELSRPDCLSLSANKLSGPVP------------------------FSNKQLSTMY 228
           IP +L  L + + L LS N+LSG +P                          ++  S   
Sbjct: 210 IPHQLQNLKKLETLDLSYNRLSGSIPSFLGHGHKWKSIDLSHNGLKGHTPLESQDQSHHK 269

Query: 229 IVRLSPNKGLGSNFIIVL---ACLLAV------KRKYKKPIL------------KANATN 267
           I R       G +F I L   A +L        KR++   IL             A  T 
Sbjct: 270 IGRKITIVTFGISFFITLFLVALILGFLSLWRKKRRFHPSILFLGLKKRKIQSEAATTTK 329

Query: 268 RIDVFSIWNYDRSIVYEDLIEATEGFD-------------YLIQFPKFESFALSFLFR 312
             D+FSIW YD  I YED+IEATE FD             Y +Q P  +  A+  L R
Sbjct: 330 NGDLFSIWGYDGRIAYEDIIEATEDFDIKYCIGTGGHGSVYKVQLPSGKVVAVKKLHR 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563458|ref|XP_002522731.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223537969|gb|EEF39582.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 19/225 (8%)

Query: 26  ETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLN 85
           E  ALL++GWW   F   N +SDHC+W GITCN  G+++ ++   Y  D   ++ +  LN
Sbjct: 6   EGNALLESGWWCLDF---NITSDHCRWPGITCNQLGAVVEISPPLYCTD---KSSIRNLN 59

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHL 145
           FS FPNL  +R+     G T SIP +I  LS L LL+LS N L   IPS +G L NL HL
Sbjct: 60  FSYFPNL--IRLVLDGNGVTRSIPHEIGNLSPLVLLNLSYNHLLDQIPSALGLLTNLTHL 117

Query: 146 DLGNNNLTGPIPSTLARLTNLK-----------YLDLKVTSMKNLTWLDISNNKIEGSIP 194
           DL +N++ GPIPST+  L NLK           Y+  ++ ++KNL +LD S N++ G IP
Sbjct: 118 DLTHNSIFGPIPSTIGLLANLKKFSLADNPTYGYIPPEIGNLKNLHYLDTSRNQLIGEIP 177

Query: 195 GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG 239
             L+ L + + L L  N+++G +P       ++  + +S N+ +G
Sbjct: 178 SFLSNLIQLESLRLHENQINGSIPNKIGNSRSLSFLSISRNQLMG 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501759|ref|XP_003621168.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355496183|gb|AES77386.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/246 (38%), Positives = 129/246 (52%), Gaps = 19/246 (7%)

Query: 8   LAWVVIFAT--AFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIG 65
           L W +I  T      S +Q+E   + + GWW +     N S + C W  I+CN  GSI  
Sbjct: 7   LTWGLIMGTRSGAMTSQLQMEADVIQNNGWWYTYGGGFNIS-NRCNWPAISCNKVGSIKA 65

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL 125
           +N+S+    L  Q Q S LN S F NLES+   +      G+IP +I  LSKL  LDLS 
Sbjct: 66  INISF---ALTWQTQFSTLNISVFHNLESIVFASIE--LQGTIPKEIGLLSKLTHLDLSN 120

Query: 126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVT 174
           N L G +P ++GNL  L+HLDL NN L G +P +L  L+NL +LDL            + 
Sbjct: 121 NFLGGELPPSLGNLSKLIHLDLSNNRLGGEVPPSLGNLSNLTHLDLSNNFLGGEIPPSIG 180

Query: 175 SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSP 234
           ++K L +L IS   I+GSIP EL  L     L LS N++ G +P S   L  +  + +S 
Sbjct: 181 NLKQLEYLHISETYIQGSIPLELGFLKNLTRLDLSKNRIKGEIPPSLGNLKKLEYLDISY 240

Query: 235 NKGLGS 240
           N   GS
Sbjct: 241 NNIQGS 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501755|ref|XP_003621166.1| Receptor-like kinase [Medicago truncatula] gi|355496181|gb|AES77384.1| Receptor-like kinase [Medicago truncatula]

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 130/251 (51%), Gaps = 22/251 (8%)

Query: 8   LAWVVIFAT--AFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIG 65
           L W  I  T  A   S   +E  A+L++GWWN+S    N +   C W  I CN AGSI  
Sbjct: 22  LIWPFIVGTQSASVTSQPHMEANAILNSGWWNTSDAYFNITF-LCTWKEIVCNKAGSIKR 80

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL 125
           +   + D    ++     LN S F NLE L +  Y  G  G+IP +I  L+KL  +DLS 
Sbjct: 81  I---FIDSATTSEIHFETLNLSVFHNLEILFV--YGIGLQGTIPEEIGLLTKLTDIDLSH 135

Query: 126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVT 174
           N L G IP +IGNLR L +LD+  NNL   IP  L  + NL  LDL            + 
Sbjct: 136 NSLEGKIPPSIGNLRQLKNLDISYNNLQVSIPHELGFIKNLTSLDLSHNRIKGQIPSSLG 195

Query: 175 SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSP 234
           ++K L +LDIS N I+GSIP EL  L     L LS N+L+G  P S   L+ +  + +S 
Sbjct: 196 NLKQLDYLDISCNNIQGSIPHELGFLKNITTLHLSDNRLNGNFPISLTDLTQLLYLDISN 255

Query: 235 N---KGLGSNF 242
           N    GL SNF
Sbjct: 256 NFLTGGLPSNF 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.652	0.250	0.320	1.4e-16
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.575	0.209	0.317	1.5e-16
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.563	0.246	0.272	2e-16
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.603	0.207	0.313	6.2e-16
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.618	0.210	0.324	1e-15
TAIR|locus:2182260	371	AT5G12940 [Arabidopsis thalian	0.578	0.506	0.331	1.7e-15
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.683	0.229	0.283	2e-15
TAIR|locus:2098267	836	IMK2 "inflorescence meristem r	0.68	0.264	0.299	8.3e-15
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.526	0.163	0.326	8.5e-15
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.581	0.216	0.315	1.2e-14

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 75/234 (32%), Positives = 105/234 (44%)

Query:    31 LDTGWWNSSFWMA--NYSSDHCKWIGITCNS-AGSIIGLNLSWYDVDLNAQAQLSQLNFS 87
             ++  W   + W    N S+D C W G+TCN  +G +I L++   +  LN      + N S
Sbjct:    51 INASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIP--NTFLN---NYLKTNSS 105

Query:    88 CFPNLESLR-IQAYYYGFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLD 146
              F  L+ LR +        G IPS +                 G IP++IGNL  L HL 
Sbjct:   106 LF-KLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLI 164

Query:   147 LGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKNLTWLDISNNKIEGSIPG 195
             L NN LTG IPS+L  L+ L  L+L            +  +K L  L +++N + G IP 
Sbjct:   165 LANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPS 224

Query:   196 ELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACL 249
              L  LS    L L+ N+L G VP S   L  + ++    N  L  N  I  A L
Sbjct:   225 SLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFE-NNSLSGNIPISFANL 277

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 66/208 (31%), Positives = 99/208 (47%)

Query:    46 SSDHCKWIGITCNS-AGSIIGLNLSWYDVD--LNAQAQLSQLNFSCFPNLESLRIQAYYY 102
             +SD C W G+TCN+ +G +I LNLS   +    ++ + +  L+F     L +L     + 
Sbjct:    16 NSDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHF-----LTTL--DRSHN 68

Query:   103 GFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR 162
              F G I S I                 G I ++IGNL  L  LDL  N  +G IPS++  
Sbjct:    69 DFEGQITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSGQIPSSIGN 128

Query:   163 LTNLKYLDLK-----------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSAN 211
             L++L +L L            + ++ +LT+L +S N+  G  P  +  LS    L LS N
Sbjct:   129 LSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYN 188

Query:   212 KLSGPVPFSNKQLSTMYIVRLSPNKGLG 239
             K SG +P S   LS + ++ LS N   G
Sbjct:   189 KYSGQIPSSIGNLSQLIVLYLSVNNFYG 216

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 54/198 (27%), Positives = 101/198 (51%)

Query:    41 WMANYSSDHCKWIGITCN-SAGSIIGLNLSWYDVD--LNAQAQLSQLNFSCFPNLESLRI 97
             W  N  +D C W G++C+   G ++ L+L +  ++  L + + L +L      +L+ L +
Sbjct:     5 WRNN--TDCCSWDGVSCDPKTGVVVELDLQYSHLNGPLRSNSSLFRLQ-----HLQKLVL 57

Query:    98 QAYYYGFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIP 157
              + +   +G +P  I                 G IPS++GNL  L HLDL  N+ T   P
Sbjct:    58 GSNH--LSGILPDSIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLDLSYNDFTSEGP 115

Query:   158 STLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPV 217
              ++  L  L  + LK++S+   TW+D+ +N+++G +P  ++ LS+ +   +S N  SG +
Sbjct:   116 DSMGNLNRLTDMLLKLSSV---TWIDLGDNQLKGMLPSNMSSLSKLEAFDISGNSFSGTI 172

Query:   218 PFSNKQLSTMYIVRLSPN 235
             P S   + ++ ++ L  N
Sbjct:   173 PSSLFMIPSLILLHLGRN 190

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 69/220 (31%), Positives = 102/220 (46%)

Query:    41 WMANYSSDHCKWIGITCNS-AGSIIGLNLS--WYDVDLNAQAQLSQLNFSCFPNLESLRI 97
             W  N  SD C W GITC++ +G +I L+LS  W     ++ + L +L      NL  L +
Sbjct:    80 WRNN--SDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQ-----NLRVLDL 132

Query:    98 QAYYYGFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIP 157
                     G IPS I                 G IPS+I NL  L  L L +N  +G IP
Sbjct:   133 TQN--DLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIP 190

Query:   158 STLARLTNLKYLDLK-----------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCL 206
             S++  L++L  L+L            + ++ NLT+L + +N   G IP  +  L+R   L
Sbjct:   191 SSIGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYL 250

Query:   207 SLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVL 246
              LS N   G +P S   L+ + ++++  NK L  N  I L
Sbjct:   251 YLSYNNFVGEIPSSFGNLNQLIVLQVDSNK-LSGNVPISL 289

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 72/222 (32%), Positives = 104/222 (46%)

Query:    46 SSDHCKWIGITCNSAGSIIGLN-LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGF 104
             SS+H  + G   NS G++  L  L+ +D   + QA  S  N S   +L  L +   Y  F
Sbjct:   153 SSNH--FSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLS---HLTFLDLS--YNRF 205

Query:   105 TGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT 164
              G  PS I                 G IPS+IGNL NL  LDL NNN +G IPS +  L+
Sbjct:   206 FGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLS 265

Query:   165 NLKYLDL-------KVTS----MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213
              L +L L       ++ S    +  LT L + +NK+ G+ P  L  L+    LSLS NK 
Sbjct:   266 QLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKF 325

Query:   214 SGPVPFSNKQLSTMYIVRLSPNKGLGS--NFIIVLACLLAVK 253
             +G +P +   LS +     S N   G+  +F+  +  L  ++
Sbjct:   326 TGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIR 367

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2182260 AT5G12940 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 69/208 (33%), Positives = 101/208 (48%)

Query:    48 DHCK-WIGITCN-SAGSIIGLNLSWYDVD-LNAQAQLSQL-NFSCFPNLESLR-----IQ 98
             D CK W G++C+ +   + G+ L     D L  +A+ S L   S  P++  L      I 
Sbjct:    57 DCCKGWYGVSCDPNTRRVAGITLRGESEDPLFQKAKRSGLMTGSISPSICKLTRLSGIII 116

Query:    99 AYYYGFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPS 158
             A + G +G IPS I                 G IP+NIG L  L  L+L +N+L G IP 
Sbjct:   117 ADWKGISGVIPSCIENLPFLRHLDLVGNKFSGVIPANIGKLLRLKVLNLADNHLYGVIPP 176

Query:   159 TLARLTNLKYLDLKVTSMKNLTWLDI-----------SNNKIEGSIPGELTELSRPDCLS 207
             ++ RL +L +LDL+  ++  +   DI           S NKI G IP  LT + R   L 
Sbjct:   177 SITRLVSLSHLDLRNNNISGVIPRDIGRLKMVSRVLLSGNKISGQIPDSLTRIYRLADLE 236

Query:   208 LSANKLSGPVPFSNKQLSTMYIVRLSPN 235
             LS N+L+GP+P S  ++S +  + L  N
Sbjct:   237 LSMNRLTGPIPASFGKMSVLATLNLDGN 264

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 70/247 (28%), Positives = 115/247 (46%)

Query:    11 VVIFATAFAFSPIQLETKALL--DTGWWNSSF----WMANYSSDHCKWIGITCNSAG-SI 63
             +V+F    + SP+  E KAL+     + N +     W   ++ D C W G+ C++   ++
Sbjct:    16 MVVFMLLGSVSPMNNEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCDNVSLNV 75

Query:    64 IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDIXXXXXXXXXXX 123
             + LNLS    +LN   ++S        NL+S+ +Q    G  G IP +I           
Sbjct:    76 VSLNLS----NLNLGGEISSA-LGDLMNLQSIDLQGNKLG--GQIPDEIGNCVSLAYVDF 128

Query:   124 XXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN----- 178
                   G IP +I  L+ L  L+L NN LTGPIP+TL ++ NLK LDL    +       
Sbjct:   129 STNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRL 188

Query:   179 LTW------LDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRL 232
             L W      L +  N + G++  ++ +L+      +  N L+G +P S    ++  I+ +
Sbjct:   189 LYWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDV 248

Query:   233 SPNKGLG 239
             S N+  G
Sbjct:   249 SYNQITG 255

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2098267 IMK2 "inflorescence meristem receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 8.3e-15, P = 8.3e-15
 Identities = 74/247 (29%), Positives = 107/247 (43%)

Query:     9 AWVVIFATAFAFSPIQLETKALLD-TGWWNSSFWMANYSSDHCK-WIGITCNSAGSIIGL 66
             +W  I  T   +  +Q     L+D TG   S  W  + SS  C  W GI C   G ++ +
Sbjct:    43 SWDGIVVTQANYQALQAIKHELIDFTGVLKS--WNNSASSQVCSGWAGIKC-LRGQVVAI 99

Query:    67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLR-IQAYYYGFTGSIPSDIXXXXXXXXXXXXX 125
              L W  +      ++ QL         SLR +  +     GS+P  +             
Sbjct:   100 QLPWKGLGGTISEKIGQLG--------SLRKLSLHNNVIAGSVPRSLGYLKSLRGVYLFN 151

Query:   126 XXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN------- 178
                 G+IP ++GN   L +LDL +N LTG IP +L   T L  L+L   S+         
Sbjct:   152 NRLSGSIPVSLGNCPLLQNLDLSSNQLTGAIPPSLTESTRLYRLNLSFNSLSGPLPVSVA 211

Query:   179 ----LTWLDISNNKIEGSIPGELTELSRP-DCLSLSANKLSGPVPFSNKQLSTMYIVRLS 233
                 LT+LD+ +N + GSIP      S P   L+L  N+ SG VP S  + S +  V +S
Sbjct:   212 RSYTLTFLDLQHNNLSGSIPDFFVNGSHPLKTLNLDHNRFSGAVPVSLCKHSLLEEVSIS 271

Query:   234 PNKGLGS 240
              N+  GS
Sbjct:   272 HNQLSGS 278

GO:0004672 "protein kinase activity" evidence=IEA;NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016020 "membrane" evidence=NAS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0008283 "cell proliferation" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 8.5e-15, P = 8.5e-15
 Identities = 60/184 (32%), Positives = 92/184 (50%)

Query:    68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDIXXXXXXXXXXXXXXX 127
             L ++D+ +N              NL++L +        GSIPS+I               
Sbjct:   144 LEYFDLSINQLVGEIPPELGDLSNLDTLHLVENK--LNGSIPSEIGRLTKVTEIAIYDNL 201

Query:   128 XXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-------KVTS----M 176
               G IPS+ GNL  LV+L L  N+L+G IPS +  L NL+ L L       K+ S    +
Sbjct:   202 LTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNL 261

Query:   177 KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
             KN+T L++  N++ G IP E+  ++  D LSL  NKL+GP+P +   + T+ ++ L  N+
Sbjct:   262 KNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQ 321

Query:   237 GLGS 240
               GS
Sbjct:   322 LNGS 325

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 66/209 (31%), Positives = 100/209 (47%)

Query:    47 SDHCKWIGITCNS-AGSIIGLNL--SWYDVDLNAQAQLSQL-NFSCFPNLESLRIQAYYY 102
             SD C W GITC++  G +I ++L  S      ++ + LS L NF     L+       Y 
Sbjct:    67 SDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLD-----LSYN 121

Query:   103 GFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR 162
               +G I S I                 G IPS++GNL +L  L L +NN  G IPS+L  
Sbjct:   122 HLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGN 181

Query:   163 LTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSAN 211
             L+ L +LDL              S+  L+ L + NNK+ G++P E+  L++   +SLS N
Sbjct:   182 LSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHN 241

Query:   212 KLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
             + +G +P +   LS +     S N  +G+
Sbjct:   242 QFTGTLPPNITSLSILESFSASGNNFVGT 270

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020917001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (665 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 63/196 (32%), Positives = 107/196 (54%), Gaps = 21/196 (10%)

Query: 44  NYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYG 103
           N S+D C W GITCN++  ++ ++LS      N   ++S   F   P ++++ +      
Sbjct: 52  NSSADVCLWQGITCNNSSRVVSIDLS----GKNISGKISSAIFR-LPYIQTINLSNN--Q 104

Query: 104 FTGSIPSDISALS-KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR 162
            +G IP DI   S  L+ L+LS N  +G+IP   G++ NL  LDL NN L+G IP+ +  
Sbjct: 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS 162

Query: 163 LTNLKYLDL-----------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSAN 211
            ++LK LDL            +T++ +L +L +++N++ G IP EL ++     + L  N
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 212 KLSGPVPFSNKQLSTM 227
            LSG +P+    L+++
Sbjct: 223 NLSGEIPYEIGGLTSL 238

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.1 bits (239), Expect = 8e-22
 Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 11/144 (7%)

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163
             G IP ++  +  L+ + L  N LSG IP  IG L +L HLDL  NNLTGPIPS+L  L
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 164 TNLKYLDL-----------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANK 212
            NL+YL L            + S++ L  LD+S+N + G IP  + +L   + L L +N 
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319

Query: 213 LSGPVPFSNKQLSTMYIVRLSPNK 236
            +G +P +   L  + +++L  NK
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNK 343

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.8 bits (233), Expect = 5e-21
 Identities = 56/146 (38%), Positives = 79/146 (54%), Gaps = 11/146 (7%)

Query: 101 YYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTL 160
           Y   +G IP +I  L+ L  LDL  N L+G IPS++GNL+NL +L L  N L+GPIP ++
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 161 ARLTNLKYLDLK-----------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLS 209
             L  L  LDL            V  ++NL  L + +N   G IP  LT L R   L L 
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 210 ANKLSGPVPFSNKQLSTMYIVRLSPN 235
           +NK SG +P +  + + + ++ LS N
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTN 366

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.0 bits (218), Expect = 4e-19
 Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 11/146 (7%)

Query: 105 TGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT 164
            G IP+ ++ L+ L+ L L+ N+L G IP  +G +++L  + LG NNL+G IP  +  LT
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 165 NLKYLDL-----------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213
           +L +LDL            + ++KNL +L +  NK+ G IP  +  L +   L LS N L
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 214 SGPVPFSNKQLSTMYIVRLSPNKGLG 239
           SG +P    QL  + I+ L  N   G
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTG 322

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 4e-17
 Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 91  NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150
           NLE L +  +   FTG IP  +++L +LQ+L L  N+ SG IP N+G   NL  LDL  N
Sbjct: 309 NLEILHL--FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 151 NLTGPIPSTLARLTNLKYLDLKVTSM-----------KNLTWLDISNNKIEGSIPGELTE 199
           NLTG IP  L    NL  L L   S+           ++L  + + +N   G +P E T+
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426

Query: 200 LSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG 239
           L     L +S N L G +      + ++ ++ L+ NK  G
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.4 bits (201), Expect = 6e-17
 Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 14/137 (10%)

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163
           F G +P D     +L+ LDLS N+ SG +P  +G+L  L+ L L  N L+G IP  L   
Sbjct: 464 FFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL--- 519

Query: 164 TNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQ 223
                     +S K L  LD+S+N++ G IP   +E+     L LS N+LSG +P +   
Sbjct: 520 ----------SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Query: 224 LSTMYIVRLSPNKGLGS 240
           + ++  V +S N   GS
Sbjct: 570 VESLVQVNISHNHLHGS 586

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 56/147 (38%), Positives = 69/147 (46%), Gaps = 11/147 (7%)

Query: 100 YYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPST 159
           Y    +G IP  I +L KL  LDLS N LSG IP  +  L+NL  L L +NN TG IP  
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 160 LARLTNLKYLDL-----------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSL 208
           L  L  L+ L L            +    NLT LD+S N + G IP  L        L L
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387

Query: 209 SANKLSGPVPFSNKQLSTMYIVRLSPN 235
            +N L G +P S     ++  VRL  N
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDN 414

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 13/117 (11%)

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163
           F+G++P  + +LS+L  L LS N+LSG IP  + + + LV LDL +N L+G IP++ +  
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS-- 544

Query: 164 TNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
                       M  L+ LD+S N++ G IP  L  +     +++S N L G +P +
Sbjct: 545 -----------EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.5 bits (178), Expect = 4e-14
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 13/95 (13%)

Query: 103 GFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR 162
           G  G IP+DIS L  LQ ++LS N + G IP ++G++ +L  LDL  N+  G IP +L +
Sbjct: 429 GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 163 LTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGEL 197
           LT+L+ L+L             + N + G +P  L
Sbjct: 489 LTSLRILNL-------------NGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 14/157 (8%)

Query: 91  NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150
           +L  +R+Q     F+G +PS+ + L  +  LD+S N L G I S   ++ +L  L L  N
Sbjct: 405 SLRRVRLQDN--SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 151 NLTGPIPSTLARLTNLKYLDL-----------KVTSMKNLTWLDISNNKIEGSIPGELTE 199
              G +P        L+ LDL           K+ S+  L  L +S NK+ G IP EL+ 
Sbjct: 463 KFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521

Query: 200 LSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
             +   L LS N+LSG +P S  ++  +  + LS N+
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 13/98 (13%)

Query: 121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLT 180
           L L    L G IP++I  LR+L  ++L  N++ G IP +L  +T+L+ LDL         
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL--------- 473

Query: 181 WLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP 218
               S N   GSIP  L +L+    L+L+ N LSG VP
Sbjct: 474 ----SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 7e-10
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163
            +G IP+  S +  L  LDLS N+LSG IP N+GN+ +LV +++ +N+L G +PST A L
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 14/127 (11%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
            +P  +S LS L  LDLS N++S  +P  I  L  L  LDL NN++   + S+L+ L NL
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL 234

Query: 167 KYLDLK----------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP 216
             L+L           + ++ NL  LD+SNN+I  S    L  L+    L LS N LS  
Sbjct: 235 SGLELSNNKLEDLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNA 292

Query: 217 VPFSNKQ 223
           +P     
Sbjct: 293 LPLIALL 299

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 13/91 (14%)

Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPD 204
           L L N  L G IP+ +++L +L+ ++L             S N I G+IP  L  ++  +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINL-------------SGNSIRGNIPPSLGSITSLE 469

Query: 205 CLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
            L LS N  +G +P S  QL+++ I+ L+ N
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 24/55 (43%), Positives = 29/55 (52%)

Query: 117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171
            L+ LDLS NRL+         L NL  LDL  NNLT   P   + L +L+ LDL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 141 NLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS-----------MKNLTWLDISNNKI 189
           NL  LDL NN LT         L NLK LDL   +           + +L  LD+S N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 41/207 (19%)

Query: 107 SIPSDISAL-SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT------------ 153
            IP  I  L S L+ LDLS N++  ++PS + NL NL +LDL  N+L+            
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188

Query: 154 ----------GPIPSTLARLTNLKYLDLK-------VTSMKNLTW---LDISNNKIEGSI 193
                       +P  +  L+ L+ LDL        ++S+ NL     L++SNNK+E  +
Sbjct: 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DL 247

Query: 194 PGELTELSRPDCLSLSANKLSGPVPFSNKQ------LSTMYIVRLSPNKGLGSNFIIVLA 247
           P  +  LS  + L LS N++S      +        LS   +    P   L    + +L 
Sbjct: 248 PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307

Query: 248 CLLAVKRKYKKPILKANATNRIDVFSI 274
            LL   +  +  +      N I     
Sbjct: 308 NLLLTLKALELKLNSILLNNNILSNGE 334

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 84  LNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIG 137
            +     +LE L +   Y  F GSIP  +  L+ L++L+L+ N LSG +P+ +G
Sbjct: 460 PSLGSITSLEVLDLS--YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 20/130 (15%)

Query: 88  CFPNLESLRIQAYYYGFTG----SIPSDISALSK-------LQLLDLSLNRLSGTIPSNI 136
              N+ +LR+  +   FTG     + S++  L K       LQ +DLS N      P  +
Sbjct: 53  VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEEL 112

Query: 137 GNL----RNLVHLDLGNNNLTGPIP-STLAR-LTNLKYLDLKVTSMKNLTWLDISNNKIE 190
           G+L     +LVHL L NN L GPI    + + L +L Y   K      L  +    N++E
Sbjct: 113 GDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNK-KAADKPKLEVVICGRNRLE 170

Query: 191 GSIPGELTEL 200
            +   EL+  
Sbjct: 171 -NGSKELSAA 179

Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.71
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.56
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.54
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.34
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.31
PLN03150	623	hypothetical protein; Provisional	99.31
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.3
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.29
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.27
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.2
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.15
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.74
KOG1187	361	consensus Serine/threonine protein kinase [Signal	98.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.05
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.71
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.59
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.43
PRK15386	426	type III secretion protein GogB; Provisional	97.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.13
PRK15386	426	type III secretion protein GogB; Provisional	97.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.99
KOG3653	534	consensus Transforming growth factor beta/activin	96.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.8
PLN03224	507	probable serine/threonine protein kinase; Provisio	95.51
KOG2052	513	consensus Activin A type IB receptor, serine/threo	95.41
PTZ00284	467	protein kinase; Provisional	95.21
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	95.06
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	94.99
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	94.8
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.46
KOG0192	362	consensus Tyrosine kinase specific for activated (	93.95
KOG0605	550	consensus NDR and related serine/threonine kinases	93.94
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.9
smart00090	237	RIO RIO-like kinase.	93.87
PTZ00283	496	serine/threonine protein kinase; Provisional	93.87
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	93.75
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	93.61
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	93.58
PLN00034	353	mitogen-activated protein kinase kinase; Provision	93.57
PTZ00036	440	glycogen synthase kinase; Provisional	93.52
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	93.22
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	93.02
KOG4308	478	consensus LRR-containing protein [Function unknown	93.02
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	92.83
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	92.66
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	92.19
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.19
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	91.77
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	91.53
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	90.94
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	90.73
PHA03209	357	serine/threonine kinase US3; Provisional	90.67
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	90.58
KOG4308	478	consensus LRR-containing protein [Function unknown	90.51
smart00370	26	LRR Leucine-rich repeats, outliers.	90.15
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.97
KOG0694	694	consensus Serine/threonine protein kinase [Signal	89.67
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	89.63
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.55
smart00370	26	LRR Leucine-rich repeats, outliers.	89.55
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	89.3
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	89.17
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	89.07
PHA03212	391	serine/threonine kinase US3; Provisional	88.51
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	88.36
KOG0577	948	consensus Serine/threonine protein kinase [Signal	87.95
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	86.93
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.87
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	86.83
PHA03211	461	serine/threonine kinase US3; Provisional	86.24
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.77
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	84.65
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	84.55
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	84.07
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	83.54
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	83.35
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.53
PHA03207	392	serine/threonine kinase US3; Provisional	81.47
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	81.24

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=6.2e-25  Score=227.08  Aligned_cols=209  Identities=36%  Similarity=0.588  Sum_probs=144.2

Q ss_pred             CHHHHHHHHcC------CCCCCCCCCCCCCCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEE
Q 045233           23 IQLETKALLDT------GWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLR   96 (325)
Q Consensus        23 ~~~~~~~ll~~------~~~~~~~W~~~~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~   96 (325)
                      .+.|+.+|+.+      +.....+|  +...+||.|.||+|+..++|+.+++....+...     ....+..+++|+.|+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w--~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~-----~~~~~~~l~~L~~L~   99 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNW--NSSADVCLWQGITCNNSSRVVSIDLSGKNISGK-----ISSAIFRLPYIQTIN   99 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCC--CCCCCCCcCcceecCCCCcEEEEEecCCCcccc-----CChHHhCCCCCCEEE
Confidence            55788899864      23346778  456789999999999888999998875433221     122344455555555


Q ss_pred             eccccCcCCCCCcccc-----------------------cCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC
Q 045233           97 IQAYYYGFTGSIPSDI-----------------------SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT  153 (325)
Q Consensus        97 l~~~~n~~~~~~p~~l-----------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  153 (325)
                      +  ++|.+.+.+|..+                       ..+++|++|++++|.+++.+|..++++++|++|++++|.+.
T Consensus       100 L--s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113        100 L--SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             C--CCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            5  4444444444332                       23455566666666666666777777777777777777777


Q ss_pred             CcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCccc
Q 045233          154 GPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNK  222 (325)
Q Consensus       154 ~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  222 (325)
                      +.+|..+.++++|++|++++|           ++++|++|++++|++++.+|..++++++|++|++++|.+++.+|..++
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            777777777777777777766           345777777887777777777777788888888888887777777778


Q ss_pred             CCCCCcEEEccCCCCCch
Q 045233          223 QLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       223 ~l~~L~~L~l~~N~~~~~  240 (325)
                      .+++|+.|++++|.+.+.
T Consensus       258 ~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             CCCCCCEEECcCCeeecc
Confidence            888888888888776653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=2.5e-24  Score=222.53  Aligned_cols=234  Identities=26%  Similarity=0.346  Sum_probs=150.9

Q ss_pred             ccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCC
Q 045233           85 NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT  164 (325)
Q Consensus        85 ~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  164 (325)
                      .+..++.|+.|++  ++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++++.+|..+..++
T Consensus       423 ~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~  499 (968)
T PLN00113        423 EFTKLPLVYFLDI--SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS  499 (968)
T ss_pred             hHhcCCCCCEEEC--cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh
Confidence            3455556666666  5566666555555556666666666666665555543 346677777777777777777788888


Q ss_pred             CCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEcc
Q 045233          165 NLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLS  233 (325)
Q Consensus       165 ~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~  233 (325)
                      +|+.|++++|           .+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.++++
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  579 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS  579 (968)
T ss_pred             ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence            8888888877           45678888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCchH----------------------------------------------------H-HHHHHHHHHHHHhhcCcc
Q 045233          234 PNKGLGSN----------------------------------------------------F-IIVLACLLAVKRKYKKPI  260 (325)
Q Consensus       234 ~N~~~~~~----------------------------------------------------~-~~~~~~~~~~~~~~~~~~  260 (325)
                      +|++.+..                                                    . ++++++.+.++++++...
T Consensus       580 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (968)
T PLN00113        580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLE  659 (968)
T ss_pred             CCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            87764310                                                    0 000111111222222111


Q ss_pred             ccccc--cCccceeeee-cCCccccHHHHHHHhcCCcceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          261 LKANA--TNRIDVFSIW-NYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       261 ~~~~~--~~~~~~~~~~-~~~~~~~~~~l~~~t~nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+...  ...+....+. ...+.++++++..... ...+||+|+||.||+|+..  .+|..||||..
T Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ig~G~~g~Vy~~~~~--~~~~~vavK~~  723 (968)
T PLN00113        660 LKRVENEDGTWELQFFDSKVSKSITINDILSSLK-EENVISRGKKGASYKGKSI--KNGMQFVVKEI  723 (968)
T ss_pred             ccccccccccccccccccccchhhhHHHHHhhCC-cccEEccCCCeeEEEEEEC--CCCcEEEEEEc
Confidence            11100  0111111111 1123467777765432 3478999999999999985  78999999964

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.71  E-value=2.6e-18  Score=158.80  Aligned_cols=167  Identities=23%  Similarity=0.226  Sum_probs=96.2

Q ss_pred             ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233           70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN  149 (325)
Q Consensus        70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  149 (325)
                      .+|++.|.+..++...|..-.++++|+|  ++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~L--a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNL--ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEee--ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence            3455555555555555554455555555  55555444444455555555555555555533334444455555555555


Q ss_pred             Cc------------------------CCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCc
Q 045233          150 NN------------------------LTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIP  194 (325)
Q Consensus       150 N~------------------------l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p  194 (325)
                      |+                        +...-...|..+.++++|+|+.|           +++.|+.|+||+|.|...-+
T Consensus       231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            54                        44333344555555555555555           45667777777777776666


Q ss_pred             hhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          195 GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      +.+...++|++|+|++|+|+...+.+|..+..|+.|+|+.|.+.
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence            67777777777777777777666666666666777777766654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.69  E-value=7.2e-18  Score=155.95  Aligned_cols=165  Identities=21%  Similarity=0.217  Sum_probs=118.7

Q ss_pred             cCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcC
Q 045233           73 VDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNL  152 (325)
Q Consensus        73 ~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  152 (325)
                      +..|.+..+....|.++.++++|+|  ..|++...-...+.+++.|+.|++|+|.|....++.+...++|++|+|++|+|
T Consensus       252 lqrN~I~kL~DG~Fy~l~kme~l~L--~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  252 LQRNDISKLDDGAFYGLEKMEHLNL--ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             hhhcCcccccCcceeeecccceeec--ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence            3444455555555666666666666  66666655555666777777777777777777777777777888888888888


Q ss_pred             CCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCc---hhhhCCCCCCEEECCCCcCCCCCC
Q 045233          153 TGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIP---GELTELSRPDCLSLSANKLSGPVP  218 (325)
Q Consensus       153 ~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p  218 (325)
                      +...+..|..+..|+.|+|++|           .+++|+.|||++|.++..+.   ..|.++++|+.|++.+|+|.....
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k  409 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK  409 (873)
T ss_pred             ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence            7666667777777777777777           45678888888888776543   356778888888888888885555


Q ss_pred             CcccCCCCCcEEEccCCCCCc
Q 045233          219 FSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       219 ~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      .+|..+.+|++|+|.+|.+..
T Consensus       410 rAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  410 RAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             hhhccCcccceecCCCCccee
Confidence            678888888888888877643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.64  E-value=2e-17  Score=146.70  Aligned_cols=168  Identities=24%  Similarity=0.217  Sum_probs=130.9

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEeccc-CCCCCCCchhhcCCcccceeeccc
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL-NRLSGTIPSNIGNLRNLVHLDLGN  149 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~  149 (325)
                      ++++.|.+..+++..|..+++|+.|||  ++|+++.+-|++|.++.+|.+|-+-+ |+|+......|+++..|+.|.+.-
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdL--S~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDL--SKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecc--cccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            455689999999999999999999999  99999999999999999988776655 999966667788888888888888


Q ss_pred             CcCCCcCchhccCCCCCcEEEcCcC-------------------------------------------------------
Q 045233          150 NNLTGPIPSTLARLTNLKYLDLKVT-------------------------------------------------------  174 (325)
Q Consensus       150 N~l~~~~p~~~~~l~~L~~L~l~~n-------------------------------------------------------  174 (325)
                      |++.-...+.|..+++|..|.+-.|                                                       
T Consensus       150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~  229 (498)
T KOG4237|consen  150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY  229 (498)
T ss_pred             hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence            8887666667777777766666544                                                       


Q ss_pred             ------------------------------------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCc
Q 045233          175 ------------------------------------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANK  212 (325)
Q Consensus       175 ------------------------------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~  212 (325)
                                                                .+++|+.|+|++|+++++.+.+|.++..+++|.|..|+
T Consensus       230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~  309 (498)
T KOG4237|consen  230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK  309 (498)
T ss_pred             HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence                                                      56799999999999998878777777666666666666


Q ss_pred             CCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          213 LSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       213 l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      |.......|..+..|+.|+|++|++++.
T Consensus       310 l~~v~~~~f~~ls~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  310 LEFVSSGMFQGLSGLKTLSLYDNQITTV  337 (498)
T ss_pred             HHHHHHHhhhccccceeeeecCCeeEEE
Confidence            6544444555666666666666666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=2.8e-18  Score=136.30  Aligned_cols=148  Identities=28%  Similarity=0.453  Sum_probs=75.4

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      +.++.|.+..++. .++.+.+|+.|++  .+|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|+.|||++|
T Consensus        38 LtLSHNKl~~vpp-nia~l~nlevln~--~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   38 LTLSHNKLTVVPP-NIAELKNLEVLNL--SNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhcccCceeecCC-cHHHhhhhhhhhc--ccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccc
Confidence            3344444444433 2444555555555  444443 34445555555555555555554 45555555555555555555


Q ss_pred             cCC-CcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcE
Q 045233          151 NLT-GPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI  229 (325)
Q Consensus       151 ~l~-~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  229 (325)
                      ++. ..+|..|..++.|+.             |+|++|.+. .+|..++.+++|+.|.+.+|.+- ..|..++.++.|+.
T Consensus       113 nl~e~~lpgnff~m~tlra-------------lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre  177 (264)
T KOG0617|consen  113 NLNENSLPGNFFYMTTLRA-------------LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE  177 (264)
T ss_pred             ccccccCCcchhHHHHHHH-------------HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence            554 234444444444444             455555555 45555555555555555555554 44555555555555


Q ss_pred             EEccCCCCC
Q 045233          230 VRLSPNKGL  238 (325)
Q Consensus       230 L~l~~N~~~  238 (325)
                      |++.+|+++
T Consensus       178 lhiqgnrl~  186 (264)
T KOG0617|consen  178 LHIQGNRLT  186 (264)
T ss_pred             Hhcccceee
Confidence            555555544

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=4.1e-15  Score=146.12  Aligned_cols=152  Identities=30%  Similarity=0.482  Sum_probs=110.6

Q ss_pred             cCCCHHHHHHHHcCC--CCC--CCCCCCCCCCCCc-----cceeeEeCCCCCeeEeeccccccCCccccccCccccCCCC
Q 045233           20 FSPIQLETKALLDTG--WWN--SSFWMANYSSDHC-----KWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFP   90 (325)
Q Consensus        20 ~~~~~~~~~~ll~~~--~~~--~~~W~~~~~~~~C-----~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~   90 (325)
                      .+..+.|..+|+..+  +..  ..+|.+    |+|     .|.||.|+....                        ....
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~~~W~g----~~C~p~~~~w~Gv~C~~~~~------------------------~~~~  418 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLRFGWNG----DPCVPQQHPWSGADCQFDST------------------------KGKW  418 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcccCCCCC----CCCCCcccccccceeeccCC------------------------CCce
Confidence            344566778887532  221  237842    444     799999953211                        0011


Q ss_pred             CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEE
Q 045233           91 NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLD  170 (325)
Q Consensus        91 ~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  170 (325)
                      .++.|+|  ++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.  
T Consensus       419 ~v~~L~L--~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~--  494 (623)
T PLN03150        419 FIDGLGL--DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI--  494 (623)
T ss_pred             EEEEEEC--CCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE--
Confidence            3466777  788888888888889999999999999998889988999999999999999999888888877665544  


Q ss_pred             cCcCCCCCCcEEEccCCcCCCCCchhhhCC-CCCCEEECCCCcCC
Q 045233          171 LKVTSMKNLTWLDISNNKIEGSIPGELTEL-SRPDCLSLSANKLS  214 (325)
Q Consensus       171 l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~  214 (325)
                                 |+|++|+++|.+|..+..+ .++..+++.+|...
T Consensus       495 -----------L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        495 -----------LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             -----------EECcCCcccccCChHHhhccccCceEEecCCccc
Confidence                       5677788888888887764 46678888888744

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-17  Score=131.20  Aligned_cols=155  Identities=26%  Similarity=0.464  Sum_probs=128.8

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCC-CCCchhhcCCccccee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS-GTIPSNIGNLRNLVHL  145 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L  145 (325)
                      +++.+++..|.+..++. .++.+++|+.|++  .-|++. .+|..|+.++.|+.||+.+|++. ..+|..|..++.|+.|
T Consensus        57 nlevln~~nnqie~lp~-~issl~klr~lnv--gmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen   57 NLEVLNLSNNQIEELPT-SISSLPKLRILNV--GMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             hhhhhhcccchhhhcCh-hhhhchhhhheec--chhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence            56677888898888876 5889999999999  666654 68999999999999999999997 5789999999999999


Q ss_pred             ecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCC
Q 045233          146 DLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLS  225 (325)
Q Consensus       146 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  225 (325)
                      +|+.|.+. .+|+.++++++|+.|             .+.+|.+- .+|..++.++.|++|.+.+|.++ .+|..++.+.
T Consensus       133 yl~dndfe-~lp~dvg~lt~lqil-------------~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  133 YLGDNDFE-ILPPDVGKLTNLQIL-------------SLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             HhcCCCcc-cCChhhhhhcceeEE-------------eeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence            99999999 899999988777665             55566666 68999999999999999999999 6666666654


Q ss_pred             ---CCcEEEccCCCCCchH
Q 045233          226 ---TMYIVRLSPNKGLGSN  241 (325)
Q Consensus       226 ---~L~~L~l~~N~~~~~~  241 (325)
                         +-+.+.+..|++....
T Consensus       197 l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  197 LVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             hhhhHHHHhhhhCCCCChH
Confidence               3356677888887543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.56  E-value=3.9e-16  Score=145.77  Aligned_cols=147  Identities=27%  Similarity=0.372  Sum_probs=88.5

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +-.+..|+.|||  ++|.+. +.|..+..-+++..|+||+|+|..+.-+.|-+++.|-+||||+|++. .+|+.+..+..
T Consensus        99 iF~l~dLt~lDL--ShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~  174 (1255)
T KOG0444|consen   99 IFRLKDLTILDL--SHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSM  174 (1255)
T ss_pred             hcccccceeeec--chhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhh
Confidence            445666666666  566554 45556666666666666666666322233556666666666666666 56666666666


Q ss_pred             CcEEEcCcC------------------------------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECC
Q 045233          166 LKYLDLKVT------------------------------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLS  209 (325)
Q Consensus       166 L~~L~l~~n------------------------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  209 (325)
                      |+.|.|++|                                    .+.+|..+|+|.|.+. .+|+.+..+++|+.|+|+
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS  253 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS  253 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence            666666666                                    2345666666667666 666677777777777777


Q ss_pred             CCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          210 ANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       210 ~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      +|+|+ .+....+...+|++|+++.|+++
T Consensus       254 ~N~it-eL~~~~~~W~~lEtLNlSrNQLt  281 (1255)
T KOG0444|consen  254 GNKIT-ELNMTEGEWENLETLNLSRNQLT  281 (1255)
T ss_pred             cCcee-eeeccHHHHhhhhhhccccchhc
Confidence            77666 22333344444555555555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.56  E-value=7.3e-17  Score=143.44  Aligned_cols=179  Identities=25%  Similarity=0.325  Sum_probs=153.1

Q ss_pred             ccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCC
Q 045233           50 CKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS  129 (325)
Q Consensus        50 C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~  129 (325)
                      |+.....|-..+--..++++.++...|.+..++. .+..+..|..+++  .+|.+....|..+. ++.|++||...|-++
T Consensus       121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~--~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  121 CSSNELKELPDSIGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDL--EGNKLKALPENHIA-MKRLKHLDCNSNLLE  196 (565)
T ss_pred             ccccceeecCchHHHHhhhhhhhccccccccCch-HHHHHHHHHHhhc--cccchhhCCHHHHH-HHHHHhcccchhhhh
Confidence            4443333333334455678888899999888876 4667888899999  88988876665555 999999999999998


Q ss_pred             CCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhh
Q 045233          130 GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELT  198 (325)
Q Consensus       130 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~  198 (325)
                       .+|+.++.+.+|+.|+|..|++. .+| .|.++..|++|+++.|           +++++..|||.+|+++ ..|+.+.
T Consensus       197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence             89999999999999999999999 788 7999999999999988           6789999999999999 8899999


Q ss_pred             CCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          199 ELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      -+.+|.+||+++|.|+ ..|.+++++ .|+.|.+.||++-
T Consensus       273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence            9999999999999999 568889999 9999999999974

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.54  E-value=2e-16  Score=147.63  Aligned_cols=162  Identities=29%  Similarity=0.418  Sum_probs=125.4

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCC---------------------
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS---------------------  129 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~---------------------  129 (325)
                      +++++|.+..++...|.++..|-.|||  ++|++. .+|+.+..+..|++|+|++|.+.                     
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDL--S~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDL--SNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhcc--ccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence            567788888888888888888888999  777765 56777777888888888887643                     


Q ss_pred             ----CCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC----------CCCcEEEccCCcCCCCCch
Q 045233          130 ----GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM----------KNLTWLDISNNKIEGSIPG  195 (325)
Q Consensus       130 ----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l----------~~L~~L~Ls~n~l~~~~p~  195 (325)
                          ..+|.++..+.+|..+|+|.|++. .+|+.+.++.+|+.|+|++|.+          .+|+.|++|+|+++ .+|+
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~  285 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPD  285 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchH
Confidence                235666777788888899999988 8888888999999999999844          36788899999988 7888


Q ss_pred             hhhCCCCCCEEECCCCcCCC-CCCCcccCCCCCcEEEccCCCC
Q 045233          196 ELTELSRPDCLSLSANKLSG-PVPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       196 ~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~N~~  237 (325)
                      ++..+++|+.|.+.+|+++- -+|..++++..|+++..++|.+
T Consensus       286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence            88888888888888888763 3566666666666665555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.51  E-value=5.4e-15  Score=131.68  Aligned_cols=98  Identities=31%  Similarity=0.474  Sum_probs=78.9

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCccc-ccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSD-ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      ..+++..|.+..++  .|.+++.|.+|.+  ..|.+. .+|.+ ...++++..||+..|++. +.|+.+.-+.+|++||+
T Consensus       209 ~~LyL~~Nki~~lP--ef~gcs~L~Elh~--g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  209 ELLYLRRNKIRFLP--EFPGCSLLKELHV--GENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDL  282 (565)
T ss_pred             HHHHhhhcccccCC--CCCccHHHHHHHh--cccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcc
Confidence            34566677777777  4788888888888  566555 44544 458899999999999998 88999999999999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT  174 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n  174 (325)
                      |+|.++ .+|.+++++ +|+.|.+.+|
T Consensus       283 SNN~is-~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  283 SNNDIS-SLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             cCCccc-cCCcccccc-eeeehhhcCC
Confidence            999999 678889998 8999988887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=1.6e-12  Score=128.72  Aligned_cols=75  Identities=28%  Similarity=0.220  Sum_probs=58.6

Q ss_pred             CCCcEEEcCcCCC-------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233          164 TNLKYLDLKVTSM-------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       164 ~~L~~L~l~~n~l-------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~  236 (325)
                      .+|+.|++++|.+       ++|+.|++++|+++ .+|..   ..+|+.|++++|+|+ .+|..+..+++|..+++++|+
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             cccceEEecCCcccCCCCcccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence            3577788877743       35778888888888 45643   246778899999998 678889999999999999999


Q ss_pred             CCchHHH
Q 045233          237 GLGSNFI  243 (325)
Q Consensus       237 ~~~~~~~  243 (325)
                      +++....
T Consensus       457 Ls~~~~~  463 (788)
T PRK15387        457 LSERTLQ  463 (788)
T ss_pred             CCchHHH
Confidence            9976544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.34  E-value=3.2e-13  Score=122.37  Aligned_cols=151  Identities=25%  Similarity=0.261  Sum_probs=81.3

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCc---CCEEecccCCCCC----CCchhhcCC-cccceeecccCcCCCc--
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSK---LQLLDLSLNRLSG----TIPSNIGNL-RNLVHLDLGNNNLTGP--  155 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~--  155 (325)
                      +..+++|+.|++  ++|.+.+..+..+..+..   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.  
T Consensus        77 l~~~~~L~~L~l--~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          77 LTKGCGLQELDL--SDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHhcCceeEEEc--cCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            444566666666  566665544444444433   6666666666652    222334444 5666666666666632  


Q ss_pred             --CchhccCCCCCcEEEcCcCCC---------------CCCcEEEccCCcCCCCC----chhhhCCCCCCEEECCCCcCC
Q 045233          156 --IPSTLARLTNLKYLDLKVTSM---------------KNLTWLDISNNKIEGSI----PGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       156 --~p~~~~~l~~L~~L~l~~n~l---------------~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~  214 (325)
                        ++..+..+++|+.|++++|.+               ++|++|++++|.+++..    +..+..+++|++|++++|+++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence              223445555666666666632               25666666666665332    233445566666666666665


Q ss_pred             CCCCCccc-----CCCCCcEEEccCCCCC
Q 045233          215 GPVPFSNK-----QLSTMYIVRLSPNKGL  238 (325)
Q Consensus       215 ~~~p~~~~-----~l~~L~~L~l~~N~~~  238 (325)
                      +.....+.     ..+.|+.|++++|.++
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            42111111     1356666666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.31  E-value=1.9e-11  Score=128.33  Aligned_cols=99  Identities=22%  Similarity=0.256  Sum_probs=58.2

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      +++..+.+..++. .+..+++|+.|++  +++...+.+| .++.+++|++|++++|.....+|..+.++++|+.|++++|
T Consensus       616 L~L~~s~l~~L~~-~~~~l~~Lk~L~L--s~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        616 LQMQGSKLEKLWD-GVHSLTGLRNIDL--RGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             EECcCcccccccc-ccccCCCCCEEEC--CCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            4444444444433 2455677777777  5554444555 3666677777777776655566777777777777777765


Q ss_pred             cCCCcCchhccCCCCCcEEEcCcC
Q 045233          151 NLTGPIPSTLARLTNLKYLDLKVT  174 (325)
Q Consensus       151 ~l~~~~p~~~~~l~~L~~L~l~~n  174 (325)
                      .....+|..+ ++++|+.|++++|
T Consensus       692 ~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        692 ENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCcCccCCcC-CCCCCCEEeCCCC
Confidence            4444555543 4555555555544

syringae 6; Provisional

>PLN03150 hypothetical protein; Provisional

Probab=99.31  E-value=5.2e-12  Score=124.34  Aligned_cols=110  Identities=35%  Similarity=0.526  Sum_probs=92.9

Q ss_pred             CCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhh
Q 045233          118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGEL  197 (325)
Q Consensus       118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~  197 (325)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|+++|.+|+.+..+++|             +.|+|++|++++.+|+.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L-------------~~LdLs~N~lsg~iP~~l  486 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL-------------EVLDLSYNSFNGSIPESL  486 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-------------CEEECCCCCCCCCCchHH
Confidence            6778888888888888888888888888888888888888877766554             556788899999999999


Q ss_pred             hCCCCCCEEECCCCcCCCCCCCcccCC-CCCcEEEccCCCCCch
Q 045233          198 TELSRPDCLSLSANKLSGPVPFSNKQL-STMYIVRLSPNKGLGS  240 (325)
Q Consensus       198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~l~~N~~~~~  240 (325)
                      +++++|+.|+|++|++++.+|..++.. .++..+++.+|+..|.
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence            999999999999999999999887764 4677888988876553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.30  E-value=1.2e-12  Score=118.70  Aligned_cols=151  Identities=25%  Similarity=0.258  Sum_probs=74.4

Q ss_pred             CCCCCCCEEEeccccCcCCC------CCcccccCCCcCCEEecccCCCCCCCchhhcCCcc---cceeecccCcCCC---
Q 045233           87 SCFPNLESLRIQAYYYGFTG------SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRN---LVHLDLGNNNLTG---  154 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~---  154 (325)
                      ...++++++++  +++.+.+      .++..+..+++|++|++++|.+.+..+..+..+.+   |++|++++|++++   
T Consensus        48 ~~~~~l~~l~l--~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~  125 (319)
T cd00116          48 RPQPSLKELCL--SLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL  125 (319)
T ss_pred             hhCCCceEEec--cccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence            34455555555  4444331      12233444556666666666555444444444433   6666666665552   


Q ss_pred             -cCchhccCC-CCCcEEEcCcCCC---------------CCCcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCcC
Q 045233          155 -PIPSTLARL-TNLKYLDLKVTSM---------------KNLTWLDISNNKIEGS----IPGELTELSRPDCLSLSANKL  213 (325)
Q Consensus       155 -~~p~~~~~l-~~L~~L~l~~n~l---------------~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l  213 (325)
                       .+...+..+ ++|+.|++++|.+               ++|++|++++|.+++.    ++..+..+++|+.|++++|.+
T Consensus       126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence             122233444 5566666655522               2456666666655532    222334445566666666655


Q ss_pred             CCC----CCCcccCCCCCcEEEccCCCCCc
Q 045233          214 SGP----VPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       214 ~~~----~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      ++.    ++..+..+++|+.|++++|++..
T Consensus       206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         206 TDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             ChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            432    12233445556666666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.29  E-value=1.7e-11  Score=121.85  Aligned_cols=152  Identities=25%  Similarity=0.372  Sum_probs=84.6

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                      ..++++.|.+..++...   +++|+.|++  ++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  .+|++|+++
T Consensus       202 ~~L~Ls~N~LtsLP~~l---~~nL~~L~L--s~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        202 TTLILDNNELKSLPENL---QGNIKTLYA--NSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             cEEEecCCCCCcCChhh---ccCCCEEEC--CCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            33444555555544322   246677777  666655 3444332  34566666666655 4454432  355666666


Q ss_pred             cCcCCCcCchhccCCCCCcEEEcCcCCC-----------------------------CCCcEEEccCCcCCCCCchhhhC
Q 045233          149 NNNLTGPIPSTLARLTNLKYLDLKVTSM-----------------------------KNLTWLDISNNKIEGSIPGELTE  199 (325)
Q Consensus       149 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l-----------------------------~~L~~L~Ls~n~l~~~~p~~~~~  199 (325)
                      +|+++ .+|..+.  ++|+.|++++|++                             ++|+.|++++|.+++ +|..+. 
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~-  345 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP-  345 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc-
Confidence            66665 3444332  3555555555522                             245555555555553 443332 


Q ss_pred             CCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          200 LSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       200 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                       ++|+.|++++|+|+ .+|..+  .++|+.|++++|.+...
T Consensus       346 -~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        346 -PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL  382 (754)
T ss_pred             -CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC
Confidence             57788888888877 455544  25788888888887643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.27  E-value=2.8e-13  Score=120.54  Aligned_cols=179  Identities=25%  Similarity=0.243  Sum_probs=134.5

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEecccc-CcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCccc----
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYY-YGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNL----  142 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L----  142 (325)
                      |..+|++.|.+..+.+..|.+++.|..|-+  .+ |+++......|.++..|+.|.+.-|.+.-...+.|..+++|    
T Consensus        93 LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvl--yg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLs  170 (498)
T KOG4237|consen   93 LRRLDLSKNNISFIAPDAFKGLASLLSLVL--YGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLS  170 (498)
T ss_pred             hceecccccchhhcChHhhhhhHhhhHHHh--hcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhc
Confidence            445888999999999999999998888777  55 77766555556666666666665555554444444444444    


Q ss_pred             --------------------ceeecccCcCC-------------------------------------------------
Q 045233          143 --------------------VHLDLGNNNLT-------------------------------------------------  153 (325)
Q Consensus       143 --------------------~~L~Ls~N~l~-------------------------------------------------  153 (325)
                                          +.+.+..|.+-                                                 
T Consensus       171 lyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es  250 (498)
T KOG4237|consen  171 LYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES  250 (498)
T ss_pred             ccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence                                44444444310                                                 


Q ss_pred             ------------CcCc-hhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECC
Q 045233          154 ------------GPIP-STLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLS  209 (325)
Q Consensus       154 ------------~~~p-~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  209 (325)
                                  +..| ..|.++++|+.|++++|           ....+++|.|..|++...-...|.++..|+.|+|.
T Consensus       251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~  330 (498)
T KOG4237|consen  251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY  330 (498)
T ss_pred             HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence                        0122 24788899999999999           45689999999999997777889999999999999


Q ss_pred             CCcCCCCCCCcccCCCCCcEEEccCCCCCchHHHHHHHH
Q 045233          210 ANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLAC  248 (325)
Q Consensus       210 ~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~  248 (325)
                      +|+|+...|.+|..+..|..|.+-.|++.|..-+....-
T Consensus       331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~  369 (498)
T KOG4237|consen  331 DNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE  369 (498)
T ss_pred             CCeeEEEecccccccceeeeeehccCcccCccchHHHHH
Confidence            999999899999999999999999999999766544433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.23  E-value=1.3e-11  Score=122.68  Aligned_cols=89  Identities=31%  Similarity=0.517  Sum_probs=45.3

Q ss_pred             cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC--------CCCcEEEccCCc
Q 045233          117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM--------KNLTWLDISNNK  188 (325)
Q Consensus       117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l--------~~L~~L~Ls~n~  188 (325)
                      +|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+  .++|+.|++++|.+        ++|+.|++++|+
T Consensus       284 sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~  357 (754)
T PRK15370        284 ELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQ  357 (754)
T ss_pred             CCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccCChhhcCcccEEECCCCC
Confidence            4555555555554 2332221  23444444444444 233222  24566666666632        356667777776


Q ss_pred             CCCCCchhhhCCCCCCEEECCCCcCC
Q 045233          189 IEGSIPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       189 l~~~~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      ++ .+|..+.  ++|+.|++++|+++
T Consensus       358 L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        358 IT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             CC-cCChhhc--CCcCEEECCCCcCC
Confidence            66 4554432  45666666666665

>PLN03210 Resistant to P

Probab=99.23  E-value=7.3e-11  Score=124.04  Aligned_cols=119  Identities=27%  Similarity=0.305  Sum_probs=101.3

Q ss_pred             CCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC--------CCCCCcEEEccC
Q 045233          115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT--------SMKNLTWLDISN  186 (325)
Q Consensus       115 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n--------~l~~L~~L~Ls~  186 (325)
                      .++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|        ..++|+.|+|++
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR  855 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence            3578899999998777899999999999999999986555788765 7899999999987        235799999999


Q ss_pred             CcCCCCCchhhhCCCCCCEEECCCCc-CCCCCCCcccCCCCCcEEEccCCC
Q 045233          187 NKIEGSIPGELTELSRPDCLSLSANK-LSGPVPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       187 n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N~  236 (325)
                      |.++ .+|..+..+++|+.|++++|+ +. .+|.....++.|+.++++++.
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            9998 789899999999999999854 55 577778889999999988875

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=4.9e-13  Score=123.96  Aligned_cols=164  Identities=31%  Similarity=0.448  Sum_probs=136.4

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      .|++.|....++. .+..|..|+.+.+  ..|.+. .+|..+.++..|++|||+.|+++ .+|..+..++ |+.|-+++|
T Consensus        80 aDlsrNR~~elp~-~~~~f~~Le~liL--y~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   80 ADLSRNRFSELPE-EACAFVSLESLIL--YHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhccccccccCch-HHHHHHHHHHHHH--Hhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            5566666666654 3555667777777  666665 57888999999999999999999 7888888887 899999999


Q ss_pred             cCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCc
Q 045233          151 NLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS  220 (325)
Q Consensus       151 ~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  220 (325)
                      +++ .+|+.++...+|..|+.+.|          .+.+|+.|.+..|++. .+|..+..+ .|..||++.|+++ .+|-.
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence            999 89999999999999999998          4567888999999999 667777755 5889999999999 78999


Q ss_pred             ccCCCCCcEEEccCCCCCchHHHH
Q 045233          221 NKQLSTMYIVRLSPNKGLGSNFII  244 (325)
Q Consensus       221 ~~~l~~L~~L~l~~N~~~~~~~~~  244 (325)
                      |.+++.|++|-|.+|++....+.+
T Consensus       230 fr~m~~Lq~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQSPPAQI  253 (722)
T ss_pred             hhhhhhheeeeeccCCCCCChHHH
Confidence            999999999999999998765543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.20  E-value=1.3e-12  Score=127.26  Aligned_cols=160  Identities=25%  Similarity=0.303  Sum_probs=105.5

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccc-------------------------cCCCcCCEEeccc
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-------------------------SALSKLQLLDLSL  125 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l-------------------------~~l~~L~~L~Ls~  125 (325)
                      +....|.+..++. ...+++.|+.|+|  ..|.+....+..+                         ..++.|+.|.+.+
T Consensus       292 l~~~~nel~yip~-~le~~~sL~tLdL--~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  292 LSAAYNELEYIPP-FLEGLKSLRTLDL--QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHhhhhhhhhCCC-cccccceeeeeee--hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            4444455444443 2445777777777  6665543211111                         1133466777777


Q ss_pred             CCCCCCCchhhcCCcccceeecccCcCCCcCc-hhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCc
Q 045233          126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIP-STLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIP  194 (325)
Q Consensus       126 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p  194 (325)
                      |.++...-+.+.++++|+.|+|++|++. .+| ..+.++..|+.|++++|          .++.|++|...+|++. ..|
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP  446 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP  446 (1081)
T ss_pred             Ccccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech
Confidence            8877666666777888888888888887 455 35677788888888888          3456777777788877 666


Q ss_pred             hhhhCCCCCCEEECCCCcCCCC-CCCcccCCCCCcEEEccCCCC
Q 045233          195 GELTELSRPDCLSLSANKLSGP-VPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~~  237 (325)
                       .+..++.|+.+|++.|+|+.. +|.. -..++|++||+++|.-
T Consensus       447 -e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  447 -ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             -hhhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCcc
Confidence             778888888888888888753 3332 2237888888888874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.15  E-value=7.1e-13  Score=128.93  Aligned_cols=146  Identities=29%  Similarity=0.336  Sum_probs=108.2

Q ss_pred             CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233           90 PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL  169 (325)
Q Consensus        90 ~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  169 (325)
                      .+|+++++  +.|.+++ +|+.+..+.+|+.++..+|++. .+|..+...++|++|.+.+|.+. -+|+...++.+|+.|
T Consensus       241 ~nl~~~di--s~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  241 LNLQYLDI--SHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL  315 (1081)
T ss_pred             ccceeeec--chhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence            46777777  6666664 4466777777777777777775 66777777777777777777776 566666667777777


Q ss_pred             EcCcC------------------------------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcC
Q 045233          170 DLKVT------------------------------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL  213 (325)
Q Consensus       170 ~l~~n------------------------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l  213 (325)
                      +|..|                                    .++.|+.|++.+|.+++..-+.+.++++|+.|+|++|+|
T Consensus       316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            77655                                    234677888888888887777888888999999999988


Q ss_pred             CCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          214 SGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       214 ~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      .......+.++..|+.|+++||++.-.
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~~L  422 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLTTL  422 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhhhh
Confidence            855556778888889999999987643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.14  E-value=7.2e-11  Score=117.06  Aligned_cols=116  Identities=26%  Similarity=0.304  Sum_probs=84.7

Q ss_pred             CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEE
Q 045233           91 NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLD  170 (325)
Q Consensus        91 ~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  170 (325)
                      +|+.|++  ++|.+++ +|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|..   .++|+.|+
T Consensus       343 ~Lq~LdL--S~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~Ld  408 (788)
T PRK15387        343 GLQELSV--SDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELM  408 (788)
T ss_pred             ccceEec--CCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEE
Confidence            4566666  5555553 3322   234555666666665 34432   246889999999998 46653   36799999


Q ss_pred             cCcCCCC-------CCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233          171 LKVTSMK-------NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN  221 (325)
Q Consensus       171 l~~n~l~-------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  221 (325)
                      +++|.+.       +|+.|++++|+++ .+|+.+.++++|+.++|++|++++..+..+
T Consensus       409 LS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        409 VSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            9999554       5788999999999 789999999999999999999998766554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=1e-10  Score=96.00  Aligned_cols=106  Identities=36%  Similarity=0.409  Sum_probs=26.2

Q ss_pred             CCcCCEEecccCCCCCCCchhhc-CCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCC
Q 045233          115 LSKLQLLDLSLNRLSGTIPSNIG-NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSI  193 (325)
Q Consensus       115 l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~  193 (325)
                      ..++++|+|++|.|+. + +.++ .+.+|+.|++++|.++ .++ .+..+             ++|+.|++++|.++. +
T Consensus        18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L-------------~~L~~L~L~~N~I~~-i   79 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGL-------------PRLKTLDLSNNRISS-I   79 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T-----------------TT--EEE--SS---S--
T ss_pred             cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccCh-------------hhhhhcccCCCCCCc-c
Confidence            3445566666666552 2 2233 3455666666666665 222 12222             334444555555552 2


Q ss_pred             chhh-hCCCCCCEEECCCCcCCCCC-CCcccCCCCCcEEEccCCCCC
Q 045233          194 PGEL-TELSRPDCLSLSANKLSGPV-PFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       194 p~~~-~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      ++.+ ..+++|+.|++++|+|.... -..++.+++|+.|++.+|+++
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            2222 34566666666666665321 133455666666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1.4e-10  Score=108.48  Aligned_cols=163  Identities=33%  Similarity=0.474  Sum_probs=119.5

Q ss_pred             ccccCCccccccCccccCCC-CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           70 WYDVDLNAQAQLSQLNFSCF-PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        70 ~l~~~~n~~~~l~~~~~~~l-~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                      .+++..+.+..++.. ...+ ++|+.|++  +.|.+.. +|..+..+++|+.|++++|+++ .+|......+.|+.|+++
T Consensus       120 ~L~l~~n~i~~i~~~-~~~~~~nL~~L~l--~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         120 SLDLDNNNITDIPPL-IGLLKSNLKELDL--SDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             EEecCCcccccCccc-cccchhhcccccc--cccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence            344445555555432 2233 27888888  6776653 4455777888888888888888 666665577888888888


Q ss_pred             cCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233          149 NNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP  218 (325)
Q Consensus       149 ~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  218 (325)
                      +|+++ .+|........|+++.+++|          .++++..+.+.+|++. ..+..++.++.++.|++++|.++.. +
T Consensus       195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~  271 (394)
T COG4886         195 GNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-S  271 (394)
T ss_pred             CCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-c
Confidence            88888 67766666666888888877          3456777778888877 4467788899999999999999954 3


Q ss_pred             CcccCCCCCcEEEccCCCCCchH
Q 045233          219 FSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       219 ~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                      . ++.+.+++.+++++|.++...
T Consensus       272 ~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         272 S-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             c-ccccCccCEEeccCccccccc
Confidence            3 889999999999999887543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=6e-11  Score=102.62  Aligned_cols=122  Identities=30%  Similarity=0.323  Sum_probs=102.2

Q ss_pred             CCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEE
Q 045233          114 ALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLD  183 (325)
Q Consensus       114 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~  183 (325)
                      ..+.|+++|||+|.++ .+.++..-.|.++.|++|+|.+. .+.. +..+++|+.||+++|          .+.+++.|.
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            3467899999999998 77888888899999999999998 4443 888999999999999          567889999


Q ss_pred             ccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCC-CCcccCCCCCcEEEccCCCCCch
Q 045233          184 ISNNKIEGSIPGELTELSRPDCLSLSANKLSGPV-PFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       184 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      |+.|.+...  +.++.+-+|..||+++|+|.... -..+++++-|+++.+.+|++.+.
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            999988732  34667788999999999998532 35689999999999999998765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.95  E-value=7.7e-11  Score=109.65  Aligned_cols=143  Identities=27%  Similarity=0.433  Sum_probs=117.3

Q ss_pred             ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233           70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN  149 (325)
Q Consensus        70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  149 (325)
                      .+.+..|.+..++. ++..+..|++|++  +.|+++ .+|..+..|+ |+.|-+++|+++ .+|+.++.++.|..||.+.
T Consensus       102 ~liLy~n~~r~ip~-~i~~L~~lt~l~l--s~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  102 SLILYHNCIRTIPE-AICNLEALTFLDL--SSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSK  175 (722)
T ss_pred             HHHHHhccceecch-hhhhhhHHHHhhh--ccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhh
Confidence            34455555555544 5778888999999  788776 4666777766 889999999998 8888899889999999999


Q ss_pred             CcCCCcCchhccCCCCCcEEEcCcCCCC---------CCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCc
Q 045233          150 NNLTGPIPSTLARLTNLKYLDLKVTSMK---------NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS  220 (325)
Q Consensus       150 N~l~~~~p~~~~~l~~L~~L~l~~n~l~---------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  220 (325)
                      |.+. .+|..++.+.+|+.|++..|++.         .|..||++.|+++ .+|-.|.+|+.|++|-|.+|+++. .|..
T Consensus       176 nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAq  252 (722)
T KOG0532|consen  176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQ  252 (722)
T ss_pred             hhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHH
Confidence            9998 88888999999999999888432         4788999999999 899999999999999999999984 3433


Q ss_pred             c
Q 045233          221 N  221 (325)
Q Consensus       221 ~  221 (325)
                      +
T Consensus       253 I  253 (722)
T KOG0532|consen  253 I  253 (722)
T ss_pred             H
Confidence            3

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=1.2e-09  Score=89.76  Aligned_cols=87  Identities=32%  Similarity=0.404  Sum_probs=25.9

Q ss_pred             hcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       136 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      +.+..++++|+|.+|+|+ .+. .++.            .+.+|+.|++++|.++. ++ .+..++.|+.|++++|.|+.
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~------------~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGA------------TLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             -----------------------S--T------------T-TT--EEE-TTS--S---T-T----TT--EEE--SS---S
T ss_pred             cccccccccccccccccc-ccc-chhh------------hhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc
Confidence            445567899999999998 332 2331            13445666777777773 33 46778999999999999995


Q ss_pred             CCCCcc-cCCCCCcEEEccCCCCCc
Q 045233          216 PVPFSN-KQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       216 ~~p~~~-~~l~~L~~L~l~~N~~~~  239 (325)
                       +...+ ..+++|+.|++++|++..
T Consensus        79 -i~~~l~~~lp~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   79 -ISEGLDKNLPNLQELYLSNNKISD  102 (175)
T ss_dssp             --CHHHHHH-TT--EEE-TTS---S
T ss_pred             -cccchHHhCCcCCEEECcCCcCCC
Confidence             44334 468999999999999865

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=1.6e-10  Score=100.08  Aligned_cols=123  Identities=31%  Similarity=0.369  Sum_probs=102.0

Q ss_pred             CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcE
Q 045233           89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKY  168 (325)
Q Consensus        89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  168 (325)
                      ...|+++|+  ++|.++ .+.++..-+|.++.|++|+|.+. .+.. +..+++|+.||||+|.++ .+..+-.++-+++.
T Consensus       283 Wq~LtelDL--S~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  283 WQELTELDL--SGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             Hhhhhhccc--cccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            456889999  888776 45667777899999999999998 4433 888999999999999999 66667778889999


Q ss_pred             EEcCcC---------CCCCCcEEEccCCcCCCC-CchhhhCCCCCCEEECCCCcCCCCC
Q 045233          169 LDLKVT---------SMKNLTWLDISNNKIEGS-IPGELTELSRPDCLSLSANKLSGPV  217 (325)
Q Consensus       169 L~l~~n---------~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~  217 (325)
                      |.++.|         .+-+|..||+++|+|... --..+++++.|+++.|.+|++.+..
T Consensus       357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            999999         455788999999998743 2246889999999999999998643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=1.4e-09  Score=73.55  Aligned_cols=58  Identities=48%  Similarity=0.684  Sum_probs=28.8

Q ss_pred             cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC
Q 045233          117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT  174 (325)
Q Consensus       117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n  174 (325)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            4455555555555333344555555555555555555444444555555544444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=2e-09  Score=72.73  Aligned_cols=60  Identities=33%  Similarity=0.433  Sum_probs=39.6

Q ss_pred             CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233          177 KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       177 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~  236 (325)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|+.|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            345666666666665555666666777777777777666556666777777777777665

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.79  E-value=4.1e-09  Score=98.62  Aligned_cols=148  Identities=38%  Similarity=0.471  Sum_probs=119.8

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCC-cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALS-KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT  164 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  164 (325)
                      ...++.++.|++  .+|.++. +|+....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......+
T Consensus       112 ~~~~~~l~~L~l--~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~  186 (394)
T COG4886         112 LLELTNLTSLDL--DNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS  186 (394)
T ss_pred             hhcccceeEEec--CCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhh
Confidence            444577889999  7777764 555566664 8999999999998 67677899999999999999999 7777666889


Q ss_pred             CCcEEEcCcCCC----------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccC
Q 045233          165 NLKYLDLKVTSM----------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSP  234 (325)
Q Consensus       165 ~L~~L~l~~n~l----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~  234 (325)
                      .|+.|++++|.+          ..|+++.+++|++. ..+..+..+..+..+.+.+|++. ..+..++.++.++.|++++
T Consensus       187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             hhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence            999999999832          23888999999755 56677888999999999999988 3467788899999999999


Q ss_pred             CCCCch
Q 045233          235 NKGLGS  240 (325)
Q Consensus       235 N~~~~~  240 (325)
                      |.+.-.
T Consensus       265 n~i~~i  270 (394)
T COG4886         265 NQISSI  270 (394)
T ss_pred             cccccc
Confidence            988654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=8.6e-10  Score=99.79  Aligned_cols=149  Identities=26%  Similarity=0.236  Sum_probs=67.0

Q ss_pred             CCCCCCCEEEeccccCcCCCCC--cccccCCCcCCEEecccCCCCCCCchh-hcCCcccceeecccCcCCCcC-chhccC
Q 045233           87 SCFPNLESLRIQAYYYGFTGSI--PSDISALSKLQLLDLSLNRLSGTIPSN-IGNLRNLVHLDLGNNNLTGPI-PSTLAR  162 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~-p~~~~~  162 (325)
                      ..|++++.|||  +.|=+....  -.....+++|+.|+++.|.+.-..... -..+++|+.|.|+.|.++... ......
T Consensus       143 k~~~~v~~LdL--S~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  143 KILPNVRDLDL--SRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhCCcceeecc--hhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            34556666666  555443321  122344556666666666554211111 123455555555555555221 112334


Q ss_pred             CCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCC-chhhhCCCCCCEEECCCCcCCCC-CCCc-----ccCC
Q 045233          163 LTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSI-PGELTELSRPDCLSLSANKLSGP-VPFS-----NKQL  224 (325)
Q Consensus       163 l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~-~p~~-----~~~l  224 (325)
                      +|+|+.|++..|           .++.|+.|||++|++-... -...+.++.|..|+++.+.++.. .|+.     ...+
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            455555555555           2234555555555544211 02334455555555555554431 1211     2334


Q ss_pred             CCCcEEEccCCCC
Q 045233          225 STMYIVRLSPNKG  237 (325)
Q Consensus       225 ~~L~~L~l~~N~~  237 (325)
                      ++|+.|++..|++
T Consensus       301 ~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  301 PKLEYLNISENNI  313 (505)
T ss_pred             ccceeeecccCcc
Confidence            4555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.8e-09  Score=97.76  Aligned_cols=152  Identities=22%  Similarity=0.202  Sum_probs=101.4

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCccc-ccCCCcCCEEecccCCCC-CCCchhhcCCcccceeecccCcCCCcCchhccCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSD-ISALSKLQLLDLSLNRLS-GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL  163 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~-l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  163 (325)
                      ...+|+|+.|++  +.|.+.-..... -..+++|+.|.++.|.++ ..+......+|+|+.|+|..|.....-......+
T Consensus       168 ~eqLp~Le~LNl--s~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~  245 (505)
T KOG3207|consen  168 AEQLPSLENLNL--SSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL  245 (505)
T ss_pred             HHhcccchhccc--ccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence            456888888888  777765332222 224678888888888887 2333445567888888888885332333345566


Q ss_pred             CCCcEEEcCcC------------CCCCCcEEEccCCcCCCC-Cchh-----hhCCCCCCEEECCCCcCCCCC-CCcccCC
Q 045233          164 TNLKYLDLKVT------------SMKNLTWLDISNNKIEGS-IPGE-----LTELSRPDCLSLSANKLSGPV-PFSNKQL  224 (325)
Q Consensus       164 ~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~~~~-p~~~~~l  224 (325)
                      ..|+.|+|++|            .++.|+.|+++.+++... .|+.     ...+++|++|++..|++.... -..+..+
T Consensus       246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l  325 (505)
T KOG3207|consen  246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL  325 (505)
T ss_pred             hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence            78888888887            467788888888887643 3333     345678888888888886421 1334556


Q ss_pred             CCCcEEEccCCCCCc
Q 045233          225 STMYIVRLSPNKGLG  239 (325)
Q Consensus       225 ~~L~~L~l~~N~~~~  239 (325)
                      ++|+.+.+..|++..
T Consensus       326 ~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  326 ENLKHLRITLNYLNK  340 (505)
T ss_pred             chhhhhhcccccccc
Confidence            677777777777654

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.67  E-value=2.5e-08  Score=91.90  Aligned_cols=45  Identities=31%  Similarity=0.347  Sum_probs=41.3

Q ss_pred             CCccccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          277 YDRSIVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       277 ~~~~~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..+.|+|.++.+||+||+  ++||+||||.||+|.+   ++|++||||.+
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l---~~~~~vAVK~~  107 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVL---SDGTVVAVKRL  107 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEE---CCCCEEEEEEe
Confidence            346799999999999998  8999999999999999   89999999964

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.67  E-value=8.9e-09  Score=90.90  Aligned_cols=163  Identities=17%  Similarity=0.190  Sum_probs=105.6

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCccc----ccCCCcCCEEecccCCCCCCCc-------------hhhcCCcccceeecc
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSD----ISALSKLQLLDLSLNRLSGTIP-------------SNIGNLRNLVHLDLG  148 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p-------------~~~~~l~~L~~L~Ls  148 (325)
                      +.+.++|++|+|  +.|.+...-++.    +.++..|++|.|.+|.+...-.             ...+.-+.|+.+...
T Consensus        88 L~~~~~L~~ldL--SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   88 LLGCPKLQKLDL--SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HhcCCceeEeec--cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            555667777777  666655433332    4556777777777777652111             112334567777777


Q ss_pred             cCcCCCc----CchhccCCCCCcEEEcCcC---------------CCCCCcEEEccCCcCCCC----CchhhhCCCCCCE
Q 045233          149 NNNLTGP----IPSTLARLTNLKYLDLKVT---------------SMKNLTWLDISNNKIEGS----IPGELTELSRPDC  205 (325)
Q Consensus       149 ~N~l~~~----~p~~~~~l~~L~~L~l~~n---------------~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~  205 (325)
                      +|++...    +...|...+.|+.+.+..|               .+++|+.|||.+|-++..    +...+..+++|+.
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            7777622    1234566677777777766               568888888888887743    3456677888888


Q ss_pred             EECCCCcCCCCCCCc-----ccCCCCCcEEEccCCCCCchHHHHHHHHHH
Q 045233          206 LSLSANKLSGPVPFS-----NKQLSTMYIVRLSPNKGLGSNFIIVLACLL  250 (325)
Q Consensus       206 L~L~~N~l~~~~p~~-----~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  250 (325)
                      |++++|.+...-...     -...++|+++.+.+|.++-....++..|+-
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~  295 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA  295 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence            888888887532211     134678899999999888776666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.64  E-value=5.1e-09  Score=92.41  Aligned_cols=174  Identities=18%  Similarity=0.227  Sum_probs=130.2

Q ss_pred             CCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCc-------------ccccCCCcCCEEecccCC
Q 045233           61 GSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP-------------SDISALSKLQLLDLSLNR  127 (325)
Q Consensus        61 ~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p-------------~~l~~l~~L~~L~Ls~n~  127 (325)
                      |+.+.+||+...+.-..+..+... +..+..|++|.|  ++|.+...-.             .-...-+.|+.+...+|+
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~l-l~s~~~L~eL~L--~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEEL-LSSCTDLEELYL--NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             CceeEeeccccccCccchHHHHHH-HHhccCHHHHhh--hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            466777777655555554444332 566899999999  8887653211             123445789999999999


Q ss_pred             CCC----CCchhhcCCcccceeecccCcCCCc----CchhccCCCCCcEEEcCcC---------------CCCCCcEEEc
Q 045233          128 LSG----TIPSNIGNLRNLVHLDLGNNNLTGP----IPSTLARLTNLKYLDLKVT---------------SMKNLTWLDI  184 (325)
Q Consensus       128 l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~n---------------~l~~L~~L~L  184 (325)
                      +..    .+...|...+.|+.+.+..|.|...    +-..+..+++|+.|||..|               .+++|+.|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            973    3445677889999999999998722    2356889999999999999               5678999999


Q ss_pred             cCCcCCCCCchhh-----hCCCCCCEEECCCCcCCCC----CCCcccCCCCCcEEEccCCCC
Q 045233          185 SNNKIEGSIPGEL-----TELSRPDCLSLSANKLSGP----VPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       185 s~n~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~  237 (325)
                      ++|.+.......+     ...+.|+.|.+.+|.++..    +.......+.|..|++++|.+
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            9999987655444     2478999999999999842    223345688999999999998

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=3.1e-08  Score=93.33  Aligned_cols=159  Identities=31%  Similarity=0.352  Sum_probs=84.1

Q ss_pred             ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233           70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN  149 (325)
Q Consensus        70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  149 (325)
                      .+++..|.+..+... +..+++|++|++  ++|.+....+  +..++.|+.|++++|.++. + ..+..+++|+.+++++
T Consensus        99 ~l~l~~n~i~~i~~~-l~~~~~L~~L~l--s~N~I~~i~~--l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   99 ALDLYDNKIEKIENL-LSSLVNLQVLDL--SFNKITKLEG--LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSY  171 (414)
T ss_pred             eeeccccchhhcccc-hhhhhcchheec--cccccccccc--hhhccchhhheeccCcchh-c-cCCccchhhhcccCCc
Confidence            344445554444321 455666666666  5666554422  4455556666666666652 2 2234456666666666


Q ss_pred             CcCCCcCchh-ccCCCCCcEEEcCcCC---------CCCCcEEEccCCcCCCCCchhhhCCC--CCCEEECCCCcCCCCC
Q 045233          150 NNLTGPIPST-LARLTNLKYLDLKVTS---------MKNLTWLDISNNKIEGSIPGELTELS--RPDCLSLSANKLSGPV  217 (325)
Q Consensus       150 N~l~~~~p~~-~~~l~~L~~L~l~~n~---------l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~  217 (325)
                      |+++..-+ . ...+.+++.+++..|.         +..+..+++..|.++..-+  +..+.  .|+.+++++|++. ..
T Consensus       172 n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~  247 (414)
T KOG0531|consen  172 NRIVDIEN-DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RS  247 (414)
T ss_pred             chhhhhhh-hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cc
Confidence            66663222 1 3555666666666651         1222333445555442211  11122  2677777777776 33


Q ss_pred             CCcccCCCCCcEEEccCCCCCc
Q 045233          218 PFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       218 p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      +..+..+..+..+++.+|.+..
T Consensus       248 ~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  248 PEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             cccccccccccccchhhccccc
Confidence            3455667777777777777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=7.6e-09  Score=99.11  Aligned_cols=121  Identities=29%  Similarity=0.333  Sum_probs=96.1

Q ss_pred             cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCC----------CCcEEEccC
Q 045233          117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMK----------NLTWLDISN  186 (325)
Q Consensus       117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~----------~L~~L~Ls~  186 (325)
                      .|...+.++|.+. .+..++.-++.|+.|+|++|+++. .. .+..+++|++||+++|.+.          .|..|.+++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence            4566778888887 677778888999999999999984 33 7889999999999999442          478888999


Q ss_pred             CcCCCCCchhhhCCCCCCEEECCCCcCCCCCC-CcccCCCCCcEEEccCCCCCchHH
Q 045233          187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVP-FSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       187 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      |.++..  ..+.++.+|+.||+++|-|.+... ..+..+..|+.|+|.||++.|...
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence            988733  256788999999999999886422 235677889999999999988644

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.31  E-value=2.8e-07  Score=93.60  Aligned_cols=147  Identities=26%  Similarity=0.342  Sum_probs=79.3

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      |..++.|++||+  ++|.-.+.+|..++.+-+|++|+++++.+. .+|..++++..|.+|++..+.-...+|.....+++
T Consensus       567 f~~m~~LrVLDL--s~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDL--SGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HhhCcceEEEEC--CCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence            555666666666  556555666666666666666666666666 66666666666666666666554444555555666


Q ss_pred             CcEEEcCcC-------------CCCCCcEEEccCCcCCCCCchhhhCCCCCC----EEECCCCcCCCCCCCcccCCCCCc
Q 045233          166 LKYLDLKVT-------------SMKNLTWLDISNNKIEGSIPGELTELSRPD----CLSLSANKLSGPVPFSNKQLSTMY  228 (325)
Q Consensus       166 L~~L~l~~n-------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~L~~N~l~~~~p~~~~~l~~L~  228 (325)
                      |++|.+-..             ++.+|+.+.......  .+-..+..++.|.    .+.+.++... ..+..+..+.+|+
T Consensus       644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~  720 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLE  720 (889)
T ss_pred             ccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcc
Confidence            666665332             222233222221111  0001112222221    2222222222 3345667888888


Q ss_pred             EEEccCCCCC
Q 045233          229 IVRLSPNKGL  238 (325)
Q Consensus       229 ~L~l~~N~~~  238 (325)
                      .|.+.+..+.
T Consensus       721 ~L~i~~~~~~  730 (889)
T KOG4658|consen  721 ELSILDCGIS  730 (889)
T ss_pred             eEEEEcCCCc
Confidence            8988887764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=2.2e-08  Score=86.81  Aligned_cols=164  Identities=19%  Similarity=0.142  Sum_probs=117.2

Q ss_pred             ccccccCCcccccc-CccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCC-CCchhhcCCcccce
Q 045233           68 LSWYDVDLNAQAQL-SQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSG-TIPSNIGNLRNLVH  144 (325)
Q Consensus        68 l~~l~~~~n~~~~l-~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~~L~~  144 (325)
                      ++++|++...++.- -...+..+.+|+.|.+  .++.+.+.+...+..-.+|+.|+++.+. ++. ...-.+.+++.|..
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSl--Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSL--EGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccc--cccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            44555555443311 0112677888999999  8888888888888888999999998875 331 22234678899999


Q ss_pred             eecccCcCCCcCch-hccC-CCCCcEEEcCcC--------------CCCCCcEEEccCCc-CCCCCchhhhCCCCCCEEE
Q 045233          145 LDLGNNNLTGPIPS-TLAR-LTNLKYLDLKVT--------------SMKNLTWLDISNNK-IEGSIPGELTELSRPDCLS  207 (325)
Q Consensus       145 L~Ls~N~l~~~~p~-~~~~-l~~L~~L~l~~n--------------~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~  207 (325)
                      |+|+.|.++...-. .+.+ -++|+.|+++++              .+++|.+|||++|. ++......|..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            99999988743322 2222 257888888876              68999999999875 5555566788899999999


Q ss_pred             CCCCcCCCCCCC---cccCCCCCcEEEccCC
Q 045233          208 LSANKLSGPVPF---SNKQLSTMYIVRLSPN  235 (325)
Q Consensus       208 L~~N~l~~~~p~---~~~~l~~L~~L~l~~N  235 (325)
                      ++.|..  .+|.   .+...+.|.+|++.+.
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            998863  3443   3678889999998775

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=1.4e-06  Score=54.41  Aligned_cols=37  Identities=41%  Similarity=0.670  Sum_probs=25.3

Q ss_pred             CcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC
Q 045233          116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT  153 (325)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  153 (325)
                      ++|++|++++|+++ .+|+.++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35777777777777 56666777777777777777776

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.18  E-value=1.6e-07  Score=88.51  Aligned_cols=99  Identities=37%  Similarity=0.426  Sum_probs=50.2

Q ss_pred             ccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEE
Q 045233          112 ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWL  182 (325)
Q Consensus       112 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L  182 (325)
                      +..+++|+.|++.+|.+. .+...+..+++|++|++++|.|+...  .+..++.|+.|++++|         .++.|+.+
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLL  167 (414)
T ss_pred             cccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhcc
Confidence            444555555555555555 22222444555555555555555221  1334444555555555         24455666


Q ss_pred             EccCCcCCCCCc-hhhhCCCCCCEEECCCCcCC
Q 045233          183 DISNNKIEGSIP-GELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       183 ~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~  214 (325)
                      ++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus       168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             cCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            666666663333 1 345555666666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=5.2e-08  Score=93.55  Aligned_cols=116  Identities=29%  Similarity=0.375  Sum_probs=85.1

Q ss_pred             CCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchh-ccCCCCCcEEE
Q 045233           92 LESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPST-LARLTNLKYLD  170 (325)
Q Consensus        92 L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~  170 (325)
                      |...+.  +.|.+. ....++.-++.|+.|||++|+++.. . .+..+++|++|||++|.+. .+|.- ...+ +|+.|.
T Consensus       166 L~~a~f--syN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  166 LATASF--SYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             Hhhhhc--chhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence            444455  556554 3445666778889999999998843 2 6888899999999999998 66642 2233 488999


Q ss_pred             cCcC---------CCCCCcEEEccCCcCCCC-CchhhhCCCCCCEEECCCCcCC
Q 045233          171 LKVT---------SMKNLTWLDISNNKIEGS-IPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       171 l~~n---------~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      +++|         ++.+|+.||+++|-+.+. .-..+..+..|+.|+|.+|++.
T Consensus       239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9988         677888999999987753 2234566778889999999886

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=1.9e-07  Score=72.20  Aligned_cols=57  Identities=28%  Similarity=0.448  Sum_probs=29.5

Q ss_pred             cCCCcCCEEecccCCCCCCCchhhc-CCcccceeecccCcCCCcCchhccCCCCCcEEEc
Q 045233          113 SALSKLQLLDLSLNRLSGTIPSNIG-NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL  171 (325)
Q Consensus       113 ~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  171 (325)
                      .....|+..+|++|.+. .+|+.|. ..+.++.|+|++|.++ .+|..+..++.|+.|++
T Consensus        50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            33444555566666665 3444433 2335566666666665 55555555555444433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.05  E-value=3.4e-06  Score=85.77  Aligned_cols=117  Identities=31%  Similarity=0.430  Sum_probs=86.9

Q ss_pred             CCCCCEEEeccccCc--CCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233           89 FPNLESLRIQAYYYG--FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL  166 (325)
Q Consensus        89 l~~L~~L~l~~~~n~--~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  166 (325)
                      .++|+.|-+  ..|.  +....++.|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..+. .+|..+.++..|
T Consensus       544 ~~~L~tLll--~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  544 NPKLRTLLL--QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCccceEEE--eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            457888888  6665  44444555888999999999998776799999999999999999999999 899999999999


Q ss_pred             cEEEcCcC-----------CCCCCcEEEccCCc--CCCCCchhhhCCCCCCEEEC
Q 045233          167 KYLDLKVT-----------SMKNLTWLDISNNK--IEGSIPGELTELSRPDCLSL  208 (325)
Q Consensus       167 ~~L~l~~n-----------~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L  208 (325)
                      .+|++..+           .+++|++|.+..-.  .+...-..+..+.+|+.+..
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99988765           26677777765543  22223334445555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=5.8e-06  Score=72.04  Aligned_cols=149  Identities=21%  Similarity=0.188  Sum_probs=73.8

Q ss_pred             CCCCCEEEeccccCcCCCC--CcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcC-chhccCCCC
Q 045233           89 FPNLESLRIQAYYYGFTGS--IPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPI-PSTLARLTN  165 (325)
Q Consensus        89 l~~L~~L~l~~~~n~~~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~  165 (325)
                      .+.++.+|+  ..|.++..  +...+.++|.|+.|+++.|++...+...-....+|+.|-|.+..+...- ...+..+|.
T Consensus        70 ~~~v~elDL--~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDL--TGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhhc--ccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            445555555  55555432  2233445566666666666555322211123445555555555544222 123334445


Q ss_pred             CcEEEcCcC----------------------------------------CCCCCcEEEccCCcCCCCC-chhhhCCCCCC
Q 045233          166 LKYLDLKVT----------------------------------------SMKNLTWLDISNNKIEGSI-PGELTELSRPD  204 (325)
Q Consensus       166 L~~L~l~~n----------------------------------------~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~  204 (325)
                      ++.|+++.|                                        .++++..+.+..|.+...- -..+..++.+.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            555544444                                        2355555555555544221 12233455555


Q ss_pred             EEECCCCcCCCCC-CCcccCCCCCcEEEccCCCCCc
Q 045233          205 CLSLSANKLSGPV-PFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       205 ~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      .|+|+.|+|.... -+.+..++.|..|.++.|++..
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            6666666665421 2345666667777777776653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=1.2e-05  Score=50.10  Aligned_cols=36  Identities=47%  Similarity=0.676  Sum_probs=20.5

Q ss_pred             CCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233          178 NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       178 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666666 34445666666666666666665

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=9.5e-07  Score=68.41  Aligned_cols=84  Identities=24%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +.....|+..++  ++|.+....+......+.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+
T Consensus        49 l~~~~el~~i~l--s~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~  124 (177)
T KOG4579|consen   49 LSKGYELTKISL--SDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK  124 (177)
T ss_pred             HhCCceEEEEec--ccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence            445566777888  888877544444455678899999999998 78888999999999999999998 67777776666


Q ss_pred             CcEEEcCc
Q 045233          166 LKYLDLKV  173 (325)
Q Consensus       166 L~~L~l~~  173 (325)
                      +-.|+...
T Consensus       125 l~~Lds~~  132 (177)
T KOG4579|consen  125 LDMLDSPE  132 (177)
T ss_pred             HHHhcCCC
Confidence            55554433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=2e-05  Score=65.09  Aligned_cols=106  Identities=25%  Similarity=0.285  Sum_probs=70.7

Q ss_pred             CcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCch
Q 045233          116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG  195 (325)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~  195 (325)
                      .+...+||++|.+. .+ +.|..++.|.+|.|++|+|+...|.--.-+++|+.|.+.+|++..|..|            +
T Consensus        42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl------------~  107 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL------------D  107 (233)
T ss_pred             cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc------------c
Confidence            34567888888876 22 3467778888888888888855554333344555555555444333222            2


Q ss_pred             hhhCCCCCCEEECCCCcCCCC---CCCcccCCCCCcEEEccCC
Q 045233          196 ELTELSRPDCLSLSANKLSGP---VPFSNKQLSTMYIVRLSPN  235 (325)
Q Consensus       196 ~~~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~l~~N  235 (325)
                      .+..++.|++|.+-+|+.+..   --..+..+++|+.||+..=
T Consensus       108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            456788999999999998753   2345788999999998753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=1.9e-06  Score=75.10  Aligned_cols=123  Identities=24%  Similarity=0.240  Sum_probs=79.0

Q ss_pred             cCCEEecccCCCC-CCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-------------CCCCCcEE
Q 045233          117 KLQLLDLSLNRLS-GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-------------SMKNLTWL  182 (325)
Q Consensus       117 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-------------~l~~L~~L  182 (325)
                      .|++||||+..++ ..+...+..+.+|+.|.|.++++...+...+.+-.+|+.|+++.+             +++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5788888888776 234445667788888888888888777777888888888888766             56778888


Q ss_pred             EccCCcCCCCCchh-hhC-CCCCCEEECCCCc--CC-CCCCCcccCCCCCcEEEccCCCCCc
Q 045233          183 DISNNKIEGSIPGE-LTE-LSRPDCLSLSANK--LS-GPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       183 ~Ls~n~l~~~~p~~-~~~-l~~L~~L~L~~N~--l~-~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      +++.+.++...... +.+ -++|+.|++++..  +. ..+..-...+++|..||+++|....
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            88887765432211 111 2356666666543  11 1112223556777777777765543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.59  E-value=3.8e-05  Score=76.34  Aligned_cols=122  Identities=25%  Similarity=0.309  Sum_probs=69.2

Q ss_pred             CCCCEEEeccccCcCC-CCCcccc-cCCCcCCEEecccCCCC-CCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233           90 PNLESLRIQAYYYGFT-GSIPSDI-SALSKLQLLDLSLNRLS-GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL  166 (325)
Q Consensus        90 ~~L~~L~l~~~~n~~~-~~~p~~l-~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  166 (325)
                      .+|+.|++  ++.... ..=|..+ ..+|.|+.|.+++-.+. ..+.....++|+|..||+|+.+++..  ..++.+++|
T Consensus       122 ~nL~~LdI--~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDI--SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCc--cccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            45677777  443221 1111222 23677777777776664 23334455677777778877777732  456677777


Q ss_pred             cEEEcCcC------------CCCCCcEEEccCCcCCCCC--c----hhhhCCCCCCEEECCCCcCCC
Q 045233          167 KYLDLKVT------------SMKNLTWLDISNNKIEGSI--P----GELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       167 ~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~--p----~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      +.|.+.+=            ++++|+.||+|........  .    +.-..+|.|+.||.+++.+++
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            77665432            5666777777665543221  1    112346677777777666553

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.57  E-value=7.2e-05  Score=46.36  Aligned_cols=35  Identities=34%  Similarity=0.621  Sum_probs=21.7

Q ss_pred             HHHHHHHHcCC-------CCCCCCCCCCCCCCCccceeeEeC
Q 045233           24 QLETKALLDTG-------WWNSSFWMANYSSDHCKWIGITCN   58 (325)
Q Consensus        24 ~~~~~~ll~~~-------~~~~~~W~~~~~~~~C~w~gv~c~   58 (325)
                      ++|+++|++++       ...+.+|......++|+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            57888888732       345788953223799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=0.00016  Score=59.84  Aligned_cols=79  Identities=25%  Similarity=0.310  Sum_probs=47.3

Q ss_pred             CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCc--hhccCCCCCcE
Q 045233           91 NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIP--STLARLTNLKY  168 (325)
Q Consensus        91 ~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~  168 (325)
                      ....+|+  ..|.+...  +.|..++.|.+|.+.+|+|+..-|.--..+++|..|.|.+|.|. .+.  +.+..+++|++
T Consensus        43 ~~d~iDL--tdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   43 QFDAIDL--TDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccceecc--cccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence            4456666  55555432  34566777888888888887555544445577888888888777 221  12444555555


Q ss_pred             EEcCcC
Q 045233          169 LDLKVT  174 (325)
Q Consensus       169 L~l~~n  174 (325)
                      |.+-+|
T Consensus       118 Ltll~N  123 (233)
T KOG1644|consen  118 LTLLGN  123 (233)
T ss_pred             eeecCC
Confidence            544444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.51  E-value=0.0001  Score=63.75  Aligned_cols=127  Identities=23%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             ccCCCcCCEEecccCCCCCCCchhh----cCCcccceeecccCcCCCc----Cchh---------ccCCCCCcEEEcCcC
Q 045233          112 ISALSKLQLLDLSLNRLSGTIPSNI----GNLRNLVHLDLGNNNLTGP----IPST---------LARLTNLKYLDLKVT  174 (325)
Q Consensus       112 l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~Ls~N~l~~~----~p~~---------~~~l~~L~~L~l~~n  174 (325)
                      +-++++|+..+||.|.+....|+.+    ...+.|++|.+++|.+.-.    +..+         ...-|.|+......|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            3445666666666666554444332    3345566666666655411    1101         112345555555555


Q ss_pred             CC---------------CCCcEEEccCCcCCCCCc-----hhhhCCCCCCEEECCCCcCCCC----CCCcccCCCCCcEE
Q 045233          175 SM---------------KNLTWLDISNNKIEGSIP-----GELTELSRPDCLSLSANKLSGP----VPFSNKQLSTMYIV  230 (325)
Q Consensus       175 ~l---------------~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L  230 (325)
                      ++               ..|+.+.+..|.|....-     ..+..+.+|+.||+.+|-++..    +...++.++.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            21               245555566665542110     1123345566666666665532    22234445555666


Q ss_pred             EccCCCCC
Q 045233          231 RLSPNKGL  238 (325)
Q Consensus       231 ~l~~N~~~  238 (325)
                      .+.++-++
T Consensus       248 ~lnDClls  255 (388)
T COG5238         248 RLNDCLLS  255 (388)
T ss_pred             cccchhhc
Confidence            66555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.47  E-value=7.6e-05  Score=74.26  Aligned_cols=117  Identities=26%  Similarity=0.338  Sum_probs=85.7

Q ss_pred             CCCCCCCEEEeccccCcCCC-CCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCC-cCchhccCCC
Q 045233           87 SCFPNLESLRIQAYYYGFTG-SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG-PIPSTLARLT  164 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~  164 (325)
                      ..||.|+.|.+  .+-.+.. ..-....++++|..||+|+.+++..  ..++.+++|+.|.+.+=.+.. ..-..+.+++
T Consensus       145 ~~LPsL~sL~i--~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~  220 (699)
T KOG3665|consen  145 TMLPSLRSLVI--SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK  220 (699)
T ss_pred             hhCcccceEEe--cCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence            35899999999  6655432 2233456789999999999999843  668899999999988876662 1123577899


Q ss_pred             CCcEEEcCcC-----------------CCCCCcEEEccCCcCCCCCchhh-hCCCCCCEEE
Q 045233          165 NLKYLDLKVT-----------------SMKNLTWLDISNNKIEGSIPGEL-TELSRPDCLS  207 (325)
Q Consensus       165 ~L~~L~l~~n-----------------~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~  207 (325)
                      +|+.||+|..                 .+|+|+.||.|++.+.+..-+.+ ...++|+.+.
T Consensus       221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            9999999865                 68999999999998876544333 2344454443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.43  E-value=0.00013  Score=62.98  Aligned_cols=152  Identities=13%  Similarity=0.109  Sum_probs=108.4

Q ss_pred             CCCCCCEEEeccccCcCCCCC----cccccCCCcCCEEecccCCCC---CCCc-------hhhcCCcccceeecccCcCC
Q 045233           88 CFPNLESLRIQAYYYGFTGSI----PSDISALSKLQLLDLSLNRLS---GTIP-------SNIGNLRNLVHLDLGNNNLT  153 (325)
Q Consensus        88 ~l~~L~~L~l~~~~n~~~~~~----p~~l~~l~~L~~L~Ls~n~l~---~~~p-------~~~~~l~~L~~L~Ls~N~l~  153 (325)
                      .+..+..+++  ++|.+...-    ...+.+-.+|+..+++.-...   ..++       +.+-.||+|+..+||.|-+.
T Consensus        28 ~~d~~~evdL--SGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          28 MMDELVEVDL--SGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             hhcceeEEec--cCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3677788888  888776543    333455677777777754332   1223       34557899999999999998


Q ss_pred             CcCch----hccCCCCCcEEEcCcC------------------------CCCCCcEEEccCCcCCCCCch----hhhCCC
Q 045233          154 GPIPS----TLARLTNLKYLDLKVT------------------------SMKNLTWLDISNNKIEGSIPG----ELTELS  201 (325)
Q Consensus       154 ~~~p~----~~~~l~~L~~L~l~~n------------------------~l~~L~~L~Ls~n~l~~~~p~----~~~~l~  201 (325)
                      ...|+    .+++-+.|.+|.+++|                        .-|.|+......|++......    .+..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            77665    4667789999999999                        336899999999998743221    233446


Q ss_pred             CCCEEECCCCcCCCC-----CCCcccCCCCCcEEEccCCCCCchH
Q 045233          202 RPDCLSLSANKLSGP-----VPFSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       202 ~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                      .|+.+.+..|.|...     +-..+..+.+|++|++.+|.++--.
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g  230 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG  230 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh
Confidence            899999999988722     1123456789999999999987543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.37  E-value=0.00071  Score=62.72  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=44.3

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC-cCCCcCchh
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN-NLTGPIPST  159 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~  159 (325)
                      +..+++++.|++  ++|.+. .+|. +  .++|++|.++++.--..+|..+.  ++|++|++++| .+. .+|+.
T Consensus        48 ~~~~~~l~~L~I--s~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s  113 (426)
T PRK15386         48 IEEARASGRLYI--KDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPES  113 (426)
T ss_pred             HHHhcCCCEEEe--CCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccc
Confidence            444688999999  777655 3452 2  24699999988544346676553  58999999988 554 56644

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.35  E-value=0.00081  Score=52.13  Aligned_cols=126  Identities=17%  Similarity=0.205  Sum_probs=57.9

Q ss_pred             cCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhc
Q 045233           81 LSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTL  160 (325)
Q Consensus        81 l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  160 (325)
                      ++...|.++++|+.+.+  . +.+...-...|..+++|+.+.+..+ +...-...|.++++|+.+.+.+ .+.......|
T Consensus         3 i~~~~F~~~~~l~~i~~--~-~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITF--P-NTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             E-TTTTTT-TT--EEEE--T-ST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             ECHHHHhCCCCCCEEEE--C-CCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence            45556788888888888  4 2455444556777878888888775 5544455677777788888865 4442334456


Q ss_pred             cCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCC
Q 045233          161 ARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTM  227 (325)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  227 (325)
                      ..+++|+.+++             ..+ +.......|.+. .++.+.+.. .++......|.++++|
T Consensus        78 ~~~~~l~~i~~-------------~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   78 SNCTNLKNIDI-------------PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TT-TTECEEEE-------------TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccccc-------------Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            65666655544             332 332333445555 677777664 3333444555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=3.5e-05  Score=67.34  Aligned_cols=126  Identities=22%  Similarity=0.252  Sum_probs=85.2

Q ss_pred             CCCcCCEEecccCCCCC--CCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCC
Q 045233          114 ALSKLQLLDLSLNRLSG--TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNL  179 (325)
Q Consensus       114 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L  179 (325)
                      ..+.++.+||.+|.++.  .+...+.++|.|++|+|+.|.+...+...-..+.+|+.|-|.+.            .+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            46889999999999983  45556789999999999999998443322245678999988776            56778


Q ss_pred             cEEEccCCcCCCC---------Cchh--------------------hhCCCCCCEEECCCCcCCCCC-CCcccCCCCCcE
Q 045233          180 TWLDISNNKIEGS---------IPGE--------------------LTELSRPDCLSLSANKLSGPV-PFSNKQLSTMYI  229 (325)
Q Consensus       180 ~~L~Ls~n~l~~~---------~p~~--------------------~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~  229 (325)
                      ++|+++.|.+.-.         +...                    -..++++..+.+..|++...- ......++.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            8888888843211         0000                    012456666666677665432 234455667777


Q ss_pred             EEccCCCCCc
Q 045233          230 VRLSPNKGLG  239 (325)
Q Consensus       230 L~l~~N~~~~  239 (325)
                      |+++.|++-.
T Consensus       229 LnL~~~~ids  238 (418)
T KOG2982|consen  229 LNLGANNIDS  238 (418)
T ss_pred             hhhccccccc
Confidence            8888887643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=0.00015  Score=62.18  Aligned_cols=61  Identities=34%  Similarity=0.459  Sum_probs=37.1

Q ss_pred             CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC--CCCCCCchhhcCCcccceeecccCcCC
Q 045233           89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN--RLSGTIPSNIGNLRNLVHLDLGNNNLT  153 (325)
Q Consensus        89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~  153 (325)
                      +..|+.|++  .+..++..  ..+..+++|++|.++.|  .+.+.++.....+++|++|++++|++.
T Consensus        42 ~~~le~ls~--~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSV--INVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhh--hccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            334444444  33333322  23456677888888888  555555555556688888888888876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=0.00022  Score=61.18  Aligned_cols=109  Identities=23%  Similarity=0.263  Sum_probs=65.2

Q ss_pred             CcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC--cCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEcc
Q 045233          108 IPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN--NLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDIS  185 (325)
Q Consensus       108 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls  185 (325)
                      +......+..|+.|.+.+..++..  ..+..+++|++|.++.|  ++++.++.....+++|++|+++.            
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~------------  100 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG------------  100 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC------------
Confidence            444455567777888887777622  23567889999999999  66655555445556666555554            


Q ss_pred             CCcCCC--CCchhhhCCCCCCEEECCCCcCCCCC---CCcccCCCCCcEEEc
Q 045233          186 NNKIEG--SIPGELTELSRPDCLSLSANKLSGPV---PFSNKQLSTMYIVRL  232 (325)
Q Consensus       186 ~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~l  232 (325)
                       |++..  .+ ..+..+.+|..|++.+|..+..-   -..|.-+++|.+++-
T Consensus       101 -Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  101 -NKIKDLSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             -Ccccccccc-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence             44441  11 13455666777777777665421   122444566666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.10  E-value=0.0013  Score=61.10  Aligned_cols=120  Identities=16%  Similarity=0.234  Sum_probs=73.9

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC-CCCCCCchhhcCCcccceeec
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN-RLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      ..|+++.+.+..++..    -++|+.|.+  .++.-...+|..+.  ++|++|++++| .+. .+|+      +|+.|++
T Consensus        55 ~~L~Is~c~L~sLP~L----P~sLtsL~L--snc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L  119 (426)
T PRK15386         55 GRLYIKDCDIESLPVL----PNELTEITI--ENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEI  119 (426)
T ss_pred             CEEEeCCCCCcccCCC----CCCCcEEEc--cCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEe
Confidence            3444555555555521    246999999  65544456665553  68999999998 554 5554      4777778


Q ss_pred             ccCcCC--CcCchhccCCCCCcEEEcCcC----------CC-CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCc
Q 045233          148 GNNNLT--GPIPSTLARLTNLKYLDLKVT----------SM-KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANK  212 (325)
Q Consensus       148 s~N~l~--~~~p~~~~~l~~L~~L~l~~n----------~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~  212 (325)
                      +.+...  +.+|+      +|+.|.+..+          .+ ++|++|++++|... ..|+.+.  .+|+.|+++.|.
T Consensus       120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            776653  24444      3445554321          12 47888999888765 3443333  478888887763

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.99  E-value=0.0022  Score=49.64  Aligned_cols=108  Identities=12%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             ccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcC
Q 045233          110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKI  189 (325)
Q Consensus       110 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l  189 (325)
                      ..|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......|.++++|+.+.+             .+ .+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~-------------~~-~~   69 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF-------------PN-NL   69 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE-------------TS-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc-------------cc-cc
Confidence            4577788899998875 566455566888888999998875 66344456776666666544             33 33


Q ss_pred             CCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCC
Q 045233          190 EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN  235 (325)
Q Consensus       190 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N  235 (325)
                      .......|..+++++.+++..+ ++......+... +++.+.+..+
T Consensus        70 ~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~  113 (129)
T PF13306_consen   70 KSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN  113 (129)
T ss_dssp             -EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred             cccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC
Confidence            3234456777899999999776 554445667776 8888887653

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=96.89  E-value=0.00086  Score=62.16  Aligned_cols=27  Identities=15%  Similarity=0.146  Sum_probs=24.6

Q ss_pred             cceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..+||+|+||.||||.|    +++.||||.|
T Consensus       215 ~eli~~Grfg~V~KaqL----~~~~VAVKif  241 (534)
T KOG3653|consen  215 LELIGRGRFGCVWKAQL----DNRLVAVKIF  241 (534)
T ss_pred             HHHhhcCccceeehhhc----cCceeEEEec
Confidence            37899999999999999    4799999987

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.20  E-value=0.0018  Score=33.66  Aligned_cols=18  Identities=61%  Similarity=0.837  Sum_probs=8.0

Q ss_pred             cceeecccCcCCCcCchhc
Q 045233          142 LVHLDLGNNNLTGPIPSTL  160 (325)
Q Consensus       142 L~~L~Ls~N~l~~~~p~~~  160 (325)
                      |++|||++|+++ .+|+.|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.00035  Score=60.63  Aligned_cols=61  Identities=26%  Similarity=0.333  Sum_probs=26.1

Q ss_pred             CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCc--hhhcCCcccceeecccCcCCC
Q 045233           89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP--SNIGNLRNLVHLDLGNNNLTG  154 (325)
Q Consensus        89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~  154 (325)
                      ++.|++|.|  +-|.++..-|  +..+++|++|+|..|.|.. +.  ..+.++++|+.|.|..|.-.|
T Consensus        40 Mp~lEVLsL--SvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   40 MPLLEVLSL--SVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             cccceeEEe--eccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCccc
Confidence            444455544  4444443322  3444444444554444441 11  123344444444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.00041  Score=60.26  Aligned_cols=77  Identities=26%  Similarity=0.368  Sum_probs=46.4

Q ss_pred             CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCch--hccCCCCC
Q 045233           89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS--TLARLTNL  166 (325)
Q Consensus        89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L  166 (325)
                      +.+.+.|+.  -++.+.+.  .....++.|+.|.||-|.++..-|  +..+++|++|+|..|.|. .+.+  .+.++++|
T Consensus        18 l~~vkKLNc--wg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNC--WGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcc--cCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence            445556666  56655542  224567778888888888874333  667788888888888777 3322  33444444


Q ss_pred             cEEEcC
Q 045233          167 KYLDLK  172 (325)
Q Consensus       167 ~~L~l~  172 (325)
                      +.|-|.
T Consensus        91 r~LWL~   96 (388)
T KOG2123|consen   91 RTLWLD   96 (388)
T ss_pred             hhHhhc
Confidence            444333

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.80  E-value=0.0035  Score=32.57  Aligned_cols=21  Identities=52%  Similarity=0.762  Sum_probs=15.2

Q ss_pred             cCCEEecccCCCCCCCchhhcC
Q 045233          117 KLQLLDLSLNRLSGTIPSNIGN  138 (325)
Q Consensus       117 ~L~~L~Ls~n~l~~~~p~~~~~  138 (325)
                      +|++||+++|+++ .+|+.|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4678888888887 67766654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=95.51  E-value=0.012  Score=56.76  Aligned_cols=35  Identities=6%  Similarity=-0.006  Sum_probs=27.4

Q ss_pred             hcCCc--ceeecCCCcEEEEEeee--------------cCCCCcEEEEEEe
Q 045233          290 TEGFD--YLIQFPKFESFALSFLF--------------RSSTGTFLIIIFY  324 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~--------------~~~~~~~vav~~~  324 (325)
                      +++|+  ++||+||||.||+|.+.              ...+++.||||-.
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l  194 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRV  194 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEe
Confidence            66776  89999999999999752              1246688999963

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.41  E-value=0.031  Score=51.82  Aligned_cols=26  Identities=12%  Similarity=0.105  Sum_probs=24.3

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+||+|-||.|++|.+    .|+-||||+|
T Consensus       217 e~IGkGRyGEVwrG~w----rGe~VAVKiF  242 (513)
T KOG2052|consen  217 EIIGKGRFGEVWRGRW----RGEDVAVKIF  242 (513)
T ss_pred             EEecCccccceeeccc----cCCceEEEEe
Confidence            6789999999999999    5999999987

>PTZ00284 protein kinase; Provisional

Probab=95.21  E-value=0.014  Score=55.96  Aligned_cols=38  Identities=13%  Similarity=0.140  Sum_probs=30.5

Q ss_pred             HHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          285 DLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       285 ~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++...+++|.  ..||+|+||.||++...  .+++.||||++
T Consensus       123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~--~~~~~vAvK~i  162 (467)
T PTZ00284        123 DIDVSTQRFKILSLLGEGTFGKVVEAWDR--KRKEYCAVKIV  162 (467)
T ss_pred             ccccCCCcEEEEEEEEeccCEEEEEEEEc--CCCeEEEEEEE
Confidence            3334556665  78999999999999985  67899999975

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=95.06  E-value=0.012  Score=58.15  Aligned_cols=46  Identities=20%  Similarity=0.109  Sum_probs=38.8

Q ss_pred             CccccHHHHHHHhcCCc-----------ceeecCCCcEEEEEeee-cCCCCcEEEEEE
Q 045233          278 DRSIVYEDLIEATEGFD-----------YLIQFPKFESFALSFLF-RSSTGTFLIIIF  323 (325)
Q Consensus       278 ~~~~~~~~l~~~t~nf~-----------~~ig~g~~g~vy~g~l~-~~~~~~~vav~~  323 (325)
                      -+++||+|--.|...|.           .+||.|.||.||+|.|. ++.....||||-
T Consensus       607 iDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKT  664 (996)
T KOG0196|consen  607 IDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKT  664 (996)
T ss_pred             cCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEee
Confidence            46789999888877774           88999999999999997 567778999984

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=94.99  E-value=0.026  Score=55.47  Aligned_cols=34  Identities=9%  Similarity=-0.039  Sum_probs=28.4

Q ss_pred             HhcCCc--ceeecCCCcEEEEEeeecCCC----CcEEEEEEe
Q 045233          289 ATEGFD--YLIQFPKFESFALSFLFRSST----GTFLIIIFY  324 (325)
Q Consensus       289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~----~~~vav~~~  324 (325)
                      .+++|.  ..||+|+||.||+|+..  .+    +..||||..
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~--~~~~~~~~~vAvK~~  169 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLV--NKQSKKEGKYVLKKA  169 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEc--CCccccCcEEEEEEe
Confidence            456675  88999999999999995  55    799999963

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=94.80  E-value=0.022  Score=54.68  Aligned_cols=25  Identities=12%  Similarity=-0.002  Sum_probs=22.1

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|.||+||+|.+.    | .||||+|
T Consensus       398 ~rIGsGsFGtV~Rg~wh----G-dVAVK~L  422 (678)
T KOG0193|consen  398 ERIGSGSFGTVYRGRWH----G-DVAVKLL  422 (678)
T ss_pred             ceeccccccceeecccc----c-ceEEEEE
Confidence            68999999999999994    3 5899987

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.46  E-value=0.0014  Score=55.62  Aligned_cols=91  Identities=21%  Similarity=0.286  Sum_probs=58.9

Q ss_pred             cccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCch
Q 045233           79 AQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS  158 (325)
Q Consensus        79 ~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  158 (325)
                      ..++.-.+..+...+.||+  +.|++.. +...++-++.|..||++.|++. ..|..++....+..+++..|..+ ..|.
T Consensus        31 s~~~v~ei~~~kr~tvld~--~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~  105 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDL--SSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK  105 (326)
T ss_pred             cccchhhhhccceeeeehh--hhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence            3444444566677777777  5665432 2334556667777777777776 67777777777777777777776 6677


Q ss_pred             hccCCCCCcEEEcCcC
Q 045233          159 TLARLTNLKYLDLKVT  174 (325)
Q Consensus       159 ~~~~l~~L~~L~l~~n  174 (325)
                      ++...++++++++..|
T Consensus       106 s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKT  121 (326)
T ss_pred             cccccCCcchhhhccC
Confidence            7777666666655444

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=93.95  E-value=0.053  Score=50.10  Aligned_cols=26  Identities=12%  Similarity=0.043  Sum_probs=23.0

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcE-EEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTF-LIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~-vav~~~  324 (325)
                      ..||.|+||.||+|+.    .|+. ||||.|
T Consensus        47 ~~iG~G~~g~V~~~~~----~g~~~vavK~~   73 (362)
T KOG0192|consen   47 EVLGSGSFGTVYKGKW----RGTDVVAVKII   73 (362)
T ss_pred             hhcccCCceeEEEEEe----CCceeEEEEEe
Confidence            3499999999999999    4777 999987

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=93.94  E-value=0.055  Score=51.25  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=29.4

Q ss_pred             HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..++|+  ..||+||||.||.++-.  .+|.+.|+|+.
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk--~Tg~iyAmK~L  174 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKK--DTGEIYAMKIL  174 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEc--cCCcEEeeecc
Confidence            356676  78999999999999997  89999999963

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.90  E-value=0.029  Score=27.10  Aligned_cols=10  Identities=60%  Similarity=0.757  Sum_probs=3.1

Q ss_pred             cceeecccCc
Q 045233          142 LVHLDLGNNN  151 (325)
Q Consensus       142 L~~L~Ls~N~  151 (325)
                      |+.|+|++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>smart00090 RIO RIO-like kinase

Probab=93.87  E-value=0.068  Score=46.39  Aligned_cols=27  Identities=15%  Similarity=0.023  Sum_probs=24.7

Q ss_pred             ceeecCCCcEEEEEe--eecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSF--LFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~--l~~~~~~~~vav~~~  324 (325)
                      ..||.|+||.||+|+  .   .+|+.||||.+
T Consensus        34 ~~Lg~G~~g~Vy~a~~~~---~~g~~vaiK~~   62 (237)
T smart00090       34 GCISTGKEANVYHALDFD---GSGKERAVKIY   62 (237)
T ss_pred             CeeccCcceeEEEEEecC---CCCcEEEEEEE
Confidence            589999999999998  5   78999999986

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=93.87  E-value=0.048  Score=52.75  Aligned_cols=28  Identities=7%  Similarity=-0.061  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++..  .+|+.||||.+
T Consensus        38 ~~LG~G~fG~Vy~a~~~--~~g~~vAvK~i   65 (496)
T PTZ00283         38 RVLGSGATGTVLCAKRV--SDGEPFAVKVV   65 (496)
T ss_pred             EEEecCCCEEEEEEEEc--CCCCEEEEEEE
Confidence            78999999999999875  78999999975

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=93.75  E-value=0.061  Score=49.92  Aligned_cols=40  Identities=20%  Similarity=0.165  Sum_probs=31.8

Q ss_pred             HHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          283 YEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       283 ~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      +.++....++|.  ..||+|+||.||++.-.  .+++.||+|++
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~--~~~~~~aiK~i   76 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK--STRKVYAMKLL   76 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEEC--CCCcEEEEEEE
Confidence            334444556665  78999999999999986  78899999985

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=93.61  E-value=0.036  Score=49.69  Aligned_cols=27  Identities=7%  Similarity=-0.141  Sum_probs=25.0

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      +.|++|+||.||+|+=.  .+++.||.|-
T Consensus        82 nrI~EGtyGiVYRakdk--~t~eIVALKr  108 (419)
T KOG0663|consen   82 NRIEEGTYGVVYRAKDK--KTDEIVALKR  108 (419)
T ss_pred             hhcccCcceeEEEeccC--CcceeEEeee
Confidence            78999999999999997  8999999984

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=93.58  E-value=0.065  Score=49.69  Aligned_cols=33  Identities=18%  Similarity=0.174  Sum_probs=27.5

Q ss_pred             hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .++|.  ..||+|+||.||+++..  .+++.||+|++
T Consensus        42 ~~~y~~~~~lG~G~fg~Vy~~~~~--~~~~~~aiK~~   76 (370)
T cd05621          42 AEDYDVVKVIGRGAFGEVQLVRHK--SSQKVYAMKLL   76 (370)
T ss_pred             HHHCeEEEEEEecCCeEEEEEEEC--CCCCEEEEEEE
Confidence            34444  78999999999999985  77899999975

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=93.57  E-value=0.076  Score=48.76  Aligned_cols=28  Identities=11%  Similarity=-0.100  Sum_probs=25.3

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++..  .+|+.||||++
T Consensus        80 ~~lg~G~~g~V~~~~~~--~~~~~vaiK~~  107 (353)
T PLN00034         80 NRIGSGAGGTVYKVIHR--PTGRLYALKVI  107 (353)
T ss_pred             hhccCCCCeEEEEEEEC--CCCCEEEEEEE
Confidence            57999999999999985  78999999986

>PTZ00036 glycogen synthase kinase; Provisional

Probab=93.52  E-value=0.081  Score=50.34  Aligned_cols=28  Identities=14%  Similarity=0.005  Sum_probs=25.1

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+..  .+|+.||||.+
T Consensus        72 ~~LG~G~fg~Vy~~~~~--~~~~~vAiK~i   99 (440)
T PTZ00036         72 NIIGNGSFGVVYEAICI--DTSEKVAIKKV   99 (440)
T ss_pred             EEEEeCCCEEEEEEEEC--CCCCEEEEEEE
Confidence            78999999999999985  67899999965

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=93.22  E-value=0.057  Score=50.04  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=27.7

Q ss_pred             hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .++|.  ..||+|+||.||+++-.  .+|+.||||.+
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~--~~~~~~aiK~~   76 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHK--SSKQVYAMKLL   76 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEEC--CCCCEEEEEEE
Confidence            34454  78999999999999986  78999999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=93.02  E-value=0.079  Score=50.37  Aligned_cols=28  Identities=11%  Similarity=-0.032  Sum_probs=26.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..+|+|-||+||-|+--  .+|+.||||++
T Consensus       570 evLGSGQFG~VYgg~hR--ktGrdVAvKvI  597 (888)
T KOG4236|consen  570 EVLGSGQFGTVYGGKHR--KTGRDVAVKVI  597 (888)
T ss_pred             hhccCCcceeeecceec--ccCceeeeeee
Confidence            88999999999999997  89999999986

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.02  E-value=0.0018  Score=61.85  Aligned_cols=153  Identities=22%  Similarity=0.232  Sum_probs=95.0

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCc----ccccCC-CcCCEEecccCCCCC----CCchhhcCCcccceeecccCcCCC--
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIP----SDISAL-SKLQLLDLSLNRLSG----TIPSNIGNLRNLVHLDLGNNNLTG--  154 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p----~~l~~l-~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~--  154 (325)
                      +...++|+.|++  +.|.+.+.--    ..+... ..|++|++..|.++.    .+...+.....++.++++.|.+..  
T Consensus       111 l~t~~~L~~L~l--~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g  188 (478)
T KOG4308|consen  111 LKTLPTLGQLDL--SGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG  188 (478)
T ss_pred             hcccccHhHhhc--ccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence            556777888888  7777663211    112222 456677777777763    445556667778888888887741  


Q ss_pred             --cCchhcc----CCCCCcEEEcCcCCC---------------CC-CcEEEccCCcCCCC----CchhhhCC-CCCCEEE
Q 045233          155 --PIPSTLA----RLTNLKYLDLKVTSM---------------KN-LTWLDISNNKIEGS----IPGELTEL-SRPDCLS  207 (325)
Q Consensus       155 --~~p~~~~----~l~~L~~L~l~~n~l---------------~~-L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~  207 (325)
                        .++..+.    ...++++|.+++|.+               +. +..+++..|.+.+.    ....+..+ ..++.++
T Consensus       189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~  268 (478)
T KOG4308|consen  189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD  268 (478)
T ss_pred             hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence              1222333    466777787777622               23 55578888877643    22334445 5678888


Q ss_pred             CCCCcCCCC----CCCcccCCCCCcEEEccCCCCCch
Q 045233          208 LSANKLSGP----VPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       208 L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      ++.|.|+..    ....+..++.++.+.++.|++...
T Consensus       269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            888888753    233445566778888888877654

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=92.83  E-value=0.085  Score=49.75  Aligned_cols=39  Identities=15%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             ecCCccccHHHHHHHhcCCcceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          275 WNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       275 ~~~~~~~~~~~l~~~t~nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      |...+...|+.|.        .||+|+||.||+++=.  .+|..||+|=
T Consensus       111 w~~r~~~~feki~--------kIGeGTyg~VYkAr~~--~tgkivALKK  149 (560)
T KOG0600|consen  111 WGPRRADSFEKIE--------KIGEGTYGQVYKARDL--ETGKIVALKK  149 (560)
T ss_pred             ccccchHHHHHHH--------HhcCcchhheeEeeec--ccCcEEEEEE
Confidence            3333345566654        7999999999999986  9999999984

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=92.66  E-value=0.13  Score=48.91  Aligned_cols=27  Identities=7%  Similarity=0.007  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||.|++|.||+|++   .+|+.||||+.
T Consensus       123 ~plasaSigQVh~A~l---~~G~~VaVKv~  149 (437)
T TIGR01982       123 KPLAAASIAQVHRARL---VDGKEVAVKVL  149 (437)
T ss_pred             cceeeeehhheEEEEe---cCCCEEEEEee
Confidence            6799999999999999   89999999985

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=92.19  E-value=0.14  Score=47.51  Aligned_cols=30  Identities=7%  Similarity=0.090  Sum_probs=24.4

Q ss_pred             ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~  324 (325)
                      ..||+||||.||+++..   ...++..||||.+
T Consensus        41 ~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l   73 (375)
T cd05104          41 KTLGAGAFGKVVEATAYGLFKSDAAMTVAVKML   73 (375)
T ss_pred             heecCCccceEEEEEEeccccCccceeEEEEec
Confidence            79999999999999753   2356779999975

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.19  E-value=0.0058  Score=51.93  Aligned_cols=99  Identities=22%  Similarity=0.290  Sum_probs=72.2

Q ss_pred             hcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       136 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      +......+.||++.|++. .+-..|..+             +.+..|+++.|++. ..|..++....+..+++..|+.+ 
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~-------------t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-  101 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSIL-------------TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-  101 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHH-------------HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-
Confidence            444556666777776665 222233322             34566788888888 78889999999999999999888 


Q ss_pred             CCCCcccCCCCCcEEEccCCCCCchHHHHHHHHHH
Q 045233          216 PVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACLL  250 (325)
Q Consensus       216 ~~p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  250 (325)
                      ..|.+++..+.++.+++.+|++.-...-++..|.+
T Consensus       102 ~~p~s~~k~~~~k~~e~k~~~~~~~~~~~v~~c~~  136 (326)
T KOG0473|consen  102 QQPKSQKKEPHPKKNEQKKTEFFRKLFGFVWSCVF  136 (326)
T ss_pred             hCCccccccCCcchhhhccCcchHHHHhHhhhhhh
Confidence            67889999999999999999987655555555543

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=91.77  E-value=0.054  Score=41.59  Aligned_cols=30  Identities=13%  Similarity=0.155  Sum_probs=26.6

Q ss_pred             cCCc-ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          291 EGFD-YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       291 ~nf~-~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      +.|+ ..|+.|+.|.||+|+|   .+|+.||||+
T Consensus        12 ~~fd~~PlasASiaQVh~a~l---~~g~~VaVKV   42 (119)
T PF03109_consen   12 DEFDPEPLASASIAQVHRARL---KDGEEVAVKV   42 (119)
T ss_pred             HHCCcchhhheehhhheeeee---cccchhhhhh
Confidence            4455 7899999999999999   8899999997

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=91.53  E-value=0.19  Score=47.22  Aligned_cols=30  Identities=7%  Similarity=0.021  Sum_probs=23.4

Q ss_pred             ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~  324 (325)
                      .+||+|+||.||+|+...   ...+..||||.+
T Consensus        43 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l   75 (400)
T cd05105          43 RILGSGAFGKVVEGTAYGLSRSQPVMKVAVKML   75 (400)
T ss_pred             heecCCCCceEEEEEEcccCCCCCceEEEEEec
Confidence            789999999999998631   233457999975

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=90.94  E-value=0.18  Score=46.73  Aligned_cols=30  Identities=7%  Similarity=0.027  Sum_probs=23.5

Q ss_pred             ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++..   ...++..||||.+
T Consensus        44 ~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~   76 (374)
T cd05106          44 KTLGAGAFGKVVEATAFGLGKEDNVLRVAVKML   76 (374)
T ss_pred             heecCCCcccEEEEEEecCCcccccceeEEEec
Confidence            78999999999998853   1245568999975

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=90.73  E-value=0.21  Score=50.16  Aligned_cols=32  Identities=9%  Similarity=0.008  Sum_probs=24.9

Q ss_pred             CcceeecCCCcEEEEEeeecCC--CCcEEEEEEe
Q 045233          293 FDYLIQFPKFESFALSFLFRSS--TGTFLIIIFY  324 (325)
Q Consensus       293 f~~~ig~g~~g~vy~g~l~~~~--~~~~vav~~~  324 (325)
                      -+.+||+|+||.||+|.+.|.+  -...||||++
T Consensus       700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl  733 (1177)
T KOG1025|consen  700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVL  733 (1177)
T ss_pred             hhceeccccceeEEeeeEecCCceecceeEEEEe
Confidence            3589999999999999998431  2267888875

>PHA03209 serine/threonine kinase US3; Provisional

Probab=90.67  E-value=0.32  Score=44.76  Aligned_cols=32  Identities=3%  Similarity=-0.062  Sum_probs=26.7

Q ss_pred             hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      ..+|.  ..||+|+||.||+++..  .+++.||+|.
T Consensus        65 ~~~y~~~~~lg~G~~g~Vy~~~~~--~~~~~valK~   98 (357)
T PHA03209         65 SLGYTVIKTLTPGSEGRVFVATKP--GQPDPVVLKI   98 (357)
T ss_pred             hcCcEEEEEecCCCCeEEEEEEEC--CCCceEEEEe
Confidence            34555  78999999999999985  6788999996

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=90.58  E-value=0.32  Score=44.45  Aligned_cols=29  Identities=10%  Similarity=-0.033  Sum_probs=23.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++.. ..++..||||.+
T Consensus        36 ~~ig~G~~g~Vy~a~~~-~~~~~~vavK~~   64 (340)
T PTZ00426         36 RTLGTGSFGRVILATYK-NEDFPPVAIKRF   64 (340)
T ss_pred             EEEeecCCeEEEEEEEE-CCCCeEEEEEEE
Confidence            78999999999999863 133478999976

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.51  E-value=0.0034  Score=60.00  Aligned_cols=124  Identities=28%  Similarity=0.307  Sum_probs=88.2

Q ss_pred             CCCCEEEeccccCcCCCC----CcccccCCCcCCEEecccCCCC----CCCchhhc----CCcccceeecccCcCCCcC-
Q 045233           90 PNLESLRIQAYYYGFTGS----IPSDISALSKLQLLDLSLNRLS----GTIPSNIG----NLRNLVHLDLGNNNLTGPI-  156 (325)
Q Consensus        90 ~~L~~L~l~~~~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~----~l~~L~~L~Ls~N~l~~~~-  156 (325)
                      ..+++|++  ..|.++..    +...+.....++.++++.|.+.    -.++..+.    ...++++|.+++|.++... 
T Consensus       144 ~~l~~L~l--~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c  221 (478)
T KOG4308|consen  144 CLLQTLEL--VSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSC  221 (478)
T ss_pred             HHHHHHHh--hcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHH
Confidence            55677887  66766643    4455667888999999999884    12333344    4778999999999988321 


Q ss_pred             ---chhccCCCC-CcEEEcCcC---------------CC-CCCcEEEccCCcCCCCC----chhhhCCCCCCEEECCCCc
Q 045233          157 ---PSTLARLTN-LKYLDLKVT---------------SM-KNLTWLDISNNKIEGSI----PGELTELSRPDCLSLSANK  212 (325)
Q Consensus       157 ---p~~~~~l~~-L~~L~l~~n---------------~l-~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~  212 (325)
                         ...+...++ +..|++..|               .+ ..++.++++.|.++...    +..+...+.++.+.+++|.
T Consensus       222 ~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  222 ALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             HHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence               123444555 677888888               22 46789999999998654    3455667789999999999


Q ss_pred             CCC
Q 045233          213 LSG  215 (325)
Q Consensus       213 l~~  215 (325)
                      +..
T Consensus       302 l~~  304 (478)
T KOG4308|consen  302 LTD  304 (478)
T ss_pred             ccc
Confidence            885

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.15  E-value=0.22  Score=26.66  Aligned_cols=13  Identities=62%  Similarity=0.848  Sum_probs=5.7

Q ss_pred             ccceeecccCcCC
Q 045233          141 NLVHLDLGNNNLT  153 (325)
Q Consensus       141 ~L~~L~Ls~N~l~  153 (325)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.15  E-value=0.22  Score=26.66  Aligned_cols=13  Identities=62%  Similarity=0.848  Sum_probs=5.7

Q ss_pred             ccceeecccCcCC
Q 045233          141 NLVHLDLGNNNLT  153 (325)
Q Consensus       141 ~L~~L~Ls~N~l~  153 (325)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.97  E-value=0.11  Score=49.45  Aligned_cols=100  Identities=27%  Similarity=0.158  Sum_probs=58.8

Q ss_pred             CCCCCCEEEeccccCcCCCC--CcccccCCCcCCEEecccC-CCCCCC----chhhcCCcccceeecccCc-CCCcCchh
Q 045233           88 CFPNLESLRIQAYYYGFTGS--IPSDISALSKLQLLDLSLN-RLSGTI----PSNIGNLRNLVHLDLGNNN-LTGPIPST  159 (325)
Q Consensus        88 ~l~~L~~L~l~~~~n~~~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~----p~~~~~l~~L~~L~Ls~N~-l~~~~p~~  159 (325)
                      .++.|+.|.+  ..+.-...  +-.....++.|+.|+++++ ......    ......+++|+.|+++++. ++...-..
T Consensus       186 ~~~~L~~l~l--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  186 SCPLLKRLSL--SGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             hCchhhHhhh--cccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            3677777777  44432222  2344556788888888763 211111    1233456778888888877 55333333


Q ss_pred             cc-CCCCCcEEEcCcC-------------CCCCCcEEEccCCcC
Q 045233          160 LA-RLTNLKYLDLKVT-------------SMKNLTWLDISNNKI  189 (325)
Q Consensus       160 ~~-~l~~L~~L~l~~n-------------~l~~L~~L~Ls~n~l  189 (325)
                      +. .+++|+.|.+..+             .++.|++|+++++..
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            33 2677888776554             456788888877654

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.67  E-value=0.38  Score=47.08  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=28.4

Q ss_pred             hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      .++|.  .++|+|.||+|+.+.+.  ++++.-|||+
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k--~~~e~yAIK~  400 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELK--GTNEYYAIKV  400 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEc--CCCcEEEEEE
Confidence            45565  78999999999999998  8999999997

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=89.63  E-value=0.34  Score=46.19  Aligned_cols=28  Identities=11%  Similarity=-0.085  Sum_probs=21.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCC---cEEEEEE
Q 045233          295 YLIQFPKFESFALSFLFRSSTG---TFLIIIF  323 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~---~~vav~~  323 (325)
                      ..+|+|.||.||+|+|.. .++   ..||||.
T Consensus       163 kkLGeGaFGeV~~G~l~~-~~~~~~~~VAvK~  193 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKL-KNGFKVVPVAVKT  193 (474)
T ss_pred             ceeecccccEEEEEEEEe-cCCceeeeeEEEe
Confidence            699999999999999962 212   2289984

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.55  E-value=0.35  Score=25.88  Aligned_cols=14  Identities=50%  Similarity=0.679  Sum_probs=7.9

Q ss_pred             CCCcEEEccCCcCC
Q 045233          177 KNLTWLDISNNKIE  190 (325)
Q Consensus       177 ~~L~~L~Ls~n~l~  190 (325)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555566666555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.55  E-value=0.35  Score=25.88  Aligned_cols=14  Identities=50%  Similarity=0.679  Sum_probs=7.9

Q ss_pred             CCCcEEEccCCcCC
Q 045233          177 KNLTWLDISNNKIE  190 (325)
Q Consensus       177 ~~L~~L~Ls~n~l~  190 (325)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555566666555

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=89.30  E-value=0.34  Score=50.02  Aligned_cols=26  Identities=15%  Similarity=0.119  Sum_probs=24.3

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      ..||+||||+||+|+=   .+|..||+|+
T Consensus       704 ~e~G~g~y~~vy~a~~---~~~~~~alK~  729 (974)
T KOG1166|consen  704 KEIGEGSYGSVYVATH---SNGKLVALKV  729 (974)
T ss_pred             eeeccccceEEEEeec---CCCcEEEEEe
Confidence            7789999999999999   7899999996

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=89.17  E-value=0.42  Score=46.36  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=25.7

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+||+|.||.|.++.=.  .+++.||||+.
T Consensus       192 e~LGkGtFGQVvk~~d~--~T~e~VAIKIi  219 (586)
T KOG0667|consen  192 EVLGKGSFGQVVKAYDH--KTGEIVAIKII  219 (586)
T ss_pred             EEecccccceeEEEEec--CCCcEEEEEee
Confidence            68999999999999986  88999999985

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=89.07  E-value=0.49  Score=46.08  Aligned_cols=29  Identities=14%  Similarity=0.237  Sum_probs=25.7

Q ss_pred             Cc-ceeecCCCcEEEEEeeecCCC-CcEEEEEEe
Q 045233          293 FD-YLIQFPKFESFALSFLFRSST-GTFLIIIFY  324 (325)
Q Consensus       293 f~-~~ig~g~~g~vy~g~l~~~~~-~~~vav~~~  324 (325)
                      |+ ..||+|++|.||++++   .+ |+.||||+.
T Consensus       122 fd~~PlasaSiaQVh~A~l---~~~G~~VAVKV~  152 (537)
T PRK04750        122 FDIKPLASASIAQVHFARL---KDNGREVVVKVL  152 (537)
T ss_pred             cChhhhcCCCccEEEEEEE---CCCCCEEEEEEe
Confidence            55 6799999999999999   66 999999984

>PHA03212 serine/threonine kinase US3; Provisional

Probab=88.51  E-value=0.52  Score=44.10  Aligned_cols=27  Identities=7%  Similarity=-0.283  Sum_probs=24.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      ..||+|+||.||++.-.  .+++.||||.
T Consensus        98 ~~lg~G~~g~V~~~~d~--~~~~~vaiK~  124 (391)
T PHA03212         98 ETFTPGAEGFAFACIDN--KTCEHVVIKA  124 (391)
T ss_pred             EEEcCCCCeEEEEEEEC--CCCCEEEEec
Confidence            78999999999999885  7899999985

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=88.36  E-value=0.48  Score=44.54  Aligned_cols=30  Identities=7%  Similarity=-0.037  Sum_probs=23.9

Q ss_pred             ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++...   ...+..||||.+
T Consensus        43 ~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l   75 (401)
T cd05107          43 RTLGSGAFGRVVEATAHGLSHSQSTMKVAVKML   75 (401)
T ss_pred             hhccCCCceeEEEEEEcCCCCCCCceEEEEEec
Confidence            689999999999999741   134578999975

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.95  E-value=0.38  Score=46.60  Aligned_cols=27  Identities=11%  Similarity=-0.019  Sum_probs=24.1

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      .-||-|+||.||.+.=.  .+.++||||-
T Consensus        32 rEIGHGSFGAVYfArd~--~n~evVAIKK   58 (948)
T KOG0577|consen   32 REIGHGSFGAVYFARDV--RNSEVVAIKK   58 (948)
T ss_pred             HHhcCCccceeEEeecc--Cccceeeeee
Confidence            35899999999999987  8999999983

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=86.93  E-value=0.28  Score=51.11  Aligned_cols=36  Identities=17%  Similarity=-0.031  Sum_probs=29.2

Q ss_pred             HHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          287 IEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       287 ~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+.-++|.  .++|+||||.||+.+=.  =||+.-|||=+
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNK--lDGr~YAIKKI  512 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNK--LDGREYAIKKI  512 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeec--ccchhhhhhhc
Confidence            45666776  78999999999998765  68999999843

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.87  E-value=0.14  Score=42.67  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=17.0

Q ss_pred             CCEEecccCCCCCCCchhhcCCcccceeecccCc
Q 045233          118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN  151 (325)
Q Consensus       118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  151 (325)
                      ++.+|.++..|..+--+.+.+++.++.|.+.++.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            4555555555554433444445555555444443

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=86.83  E-value=0.58  Score=41.79  Aligned_cols=30  Identities=7%  Similarity=0.036  Sum_probs=23.9

Q ss_pred             ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~  324 (325)
                      +.||+|+||.||+++..   ...++..||||.+
T Consensus        41 ~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~   73 (302)
T cd05055          41 KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKML   73 (302)
T ss_pred             ceeeccCCeeEEEEEEecCCCCCceeEEEEEec
Confidence            78999999999999853   1245678999975

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>PHA03211 serine/threonine kinase US3; Provisional

Probab=86.24  E-value=0.78  Score=44.00  Aligned_cols=27  Identities=4%  Similarity=-0.293  Sum_probs=24.3

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      ..||+|+||.||++...  .+++.||||.
T Consensus       175 ~~Lg~G~~G~Vy~a~~~--~~~~~vavK~  201 (461)
T PHA03211        175 RALTPGSEGCVFESSHP--DYPQRVVVKA  201 (461)
T ss_pred             EEEccCCCeEEEEEEEC--CCCCEEEEec
Confidence            78999999999999986  6789999995

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.77  E-value=0.15  Score=26.76  Aligned_cols=12  Identities=58%  Similarity=0.753  Sum_probs=4.0

Q ss_pred             CcEEEccCCcCC
Q 045233          179 LTWLDISNNKIE  190 (325)
Q Consensus       179 L~~L~Ls~n~l~  190 (325)
                      |++|++++|+++
T Consensus         4 L~~L~l~~n~i~   15 (24)
T PF13516_consen    4 LETLDLSNNQIT   15 (24)
T ss_dssp             -SEEE-TSSBEH
T ss_pred             CCEEEccCCcCC
Confidence            333444444433

...

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=84.65  E-value=0.79  Score=47.59  Aligned_cols=30  Identities=7%  Similarity=-0.068  Sum_probs=23.0

Q ss_pred             CcceeecCCCcEEEEEeeecCCCC----cEEEEEE
Q 045233          293 FDYLIQFPKFESFALSFLFRSSTG----TFLIIIF  323 (325)
Q Consensus       293 f~~~ig~g~~g~vy~g~l~~~~~~----~~vav~~  323 (325)
                      +...||+|.||.||.|++. ..+|    ..||||-
T Consensus       696 l~~~lG~G~FG~VY~g~~~-~~~~~~~~~~vaiK~  729 (1025)
T KOG1095|consen  696 LLRVLGKGAFGEVYEGTYS-DVPGSVSPIQVAVKS  729 (1025)
T ss_pred             eeeeeccccccceEEEEEe-cCCCCccceEEEEEe
Confidence            4488999999999999994 3333    4588874

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=84.55  E-value=1  Score=42.03  Aligned_cols=28  Identities=18%  Similarity=-0.039  Sum_probs=25.8

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..+|+|.||.||+++-.  .+|+.+|+|++
T Consensus        41 ~~lG~G~Fg~v~~~~~~--~tg~~~A~K~i   68 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREK--STGKEVACKVI   68 (382)
T ss_pred             hhhCCCCceEEEEEEec--CCCceeEEEEe
Confidence            78999999999999996  67999999986

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=84.07  E-value=0.81  Score=41.34  Aligned_cols=27  Identities=19%  Similarity=0.044  Sum_probs=24.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      ..||.|.||..+.|+=-  -+++.|||||
T Consensus        34 kKIGeGsFG~lf~G~Nl--~nne~VAIKf   60 (449)
T KOG1165|consen   34 KKIGEGSFGVLFLGKNL--YNNEPVAIKF   60 (449)
T ss_pred             cccccCcceeeeccccc--ccCceEEEEe
Confidence            68999999999999843  7899999998

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=83.54  E-value=0.14  Score=45.38  Aligned_cols=27  Identities=15%  Similarity=0.014  Sum_probs=24.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIF  323 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~  323 (325)
                      ..+|+|.||+||++.-.  +.|++||||-
T Consensus        39 ~KLGEGSYGSV~KAIH~--EsG~v~AIK~   65 (502)
T KOG0574|consen   39 GKLGEGSYGSVHKAIHR--ESGHVLAIKK   65 (502)
T ss_pred             HHhcCCcchHHHHHHHh--ccCcEEEEEe
Confidence            47999999999999987  8999999983

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.35  E-value=0.23  Score=49.56  Aligned_cols=30  Identities=7%  Similarity=0.010  Sum_probs=25.8

Q ss_pred             cceeecCCCcEEEEEeee---cCCCCcEEEEEE
Q 045233          294 DYLIQFPKFESFALSFLF---RSSTGTFLIIIF  323 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~---~~~~~~~vav~~  323 (325)
                      .+-||+|.||+||+|...   +..+.+.||||.
T Consensus       491 ~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~  523 (774)
T KOG1026|consen  491 KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKA  523 (774)
T ss_pred             hhhhcCchhhhhhhhhccCCCCCccceehhHhh
Confidence            367999999999999997   457789999985

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.53  E-value=0.76  Score=24.81  Aligned_cols=17  Identities=41%  Similarity=0.741  Sum_probs=9.7

Q ss_pred             ccceeecccCcCCCcCch
Q 045233          141 NLVHLDLGNNNLTGPIPS  158 (325)
Q Consensus       141 ~L~~L~Ls~N~l~~~~p~  158 (325)
                      +|++|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4556666666665 4443

>PHA03207 serine/threonine kinase US3; Provisional

Probab=81.47  E-value=1.7  Score=40.53  Aligned_cols=30  Identities=3%  Similarity=-0.184  Sum_probs=24.0

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||.|+||.||++......++..||||..
T Consensus        98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~  127 (392)
T PHA03207         98 SSLTPGSEGEVFVCTKHGDEQRKKVIVKAV  127 (392)
T ss_pred             EeecCCCCeEEEEEEEcCCccceeEEEEec
Confidence            679999999999998643345688999864

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=81.24  E-value=1.7  Score=40.37  Aligned_cols=28  Identities=18%  Similarity=0.138  Sum_probs=25.7

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..+|+|+||.|-++.=.  .+|+.||||.+
T Consensus       178 ~~LGsGafg~Vkla~e~--~tgk~vAiKIi  205 (475)
T KOG0615|consen  178 KTLGSGAFGLVKLAYEK--KTGKQVAIKII  205 (475)
T ss_pred             eeecCCceeEEEEEEEc--ccCcEEEeeee
Confidence            67899999999999987  89999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-08
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-07
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-07

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 130 GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKI 189
           G IP  IG++  L  L+LG+N+++G IP              +V  ++ L  LD+S+NK+
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPD-------------EVGDLRGLNILDLSSNKL 689
Query: 190 EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238
           +G IP  ++ L+    + LS N LSGP+P    Q  T    +   N GL
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGL 737

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 130 GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKI 189
           G IP  IG++  L  L+LG+N+++G IP              +V  ++ L  LD+S+NK+
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPD-------------EVGDLRGLNILDLSSNKL 692
Query: 190 EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238
           +G IP  ++ L+    + LS N LSGP+P    Q  T    +   N GL
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGL 740

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 132 IPSNIGNLRNLVHLDLGN-NNLTGPIPSTLARLTNLKYLDLKVTS-----------MKNL 179
           IPS++ NL  L  L +G  NNL GPIP  +A+LT L YL +  T+           +K L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 180 TWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS----NKQLSTMYIVR 231
             LD S N + G++P  ++ L     ++   N++SG +P S    +K  ++M I R
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  152 bits (386), Expect = 5e-44
 Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 20/211 (9%)

Query: 41  WMANYSSDHCKWIGITCNSAG---SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRI 97
           W+      +  W+G+ C++      +  L+LS   ++L     +   + +  P L  L I
Sbjct: 27  WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS--GLNLPKPYPIP-SSLANLPYLNFLYI 83

Query: 98  QAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIP 157
                   G IP  I+ L++L  L ++   +SG IP  +  ++ LV LD   N L+G +P
Sbjct: 84  -GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

Query: 158 STLARLTNLKYLDL-----------KVTSMKNL-TWLDISNNKIEGSIPGELTELSRPDC 205
            +++ L NL  +                S   L T + IS N++ G IP     L+    
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201

Query: 206 LSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
           + LS N L G              + L+ N 
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  131 bits (332), Expect = 4e-36
 Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 13/149 (8%)

Query: 104 FTGSIPSDISALSKL-QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR 162
            +G+IP    + SKL   + +S NRL+G IP    NL NL  +DL  N L G        
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS 219

Query: 163 LTNLKYLDL----------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANK 212
             N + + L          KV   KNL  LD+ NN+I G++P  LT+L     L++S N 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 213 LSGPVPFSNKQLSTMYIVRLSPNKGLGSN 241
           L G +P     L    +   + NK L  +
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANNKCLCGS 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (348), Expect = 2e-36
 Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 82  SQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRN 141
             L  +    L+ L +     GFTG IP  +S  S+L  L LS N LSGTIPS++G+L  
Sbjct: 386 PNLCQNPKNTLQELYL--QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443

Query: 142 LVHLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKNLTWLDISNNKIE 190
           L  L L  N L G IP  L  +  L+ L L            +++  NL W+ +SNN++ 
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 191 GSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
           G IP  +  L     L LS N  SG +P       ++  + L+ N 
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  134 bits (339), Expect = 3e-35
 Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 48/233 (20%)

Query: 44  NYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQ--------AQLSQLN---------- 85
           + + + C + G+TC     +  ++LS     LN            L+ L           
Sbjct: 34  SSNKNPCTFDGVTCRD-DKVTSIDLS--SKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 90

Query: 86  -----FSCFPNLESLRIQAYYYGFTGSIPSD--ISALSKLQLLDLSLNRLSGTIP-SNIG 137
                F C  +L SL +       +G + +   + + S L+ L++S N L      S   
Sbjct: 91  GSVSGFKCSASLTSLDL--SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148

Query: 138 NLRNLVHLDLGNNNLTGPIPSTLAR---LTNLKYLDLK---------VTSMKNLTWLDIS 185
            L +L  LDL  N+++G              LK+L +          V+   NL +LD+S
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208

Query: 186 NNKIEGSIP--GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
           +N     IP  G+ + L     L +S NKLSG    +    + + ++ +S N+
Sbjct: 209 SNNFSTGIPFLGDCSALQH---LDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  127 bits (322), Expect = 7e-33
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 13/190 (6%)

Query: 61  GSI-IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQ 119
           G+I   +      +  N  A    +        +          F G     ++ LS   
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 120 LLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-------- 171
             +++     G       N  +++ LD+  N L+G IP  +  +  L  L+L        
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671

Query: 172 ---KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMY 228
              +V  ++ L  LD+S+NK++G IP  ++ L+    + LS N LSGP+P    Q  T  
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFP 730

Query: 229 IVRLSPNKGL 238
             +   N GL
Sbjct: 731 PAKFLNNPGL 740

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (318), Expect = 2e-32
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 18/164 (10%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHL 145
            S   NLE L +      F+  IP  +   S LQ LD+S N+LSG     I     L  L
Sbjct: 196 VSRCVNLEFLDV--SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 146 DLGNNNLTGPIPSTLARLTNLKYLDLK------------VTSMKNLTWLDISNNKIEGSI 193
           ++ +N   GPIP     L +L+YL L               +   LT LD+S N   G++
Sbjct: 253 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 194 PGELTELSRPDCLSLSANKLSGPVPFSN-KQLSTMYIVRLSPNK 236
           P      S  + L+LS+N  SG +P     ++  + ++ LS N+
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (304), Expect = 1e-30
 Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 87  SCFPNLESLRIQAYYYGFTGSIPSDISA-LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHL 145
               +L+ L +      FTG IP  +S     L  LDLS N   G +P   G+   L  L
Sbjct: 266 LPLKSLQYLSL--AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 146 DLGNNNLTGPIP-STLARLTNLKYLDLKVTSM------------KNLTWLDISNNKIEGS 192
            L +NN +G +P  TL ++  LK LDL                  +L  LD+S+N   G 
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 193 IPGELTELSRP--DCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
           I   L +  +     L L  N  +G +P +    S +  + LS N 
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (282), Expect = 1e-27
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 9/142 (6%)

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163
            TG IP  I  L  L +L LS N  SG IP+ +G+ R+L+ LDL  N   G IP+ + + 
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 164 TNL---------KYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           +           +Y+ +K   MK       +  + +G    +L  LS  +  ++++    
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 215 GPVPFSNKQLSTMYIVRLSPNK 236
           G    +     +M  + +S N 
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNM 643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (255), Expect = 3e-24
 Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 15/170 (8%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
           +L+Q+      N+  L +   +        ++ +  S+L  LD+  N +S   P     L
Sbjct: 15  KLTQVPDDLPTNITVLNLT--HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL 72

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISNNK 188
             L  L+L +N L+     T A  TNL  L L                KNL  LD+S+N 
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 189 IEGSIPGELTELSRPDCLSLSANKLSG--PVPFSNKQLSTMYIVRLSPNK 236
           +  +  G   +L     L LS NK+             S++  + LS N+
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 35/180 (19%), Positives = 58/180 (32%), Gaps = 19/180 (10%)

Query: 80  QLSQLNFSCFPNLESLR-IQAYYYGFTGSIPSDISAL--SKLQLLDLSLNRLSGTIPSNI 136
            LS         LE+L+ +             ++     S L+ L+LS N++    P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 137 GNLRNLVHLDLGNNNLTGPIPSTLA---RLTNLKYLDLKVTS-------------MKNLT 180
             +  L  L L N  L   +   L      T+++ L L  +                NLT
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 181 WLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
            LD+S N +          L + +   L  N +      S   L  +  + L  +    S
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.4 bits (225), Expect = 3e-20
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 8/164 (4%)

Query: 75  LNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISAL--SKLQLLDLSLNRLSGTI 132
           L               ++ +L +       + +  +    L  + L +LDLS N L+   
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLS--NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 133 PSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGS 192
             +   L  L +  L  NN+      +L  L N++YL+L     ++ T   IS   +   
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL----KRSFTKQSISLASLPKI 320

Query: 193 IPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
                  L   + L++  N + G        L  +  + LS + 
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 9e-20
 Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 15/161 (9%)

Query: 80  QLSQLNFSCFPNLESLRI-QAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN 138
           +LSQL+   F    +L               +       L  LDLS N LS T       
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELT 198
           L NL  L L NN +       L    N            +L  L++S+N+I+   PG   
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFAN-----------SSLKKLELSSNQIKEFSPGCFH 192

Query: 199 ELSRPDCLSLSANKLSGPVP---FSNKQLSTMYIVRLSPNK 236
            + R   L L+  +L   +          +++  + LS ++
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.2 bits (214), Expect = 8e-19
 Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 17/210 (8%)

Query: 44  NYSSDHCKWIGITCNSAGSIIGL-NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYY 102
           +++        +      S   L  L   +++ N    +    F+   NL+ L +   + 
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 103 GFTGSIPSDISAL--SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIP-ST 159
                      +L  S L +L+L+ N++S         L +L  LDLG N +   +    
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 160 LARLTNLKYLDL---KVTS--------MKNLTWLDISNNKIEG--SIPGELTELSRPDCL 206
              L N+  + L   K           + +L  L +    ++   S P     L     L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 207 SLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
            LS N ++       + L  + I+ L  N 
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNN 515

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.8 bits (213), Expect = 9e-19
 Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 19/152 (12%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHL 145
           F+  P+L+ L ++        S PS    L  L +LDLS N ++      +  L  L  L
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 146 DLGNNNLT--------GPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISN 186
           DL +NNL         G     L  L++L  L+L+              +  L  +D+  
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVP 218
           N +                L+L  N ++    
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 21/136 (15%)

Query: 80  QLSQLNFSCFPNLESLRI---------QAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG 130
            ++ +N      LE L I         + + +   G     +  LS L +L+L  N    
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 131 TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK------------VTSMKN 178
                  +L  L  +DLG NNL     S      +LK L+L+              + +N
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610

Query: 179 LTWLDISNNKIEGSIP 194
           LT LD+  N  + +  
Sbjct: 611 LTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 14/130 (10%)

Query: 118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK----- 172
            ++ D S  +L+  +P ++    N+  L+L +N L     +   R + L  LD+      
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 173 ------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLST 226
                    +  L  L++ +N++           +    L L +N +         +   
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 227 MYIVRLSPNK 236
           +  + LS N 
Sbjct: 123 LITLDLSHNG 132

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 141 NLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISNNKI 189
           +    D  +  LT  +P  L   TN+  L+L             T    LT LD+  N I
Sbjct: 5   SHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 190 EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
               P    +L     L+L  N+LS     +    + +  + L  N 
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 18/114 (15%)

Query: 80  QLSQLNFSCFPNLESLRI-QAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIG- 137
              ++    F +L  L+I             S  +    L+ L+L  N ++       G 
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 138 NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEG 191
             RNL  LD+  N              ++ +          + W++ ++  I  
Sbjct: 607 AFRNLTELDMRFNPFDCTCE-------SIAWF---------VNWINETHTNIPE 644

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 6e-23
 Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 76  NAQAQLSQLNFSCFP-----NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG 130
           N   Q  +LNF   P     + ++L +   +            +  +LQ+LDLS   +  
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 131 TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNL 179
                  +L +L  L L  N +        + L++L+ L              +  +K L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 180 TWLDISNNKIEG-SIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238
             L++++N I+   +P   + L+  + L LS+NK+        + L  M ++ LS +  L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD--L 184

Query: 239 GSNFI 243
             N +
Sbjct: 185 SLNPM 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.0 bits (229), Expect = 8e-21
 Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 85  NFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNIGNLRNLV 143
           NF     LE L  Q  +          +  +L  L  LD+S              L +L 
Sbjct: 391 NFLGLEQLEHLDFQ--HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 144 HLDLGNNNLTGPI-PSTLARLTNLKYLDL-----------KVTSMKNLTWLDISNNKIEG 191
            L +  N+      P     L NL +LDL              S+ +L  L++S+N    
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 192 SIPGELTELSRPDCLSLSANKLSGPVP 218
                   L+    L  S N +     
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.3 bits (222), Expect = 6e-20
 Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 80  QLSQLNFSCFPNLESLR-IQAYYYGFTGSIPSDISALSKLQLLDLSLNRL-SGTIPSNIG 137
            +  L    F  L SL+ + A            I  L  L+ L+++ N + S  +P    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 138 NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGEL 197
           NL NL HLDL +N +     + L  L  +  L+L          LD+S N +    PG  
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS---------LDLSLNPMNFIQPGAF 197

Query: 198 TELSRPDCLSLSANKLSGPVPFSN-KQLSTMYIVRLSPNKGLGSNFIIVL 246
            E+     L+L  N  S  V  +  + L+ + + RL   +      +   
Sbjct: 198 KEIRLHK-LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 17/132 (12%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVH 144
           F+   +LE L++      F  +   DI + L  L  LDLS  +L    P+   +L +L  
Sbjct: 441 FNGLSSLEVLKMA--GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRP- 203
           L++ +NN           L +L+ LD              S N I  S   EL       
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDY-------------SLNHIMTSKKQELQHFPSSL 545

Query: 204 DCLSLSANKLSG 215
             L+L+ N  + 
Sbjct: 546 AFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 15/181 (8%)

Query: 68  LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQ----AYYYGFTGSIPSDISALSKLQLLDL 123
                 +   +  L + + S    L +L I+    AY   +   I    + L+ +    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 124 SLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS------MK 177
               +      +        HL+L N          L  L  L +   K  +      + 
Sbjct: 290 VSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347

Query: 178 NLTWLDISNNKI--EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
           +L +LD+S N +  +G         +    L LS N +   +  +   L  +  +    +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 406

Query: 236 K 236
            
Sbjct: 407 N 407

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 27/167 (16%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS--GTIPSNIG 137
           +  Q       +L+ L     +    G        L  L+ LDLS N LS  G    +  
Sbjct: 315 KFGQFPTLKLKSLKRL----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 138 NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGE- 196
              +L +LDL  N +   + S    L  L++LD               ++ ++       
Sbjct: 371 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF-------------QHSNLKQMSEFSV 416

Query: 197 ---LTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
              L  L     L +S              LS++ +++++ N    +
Sbjct: 417 FLSLRNLIY---LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 31/195 (15%), Positives = 55/195 (28%), Gaps = 30/195 (15%)

Query: 80  QLSQLNFSCFPNLESLRIQAYY----YGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSN 135
           ++  +  +    L  + +              I        +L  L L  N  S  +   
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 136 -IGNLRNLVHLDL------GNNNLTGPIPSTLARLTNLKYLDLKVTS------------- 175
            I  L  L    L         NL     S L  L NL   + ++               
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 176 -MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSP 234
            + N++   + +  IE       +       L L   K      F   +L ++  +  + 
Sbjct: 280 CLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTS 334

Query: 235 NKGLGSNFIIVLACL 249
           NKG  +   + L  L
Sbjct: 335 NKGGNAFSEVDLPSL 349

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 23/129 (17%)

Query: 80  QLSQLNFSCFPNLESLRI------QAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP 133
           QL QL+ + F +L SL++            F          L+ LQ+LD SLN +  +  
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNN-----FFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 134 SNIGNL-RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGS 192
             + +   +L  L+L  N+               +     +  +K+   L +   ++E +
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCE--------HQSF---LQWIKDQRQLLVEVERMECA 584

Query: 193 IPGELTELS 201
            P +   + 
Sbjct: 585 TPSDKQGMP 593

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.7 bits (236), Expect = 1e-21
 Identities = 23/171 (13%), Positives = 47/171 (27%), Gaps = 26/171 (15%)

Query: 91  NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150
           +     I +        +         +  ++LS N++S            L  ++L  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 151 NLTG-------PIPSTLARLTNLKYLDL------------KVTSMKNLTWLDISNNKIEG 191
            LT                   L  +DL            + T++  L  +D+S N    
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 192 SIPGE------LTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
             P +      L      +      N+     P       ++  +++  N 
Sbjct: 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 41/206 (19%)

Query: 53  IGITCNSAGSIIGLNLSW-YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSD 111
           +             + S      +N+  Q   +  S    L+  +I       T  +   
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKA 201

Query: 112 ISALSKLQLLDLSLNRLSG-------------------TIPSNIGNLRNLVHLDLGNNNL 152
           +  L+KL+   +  +                       T      NL++L  +++ N   
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 153 TGPIPSTLARLTNLKYLDL-------------------KVTSMKNLTWLDISNNKI-EGS 192
              +P+ L  L  ++ +++                        + +  + I  N +    
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 193 IPGELTELSRPDCLSLSANKLSGPVP 218
           +   L ++ +   L    N+L G +P
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.7 bits (223), Expect = 5e-20
 Identities = 24/151 (15%), Positives = 57/151 (37%), Gaps = 21/151 (13%)

Query: 106 GSIPSDISALSKLQLLDLSLNRL-SGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT 164
               +D     K+Q++ +  N L +  + +++  ++ L  L+   N L G +P+      
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEI 353

Query: 165 NLKYLDLK-----------VTSMKNLTWLDISNNKIEG-SIPGELTELSRPDCLSLSANK 212
            L  L+L                + +  L  ++NK++      +   +S    +  S N+
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 213 LSG-------PVPFSNKQLSTMYIVRLSPNK 236
           +         P+  +  +   +  + LS N+
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.2 bits (214), Expect = 8e-19
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 27/159 (16%)

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG-PIPSTLAR 162
             G +P+   +  KL  L+L+ N+++    +  G    + +L   +N L   P       
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 163 LTNLKYLDL------------------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPD 204
           ++ +  +D                         N++ +++SNN+I        +  S   
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 205 CLSLSANKLSG-------PVPFSNKQLSTMYIVRLSPNK 236
            ++L  N L+            + K    +  + L  NK
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.6 bits (207), Expect = 6e-18
 Identities = 31/235 (13%), Positives = 71/235 (30%), Gaps = 37/235 (15%)

Query: 44  NYSSDHCKW---IGITCNSAGSIIGLNLSWYDVDLNAQ-----AQLSQL----------- 84
           N++ +   W    G++ NS G + GL+L       + +      QL++L           
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLE--GFGASGRVPDAIGQLTELEVLALGSHGEK 118

Query: 85  ------NFSCFPNLESLR-IQAYYYGFTGSIPSDISAL--SKLQLLDLSLNRLSGTIPSN 135
                          S    Q     +  +          S L    ++ +    +I  +
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL------KVTSMKNLTWLDISNNKI 189
                    +   +NN+T  +   + RLT L+   +           +     +    + 
Sbjct: 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 190 EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFII 244
             +   +   L     + +        +P   K L  M ++ ++ N+G+    + 
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 24/138 (17%), Positives = 36/138 (26%), Gaps = 25/138 (18%)

Query: 107 SIPSDISA--LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN------NNLTGPIPS 158
            +  D  A  L  L  +DLS N  S   P+   N   L    + N      N      P 
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 159 TLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP 218
            +    +L  L +              +N I          +S    L +  N       
Sbjct: 561 GITLCPSLTQLQI-------------GSNDIRKVNEKITPNISV---LDIKDNPNISIDL 604

Query: 219 FSNKQLSTMYIVRLSPNK 236
                     +  L  +K
Sbjct: 605 SYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 22/114 (19%)

Query: 107 SIPSDISALSKLQLL------DLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTL 160
             P+     S L+        D   NR     P  I    +L  L +G+N++   +   +
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI 585

Query: 161 ARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
                            N++ LDI +N         +          L  +K  
Sbjct: 586 ---------------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 8e-20
 Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 47/197 (23%)

Query: 68  LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR 127
                  +N   ++  +      +L+  +I       T  I   I  L+KLQ++  + + 
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSP 459

Query: 128 LSG-------------------TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKY 168
            +                        +  NL++L  ++L N      +P  L  L  L+ 
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 169 LDL--------------------KVTSMKNLTWLDISNNKIEGSIP----GELTELSRPD 204
           L++                       +   +    +  N +E         ++ +L    
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL-- 577

Query: 205 CLSLSANKLSGPVPFSN 221
            L    NK+     F  
Sbjct: 578 -LDCVHNKVRHLEAFGT 593

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.1 bits (213), Expect = 1e-18
 Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 19/146 (13%)

Query: 108 IPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLK 167
             + +  + KL LLD   N++   + +  G    L  L L  N +        A    ++
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 168 YLDL------------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDC-----LSLSA 210
            L                 S+  +  +D S NKI          +          ++LS 
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 211 NKLSGPVPFSNKQLSTMYIVRLSPNK 236
           N++           S +  + LS N 
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNL 708

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.8 bits (207), Expect = 6e-18
 Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 26/155 (16%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT-------GPIPST 159
           S   D         + LS N +             +  + L NN +T        P    
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 160 LARLTNLKYLDL------------KVTSMKNLTWLDISNNKIEGSIPGE------LTELS 201
                 L  +DL            + T++  L+ +D+S N    S P +      L    
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFG 782

Query: 202 RPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
                    N++    P       ++  +++  N 
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 9e-14
 Identities = 29/234 (12%), Positives = 64/234 (27%), Gaps = 33/234 (14%)

Query: 26  ETKALLDTGWWNSSFWMANYSSDHCKW---IGITCNSAGSIIGLNLSWYDVDLNAQAQLS 82
              +       +S  W  N++ +   W    G+  ++ G + GL+L+       A+ ++ 
Sbjct: 287 RYYSGTINNTIHSLNW--NFNKELDMWGDQPGVDLDNNGRVTGLSLA----GFGAKGRVP 340

Query: 83  QLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSN-IGNLRN 141
                    L+ L      +  T S            + +   +R+        +   + 
Sbjct: 341 D-AIGQLTELKVLSF--GTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 142 LVHLDL------GNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISN 186
           L   DL       N  +      +   L + +  +L          +  +  L  +  +N
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
           +           E       +    K       S   L  +  V L     +  
Sbjct: 458 SPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 22/114 (19%)

Query: 107 SIPSDISALSKLQLLDLSL------NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTL 160
           S P+     S+L+   +        NR+    P+ I    +L+ L +G+N++   +   L
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL 825

Query: 161 ARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
                             L  LDI++N         +          L  +K  
Sbjct: 826 ---------------TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 13/129 (10%), Positives = 28/129 (21%), Gaps = 37/129 (28%)

Query: 121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLT 180
            +  L+        ++ N   +  L L      G +P  + +LT LK L           
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF--------- 354

Query: 181 WLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
                                         +  +        +  T  +     ++    
Sbjct: 355 ----------------------------GTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 241 NFIIVLACL 249
              + L   
Sbjct: 387 YKKMFLDYD 395

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 25/186 (13%)

Query: 62  SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLL 121
           S   ++LS+     N    L   +FS F  L+ L +                 L  L  L
Sbjct: 33  STKNIDLSF-----NPLKILKSYSFSNFSELQWLDLS--RCEIETIEDKAWHGLHHLSNL 85

Query: 122 DLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---------- 171
            L+ N +    P +   L +L +L      L       + +L  LK L++          
Sbjct: 86  ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 172 --KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDC----LSLSANKLSG--PVPFSNKQ 223
               +++ NL  +D+S N I+     +L  L         L +S N +       F   +
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205

Query: 224 LSTMYI 229
           L  + +
Sbjct: 206 LHELTL 211

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.9 bits (208), Expect = 4e-18
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 16/176 (9%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
           +LS++      + +++ +   +           S  S+LQ LDLS   +          L
Sbjct: 22  KLSKVPDDIPSSTKNIDLS--FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISNNK 188
            +L +L L  N +    P + + LT+L+ L              +  +  L  L++++N 
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 189 IEG-SIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFI 243
           I    +P   + L+    + LS N +        + L     V LS +  +  N I
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD--MSLNPI 193

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 16/196 (8%)

Query: 54  GITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP-SDI 112
              C S   +   +L   D+  N    +S  NF     L+ L  Q  +         S  
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQ--HSTLKRVTEFSAF 420

Query: 113 SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS-TLARLTNLKYLDL 171
            +L KL  LD+S              L +L  L +  N+      S   A  TNL +LDL
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 172 K-----------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
                         ++  L  L++S+N +         +L     L  S N++       
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 221 NKQLSTMYIVRLSPNK 236
                ++    L+ N 
Sbjct: 541 QHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 31/141 (21%), Positives = 46/141 (32%), Gaps = 14/141 (9%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVH 144
           F     L  L I   Y             L+ L  L ++ N       SN+  N  NL  
Sbjct: 420 FLSLEKLLYLDIS--YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISNNKIEGSI 193
           LDL    L          L  L+ L++               + +L+ LD S N+IE S 
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 194 PGELTELSRPDCLSLSANKLS 214
                        +L+ N ++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 32/164 (19%), Positives = 52/164 (31%), Gaps = 17/164 (10%)

Query: 80  QLSQLNFSCFPNLESLR-IQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG-TIPSNIG 137
            +   +   F  L SL  + A            I  L  L+ L+++ N +    +P+   
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 138 NLRNLVHLDLGNNNLTGPIPSTLARLTNLK----YLDL----------KVTSMKNLTWLD 183
           NL NLVH+DL  N +     + L  L         LD+          +      L  L 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 184 ISNNKIEGSIPGE-LTELSRPDCLSLSANKLSGPVPFSNKQLST 226
           +  N    +I    L  L+      L   +          + S 
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 31/205 (15%), Positives = 70/205 (34%), Gaps = 32/205 (15%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDIS------------ 113
           + +  + +          + F C  N+ ++ +      +   +P                
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320

Query: 114 -----ALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL--TNL 166
                 L  L+ L L++N+ S  I      L +L +LDL  N L+     + + L   +L
Sbjct: 321 QFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 167 KYLDL----------KVTSMKNLTWLDISNNKIEGSIP-GELTELSRPDCLSLSANKLSG 215
           ++LDL              ++ L  LD  ++ ++          L +   L +S      
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 216 PVPFSNKQLSTMYIVRLSPNKGLGS 240
                   L+++  ++++ N    +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDN 463

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 25/201 (12%)

Query: 55  ITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYG-------FTGS 107
           I      +  G+ L    +  N     S +  +C  NL  L +     G           
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFN--SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 108 IPSDISALSKLQL--LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
            PS +  L  + +    L+              L N+  + L   ++       + +   
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFK 308

Query: 166 LKYLDLK--------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS--G 215
            + L +            +  L  L ++ NK   SI  +   L     L LS N LS  G
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSG 366

Query: 216 PVPFSNKQLSTMYIVRLSPNK 236
              +S+   +++  + LS N 
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNG 387

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 80  QLSQLNFSCFPNLESLRI------QAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP 133
           QL Q+++  F  L  L++                  S  + L  L  LD S NR+  +  
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNN-----LLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 134 SNIGNLRNLVHLDLGNNNLT 153
                 ++L   +L NN++ 
Sbjct: 539 ILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 130 GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKN 178
           G++   I  + N+      +  L+  +P  +   ++ K +DL             ++   
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLSK-VPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 179 LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215
           L WLD+S  +IE         L     L L+ N +  
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.1 bits (209), Expect = 1e-18
 Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 15/136 (11%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
           + ++ +++L  L +  N+++   P  + NL  L  L++G N ++    + +  LT LK L
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270

Query: 170 DLK---------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
           ++          + ++  L  L ++NN++       +  L+    L LS N ++   P +
Sbjct: 271 NVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA 330

Query: 221 NKQLSTMYIVRLSPNK 236
           +  LS M     +   
Sbjct: 331 S--LSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.8 bits (203), Expect = 8e-18
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 23/157 (14%)

Query: 85  NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVH 144
                 NLE L +       T   P  +S L KL  L +  N++  T  S + NL NL  
Sbjct: 61  GIEYLTNLEYLNL--NGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDL----------KVTSMKNLTWLDISNNKIEGSIP 194
           L L  +N++   P  LA LT +  L+L           +++M  L +L ++ +K++   P
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP 172

Query: 195 -GELTELSRPDCLSLSANKLSGPVPFSN-KQLSTMYI 229
              LT+L     LSL+ N++    P ++   L     
Sbjct: 173 IANLTDLYS---LSLNYNQIEDISPLASLTSLHYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
              + L++     L    ++  +      L ++  L +    +       +  LTNL+YL
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLEYL 71

Query: 170 DLK---------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
           +L          ++++  LT L I  NKI  +    L  L+    L L+ + +S   P +
Sbjct: 72  NLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPLA 129

Query: 221 N 221
           N
Sbjct: 130 N 130

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 22/132 (16%)

Query: 115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-- 172
            + L  L   +N++         +L   +   L   ++T  +      L ++  L +   
Sbjct: 2   AATLATLPAPINQIF-----PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGE 54

Query: 173 -------VTSMKNLTWLDISNNKIEGSIP-GELTELSRPDCLSLSANKLSGPVPFSNKQL 224
                  +  + NL +L+++ N+I    P   L +L+    L +  NK++      N  L
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTN---LYIGTNKITDISALQN--L 109

Query: 225 STMYIVRLSPNK 236
           + +  + L+ + 
Sbjct: 110 TNLRELYLNEDN 121

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           S  S ++ LS+L  L L+ N+L       IG L NL  L L  N++T   P         
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--------- 328

Query: 167 KYLDLKVTSMKNLTWLDISNNKIE 190
                 + S+  +   D +N  I+
Sbjct: 329 ------LASLSKMDSADFANQVIK 346

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 22/168 (13%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHL 145
           F CF  L+ L +          +PS +  LS L+ L LS N+       +  N  +L HL
Sbjct: 274 FHCFSGLQELDLT---ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 146 DLGNNNLTGPIPS-TLARLTNLKYLDL-------------KVTSMKNLTWLDISNNKIEG 191
            +  N     + +  L  L NL+ LDL             ++ ++ +L  L++S N+   
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 192 SIPGELTELSRPDCLSLSANKLSG---PVPFSNKQLSTMYIVRLSPNK 236
                  E  + + L L+  +L       PF N  L  + ++ LS + 
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN--LHLLKVLNLSHSL 436

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 15/170 (8%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
            L+++  +   + E L     +        +  S L  L  LDL+  ++         + 
Sbjct: 23  GLNEIPGTLPNSTECLEFS--FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISNNK 188
             L  L L  N L     + L+    LK+L              + + K L  L + +N 
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 189 IEGSIPGELTELSRPDCLSLSANKLSG--PVPFSNKQLSTMYIVRLSPNK 236
           I      +     +   L    N +        S+ Q +T   + L+ N 
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 23/190 (12%)

Query: 62  SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP-SDISALSKLQL 120
            +  LNLS+     N    L    F   P LE L +   +         S    L  L++
Sbjct: 377 HLQSLNLSY-----NEPLSLKTEAFKECPQLELLDLA--FTRLKVKDAQSPFQNLHLLKV 429

Query: 121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPI---PSTLARLTNLKYLDLK----- 172
           L+LS + L  +       L  L HL+L  N+         ++L  L  L+ L L      
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 173 ------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLST 226
                  TS+K +  +D+S+N++  S    L+ L     L+L++N +S  +P     LS 
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQ 548

Query: 227 MYIVRLSPNK 236
              + L  N 
Sbjct: 549 QRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 37/203 (18%), Positives = 63/203 (31%), Gaps = 27/203 (13%)

Query: 55  ITCNSAGSIIGLNLSWYDVDLN--AQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI 112
           I     G+         +             L  S   +L     +          P+  
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE--DMDDEDISPAVF 248

Query: 113 SALSKLQL--LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLD 170
             L ++ +  ++L  +       +       L  LDL   +L+  +PS L  L+ LK L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLV 307

Query: 171 LK-----------VTSMKNLTWLDISNNKIEGSIP----GELTELSRPDCLSLSANKL-- 213
           L             ++  +LT L I  N     +       L  L     L LS + +  
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE---LDLSHDDIET 364

Query: 214 SGPVPFSNKQLSTMYIVRLSPNK 236
           S       + LS +  + LS N+
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNE 387

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 15/131 (11%)

Query: 86  FSCFPNLESLRIQA-YYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVH 144
           F   P L+ L +Q  ++        + +  L +L++L LS   LS        +L+ + H
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPD 204
           +DL +N LT      L+ L  +              +L++++N I   +P  L  LS+  
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI--------------YLNLASNHISIILPSLLPILSQQR 550

Query: 205 CLSLSANKLSG 215
            ++L  N L  
Sbjct: 551 TINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 18/178 (10%)

Query: 80  QLSQLNFSCFPNLESLRIQA--YYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIG 137
            +  L+     +L+     +          I       +  Q L+    +    I   + 
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 138 N--LRNLVHLDLGNNNLTGPIPSTLARL--TNLKYLDLKV-----------TSMKNLTWL 182
           N  +++L      + +     P+    L   +++ ++L+                 L  L
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 183 DISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
           D++   +   +P  L  LS    L LSANK       S     ++  + +  N     
Sbjct: 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 24/175 (13%), Positives = 57/175 (32%), Gaps = 19/175 (10%)

Query: 80  QLSQLNFSCFPNLESLR-IQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN 138
            +S ++F    N ++L  +       +           KL++LD   N +      ++ +
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 139 LRNL--VHLDLGNNNLTGPIPSTLARLTNLKYLDL-------------KVTSMKNLTWLD 183
           L+    + L+L  N++ G I          + L+              K +++++L    
Sbjct: 176 LQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 184 ISNNKIEGSIPGELTELSRPDC--LSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
             +   E   P     L       ++L  +        +    S +  + L+   
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 14/104 (13%)

Query: 144 HLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISNNKIEGS 192
             +  N  L   IP TL    + + L+              + + NLT+LD++  +I   
Sbjct: 16  TYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 193 IPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
                    R D L L+AN L      +      +  +      
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.9 bits (203), Expect = 7e-18
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 19/168 (11%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
           +L +L+    P L  L               +   L  LQ L L    +  ++P++I NL
Sbjct: 151 RLRELSIRACPELTELPEPLAS----TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISN-N 187
           +NL  L + N+ L+  +   +  L  L+ LDL+                 L  L + + +
Sbjct: 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 188 KIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
            +  ++P ++  L++ + L L        +P    QL    I+ + P+
Sbjct: 265 NLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 1e-16
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
            +P  +   + L+ L L+ N L   +P++I +L  L  L +        +P  LA     
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 167 KYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
                    + NL  L +    I  S+P  +  L     L +  + LS
Sbjct: 177 GEHQ----GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGN---------LRNLVHLDLGNNNLTGPIP 157
           ++P+ I++L++L+ L +        +P  + +         L NL  L L    +   +P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LP 199

Query: 158 STLARLTNLKYLDLK----------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLS 207
           +++A L NLK L ++          +  +  L  LD+       + P      +    L 
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 208 LS-ANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
           L   + L   +P    +L+ +  + L     L  
Sbjct: 260 LKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSR 292

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 11/105 (10%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           ++   I  L KL+ LDL         P   G    L  L L + +    +P  + RLT L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 167 KYLDLK-----------VTSMKNLTWLDISNNKIEGSIPGELTEL 200
           + LDL+           +  +     + +  +             
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 17/121 (14%)

Query: 106 GSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
           GS        S  + L    +         +   +   + D    +         A   N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 166 LKYLDLKVTS------------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213
            +       +                  L++ +  +    P +   LS    +++ A  L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 214 S 214
            
Sbjct: 117 M 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 111 DISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG-PIPSTLARLTNLKYL 169
             S     + + L+ N+++     + G    + +LDL  N +         A    L++L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 170 DL---------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
           +L                L  LD+S+NK+   +  E    +    +SL  NKL   +  +
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKA 232

Query: 221 NKQLSTMYIVRLSPNK 236
            +    +    L  N 
Sbjct: 233 LRFSQNLEHFDLRGNG 248

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.9 bits (195), Expect = 8e-17
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           +I       ++ ++  ++ + L   + S   +  N+  LDL  N L+    + LA  T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 167 KYLDL---------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           + L+L          + S+  L  LD++NN ++     EL      + L  + N +S
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 12/155 (7%)

Query: 89  FPNLESLRI-QAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147
             N    +I +        ++ S   +   ++ LDLS N LS    +++     L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 148 GNNNLTGPIPSTLARLTNLKYLDL------KVTSMKNLTWLDISNNKIEGSIPGELTELS 201
            +N L   +   L  L+ L+ LDL      ++    ++  L  +NN I            
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 202 RPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
               + L+ NK++          S +  + L  N+
Sbjct: 124 N---IYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 39/166 (23%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
            LSQ++ +                            +KL+LL+LS N L      ++ +L
Sbjct: 45  PLSQISAADLAPF-----------------------TKLELLNLSSNVLYE--TLDLESL 79

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL--------KVTSMKNLTWLDISNNKIEG 191
             L  LDL NN +       L    +++ L            +  +    + ++NNKI  
Sbjct: 80  STLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134

Query: 192 SIPGELTELSRPDCLSLSANKLSG-PVPFSNKQLSTMYIVRLSPNK 236
               +    SR   L L  N++             T+  + L  N 
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT-GPIPSTLARLTN 165
            +  +  + + +  + L  N+L   I   +   +NL H DL  N    G +    ++   
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 166 LKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213
           ++ +  +  ++K LT  +     +       L       C  L A   
Sbjct: 264 VQTVAKQ--TVKKLTGQNEEECTVP-----TLGHYGAYCCEDLPAPFA 304

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 85  NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVH 144
                 N++ L I       T   P  IS LS L+ L +    ++     N+  L +L  
Sbjct: 61  GIEYAHNIKDLTI--NNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDLK----------VTSMKNLTWLDISNNKIEGSIP 194
           LD+ ++     I + +  L  +  +DL           + ++  L  L+I  + +     
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG 176

Query: 195 -GELTELSRPDCLSLSANKLSG 215
             +  +L++   L   +  + G
Sbjct: 177 IEDFPKLNQ---LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 14/137 (10%)

Query: 113 SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK 172
           S         L  +  +         + +L ++ L N N+T      +    N+K L + 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74

Query: 173 ---------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQ 223
                    ++ + NL  L I    +       L+ L+    L +S +     +      
Sbjct: 75  NIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 224 LSTMYIVRLSPNKGLGS 240
           L  +  + LS N  +  
Sbjct: 135 LPKVNSIDLSYNGAITD 151

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.5 bits (196), Expect = 1e-16
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 111 DISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG-PIPSTLARLTNLKYL 169
             S     + + L+ N+++     + G    + +LDL  N +         A    L++L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 170 DL---------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
           +L                L  LD+S+NK+   +  E    +    +SL  NKL   +  +
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKA 232

Query: 221 NKQLSTMYIVRLSPNK 236
            +    +    L  N 
Sbjct: 233 LRFSQNLEHFDLRGNG 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.4 bits (193), Expect = 3e-16
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           +I       ++ ++  ++ + L   + S   +  N+  LDL  N L+    + LA  T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 167 KYLDL---------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           + L+L          + S+  L  LD++NN ++     EL      + L  + N +S
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 4e-16
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 12/155 (7%)

Query: 89  FPNLESLRI-QAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147
             N    +I +        ++ S   +   ++ LDLS N LS    +++     L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 148 GNNNLTGPIPSTLARLTNLKYLDL------KVTSMKNLTWLDISNNKIEGSIPGELTELS 201
            +N L   +   L  L+ L+ LDL      ++    ++  L  +NN I            
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 202 RPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
               + L+ NK++          S +  + L  N+
Sbjct: 124 N---IYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 39/166 (23%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
            LSQ++ +                            +KL+LL+LS N L      ++ +L
Sbjct: 45  PLSQISAADLAPF-----------------------TKLELLNLSSNVLYE--TLDLESL 79

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL--------KVTSMKNLTWLDISNNKIEG 191
             L  LDL NN +       L    +++ L            +  +    + ++NNKI  
Sbjct: 80  STLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134

Query: 192 SIPGELTELSRPDCLSLSANKLSG-PVPFSNKQLSTMYIVRLSPNK 236
               +    SR   L L  N++             T+  + L  N 
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 15/144 (10%), Positives = 37/144 (25%), Gaps = 15/144 (10%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNL-TGPIPSTLARLTN 165
            +  +  + + +  + L  N+L   I   +   +NL H DL  N    G +    ++   
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 166 LKYLDLKV---------TSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG- 215
           ++ +  +                T         E         L        +     G 
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 216 ---PVPFSNKQLSTMYIVRLSPNK 236
               +    +  +    +     +
Sbjct: 324 ETERLECERENQARQREIDALKEQ 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 11/125 (8%), Positives = 30/125 (24%), Gaps = 3/125 (2%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL 125
            +   Y  +        +L          L  Q      T  +  +    ++ + +D   
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG---SETERLECERENQARQREIDALK 345

Query: 126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDIS 185
            +    I       +  + L+     L   + +       L     +      L      
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 186 NNKIE 190
            + ++
Sbjct: 406 QSPLQ 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 22/156 (14%)

Query: 85  NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVH 144
             +         +       T ++    + L ++  L      +       +  L NL  
Sbjct: 19  TDTALAEKMKTVL--GKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQ 72

Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISNNKIEGSIP- 194
           ++  NN LT   P  L  LT L  + +          + ++ NLT L + NN+I    P 
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 130

Query: 195 GELTELSRPDCLSLSANKLSGPVPFSN-KQLSTMYI 229
             LT L+R   L LS+N +S     S    L  +  
Sbjct: 131 KNLTNLNR---LELSSNTISDISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 80  QLSQL-NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN 138
           Q+S +   +    L +L +           P  IS L  L  L L  N +S   P  + +
Sbjct: 276 QISNISPLAGLTALTNLELN--ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS 329

Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISNNKI 189
           L  L  L   NN ++      LA LTN+ +L            + ++  +T L +++   
Sbjct: 330 LTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 387

Query: 190 EGSIPGELTELSRPDCLSLSANKLSGPVPFSN 221
             +       +S P+ +      L  P   S+
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALIAPATISD 419

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 23/162 (14%)

Query: 80  QLSQL-NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN 138
           ++S +   +   NLESL         +   P  +  L+ L  L L+ N+L       + +
Sbjct: 188 KVSDISVLAKLTNLESLIA--TNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLAS 241

Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---------KVTSMKNLTWLDISNNKI 189
           L NL  LDL NN ++   P  L+ LT L  L L          +  +  LT L+++ N++
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 299

Query: 190 EGSIP-GELTELSRPDCLSLSANKLSGPVPFSN-KQLSTMYI 229
           E   P   L  L+    L+L  N +S   P S+  +L  ++ 
Sbjct: 300 EDISPISNLKNLTY---LTLYFNNISDISPVSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 38/180 (21%)

Query: 85  NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG-------------- 130
             +   NL  L +  +    T   P  +  L+ L  L+LS N +S               
Sbjct: 107 PLANLTNLTGLTL--FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162

Query: 131 -----TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSM 176
                T    + NL  L  LD+ +N ++    S LA+LTNL+ L            +  +
Sbjct: 163 FGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGIL 220

Query: 177 KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
            NL  L ++ N+++    G L  L+    L L+ N++S   P S   L+ +  ++L  N+
Sbjct: 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQ 276

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           S  S ++ L+ +  L    N++S   P  + NL  +  L L +   T    +  A ++  
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 167 KYLDL---------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPV 217
             +            ++   + T  DI+ N             S+P  +       SG V
Sbjct: 402 NTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTV 460

Query: 218 P 218
            
Sbjct: 461 T 461

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 33/194 (17%), Positives = 72/194 (37%), Gaps = 16/194 (8%)

Query: 55  ITCNSAGSIIGL-NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI- 112
           +   S  +  GL +L    ++      L+ +      +L  L +    +    +I     
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKC---NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 113 SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL- 171
             L +L++L++S      T+  N     NL  L + + NLT      +  L  L++L+L 
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256

Query: 172 --KVTS--------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN 221
              +++        +  L  + +   ++    P     L+    L++S N+L+       
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 222 KQLSTMYIVRLSPN 235
             +  +  + L  N
Sbjct: 317 HSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.3 bits (175), Expect = 6e-14
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 17/161 (10%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSL 125
                D+  N    L+Q  F+ FP+LE L +         ++     + L  L+ L L  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELN---ENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 126 NRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS------ 175
           NRL   IP  +   L NL  LD+  N +   +      L NLK L++    +        
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 176 --MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
             + +L  L +    +       L+ L     L L    ++
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 14/170 (8%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNI-G 137
            +S +    F NL +LR           IP  + + LS L  LD+S N++   +   +  
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ 125

Query: 138 NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS--------MKNLTWLDISN 186
           +L NL  L++G+N+L        + L +L+ L L    +TS        +  L  L + +
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
             I          L R   L +S       +  +      +  + ++   
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           ++P  I   ++ +LLDL  NR+         +  +L  L+L  N ++   P     L NL
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 167 KYLDLK-----------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           + L L+            T + NLT LDIS NKI   +     +L     L +  N L 
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 18/146 (12%)

Query: 86  FSCFPNLESL-----RIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLR 140
              FP L +L              +   P     L  L L +  +   SG   +      
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 141 NLVHLDLGNNNLTG-PIPSTLARLTNLKYLDL---KVTSM-----KNLTWLDISNNKIEG 191
            L  LDL +N+L       +    + L  L+L    +  +       L+ LD+S N+++ 
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR 288

Query: 192 -SIPGELTELSRPDCLSLSANKLSGP 216
              P EL ++     LSL  N     
Sbjct: 289 NPSPDELPQVGN---LSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 22/170 (12%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL 125
             L+  ++++   A    L  +  P+L  L ++   +    +  +++    K  L  LS+
Sbjct: 98  QELTLENLEVTGTAPPPLLEAT-GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 126 --NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLA----RLTNLKYLDLK------- 172
                       +     L  LDL +N   G      A    +   L+ L L+       
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 173 -------VTSMKNLTWLDISNNKIEGSIPGEL-TELSRPDCLSLSANKLS 214
                    +   L  LD+S+N +  +         S+ + L+LS   L 
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 17/124 (13%)

Query: 115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT--NLKYLDLK 172
           L +L +    +          +  +  L  L L N  +TG  P  L   T  +L  L+L+
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 173 ---------------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPV 217
                                L  L I+          ++        L LS N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 218 PFSN 221
              +
Sbjct: 190 GLIS 193

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 109 PSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKY 168
           P ++S  + LQ      + L+  +P    N+++        +      P        +  
Sbjct: 5   PRNVS-NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 169 LDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMY 228
             L+    +    L+++N  +  S+P     L     L  S N L+  +P   + L ++ 
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLL 117

Query: 229 IVRLSPNK 236
           +   +   
Sbjct: 118 VDNNNLKA 125

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 34/175 (19%)

Query: 81  LSQLNFSCFP----NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPS-- 134
           L+ L  S  P    +LESL         T  +P    +L  L + + +L  LS   P   
Sbjct: 78  LNNLGLSSLPELPPHLESLVA--SCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLE 134

Query: 135 -------------NIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS------ 175
                         + N   L  +D+ NN+L   +P     L  +   + ++        
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQN 193

Query: 176 MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN-KQLSTMYI 229
           +  LT +   NN ++  +P     L     +    N L       N   L+T+Y 
Sbjct: 194 LPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNILEELPELQNLPFLTTIYA 244

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 113 SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL- 171
                L+ +    N+L       + NL  L  +   NN+L            +L+ +   
Sbjct: 170 DLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAG 223

Query: 172 --------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQ 223
                   ++ ++  LT +   NN ++ ++P     L     L++  N L+  +P   + 
Sbjct: 224 NNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA---LNVRDNYLTD-LPELPQS 278

Query: 224 LSTMYIVRLSPNK 236
           L+ + +     + 
Sbjct: 279 LTFLDVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 43/161 (26%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLR-------------NLVHLDLGNNNLT 153
            +P +   +        + +      P   G  R                 L+L N  L+
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 154 G-------------------PIPSTLARLTNLKYLDLKVTS----MKNLTWLDISNNKIE 190
                                +P     L +L   +  + +       L +L +SNN++E
Sbjct: 85  SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 144

Query: 191 GSIP--GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI 229
             +P     + L     + +  N L   +P     L  +  
Sbjct: 145 -KLPELQNSSFLKI---IDVDNNSLKK-LPDLPPSLEFIAA 180

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 22/115 (19%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
            +P    +L+ L + +   + LS   P       NL +L+  +N +   +        +L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRS-LCDL---PPSL 319

Query: 167 KYLDL---KVTS----MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           + L++   K+         L  L  S N +   +P     L +   L +  N L 
Sbjct: 320 EELNVSNNKLIELPALPPRLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 31/131 (23%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT-- 164
            +P+      +L+ L  S N L+  +P    NL+    L +  N L    P     +   
Sbjct: 331 ELPALPP---RLERLIASFNHLA-EVPELPQNLK---QLHVEYNPLRE-FPDIPESVEDL 382

Query: 165 --------------NLKYLDLKV-------TSMKNLTWLDISNNKIEGSIPGELTELSRP 203
                         NLK L ++           +++  L +++ ++            + 
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKL 442

Query: 204 DCLSLSANKLS 214
           +      +   
Sbjct: 443 EDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 15/95 (15%)

Query: 81  LSQLNFSCFP----NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNI 136
           +       FP    ++E LR+          +         L+ L +  N L    P   
Sbjct: 364 VEYNPLREFPDIPESVEDLRM-------NSHLAEVPELPQNLKQLHVETNPLR-EFPDIP 415

Query: 137 GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171
            ++ +L    + +  +  P          L+    
Sbjct: 416 ESVEDL---RMNSERVVDPYEFAHETTDKLEDDVF 447

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 36/184 (19%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDIS-----------------ALSKLQLLD 122
           +L+ ++ S  P+L    +    Y    ++   I+                    +L +L 
Sbjct: 182 RLTHVDLSLIPSLFHANVS---YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 238

Query: 123 LSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------- 172
           L  N L  T  + + N   LV +DL  N L   +     ++  L+ L +           
Sbjct: 239 LQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296

Query: 173 VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRL 232
              +  L  LD+S+N +   +     +  R + L L  N +   +  S     T+  + L
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTL 352

Query: 233 SPNK 236
           S N 
Sbjct: 353 SHND 356

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 28/200 (14%)

Query: 54  GITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI- 112
              C  +            +D+  Q            N + +  +         +P+ + 
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFK---NSTMRKLPAALL 71

Query: 113 SALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171
            +  +++LL+L+  ++   I +        +  L +G N +    P     +  L  L L
Sbjct: 72  DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130

Query: 172 ---KVTS--------MKNLTWLDISNNKIEGSIPGE----LTELSRPDCLSLSANKLSGP 216
               ++S           LT L +SNN +E  I  +     T L     L LS+N+L+  
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN---LQLSSNRLTH- 185

Query: 217 VPFSNKQLSTMYIVRLSPNK 236
           V  S   + +++   +S N 
Sbjct: 186 VDLSL--IPSLFHANVSYNL 203

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 33/173 (19%)

Query: 80  QLSQLNFSCFPNLESL--------RIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSG 130
            +  L    F N+  L         +         S+P  I     KL  L +S N L  
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLS--------SLPRGIFHNTPKLTTLSMSNNNLE- 160

Query: 131 TIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL------KVTSMKNLTWLD 183
            I  +      +L +L L +N LT  +  +L  + +L + ++       +     +  LD
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTH-VDLSL--IPSLFHANVSYNLLSTLAIPIAVEELD 217

Query: 184 ISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
            S+N I         EL+    L L  N L+      N     +  V LS N+
Sbjct: 218 ASHNSINVVRGPVNVELTI---LKLQHNNLTDTAWLLN--YPGLVEVDLSYNE 265

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 33/119 (27%)

Query: 80  QLSQLNFSCFPNLESL--------RIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGT 131
           +L ++ +  F  ++ L        R+         ++      +  L++LDLS N L   
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLV--------ALNLYGQPIPTLKVLDLSHNHLL-H 315

Query: 132 IPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIE 190
           +  N      L +L L +N++                  LK+++   L  L +S+N  +
Sbjct: 316 VERNQPQFDRLENLYLDHNSIV----------------TLKLSTHHTLKNLTLSHNDWD 358

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 36/184 (19%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDIS-----------------ALSKLQLLD 122
           +L+ ++ S  P+L    +    Y    ++   I+                    +L +L 
Sbjct: 176 RLTHVDLSLIPSLFHANVS---YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 232

Query: 123 LSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------- 172
           L  N L  T  + + N   LV +DL  N L   +     ++  L+ L +           
Sbjct: 233 LQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290

Query: 173 VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRL 232
              +  L  LD+S+N +   +     +  R + L L  N +   +  S     T+  + L
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTL 346

Query: 233 SPNK 236
           S N 
Sbjct: 347 SHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 39/199 (19%), Positives = 76/199 (38%), Gaps = 30/199 (15%)

Query: 57  CNSAGSIIGLNLSWYDVDLNAQAQ--LSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-S 113
                S +  +  +YDV ++ Q Q            N + +  +         +P+ +  
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFK---NSTMRKLPAALLD 66

Query: 114 ALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL- 171
           +  +++LL+L+  ++   I +        +  L +G N +    P     +  L  L L 
Sbjct: 67  SFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 172 --KVTS--------MKNLTWLDISNNKIEGSIPGE----LTELSRPDCLSLSANKLSGPV 217
              ++S           LT L +SNN +E  I  +     T L     L LS+N+L+  V
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN---LQLSSNRLTH-V 180

Query: 218 PFSNKQLSTMYIVRLSPNK 236
             S   + +++   +S N 
Sbjct: 181 DLSL--IPSLFHANVSYNL 197

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 33/173 (19%)

Query: 80  QLSQLNFSCFPNLESL--------RIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSG 130
            +  L    F N+  L         +         S+P  I     KL  L +S N L  
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLS--------SLPRGIFHNTPKLTTLSMSNNNLE- 154

Query: 131 TIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL------KVTSMKNLTWLD 183
            I  +      +L +L L +N LT  +  +L  + +L + ++       +     +  LD
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTH-VDLSL--IPSLFHANVSYNLLSTLAIPIAVEELD 211

Query: 184 ISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
            S+N I         EL+    L L  N L+      N     +  V LS N+
Sbjct: 212 ASHNSINVVRGPVNVELTI---LKLQHNNLTDTAWLLN--YPGLVEVDLSYNE 259

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 25/126 (19%)

Query: 80  QLSQL-NFSCFPNLESL-----RIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTI 132
            L+       +P L  +      ++         I       + +L+ L +S NRL   +
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELE--------KIMYHPFVKMQRLERLYISNNRLV-AL 287

Query: 133 PSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL--------KVTSMKNLTWLDI 184
                 +  L  LDL +N+L   +     +   L+ L L        K+++   L  L +
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346

Query: 185 SNNKIE 190
           S+N  +
Sbjct: 347 SHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 18/149 (12%), Positives = 48/149 (32%), Gaps = 13/149 (8%)

Query: 78  QAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNI- 136
           Q +   ++ +   +     +             +   L+  +++    + +   +P+ + 
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 65

Query: 137 GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV-----------TSMKNLTWLDIS 185
            + R +  L+L +  +        A    ++ L +              ++  LT L + 
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 186 NNKIEGSIPGELTELSRPDCLSLSANKLS 214
            N +     G      +   LS+S N L 
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 19/101 (18%)

Query: 80  QLSQLN--FSCFPNLESL-----RIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTI 132
           +L  LN      P L+ L      +          +  +     +L+ L L  N +  T+
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLL--------HVERNQPQFDRLENLYLDHNSIV-TL 333

Query: 133 PSNIGNLRNLVHLDLGNNNLTG-PIPSTLARLTNLKYLDLK 172
              +     L +L L +N+     + +    +      D  
Sbjct: 334 K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 372

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 31/169 (18%)

Query: 64  IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDL 123
           +  +++   +  N    L+ L  +  P L +L +       T S+P     L +L +   
Sbjct: 59  LPAHITTLVIPDN---NLTSLP-ALPPELRTLEV--SGNQLT-SLPVLPPGLLELSIFSN 111

Query: 124 SLNRLSGTIPSNIGNLR--------------NLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
            L  L   +PS +  L                L  L + +N L   +P+  + L  L   
Sbjct: 112 PLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAY 169

Query: 170 DLKVTS----MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           + ++TS       L  L +S+N++  S+P   +EL +   L    N+L+
Sbjct: 170 NNQLTSLPMLPSGLQELSVSDNQLA-SLPTLPSELYK---LWAYNNRLT 214

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.2 bits (177), Expect = 3e-14
 Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 34/183 (18%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126
            L    V  N   QL+ L  +    L  L    Y    T S+P   S    LQ L +S N
Sbjct: 142 GLQELSVSDN---QLASLP-ALPSELCKLWA--YNNQLT-SLPMLPS---GLQELSVSDN 191

Query: 127 RLSGTIPSNIGNLR-----------------NLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
           +L+ ++P+    L                   L  L +  N LT  +P   + L  L   
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVLPSELKELMVS 249

Query: 170 DLKVTS----MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLS 225
             ++TS       L  L +  N++   +P  L  LS    ++L  N LS     + ++++
Sbjct: 250 GNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

Query: 226 TMY 228
           +  
Sbjct: 309 SAP 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.6 bits (165), Expect = 1e-12
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 28/122 (22%)

Query: 115 LSKLQLLDLSLNRLSGTIPSNIGN------------------LRNLVHLDLGNNNLTGPI 156
            +   +L++  + L+ T+P  +                       L  L++  N LT  +
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-L 96

Query: 157 PSTLARLTNLKYLDLKVTSM----KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANK 212
           P     L  L      +T +      L  L I  N++  S+P     L     LS+S N+
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLPPGLQE---LSVSDNQ 152

Query: 213 LS 214
           L+
Sbjct: 153 LA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 35/149 (23%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLR-----------------NLVHLDLGN 149
           S+P+  S L KL   +  L  L    P+    L+                  L  L +  
Sbjct: 195 SLPTLPSELYKLWAYNNRLTSL----PALPSGLKELIVSGNRLTSLPVLPSELKELMVSG 250

Query: 150 NNLTGPIPSTLARLTNLKYLDLK----------VTSMKNLTWLDISNNKIEGSIPGELTE 199
           N LT  +P      + L  L +           +  + + T +++  N +       L E
Sbjct: 251 NRLTS-LP---MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306

Query: 200 LSRPDCLSLSANKLSGPVPFSNKQLSTMY 228
           ++     S    +       + ++   ++
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALH 335

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 42/164 (25%), Positives = 57/164 (34%), Gaps = 19/164 (11%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
            L   + +       L            +  D   L  L  LDLS N+L  ++P     L
Sbjct: 42  LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTL 99

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV-----------TSMKNLTWLDISNNK 188
             L  LD+  N LT      L  L  L+ L LK            T    L  L ++NN 
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 189 IEGSIP-GELTELSRPDCLSLSANKLSGPVP---FSNKQLSTMY 228
           +   +P G L  L   D L L  N L   +P   F +  L   +
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 22/122 (18%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           ++P D+       +L LS N L     + +     L  L+L    LT         L  L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVL 79

Query: 167 KYLDL---KVTS-------MKNLTWLDISNNKIEGSIPG----ELTELSRPDCLSLSANK 212
             LDL   ++ S       +  LT LD+S N++  S+P      L EL     L L  N+
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE---LYLKGNE 135

Query: 213 LS 214
           L 
Sbjct: 136 LK 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 5e-14
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 16/170 (9%)

Query: 89  FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG 148
             + ++L +   +            +  +LQ+LDLS   +         +L +L  L L 
Sbjct: 27  PFSTKNLDLS--FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 149 NNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISNNKI-EGSIPGE 196
            N +        + L++L+ L              +  +K L  L++++N I    +P  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 197 LTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVL 246
            + L+  + L LS+NK+        + L  M ++ LS +  L  N +  +
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD--LSLNPMNFI 192

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 33/168 (19%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQ-------AYYYGFTGSIPSDISALSKL 118
           L+LS+     N    +S  NF     LE L  Q       + +  F          L  L
Sbjct: 378 LDLSF-----NGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLS--------LRNL 423

Query: 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS-TLARLTNLKYLDL---KVT 174
             LD+S              L +L  L +  N+            L NL +LDL   ++ 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 175 S--------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
                    + +L  L++++N+++    G    L+    + L  N   
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 28/164 (17%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126
           N+S + +      ++   +FS     + L          G  P+    L  L+ L  + N
Sbjct: 283 NVSSFSLVSVTIERVK--DFSYNFGWQHLE---LVNCKFGQFPTL--KLKSLKRLTFTSN 335

Query: 127 RLSGTIPSNIGNLRNLVHLDLGNNNLT--GPIPSTLARLTNLKYLDL----------KVT 174
           +      S + +L +L  LDL  N L+  G    +    T+LKYLDL             
Sbjct: 336 KGG-NAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 175 SMKNLTWLDISNNKI----EGSIPGELTELSRPDCLSLSANKLS 214
            ++ L  LD  ++ +    E S+   L  L     L +S     
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY---LDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 36/176 (20%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQL----LDLSLNRLSGTIPSNIGNLRN 141
           FS   NLE L +            +D+  L ++ L    LDLSLN ++  I         
Sbjct: 145 FSNLTNLEHLDL--SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 142 LVHLDLGNNNLTGPIPST-LARLTNLKYLDLKVTS--------------MKNLTWLDISN 186
           L  L L NN  +  +  T +  L  L+   L +                ++ L  L I  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 187 NKIEG------SIPGELTELSRPDCLSLSANKLSGPVPFS-NKQLSTMYIVRLSPN 235
            ++         I      L+     SL +  +     FS N     + +V     
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 45/198 (22%)

Query: 80  QLSQLNFSCFPNLESLRIQA------YYYGFTG-----------------SIPSDI-SAL 115
           QL +L       L+ LR+            F G                  I +     +
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---K 172
            KL  + ++   ++ TIP   G   +L  L L  N +T    ++L  L NL  L L    
Sbjct: 171 KKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 173 VTS--------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG------PVP 218
           +++          +L  L ++NNK+   +PG L +      + L  N +S         P
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 219 FSNKQLSTMYIVRLSPNK 236
             N + ++   V L  N 
Sbjct: 287 GYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 36/159 (22%)

Query: 80  QLSQLNFSCFPNLESL-----RIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIP 133
            ++ +     P+L  L     +I          + +     L+ L  L LS N +S  + 
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKIT--------KVDAASLKGLNNLAKLGLSFNSIS-AVD 232

Query: 134 SNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-----------------KVTS 175
           +    N  +L  L L NN L   +P  LA    ++ + L                   T 
Sbjct: 233 NGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 176 MKNLTWLDISNNKIEGSI--PGELTELSRPDCLSLSANK 212
             + + + + +N ++     P     +     + L   K
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
            +P D+       LLDL  N+++     +  NL+NL  L L NN ++   P   A L  L
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 167 KYLDL---KVTSM-----KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           + L L   ++  +     K L  L +  N+I          L++   + L  N L 
Sbjct: 103 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 43/178 (24%), Positives = 65/178 (36%), Gaps = 33/178 (18%)

Query: 80  QLSQLN---FSCFPNLESL-----RIQAYYYGFTGSIPSDI-SALSKLQLLDLS-LNRLS 129
           +L+ +    F     L+ L      I+        SIPS   + +  L+ LDL  L RLS
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE--------SIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 130 GTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMK 177
             I       L NL +L+L   NL   IP  L  L  L  LDL               + 
Sbjct: 175 -YISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 178 NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
           +L  L +  ++I+         L     ++L+ N L+         L  +  + L  N
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 19/142 (13%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVH 144
            SC      +            +P  IS     +LL+L  N++   I  N   +LR+L  
Sbjct: 39  CSCSNQFSKVICV--RKNLR-EVPDGIST--NTRLLNLHENQIQ-IIKVNSFKHLRHLEI 92

Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS--------MKNLTWLDISNNKIEGSI 193
           L L  N++          L NL  L+L   ++T+        +  L  L + NN IE   
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152

Query: 194 PGELTELSRPDCLSLS-ANKLS 214
                 +     L L    +LS
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLS 174

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 74  DLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP 133
           DL    +LS ++   F  L +LR           IP +++ L KL  LDLS N LS  I 
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLS-AIR 223

Query: 134 SNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTW 181
                 L +L  L +  + +     +    L +L  ++L             T + +L  
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

Query: 182 LDISNN 187
           + + +N
Sbjct: 284 IHLHHN 289

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 20/139 (14%)

Query: 115 LSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-- 171
           L+ L  L LS N L+  I S     + NL +LDL +N+L        + L  L+ L L  
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 172 -KVTS--------MKNLTWLDISNNKIEGSIPGE----LTELSRPDCLSLSANKLSG--P 216
             +          M  L  L +S N+I    P E      +L +   L LS+NKL     
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 217 VPFSNKQLSTMYIVRLSPN 235
                        + L  N
Sbjct: 181 TDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 23/112 (20%)

Query: 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPST-LARLTNLKYLDL---KVT 174
            +L  S  +L   +P ++        LDL +NNL+         RLTNL  L L    + 
Sbjct: 21  NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 175 S--------MKNLTWLDISNNKIEGSIPGE----LTELSRPDCLSLSANKLS 214
                    + NL +LD+S+N +  ++       L  L     L L  N + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEV---LLLYNNHIV 125

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 17/135 (12%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
            +P D+S   K  +L++S N +S    S+I +L  L  L + +N +     S       L
Sbjct: 14  HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 167 KYLDLKVTSMK--------NLTWLDISNNKI----EGSIPGELTELSRPDCLSLSANKLS 214
           +YLDL    +         NL  LD+S N           G +++L     L LS   L 
Sbjct: 72  EYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF---LGLSTTHLE 128

Query: 215 GPVPFSNKQLSTMYI 229
                    L+   +
Sbjct: 129 KSSVLPIAHLNISKV 143

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 29/161 (18%), Positives = 68/161 (42%), Gaps = 17/161 (10%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126
           N++  +  ++    +  L  S       L         T ++  +   L++L+ L L +N
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDF--SNNLLTDTVFENCGHLTELETLILQMN 358

Query: 127 RLSGTIPSNIG---NLRNLVHLDLGNNNLT-GPIPSTLARLTNLKYLDLKVTSMK----- 177
           +L   +         +++L  LD+  N+++        +   +L  L++    +      
Sbjct: 359 QLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417

Query: 178 ----NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
                +  LD+ +NKI+ SIP ++ +L     L++++N+L 
Sbjct: 418 CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 7e-12
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 22/171 (12%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLS 124
              S  +V L  Q      ++S   +L++L I        G   S I    S + + + +
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYS-GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 125 LNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK------------ 172
           ++            +   +HLD  NN LT  +      LT L+ L L+            
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368

Query: 173 -VTSMKNLTWLDISNNKIEGSIPGE----LTELSRPDCLSLSANKLSGPVP 218
             T MK+L  LDIS N +              L     L++S+N L+  + 
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS---LNMSSNILTDTIF 416

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 67  NLSWYDVDLNA-QAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL 125
           +L   D+  N+      + + S   +L SL +       T +I   +    ++++LDL  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM--SSNILTDTIFRCL--PPRIKVLDLHS 430

Query: 126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171
           N++  +IP  +  L  L  L++ +N L         RLT+L+ + L
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 24/104 (23%)

Query: 56  TCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFP-NLESL-----RIQAYYYGFTGSIP 109
            C+   S++ LN+S           L+   F C P  ++ L     +I+        SIP
Sbjct: 394 DCSWTKSLLSLNMS--------SNILTDTIFRCLPPRIKVLDLHSNKIK--------SIP 437

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNL 152
             +  L  LQ L+++ N+L  ++P  I   L +L  + L  N  
Sbjct: 438 KQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 20/161 (12%)

Query: 67  NLSWYDVDLNAQAQLSQLNFS--CFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLS 124
           ++       +      Q  F+     ++  L +   +             L  L++L+L+
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS--HGFVFSLNSRVFETLKDLKVLNLA 298

Query: 125 LNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS------ 175
            N+++         L NL  L+L  N L     S    L  + Y+DL    +        
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 176 --MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
             ++ L  LD+ +N +       +  +     + LS NKL 
Sbjct: 359 KFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 18/163 (11%)

Query: 80  QLSQLNFSCFPNLESLR-IQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNIG 137
            +  +  S FP LE L+ ++        +I  +    L  L++LDL  +++    P    
Sbjct: 35  YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94

Query: 138 NLRNLVHLDLGNNNLTGPI--PSTLARLTNLKYLDL------------KVTSMKNLTWLD 183
            L +L  L L    L+  +        L  L  LDL                + +L  +D
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 184 ISNNKIEGSIPGELTELSRPD--CLSLSANKLSGPVPFSNKQL 224
            S+N+I      EL  L        SL+AN L   V     + 
Sbjct: 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 5e-12
 Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPI-PSTLARLTN 165
            +P     L+  + L LS N +     S+   L  L  L+LG+      I       L N
Sbjct: 18  QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 166 LKYLDLK-----------VTSMKNLTWLDISNNKIEGSI--PGELTELSRPDCLSLSANK 212
           L+ LDL               + +L  L +    +  ++   G    L     L LS N+
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 213 LSG-PVPFSNKQLSTMYIVRLSPNK 236
           +    +  S  +L+++  +  S N+
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQ 159

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 16/141 (11%)

Query: 80  QLSQLNFSCF---PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG-TIPSN 135
           ++  L+   F    +L  LR+                 L  L  LDLS N++    +  +
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG 195
            G L +L  +D  +N +       L  L               L++  ++ N +   +  
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-----------TLSFFSLAANSLYSRVSV 192

Query: 196 ELTELSRPDC-LSLSANKLSG 215
           +  +   P   + L    +SG
Sbjct: 193 DWGKCMNPFRNMVLEILDVSG 213

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 27/183 (14%)

Query: 79  AQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN 138
             L     S F +L +  + +      G   +    +  L++LD+S N  +  I  N  N
Sbjct: 169 EPLQGKTLS-FFSLAANSLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNFSN 226

Query: 139 ------------LRNLVHLDLGNNNLTGPIPSTLARL--TNLKYLDLK-----------V 173
                         +++    G +N+  P  +T A L  +++++LDL             
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 174 TSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLS 233
            ++K+L  L+++ NKI          L     L+LS N L      +   L  +  + L 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 234 PNK 236
            N 
Sbjct: 347 KNH 349

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 4/199 (2%)

Query: 56  TCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISAL 115
           T +   S+  L L    + L  + +L    F    +L+ L +   +       P   S L
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN--HNYLNSLPPGVFSHL 503

Query: 116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS 175
           + L+ L L+ NRL+  +  N     NL  LD+  N L  P P     L+ L     K   
Sbjct: 504 TALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC 561

Query: 176 MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
              L+      N    +I G   ++      S S   L         +   +  ++ S  
Sbjct: 562 ECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621

Query: 236 KGLGSNFIIVLACLLAVKR 254
                   + L  +L V +
Sbjct: 622 IVCTVTLTLFLMTILTVTK 640

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 5e-13
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 16/151 (10%)

Query: 85  NFSCFPNLESLRIQAYYYG---FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRN 141
            FS    ++ +R          F           + +++L L+   L  T+  ++  L  
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLL 464

Query: 142 LVHLDLGNNNLTGPIPSTLARLTNLKYLDL---------KVTSMKNLTWLDISNNKIEG- 191
           + HLDL +N L   +P  LA L  L+ L            V ++  L  L + NN+++  
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 523

Query: 192 SIPGELTELSRPDCLSLSANKLSGPVPFSNK 222
           +    L    R   L+L  N L        +
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 27/206 (13%), Positives = 56/206 (27%), Gaps = 14/206 (6%)

Query: 39  SFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQ 98
              +               N    +   +L    ++              +   +S +  
Sbjct: 275 LLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLP---QHTFRVIWTGSDSQKEC 331

Query: 99  AYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS 158
                       D +   +L   +LS+ + +  + S + + + L  L+  N      I  
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL 390

Query: 159 TLARLTNLKYLDLKVTSMKNLTWLDISN--------NKIEGSIPGELTELSRPDCLSLSA 210
            +  L  L Y    +     L  +D           +K          E +    L L+ 
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 211 NKLSGPVPFSNKQLSTMYIVRLSPNK 236
             L+        QL  +  + LS N+
Sbjct: 451 KDLTVLCHLE--QLLLVTHLDLSHNR 474

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.5 bits (167), Expect = 5e-13
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 28/167 (16%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
            LS L  +  P +  L I         S+P   +    L+ LD   NRLS T+P    +L
Sbjct: 70  NLSSLPDNLPPQITVLEI--TQNALI-SLPELPA---SLEYLDACDNRLS-TLPELPASL 122

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS----MKNLTWLDISNNKIEGS 192
           +   HLD+ NN LT  +P        L+Y++    ++T       +L  L + NN++   
Sbjct: 123 K---HLDVDNNQLTM-LPELP---ALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT-F 174

Query: 193 IPGELTELSRPDCLSLSANKLSG--PVPFSNKQLSTMYIV-RLSPNK 236
           +P     L     L +S N L     VP  N       I  R   N+
Sbjct: 175 LPELPESLEA---LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 16/115 (13%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
              S      K  L   + N     +   +  +     L L   NL+  +P  L     +
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNL--PPQI 82

Query: 167 KYLDL---KVTS----MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
             L++    + S      +L +LD  +N++  ++P     L     L +  N+L+
Sbjct: 83  TVLEITQNALISLPELPASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.5 bits (162), Expect = 3e-12
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 113 SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK 172
              + L++L +  N+L+  +P    +L     LD+  N L   +P+   R  + +     
Sbjct: 157 ELPTSLEVLSVRNNQLT-FLPELPESLE---ALDVSTNLLES-LPAVPVRNHHSEET--- 208

Query: 173 VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLS 225
                   +     N+I   IP  +  L     + L  N LS  +  S  Q +
Sbjct: 209 ------EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 18/119 (15%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGT---IPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163
           SI   I+    L   +   N +SGT     S               N     +   L  +
Sbjct: 2   SIMLPINNNFSLSQ-NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 164 TNLKYLDL---KVTSM-----KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
                L L    ++S+       +T L+I+ N +  S+P     L     L    N+LS
Sbjct: 59  NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLPELPASLEY---LDACDNRLS 113

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 5e-08
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 107 SIPSDISALSKLQ----LLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR 162
           S+P+        +          NR++  IP NI +L     + L +N L+  I  +L++
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 163 LTNLKYLDLK 172
            T        
Sbjct: 253 QTAQPDYHGP 262

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.8 bits (166), Expect = 7e-13
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 33/157 (21%)

Query: 80  QLSQLN---FSCFPNLESL-----RIQAYYYGFTGSIPSDI-SALSKLQLLDLS-LNRLS 129
            L+ +    F     L  L      I+        SIPS   + +  L  LDL  L +L 
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIE--------SIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 130 GTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS--------MK 177
             I       L NL +L+LG  N+   +P  L  L  L+ L++               + 
Sbjct: 186 -YISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 178 NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           +L  L + N+++          L+    L+L+ N LS
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.8 bits (158), Expect = 6e-12
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 27/144 (18%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
            L +L+      LE +   A    F G        L  L+ L+L +  +   +P+ +  L
Sbjct: 172 SLMRLDLGELKKLEYISEGA----FEG--------LFNLKYLNLGMCNIK-DMPN-LTPL 217

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS--------MKNLTWLDISNNK 188
             L  L++  N+     P +   L++LK L +   +V+         + +L  L++++N 
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 189 IEGSIPGE-LTELSRPDCLSLSAN 211
           +  S+P +  T L     L L  N
Sbjct: 278 LS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.1 bits (151), Expect = 6e-11
 Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 19/141 (13%)

Query: 87  SCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHL 145
           SC      +       G +  +P  I +    + L+L  N +   I ++   +L +L  L
Sbjct: 51  SCSNQFSKVVCTRR--GLS-EVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVL 104

Query: 146 DLGNNNLTGPIPSTLARLTNLKYLDL---KVTS--------MKNLTWLDISNNKIEGSIP 194
            LG N++          L +L  L+L    +T         +  L  L + NN IE    
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164

Query: 195 GELTELSRPDCLSLS-ANKLS 214
                +     L L    KL 
Sbjct: 165 YAFNRVPSLMRLDLGELKKLE 185

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.7 bits (150), Expect = 8e-11
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 109 PSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLK 167
                 L  L++L L  N +   I       L +L  L+L +N LT         L+ L+
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150

Query: 168 YLDL---KVTS--------MKNLTWLDISN-NKIEGSIPGELTELSRPDCLSLSANKLSG 215
            L L    + S        + +L  LD+    K+E    G    L     L+L    +  
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

Query: 216 PVPFSN 221
               + 
Sbjct: 211 MPNLTP 216

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 21/122 (17%)

Query: 59  SAGSIIGL-NLSWYDVDLNAQAQLSQL-NFSCFPNLESL-----RIQAYYYGFTGSIPSD 111
           S G+  GL NL + ++ +     +  + N +    LE L                 I   
Sbjct: 188 SEGAFEGLFNLKYLNLGMC---NIKDMPNLTPLVGLEELEMSGNHFP--------EIRPG 236

Query: 112 -ISALSKLQLLDLSLNRLSGTIPSN-IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
               LS L+ L +  +++S  I  N    L +LV L+L +NNL+         L  L  L
Sbjct: 237 SFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295

Query: 170 DL 171
            L
Sbjct: 296 HL 297

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 32/160 (20%)

Query: 74  DLNAQAQLSQLNFSCFPNLESLR--------IQAYYYGFTGSIPSDI-SALSKLQLLDLS 124
           DL+  AQL  ++ + F  L  L         +Q         +   +   L+ LQ L L 
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--------ELGPGLFRGLAALQYLYLQ 137

Query: 125 LNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS----- 175
            N L   +P +   +L NL HL L  N ++         L +L  L L   +V       
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 176 ---MKNLTWLDISNNKIEGSIPGE-LTELSRPDCLSLSAN 211
              +  L  L +  N +  ++P E L  L     L L+ N
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 22/124 (17%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           ++P  I A    Q + L  NR+S    ++    RNL  L L +N L     +    L  L
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 167 KYLDL----KVTS--------MKNLTWLDISNNKIEGSIPGE----LTELSRPDCLSLSA 210
           + LDL    ++ S        +  L  L +    ++  +       L  L     L L  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY---LYLQD 138

Query: 211 NKLS 214
           N L 
Sbjct: 139 NALQ 142

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 9e-13
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNI-GN 138
             + +       ++SL +   +   T     D+ A + LQ+L L  +R++ TI  +   +
Sbjct: 16  SFTSIPSGLTAAMKSLDLS--FNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYS 72

Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK------------VTSMKNLTWLDISN 186
           L +L HLDL +N+L+    S    L++LKYL+L               ++ NL  L I N
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 187 NKIEGSIP-GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
            +    I   +   L+  + L + A  L      S K +  ++ + L  ++
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 23/180 (12%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLS 124
           + +    +            +S    ++ + +          +P      L  L+ LDLS
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV--ENSKVF-LVPCSFSQHLKSLEFLDLS 342

Query: 125 LNRLSGTIPSN---IGNLRNLVHLDLGNNNLT--GPIPSTLARLTNLKYLDL-------- 171
            N +      N    G   +L  L L  N+L         L  L NL  LD+        
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402

Query: 172 --KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI 229
                  + + +L++S+  I          L     L +S N L         +L  +YI
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV---LDVSNNNLDS-FSLFLPRLQELYI 458

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 25/183 (13%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCF---PNLESLRIQAYYYGFTGSIPSDISALSKLQLLD 122
           L+LS      N   +    N +C    P+L++L +   +          +  L  L  LD
Sbjct: 339 LDLSE-----NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 123 LSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-------VTS 175
           +S N     +P +      +  L+L +  +   + + +     L+ LD+           
Sbjct: 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSLF 449

Query: 176 MKNLTWLDISNNKIEGSIPGE--LTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLS 233
           +  L  L IS NK++ ++P       L     + +S N+L         +L+++  + L 
Sbjct: 450 LPRLQELYISRNKLK-TLPDASLFPVLLV---MKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 234 PNK 236
            N 
Sbjct: 506 TNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 4/151 (2%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHL 145
           F    NL++LRI      F+     D + L+ L  L++    L      ++ ++R++ HL
Sbjct: 119 FPNLTNLQTLRI-GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 146 DLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDC 205
            L  +     +      L++++YL+L+ T++    +  +  +++   +  +         
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM--KKLAFRGSVL 235

Query: 206 LSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
              S N+L   + +   +LS +     + N 
Sbjct: 236 TDESFNELLKLLRYIL-ELSEVEFDDCTLNG 265

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 35/186 (18%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126
            + + D  LN     +         L  +                      ++ L +   
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVE------------------TVTIRRLHIPQF 296

Query: 127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL--------------K 172
            L   + +    L  +  + + N+ +     S    L +L++LDL               
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 173 VTSMKNLTWLDISNNKIE--GSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIV 230
             +  +L  L +S N +         L  L     L +S N    P+P S +    M  +
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415

Query: 231 RLSPNK 236
            LS   
Sbjct: 416 NLSSTG 421

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 22/170 (12%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126
           + +      +        +           +    +     +   I  LS+++  D +LN
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 127 RLSGTIPSNIGNLR--------NLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS 175
            L    PS    +          +  L +    L   + +  + L  +K + +   KV  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 176 --------MKNLTWLDISNNKIEGSIPGELTELSRPDCL---SLSANKLS 214
                   +K+L +LD+S N +                L    LS N L 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 16/170 (9%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNI-G 137
           +LS L    F  L  LR+         ++P+ I   L  L+ L ++ N+L   +P  +  
Sbjct: 48  KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFD 106

Query: 138 NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTSM--------KNLTWLDISN 186
            L NL  L L  N L    P     LT L YL L   ++ S+         +L  L + N
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166

Query: 187 NKIEGSIP-GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
           N+++  +P G   +L+    L L  N+L      +   L  + +++L  N
Sbjct: 167 NQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 23/124 (18%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
           +IPS+I A    + LDL  N+LS ++PS     L  L  L L +N L          L N
Sbjct: 30  AIPSNIPA--DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86

Query: 166 LKYLDL---KVTS--------MKNLTWLDISNNKIEGSIPG----ELTELSRPDCLSLSA 210
           L+ L +   K+ +        + NL  L +  N+++ S+P      LT+L+    LSL  
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY---LSLGY 142

Query: 211 NKLS 214
           N+L 
Sbjct: 143 NELQ 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
           + ++ LS LQ+L L LN+++    S +  L NL +L +GN  ++   P  LA L+ L  L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 170 DL---------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
                       + S+ NL  + + NN+I   +   L   S    ++L+   ++    F 
Sbjct: 179 KADDNKISDISPLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQPVFY 236

Query: 221 NKQLSTMYIVR 231
           N  L    +V+
Sbjct: 237 NNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 13/122 (10%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
           S ++ L+ LQ L +   ++S    + + NL  L  L   +N ++    S LA L NL  +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEV 200

Query: 170 DLK---------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
            LK         + +  NL  + ++N  I          L  P+ +   +     P   S
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

Query: 221 NK 222
           + 
Sbjct: 261 DN 262

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 19/137 (13%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
               AL+    +    + ++ T+     +L  +  L      +T      +  L NL  L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGL 68

Query: 170 DLK---------VTSMKNLTWLDISNNKIEG-SIPGELTELSRPDCLSLSANKLSGPVPF 219
           +LK         + ++  +T L++S N ++  S    L  +     L L++ +++   P 
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKT---LDLTSTQITDVTPL 125

Query: 220 SNKQLSTMYIVRLSPNK 236
           +   LS + ++ L  N+
Sbjct: 126 AG--LSNLQVLYLDLNQ 140

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           ++P +IS      LLDL  N +S     +   L++L  L L NN ++       + L  L
Sbjct: 47  AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 167 KYLDL---KVTSM-----KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           + L +    +  +      +L  L I +N+I     G  + L   +C+ +  N L 
Sbjct: 105 QKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 41/183 (22%)

Query: 55  ITCNSAGSIIGL-NLSWYDVDLNAQAQLSQLNFSCFPNLESL--------RIQAYYYGFT 105
           I+        GL +L    +  N   ++S+++   F  L  L         +        
Sbjct: 66  ISELRKDDFKGLQHLYALVLVNN---KISKIHEKAFSPLRKLQKLYISKNHLV------- 115

Query: 106 GSIPSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLT-GPIPSTLARL 163
             IP +    S L  L +  NR+   +P  +   LRN+  +++G N L            
Sbjct: 116 -EIPPN--LPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 164 TNLKYLDL---KVTSM-----KNLTWLDISNNKIEGSIPGE----LTELSRPDCLSLSAN 211
             L YL +   K+T +     + L  L + +NKI+ +I  E     ++L R   L L  N
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYR---LGLGHN 227

Query: 212 KLS 214
           ++ 
Sbjct: 228 QIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 26/143 (18%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSL 125
            L+   +D N    +   +   +  L  L +    +     I +   S L  L+ L L  
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLG---HNQIRMIENGSLSFLPTLRELHLDN 250

Query: 126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPST-------LARLTNLKYLDL---KVTS 175
           N+LS  +P+ + +L+ L  + L  NN+T  +            +      + L    V  
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 176 ----------MKNLTWLDISNNK 188
                     + +   +   N K
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNYK 331

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 22/123 (17%)

Query: 109 PSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLK 167
                +  +LQ+LDLS   +  TI      +L +L  L L  N +        + L++L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 168 YLDL---KVTS--------MKNLTWLDISNNKIEGSIPGE-----LTELSRPDCLSLSAN 211
            L      + S        +K L  L++++N I+ S         LT L     L LS+N
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEH---LDLSSN 159

Query: 212 KLS 214
           K+ 
Sbjct: 160 KIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 23/124 (18%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
            IP ++      + LDLS N L   + S    +   L  LDL    +          L++
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 166 LKYLDL---KVTS--------MKNLTWLDISNNKIEGSIP----GELTELSRPDCLSLSA 210
           L  L L    + S        + +L  L      +  S+     G L  L     L+++ 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKE---LNVAH 133

Query: 211 NKLS 214
           N + 
Sbjct: 134 NLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSN--I 136
            +  L    F  L SL+          S+ +     L  L+ L+++ N +  +       
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF 145

Query: 137 GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN--------------LTWL 182
            NL NL HLDL +N +     + L  L  +  L+L +    N              L  L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205

Query: 183 DISNNKIEGSIPGELTELSRPDCLSLSAN 211
            +  N+++    G    L+    + L  N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 6e-12
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
           + +  L +L+ L L  N++  T  + +  L  L  L L +N ++      LA LT L+ L
Sbjct: 125 NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL 180

Query: 170 DLK---------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
            L          +  +KNL  L++ + +         + L  P+ +  +   L  P   S
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 221 NKQ 223
           +  
Sbjct: 241 DDG 243

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 1e-10
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 15/114 (13%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
               A ++    +L    ++  +      L ++  +   N+++       +  L N+  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKL 70

Query: 170 DL---KVTSM------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
            L   K+T +      KNL WL +  NKI+  +   L +L +   LSL  N +S
Sbjct: 71  FLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 11/177 (6%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
             ++ L+KLQ L LS N +  +    +  L+NL  L+L +        +  + L     +
Sbjct: 169 VPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 170 DLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP--FSNKQLSTM 227
                S+     +    +  + ++   L E +             G     F  +    +
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

Query: 228 YIVRLSPNKGLGSNFIIVLACLLAVKRKYKKPILKANATNRIDVFSIWNYDRSIVYE 284
             V        G+     +           +       T +  VF  W  +++  +E
Sbjct: 287 KEVYTVSYDVDGTVIKTKVE-------AGTRITAPKPPTKQGYVFKGWYTEKNGGHE 336

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 6e-12
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNI-GNLRNLV 143
           F    NL  L I    +  T    + I + LS L++L ++ N        +I   LRNL 
Sbjct: 122 FLSLRNLIYLDIS---HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 144 HLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS--------MKNLTWLDISNNKIEGS 192
            LDL    L    P+    L++L+ L++      S        + +L  LD S N I  +
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-T 237

Query: 193 IPGEL 197
              + 
Sbjct: 238 SKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 17/122 (13%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT--GPIPSTLARLT 164
           S+P+ I   S    L+L  N+L          L  L  L L +N L+  G    +    T
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 165 NLKYLDL---KVTSM-------KNLTWLDISNNKIEGSIP--GELTELSRPDCLSLSANK 212
           +LKYLDL    V +M       + L  LD  ++ ++  +        L     L +S   
Sbjct: 79  SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTH 137

Query: 213 LS 214
             
Sbjct: 138 TR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL--------- 171
           +  +   L+ ++P+ I    +   L+L +N L         +LT L  L L         
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 172 ----KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
                     +L +LD+S N +  ++      L + + L    + L 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 16/130 (12%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
             I  L  +  L L+ N+L+      + NL+NL  L L  N +     S+L  L  LK L
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSL 117

Query: 170 DLK---------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
            L+         +  +  L  L + NNKI   I   L+ L++ D LSL  N++S  VP +
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLA 175

Query: 221 N-KQLSTMYI 229
              +L  +Y+
Sbjct: 176 GLTKLQNLYL 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
           + +  L +L+ L L  N++  T  + +  L  L  L L +N ++  +P  LA LT L+ L
Sbjct: 128 NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 170 DLK---------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
            L          +  +KNL  L++ + +         + L  P+ +  +   L  P   S
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

Query: 221 N 221
           +
Sbjct: 244 D 244

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
               A ++    +L    ++  +      L ++  +   N+++       +  L N+  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKL 73

Query: 170 DL---KVTSM------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
            L   K+T +      KNL WL +  NK++  +   L +L +   LSL  N +S      
Sbjct: 74  FLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDINGLV 131

Query: 221 N-KQLSTMYI 229
           +  QL ++Y+
Sbjct: 132 HLPQLESLYL 141

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT---NL 166
             ++ L+KLQ L LS N +S      +  L+NL  L+L +        +  + L     +
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 167 KYLDLKVTSMKNLTWL-DISNNKIEGSIPGELTELS 201
           K  D  + + + ++   D     ++  +P    E+S
Sbjct: 230 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 265

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 27/143 (18%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
            IP  I        L L+ N  +    + I   L  L  ++  NN +T          + 
Sbjct: 25  KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 166 LKYLDL---KVTS--------MKNLTWLDISNNKIEGSIPGE----LTELSRPDCLSLSA 210
           +  + L   ++ +        +++L  L + +N+I   +  +    L+ +     LSL  
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRL---LSLYD 138

Query: 211 NKLSGPVP---FSN-KQLSTMYI 229
           N+++  V    F     LST+ +
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNL 160

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 17/130 (13%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
                L+     +L    +  T   +   L  + + +  N+N+     + +   TNLK L
Sbjct: 13  FPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68

Query: 170 DL---------KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
            L          +  +  L  L ++ N+++         LSR   L L  N+L       
Sbjct: 69  HLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSR---LFLDNNELRDTDSLI 125

Query: 221 N-KQLSTMYI 229
           + K L  + I
Sbjct: 126 HLKNLEILSI 135

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
            +++ +    L  L L+        ++ +L+NL  L + NN L       L  L+ L+ L
Sbjct: 98  KNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVL 155

Query: 170 DLK---------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
           DL          +T +K + W+D++  K          EL   + +     +   P   S
Sbjct: 156 DLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

Query: 221 N 221
           N
Sbjct: 216 N 216

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 21/168 (12%)

Query: 90  PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN 149
            N  S    A+    T +I      L+ L  LD   + ++    + I  L  L  L   +
Sbjct: 18  DNFASEVAAAFEMQATDTI--SEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTS 73

Query: 150 NNLTGPIPSTLARLTNLKYLDLK--------VTSMKNLTWLDISNNKIEGSIPGELTELS 201
           NN+T  +   L++ TNL YL           VT +  LT+L+   NK+      +   L+
Sbjct: 74  NNITT-LD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLT 130

Query: 202 RPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACL 249
               L+ + N L+          + +  +    NK +    +     L
Sbjct: 131 Y---LNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQTQL 172

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 22/166 (13%)

Query: 64  IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDL 123
           +  N    ++D +   ++++L+ +    L +L        F      D+S    L  L+ 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS-----FNKITELDVSQNKLLNRLNC 198

Query: 124 SLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL--------KVTS 175
             N ++  +   +     L  LD  +N LT  I   +  LT L Y D          V++
Sbjct: 199 DTNNIT-KLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST 252

Query: 176 MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN 221
           +  LT L      +        T+L           +    +  ++
Sbjct: 253 LSKLTTLHCIQTDLLEIDLTHNTQLIY---FQAEGCRKIKELDVTH 295

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 19/145 (13%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139
            L +++ +    L          G       D++  ++L LLD     ++  +   +   
Sbjct: 265 DLLEIDLTHNTQLIYF----QAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQN 317

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---------KVTSMKNLTWLDISNNKIE 190
             LV+L L N  LT  +   ++  T LK L            V  +  L     +  +  
Sbjct: 318 PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTI 374

Query: 191 GSIPGELTELSRPDCLSLSANKLSG 215
                 LT  S    +S       G
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 28/173 (16%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPS-DISALSKLQLLDLSL 125
            L++ + D N   +L++L+ S  P L  L           ++   D+S  ++L  LD  L
Sbjct: 107 KLTYLNCDTN---KLTKLDVSQNPLLTYLNCA------RNTLTEIDVSHNTQLTELDCHL 157

Query: 126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK--------VTSMK 177
           N+       ++     L  LD   N +T      +++   L  L+          +    
Sbjct: 158 NKK--ITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKLDLNQNI 212

Query: 178 NLTWLDISNNKIEGSIP-GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI 229
            LT+LD S+NK+   I    LT+L+       S N L+     +  +L+T++ 
Sbjct: 213 QLTFLDCSSNKLT-EIDVTPLTQLTY---FDCSVNPLTELDVSTLSKLTTLHC 261

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPS-DISALSKLQLLDLSLNRLSGTIPSNIGN 138
            ++ L+ S   NL  L   +        + + D++ L+KL  L+   N+L+     ++  
Sbjct: 75  NITTLDLSQNTNLTYLACDS------NKLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQ 125

Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK------VTSMKNLTWLDISNNKIEGS 192
              L +L+   N LT    S   +LT L     K      VT    LT LD S NKI   
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185

Query: 193 IPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI 229
              +   L+R   L+   N ++      N QL+ +  
Sbjct: 186 DVSQNKLLNR---LNCDTNNITKLDLNQNIQLTFLDC 219

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 23/156 (14%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126
            L+++D  +N    L++L+ S    L +L           +   +I      QL+     
Sbjct: 234 QLTYFDCSVN---PLTELDVSTLSKLTTLHCI-------QTDLLEIDLTHNTQLIYFQAE 283

Query: 127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLD--------LKVTSMKN 178
                   ++ +   L  LD     +T  +   L++   L YL         L V+    
Sbjct: 284 GCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTELDVSHNTK 340

Query: 179 LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
           L  L   N  I+      + ++   +    +  +  
Sbjct: 341 LKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPS-DISALSKLQLLDLSLNRLSGTIPSNIGN 138
           ++++L+ S    L  L         T +I   D++   +L  LD S N+L+  I   +  
Sbjct: 181 KITELDVSQNKLLNRLNCD------TNNITKLDLNQNIQLTFLDCSSNKLT-EID--VTP 231

Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNL-----KYLDLKVTSMKNLTWLDISNNKIEGSI 193
           L  L + D   N LT    STL++LT L       L++ +T    L +      +    +
Sbjct: 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL 291

Query: 194 P-GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI 229
                T+L     L   A  ++      N +L  +Y+
Sbjct: 292 DVTHNTQLYL---LDCQAAGITELDLSQNPKLVYLYL 325

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 21/138 (15%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
            +P D+    + + L LS N +S     +I  L  L  L L +N +            +L
Sbjct: 45  HVPKDLPP--RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102

Query: 167 KYLDL---KVTSM-----KNLTWLDISNNKIEGSIP-----GELTELSRPDCLSLSANKL 213
           +YLD+   ++ ++      +L  LD+S N  +  +P     G LT+L+    L LSA K 
Sbjct: 103 EYLDVSHNRLQNISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTF---LGLSAAKF 158

Query: 214 SG--PVPFSNKQLSTMYI 229
                +P ++  LS + +
Sbjct: 159 RQLDLLPVAHLHLSCILL 176

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.7 bits (142), Expect = 9e-10
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 17/161 (10%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL 125
             ++   + ++    +  +      +   L        FT S+    S L +LQ L L  
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF--TQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 126 NRLSGTIPSNIGNLRNLVHLDLGNNNLT----GPIPSTLARLTNLKYLDLKVTSM----- 176
           N L           +N+  L+  + +L          T A   ++  L+L    +     
Sbjct: 387 NGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 177 ----KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213
                 +  LD+ NN+I  SIP ++T L     L++++N+L
Sbjct: 446 RCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 16/165 (9%)

Query: 68  LSWYDVDLNAQAQLSQLNFSCFPNLESLRI-QAYYYGFTGSIPSDISALSKLQLLDLSLN 126
           L+ Y++ +  +    +  +S    L+SL I       F  S  +  S  +++ +  LS++
Sbjct: 281 LNIYNLTITERIDREEFTYS-ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-------------KV 173
                      +  +   L+   N  T  +    + L  L+ L L               
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399

Query: 174 TSMKNLTWLDISNNKIEGSIPGELTELSRP-DCLSLSANKLSGPV 217
            +M +L  LD+S N +           +     L+LS+N L+G V
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI--SALSKLQLLDLS 124
            L    +  N      ++      N+ SL           S   D   +    + +L+LS
Sbjct: 378 RLQTLILQRNGLKNFFKV-ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 125 LNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV----------- 173
            N L+G++   +     +  LDL NN +   IP  +  L  L+ L++             
Sbjct: 437 SNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVF 493

Query: 174 TSMKNLTWLDISNN 187
             + +L ++ + +N
Sbjct: 494 DRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 24/188 (12%), Positives = 58/188 (30%), Gaps = 17/188 (9%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQA---YYYGFTGSIPSDISALSKLQLLD 122
           LN++   ++   +  +    F     +E L I                  +AL  L +  
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

Query: 123 LSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL----------- 171
           +       +  +       +    L  ++            ++  +L+            
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 172 KVTSMKNLTWLDISNNKIE--GSIPGELTELSRPDCLSLSANKL-SGPVPFSNKQLSTMY 228
             +++K L  L +  N ++    +      +S  + L +S N L S     +     ++ 
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 229 IVRLSPNK 236
           ++ LS N 
Sbjct: 432 VLNLSSNM 439

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 24/102 (23%)

Query: 57  CNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFP-NLESL-----RIQAYYYGFTGSIPS 110
           C  A SI+ LNLS           L+   F C P  ++ L     RI         SIP 
Sbjct: 424 CAWAESILVLNLS--------SNMLTGSVFRCLPPKVKVLDLHNNRIM--------SIPK 467

Query: 111 DISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNN 151
           D++ L  LQ L+++ N+L  ++P  +   L +L ++ L +N 
Sbjct: 468 DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 16/158 (10%)

Query: 76  NAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSN 135
           +A     +         E + +          + + +S L   + L LS N +   I S+
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SS 65

Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISN 186
           +  + NL  L LG N +   I +  A    L+ L +          +  + NL  L +SN
Sbjct: 66  LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN 124

Query: 187 NKIE--GSIPGELTELSRPDCLSLSANKLSGPVPFSNK 222
           NKI   G I  +L  L + + L L+ N L      +N 
Sbjct: 125 NKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNA 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 14/118 (11%)

Query: 107 SIPSDI-SALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLT 164
            IP    S   KL+ +DLS N++S  +  +    LR+L  L L  N +T    S    L 
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104

Query: 165 NLKYLDL---KVTS--------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSAN 211
           +L+ L L   K+          + NL  L + +NK++    G  + L     + L+ N
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 21/99 (21%)

Query: 131 TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---KVTS--------MKNL 179
            IP+N+     +  + L  N +    P   +    L+ +DL   +++         +++L
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 180 TWLDISNNKIEGSIPGE----LTELSRPDCLSLSANKLS 214
             L +  NKI   +P      L  L     L L+ANK++
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQL---LLLNANKIN 117

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 31/150 (20%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS-TLARLTN 165
            +P+ +        +DLSLN ++    ++   L++L  L +        I + T   L++
Sbjct: 27  ELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 166 LKYLDL---KVTS--------MKNLTWLDISNNKIEGS-IPGE----LTELSRPDCLSLS 209
           L  L L   +           + NL  L ++   ++G+ + G     LT L     L L 
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM---LVLR 137

Query: 210 ANKLSGPVP---FSNKQLSTMYIVRLSPNK 236
            N +    P   F N  +   +++ L+ NK
Sbjct: 138 DNNIKKIQPASFFLN--MRRFHVLDLTFNK 165

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 21/115 (18%)

Query: 116 SKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL--- 171
           S ++  DLS +++   +  ++  +  +L  L L  N +     +    LT+L  L+L   
Sbjct: 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 172 KVTS--------MKNLTWLDISNNKIEGSIPGE----LTELSRPDCLSLSANKLS 214
            + S        +  L  LD+S N I  ++  +    L  L     L+L  N+L 
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKE---LALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 27/120 (22%)

Query: 86  FSCFPNLESL-----RIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNI-GN 138
           FS F +LE L      I          I  +    L+ L  L+LS N L  +I S +  N
Sbjct: 295 FSHFTDLEQLTLAQNEIN--------KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFEN 345

Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV-----------TSMKNLTWLDISNN 187
           L  L  LDL  N++      +   L NLK L L               + +L  + +  N
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 11/141 (7%)

Query: 80  QLSQLN---FSCFPNLESLRIQAYYYGFTGS-IPSDI-SALSKLQLLDLSLNRLSGTIPS 134
           Q  QL    F+   NLE L +        G+ +  +    L+ L++L L  N +    P+
Sbjct: 90  QFLQLETGAFNGLANLEVLTL--TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 135 NI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSI 193
           +   N+R    LDL  N +       L       +  L+   + ++T  D++   +    
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR---LSSITLQDMNEYWLGWEK 204

Query: 194 PGELTELSRPDCLSLSANKLS 214
            G   + +    L LS N   
Sbjct: 205 CGNPFKNTSITTLDLSGNGFK 225

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 32/129 (24%)

Query: 115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLD---- 170
           LS + L D++   L      N     ++  LDL  N     +            +     
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 171 ----------------------LKVTSMKNLTWLDISNNKI---EGSIPGELTELSRPDC 205
                                  K      +   D+S +KI     S+    T+L +   
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ--- 303

Query: 206 LSLSANKLS 214
           L+L+ N+++
Sbjct: 304 LTLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 34/130 (26%)

Query: 115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHL-------------DLGNNNLTGPIPSTLA 161
            + +  LDLS N    ++     +      +               G+ N   P   T  
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 162 RL--TNLKYLDL---KVTS--------MKNLTWLDISNNKIEGSIPGE----LTELSRPD 204
            L  + +K  DL   K+ +          +L  L ++ N+I   I       LT L +  
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK-- 327

Query: 205 CLSLSANKLS 214
            L+LS N L 
Sbjct: 328 -LNLSQNFLG 336

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 17/116 (14%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           SIPS ++    ++ LDLS NR++    S++    NL  L L +N +      + + L +L
Sbjct: 45  SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102

Query: 167 KYLDLKV-----------TSMKNLTWLDISNNKI----EGSIPGELTELSRPDCLS 207
           ++LDL               + +LT+L++  N      E S+   LT+L      +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 14/136 (10%)

Query: 80  QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI--SALSKLQLLDLSLNRLSGTIPSNI- 136
            LS L+ S F  L SL           ++      S L+KLQ+L +        I     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 137 GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV-----------TSMKNLTWLDIS 185
             L  L  L++  ++L    P +L  + N+ +L L +               ++  L++ 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 186 NNKIEGSIPGELTELS 201
           +  ++     EL+   
Sbjct: 231 DTDLDTFHFSELSTGE 246

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL 125
           L L   D+D    ++LS    +      + R           +   ++ +S L  L+ S 
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

Query: 126 NRLSGTIPSNI-GNLRNLVHLDLGNNNLT 153
           N+L  ++P  I   L +L  + L  N   
Sbjct: 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 55  ITCNSAGSIIGL-NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQ--AYYYGFTGSIPSD 111
           +      S+  + N+S   + +     L ++      ++E L ++           + + 
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 112 ISA----LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLK 167
            +         + + ++   L   +   +  +  L+ L+   N L         RLT+L+
Sbjct: 246 ETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

Query: 168 YLDL 171
            + L
Sbjct: 305 KIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 15/141 (10%), Positives = 40/141 (28%), Gaps = 24/141 (17%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSL 125
            L   ++D +        +     N+  L +          +        S ++ L+L  
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILH--MKQHI-LLLEIFVDVTSSVECLELRD 231

Query: 126 NRLSGTIPSNI--------GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK----- 172
             L     S +               ++ + + +L   +   L +++ L  L+       
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 173 ------VTSMKNLTWLDISNN 187
                    + +L  + +  N
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTN 311

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 26/153 (16%)

Query: 107 SIPSDI-SALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPS-TLARL 163
           +IPS   S L  +  + +S++     + S+   NL  + H+++ N      I    L  L
Sbjct: 45  TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104

Query: 164 TNLKYLDL------------KVTSMKNLTWLDISNNKIEGSIPGE----LTELSRPDCLS 207
             LK+L +            KV S      L+I++N    SIP      L   +    L 
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT--LK 162

Query: 208 LSANKLS--GPVPFSNKQLSTMYIVRLSPNKGL 238
           L  N  +      F+  +L  +Y   L+ NK L
Sbjct: 163 LYNNGFTSVQGYAFNGTKLDAVY---LNKNKYL 192

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 22/129 (17%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSD--ISALSKLQLLDLSLNRLSGTIPSNI-GNLRN- 141
               P L+ L I  +  G     P    + +     +L+++ N    +IP N    L N 
Sbjct: 101 LKELPLLKFLGI--FNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 142 LVHLDLGNNNLTGPIPSTLARLTNLKYLDL----KVTSM---------KNLTWLDISNNK 188
            + L L NN  T  +       T L  + L     +T +            + LD+S   
Sbjct: 158 TLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 189 IEGSIPGEL 197
           +  ++P + 
Sbjct: 217 VT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV-- 173
            + +   ++   +   IPS      +   L L   +L        + L N+  + + +  
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 174 ----------TSMKNLTWLDISNNKIEGSIP-GELTELSRPDCLSLSANKLS 214
                      ++  +T ++I N +    I    L EL     L +    L 
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 54  GITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYG--FTGSIPSD 111
           G+      + +     ++ +++     ++ +  + F  L +  +    Y   FT S+   
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174

Query: 112 ISALSKLQLLDLSLNRLSGTIPSNI--GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
               +KL  + L+ N+    I  +   G       LD+   ++T      L  L  L   
Sbjct: 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

Query: 170 DL 171
           + 
Sbjct: 235 NT 236

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 2e-09
 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 15/108 (13%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSN-IGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
                +     L  L +   +    +    +  L  L +L +  + L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 166 LKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213
           L  L+L             S N +E S+  +  +      L LS N L
Sbjct: 82  LSRLNL-------------SFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 21/123 (17%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           S+PS I A +  + LDL    L+    +    L  L  L+L  N L          LT L
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 167 KYLDLKV-----------TSMKNLTWLDISNNKIEGSIPG----ELTELSRPDCLSLSAN 211
             L L               +  L  L +  N+++ S+P      LT+L     L L+ N
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE---LRLNTN 141

Query: 212 KLS 214
           +L 
Sbjct: 142 QLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 96  RIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTG 154
           ++     G      +    L+KL  L+L  N+L  T+ + +  +L  L  L L NN L  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97

Query: 155 PIPSTLARLTNLKYLDL---KVTSM--------KNLTWLDISNNKIEGSIP-GELTELSR 202
                   LT L  L L   ++ S+          L  L ++ N+++ SIP G   +L+ 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156

Query: 203 PDCLSLSANKL 213
              LSLS N+L
Sbjct: 157 LQTLSLSTNQL 167

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 114 ALSKLQLLDLSLNRLS-GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK 172
             S ++ L L  +R + G +         L  L   N  LT         + NL      
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--------SIANLP----- 61

Query: 173 VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
              +  L  L++S+N++ G +     +      L+LS NK+ 
Sbjct: 62  --KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 15/89 (16%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGP-IPSTLARLTNLKY 168
           +++  L+KL+ L+LS NR+SG +        NL HL+L  N +        L +L NLK 
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 169 LDLK--------------VTSMKNLTWLD 183
           LDL                  +  LT+LD
Sbjct: 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 14/96 (14%)

Query: 106 GSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
           G +        +L+ L      L+ +I +N+  L  L  L+L +N ++G +     +  N
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 166 LKYLDL------------KVTSMKNLTWLDISNNKI 189
           L +L+L             +  ++NL  LD+ N ++
Sbjct: 90  LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 19/137 (13%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           S+P+ I   +  Q+L L  N+++   P    +L NL  L LG+N L          LT L
Sbjct: 33  SVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 167 KYLDLKVTSMK-----------NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215
             LDL    +            +L  L +  NK+   +P  +  L+    L+L  N+L  
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149

Query: 216 PVP---FSN-KQLSTMY 228
            +P   F     L+  Y
Sbjct: 150 -IPHGAFDRLSSLTHAY 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171
           L  L+ L +  N+L+  +P  I  L +L HL L  N L         RL++L +  L
Sbjct: 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 21/122 (17%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           S+P+ I A  +   LDL  N L          L +L  L LG N L         +LT+L
Sbjct: 21  SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 167 KYLDL---KVTSM--------KNLTWLDISNNKIEGSIPG----ELTELSRPDCLSLSAN 211
            YL+L   ++ S+          L  L ++ N+++ S+P     +LT+L     L L  N
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKD---LRLYQN 134

Query: 212 KL 213
           +L
Sbjct: 135 QL 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
            +P  I     +  L L  N+ +  +P  + N ++L  +DL NN ++     + + +T L
Sbjct: 24  VLPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 167 KYLDL---KVTSM--------KNLTWLDISNNKIEGSIP 194
             L L   ++  +        K+L  L +  N I   +P
Sbjct: 81  LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVP 118

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 22/127 (17%)

Query: 107 SIPSDI-SALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGN-NNLTGPIPSTLARL 163
            I     S    L+ +++S N +   I +++  NL  L  + +   NNL    P     L
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103

Query: 164 TNLKYLDLKVT-----------SMKNLTWLDIS-NNKIEGSIPGE----LTELSRPDCLS 207
            NL+YL +  T                  LDI  N  I  +I       L+  S    L 
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESV--ILW 160

Query: 208 LSANKLS 214
           L+ N + 
Sbjct: 161 LNKNGIQ 167

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 16/133 (12%), Positives = 41/133 (30%), Gaps = 16/133 (12%)

Query: 121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV------- 173
                ++++  IPS++   RN + L      L        +   +L+ +++         
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 174 -----TSMKNLTWLDISN-NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTM 227
                +++  L  + I   N +    P     L     L +S   +              
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130

Query: 228 YIVRLSPNKGLGS 240
            ++ +  N  + +
Sbjct: 131 VLLDIQDNINIHT 143

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 36/155 (23%), Positives = 47/155 (30%), Gaps = 29/155 (18%)

Query: 86  FSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNI--GNLRNL 142
           F   PNL+ L I     G    +P        +  LLD+  N    TI  N   G     
Sbjct: 100 FQNLPNLQYLLI--SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156

Query: 143 VHLDLGNNNLTGPIPSTLARLTNLKYLDLKV------------TSMKNLTWLDISNNKIE 190
           V L L  N +   I ++    T L  L+L                      LDIS  +I 
Sbjct: 157 VILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 191 GSIPGE----LTELSRPDCLSLSANKLSGPVPFSN 221
            S+P      L +L        S   L        
Sbjct: 216 -SLPSYGLENLKKLRA-----RSTYNLKKLPTLEK 244

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 107 SIPSDI-SALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLT 164
            I +   +     +L     N L   +P+++       V LD+    +       L  L 
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

Query: 165 NLKYLDLK-------VTSMKNLTWLDISNN 187
            L+            +  +  L    ++  
Sbjct: 227 KLRARSTYNLKKLPTLEKLVALMEASLTYP 256

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 114 ALSKLQLLDLSLNRLS-GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK 172
             + ++ L L   + + G I        NL  L L N  L          ++NL  L   
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--------SVSNLPKL--- 70

Query: 173 VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
                 L  L++S N+I G +     +L     L+LS NKL 
Sbjct: 71  ----PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 15/96 (15%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGP-IPSTLARLTNLKY 168
           S++  L KL+ L+LS NR+ G +      L NL HL+L  N L        L +L  LK 
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124

Query: 169 LDLK--------------VTSMKNLTWLDISNNKIE 190
           LDL                  +  LT+LD  + + +
Sbjct: 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 18/98 (18%)

Query: 85  NFSCFPNLESL-----RIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS--GTIPSNIG 137
           N    P L+ L     RI        G +      L  L  L+LS N+L    T+   + 
Sbjct: 66  NLPKLPKLKKLELSENRI-------FGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK 117

Query: 138 NLRNLVHLDLGNN---NLTGPIPSTLARLTNLKYLDLK 172
            L  L  LDL N    NL     S    L  L YLD  
Sbjct: 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 33/201 (16%)

Query: 38  SSFWMANYSSDHCK--WIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESL 95
              +  +   +  +  WI     S        L+   +       + +      PNL+SL
Sbjct: 142 EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR---PNLKSL 198

Query: 96  RIQAYYYGFTGSIPSDISALSKLQLLDLSL---NRLSGTIPSNI------GNLRNLVHLD 146
            I +     +       S L  L+ L L +   +       +            NL  L 
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258

Query: 147 LGNNNLTGPIPSTLAR---LTNLKYLDL---------------KVTSMKNLTWLDISNNK 188
           + +      +         L  L+ +D+                V  +K+L ++++  N 
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

Query: 189 IEGSIPGELTELSRPDCLSLS 209
           +   +  EL + S P  + +S
Sbjct: 319 LSDEMKKELQK-SLPMKIDVS 338

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 29/131 (22%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
            IP DI        L L+ N L       + G L +LV L+L  N LTG  P+     ++
Sbjct: 22  EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 166 LKYLDLKVTSMKNLTWLDISNNKIEGSIPG----ELTELSRPDCLSLSANKLSGPVP--- 218
           ++ L L               NKI+  I       L +L     L+L  N++S  V    
Sbjct: 80  IQELQL-------------GENKIK-EISNKMFLGLHQLKT---LNLYDNQISC-VMPGS 121

Query: 219 FSN-KQLSTMY 228
           F +   L+++ 
Sbjct: 122 FEHLNSLTSLN 132

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL--------- 171
           + L+   +     +   N      LDL    +   I +  A L     +D          
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 172 KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214
               ++ L  L ++NN+I     G    L     L L+ N L 
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGP-IPSTLARLTNLKY 168
                L +L+ L ++ NR+          L +L  L L NN+L        LA L +L Y
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

Query: 169 LDLK--------------VTSMKNLTWLDISNNKIE 190
           L +               +  +  +  LD    K++
Sbjct: 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 113 SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL- 171
           + L +   +D S N +   +      LR L  L + NN +          L +L  L L 
Sbjct: 39  ATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96

Query: 172 -----------KVTSMKNLTWLDISNNKI 189
                       + S+K+LT+L I  N +
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRNPV 125

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 15/101 (14%)

Query: 107 SIPSDI-SALSKLQLLDLSLNRLSGTIPSNIGN-LRNLVHLDLGNNNLTGPIPSTLARLT 164
           S+P+ +   L+ L+ L L  N+L  ++P  + + L NL +L+L +N L         +LT
Sbjct: 99  SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157

Query: 165 NLKYLDL---KVTSM--------KNLTWLDISNNKIEGSIP 194
           NL  LDL   ++ S+          L  L +  N+++ S+P
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 28/124 (22%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLA---RL 163
              +    L+ +  +  + + +  ++   I  L N+ +L LG N L       ++    L
Sbjct: 33  DAVTQNE-LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-----DISALKEL 84

Query: 164 TNLKYLDLKVTS-----------MKNLTWLDISNNKI---EGSIPGELTELSRPDCLSLS 209
           TNL YL L               + NL  L +  N++      +  +LT L+    L+L+
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY---LNLA 141

Query: 210 ANKL 213
            N+L
Sbjct: 142 HNQL 145

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
           S+P+ I +      L+L  N+L          L  L  L L  N +         +LT L
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78

Query: 167 KYLDL---KVTSM--------KNLTWLDISNNKIEGSIP 194
             L L   K+ S+          L  L +  N+++ S+P
Sbjct: 79  TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVP 116

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 30/153 (19%)

Query: 91  NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGT----IPSNIGNLRNLVHLD 146
           +++SL IQ             +  L + Q++ L    L+      I S +     L  L+
Sbjct: 4   DIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 147 LGNNNLTGPIPSTLARL-----TNLKYLDLK---------------VTSMKNLTWLDISN 186
           L +N L       + +        ++ L L+               + ++  L  L +S+
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 187 NKIEGSIPGELTE-LSRPDC----LSLSANKLS 214
           N +  +    L E L  P C    L L    LS
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 38/201 (18%), Positives = 72/201 (35%), Gaps = 23/201 (11%)

Query: 28  KALLDTGWWNSSFWMAN--YSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLN 85
             LL       + W+     ++  C  +     +  S+  L+L+  ++       L +  
Sbjct: 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308

Query: 86  FSCFPNLESLRIQAYYYGFTG--SIPSDISALSKLQLLDLSLNRLSGTIPSNIG-----N 138
                 LESL +++  +         S ++    L  L +S NRL       +       
Sbjct: 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 368

Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELT 198
              L  L L + +++    S+LA           + +  +L  LD+SNN +  +   +L 
Sbjct: 369 GSVLRVLWLADCDVSDSSCSSLAAT---------LLANHSLRELDLSNNCLGDAGILQLV 419

Query: 199 E-LSRPDC----LSLSANKLS 214
           E + +P C    L L     S
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 21/161 (13%)

Query: 66  LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTG--SIPSDISALSKLQLLDL 123
           L+LS   +       L +        LE L+++           + S + A    + L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 124 SLNRLSGTIPSNIG-----NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN 178
           S N ++      +      +   L  L L +  +T           N + L   V S  +
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS---------DNCRDLCGIVASKAS 228

Query: 179 LTWLDISNNKIEGSIPGELTE-LSRPDC----LSLSANKLS 214
           L  L + +NK+      EL   L  P      L +    ++
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 24/141 (17%)

Query: 62  SIIGLNLSWYDV-DLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP-----SDISAL 115
           SI G +L    +   + ++  + L      +++ + +     G   +       +    L
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVL--LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 116 SKLQLLDLSLNRLSGTIPSNIGNL-------RNLVHLDLGNNNLTGPIPSTLARLTNLKY 168
              +  D+   R+   IP  +  L         L  + L +N         L        
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF----- 117

Query: 169 LDLKVTSMKNLTWLDISNNKI 189
               ++    L  L + NN +
Sbjct: 118 ----LSKHTPLEHLYLHNNGL 134

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 14/91 (15%)

Query: 110 SDISALSKLQLLDLSLNRLS-GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKY 168
           ++  +  ++Q +DLS + +   T+   +     L +L L    L+ PI +TLA+ +NL  
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 169 LDL----KVT---------SMKNLTWLDISN 186
           L+L      +         S   L  L++S 
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 27/127 (21%)

Query: 116 SKLQLLDLSLNRLSGTIPSNIG-----NLRNLVHLDLGNNNLTGP----IPSTLARLTNL 166
           + +  LDLS N L     + +         ++V L+L  N L GP    +      L +L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 167 KYLDLK------------------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSL 208
           + + L                     +++ +  +D +  +I  S    ++ L R      
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 209 SANKLSG 215
               L  
Sbjct: 316 DVPSLLN 322

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.94
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.89
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.25
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	97.21
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	97.2
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	97.08
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	96.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.72
4aoj_A	329	High affinity nerve growth factor receptor; transf	96.66
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	96.58
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	96.55
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	96.36
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	96.33
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	96.32
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	96.19
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	96.15
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	96.1
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	95.93
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	95.91
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	95.82
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	95.78
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	95.77
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	95.72
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	95.66
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	95.35
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	95.3
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	95.18
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	95.1
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	95.06
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	94.97
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	94.96
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	94.96
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	94.96
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	94.94
3an0_A	340	Dual specificity mitogen-activated protein kinase;	94.89
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	94.86
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	94.85
3uqc_A	286	Probable conserved transmembrane protein; structur	94.82
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	94.82
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	94.82
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	94.79
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	94.74
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	94.72
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	94.69
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	94.67
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	94.66
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	94.65
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	94.46
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	94.44
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	94.39
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	94.38
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	94.37
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	94.37
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	94.35
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	94.35
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	94.34
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	94.3
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	94.24
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	94.24
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	94.18
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	94.11
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	94.09
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	94.02
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	94.02
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	94.02
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	94.01
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	93.99
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	93.96
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	93.95
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	93.94
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	93.92
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	93.92
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	93.91
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	93.82
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	93.81
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	93.73
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	93.7
3rp9_A	458	Mitogen-activated protein kinase; structural genom	93.68
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	93.6
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	93.51
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	93.47
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	93.45
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	93.41
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	93.39
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	93.37
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	93.36
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	93.3
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	93.26
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	93.16
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	93.16
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	93.12
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	93.11
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	93.01
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	92.97
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	92.93
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	92.91
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	92.76
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	92.75
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	92.73
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	92.7
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	92.61
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	92.36
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	92.3
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	92.21
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	92.16
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	92.16
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	92.07
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	91.74
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	91.63
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	91.39
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	91.19
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	90.83
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	90.71
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	90.41
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	89.54
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	89.49
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	89.44
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	89.35
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	87.54
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	85.73
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	83.33
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	81.23

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=5.4e-29  Score=224.39  Aligned_cols=215  Identities=25%  Similarity=0.367  Sum_probs=140.3

Q ss_pred             CCCHHHHHHHHcCCC-----CCCCCCCCCCCCCCcc--ceeeEeCCC---CCeeEeeccccccCC---------------
Q 045233           21 SPIQLETKALLDTGW-----WNSSFWMANYSSDHCK--WIGITCNSA---GSIIGLNLSWYDVDL---------------   75 (325)
Q Consensus        21 ~~~~~~~~~ll~~~~-----~~~~~W~~~~~~~~C~--w~gv~c~~~---~~v~~l~l~~l~~~~---------------   75 (325)
                      .|.+.|+.||++++.     ....+|  ..+.|||.  |.||+|+..   ++++.+++++..+..               
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W--~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~   79 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTC--CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCC--CCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence            467889999986321     135678  34678998  999999864   789999988765543               


Q ss_pred             -------ccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           76 -------NAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        76 -------n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                             |.+.......+..+++|++|++  ++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~L--s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYI--THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEE--EEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEEC--cCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence                   1121111122445555555555  5555555555555555556666666665555555556666666666666


Q ss_pred             cCcCCCcCchhccCCC-CCcEEEcCcCCC----------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCC
Q 045233          149 NNNLTGPIPSTLARLT-NLKYLDLKVTSM----------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPV  217 (325)
Q Consensus       149 ~N~l~~~~p~~~~~l~-~L~~L~l~~n~l----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  217 (325)
                      +|++++.+|..+..++ +|++|++++|.+          ..|++|++++|.+++..|..+..+++|+.|++++|.+++.+
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  237 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence            6666555666666555 666666665511          12667777777777777777788888888888888888665


Q ss_pred             CCcccCCCCCcEEEccCCCCCch
Q 045233          218 PFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       218 p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      |. +..+++|+.|++++|.+.+.
T Consensus       238 ~~-~~~l~~L~~L~Ls~N~l~~~  259 (313)
T 1ogq_A          238 GK-VGLSKNLNGLDLRNNRIYGT  259 (313)
T ss_dssp             GG-CCCCTTCCEEECCSSCCEEC
T ss_pred             Cc-ccccCCCCEEECcCCcccCc
Confidence            55 67788888888888888653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=4.9e-28  Score=242.98  Aligned_cols=216  Identities=24%  Similarity=0.316  Sum_probs=174.1

Q ss_pred             hhccCCCHHHHHHHHcCCCC-----CCCCCCCCCCCCCccceeeEeCCCCCeeEeeccccccCCc---------------
Q 045233           17 AFAFSPIQLETKALLDTGWW-----NSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLN---------------   76 (325)
Q Consensus        17 ~~~~~~~~~~~~~ll~~~~~-----~~~~W~~~~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n---------------   76 (325)
                      ++++++.+.|+.||+++|..     .+++|.  .+.|||.|.||+|+ .++|+.++|+...+...               
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~~l~~W~--~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKNLLPDWS--SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTTSSTTCC--TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcccccCCC--CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence            45555678899999975422     477894  56799999999998 78999999986554332               


Q ss_pred             -------cccccCccccCCCCCCCEEEeccccCcCCCCCcc--cccCCCcCCEEecccCCCCCCCchhh-cCCcccceee
Q 045233           77 -------AQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPS--DISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLD  146 (325)
Q Consensus        77 -------~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~  146 (325)
                             .+..++ ..+..+++|++|++  ++|.+.+.+|.  .++++++|++|++++|.+.+..|..+ .++++|++|+
T Consensus        81 ~l~~~~~~~~~l~-~~~~~l~~L~~L~L--s~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  157 (768)
T 3rgz_A           81 SLFLSNSHINGSV-SGFKCSASLTSLDL--SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD  157 (768)
T ss_dssp             EEECTTSCEEECC-CCCCCCTTCCEEEC--CSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred             ccCCcCCCcCCCc-hhhccCCCCCEEEC--CCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence                   111111 24788999999999  89999988888  89999999999999999988888765 7899999999


Q ss_pred             cccCcCCCcCchh---ccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233          147 LGNNNLTGPIPST---LARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       147 Ls~N~l~~~~p~~---~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      +++|++++..|..   +.++++|++|++++|         .+++|++|++++|.+++.+|. ++.+++|++|++++|.++
T Consensus       158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~  236 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS  236 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred             CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence            9999999888876   788899999999888         567888899999888877776 888888888888888888


Q ss_pred             CCCCCcccCCCCCcEEEccCCCCCc
Q 045233          215 GPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       215 ~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      +.+|..++.+++|+.|++++|.+.+
T Consensus       237 ~~~~~~l~~l~~L~~L~Ls~n~l~~  261 (768)
T 3rgz_A          237 GDFSRAISTCTELKLLNISSNQFVG  261 (768)
T ss_dssp             SCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred             CcccHHHhcCCCCCEEECCCCcccC
Confidence            8888888888888888888887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=3.1e-26  Score=225.29  Aligned_cols=206  Identities=18%  Similarity=0.322  Sum_probs=162.6

Q ss_pred             CCCHHHHHHHHc-------CCCCC-------CCCCCCCCCCCCccc---eeeEeCCCCCeeEeeccccccCCccccccCc
Q 045233           21 SPIQLETKALLD-------TGWWN-------SSFWMANYSSDHCKW---IGITCNSAGSIIGLNLSWYDVDLNAQAQLSQ   83 (325)
Q Consensus        21 ~~~~~~~~~ll~-------~~~~~-------~~~W~~~~~~~~C~w---~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~   83 (325)
                      ++...|+.||.+       ..|..       ..+|  +.+.|+|.|   .||+|+..++|+.++|+...+.+.    ++ 
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W--~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~----lp-   98 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW--NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGR----VP-   98 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCC--CCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEE----EC-
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCC--CCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCc----CC-
Confidence            335578888886       23443       3378  456899999   999999889999999986555432    22 


Q ss_pred             cccCCCCCCCEEEeccccC-------------------------------------------------------------
Q 045233           84 LNFSCFPNLESLRIQAYYY-------------------------------------------------------------  102 (325)
Q Consensus        84 ~~~~~l~~L~~L~l~~~~n-------------------------------------------------------------  102 (325)
                      ..++.+++|++|++  ++|                                                             
T Consensus        99 ~~l~~L~~L~~L~L--s~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~  176 (636)
T 4eco_A           99 DAIGQLTELEVLAL--GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK  176 (636)
T ss_dssp             GGGGGCTTCCEEES--CCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred             hHHhcCccceEEEC--cCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence            35788899999999  555                                                             


Q ss_pred             -----------------cCCCCCcccccCCCcCCEEecccCCCCCC-----------------Cchhhc--CCcccceee
Q 045233          103 -----------------GFTGSIPSDISALSKLQLLDLSLNRLSGT-----------------IPSNIG--NLRNLVHLD  146 (325)
Q Consensus       103 -----------------~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~  146 (325)
                                       .+++ +|+.++++++|++|++++|.+++.                 +|+.++  ++++|++|+
T Consensus       177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~  255 (636)
T 4eco_A          177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE  255 (636)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence                             3345 777888899999999999998875                 888888  899999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcCC-C------------------CCCcEEEccCCcCCCCCch--hhhCCCCCCE
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVTS-M------------------KNLTWLDISNNKIEGSIPG--ELTELSRPDC  205 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-l------------------~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~  205 (325)
                      +++|++.+.+|+.+.++++|++|++++|. +                  ++|++|++++|+++ .+|.  .++.+++|+.
T Consensus       256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~  334 (636)
T 4eco_A          256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM  334 (636)
T ss_dssp             EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred             ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence            99999988899889999999999998885 2                  67899999999998 7787  8888999999


Q ss_pred             EECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          206 LSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       206 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      |++++|.++|.+| .++.+++|+.|++++|.+.
T Consensus       335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             EECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred             EeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence            9999998887777 6666666666666666544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=5.3e-25  Score=193.99  Aligned_cols=172  Identities=22%  Similarity=0.236  Sum_probs=154.6

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      ++.++++.|.+..++...|..+++|++|++  ++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYL--NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSCTTCCEEEC--CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCEEECcCCCCCeeCHHHhcCCCCCCEEEC--CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            556777788888888778999999999999  899998776677889999999999999999777777899999999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP  216 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  216 (325)
                      ++|++++..|..|..+++|++|++++|           .+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            999999877788999999999999998           467899999999999987777899999999999999999987


Q ss_pred             CCCcccCCCCCcEEEccCCCCCchH
Q 045233          217 VPFSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       217 ~p~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                      .+..+..+++|+.|++++|++.|..
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CHHHhccccCCCEEEecCCCeeCCC
Confidence            7778999999999999999998764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=3.1e-25  Score=201.07  Aligned_cols=207  Identities=20%  Similarity=0.234  Sum_probs=120.8

Q ss_pred             CCHHHHHHHHcCCC-------CCCCCCC--CCCCCCCccceeeEeCC---------CCCeeEeeccccccCCccccccCc
Q 045233           22 PIQLETKALLDTGW-------WNSSFWM--ANYSSDHCKWIGITCNS---------AGSIIGLNLSWYDVDLNAQAQLSQ   83 (325)
Q Consensus        22 ~~~~~~~~ll~~~~-------~~~~~W~--~~~~~~~C~w~gv~c~~---------~~~v~~l~l~~l~~~~n~~~~l~~   83 (325)
                      +...|+.||++.+.       ....+|.  .....++|.|.|+.|+.         .++++.+++++.     .+..++.
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-----~l~~lp~   98 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-----PLPQFPD   98 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-----CCSSCCS
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-----CchhcCh
Confidence            35567788886332       2234562  12356899999999952         356777776643     3333333


Q ss_pred             cccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccC-
Q 045233           84 LNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR-  162 (325)
Q Consensus        84 ~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-  162 (325)
                       .+..+++|++|++  ++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+.. 
T Consensus        99 -~l~~l~~L~~L~L--~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~  173 (328)
T 4fcg_A           99 -QAFRLSHLQHMTI--DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST  173 (328)
T ss_dssp             -CGGGGTTCSEEEE--ESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred             -hhhhCCCCCEEEC--CCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence             2444666666666  566665 56666666666666666666666 55666666666666666666655555554433 


Q ss_pred             --------CCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCC
Q 045233          163 --------LTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQL  224 (325)
Q Consensus       163 --------l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  224 (325)
                              +++|++|++++|          .+++|++|++++|++++ +|..+..+++|+.|++++|++.+.+|..++.+
T Consensus       174 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence                    556666666555          23455555555555552 34445555555555555555555555555555


Q ss_pred             CCCcEEEccCCCCCc
Q 045233          225 STMYIVRLSPNKGLG  239 (325)
Q Consensus       225 ~~L~~L~l~~N~~~~  239 (325)
                      ++|+.|++++|++.+
T Consensus       253 ~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          253 APLKRLILKDCSNLL  267 (328)
T ss_dssp             CCCCEEECTTCTTCC
T ss_pred             CCCCEEECCCCCchh
Confidence            555555555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.2e-23  Score=183.35  Aligned_cols=181  Identities=23%  Similarity=0.238  Sum_probs=151.8

Q ss_pred             CCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC
Q 045233           48 DHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR  127 (325)
Q Consensus        48 ~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~  127 (325)
                      +||.|.|..|...  .+.++     .+.+.+..++..   -.++++.|++  ++|.+.+..+..+.++++|++|++++|.
T Consensus         3 ~Cp~~~gC~C~~~--~~~l~-----~~~~~l~~~p~~---~~~~l~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~   70 (251)
T 3m19_A            3 TCETVTGCTCNEG--KKEVD-----CQGKSLDSVPSG---IPADTEKLDL--QSTGLATLSDATFRGLTKLTWLNLDYNQ   70 (251)
T ss_dssp             -CHHHHSSEEEGG--GTEEE-----CTTCCCSSCCSC---CCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cCCCCCceEcCCC--CeEEe-----cCCCCccccCCC---CCCCCCEEEc--cCCCcCccCHhHhcCcccCCEEECCCCc
Confidence            5778888888532  12233     344555555432   2368899999  8899998888889999999999999999


Q ss_pred             CCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchh
Q 045233          128 LSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGE  196 (325)
Q Consensus       128 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~  196 (325)
                      +++..+..|..+++|++|++++|++++..+..|..+++|++|++++|           .+++|++|++++|++++..+..
T Consensus        71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  150 (251)
T 3m19_A           71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA  150 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence            99877888899999999999999999777778889999999999988           4678999999999999777778


Q ss_pred             hhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          197 LTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       197 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      +..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999999999999988888899999999999999999886

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=2.1e-24  Score=217.60  Aligned_cols=209  Identities=18%  Similarity=0.233  Sum_probs=151.4

Q ss_pred             cCCCHHHHHHHHcCCCC-CCCCCCCCC---CCCC--ccc------------eeeEeCCCCCeeEeeccccccCCcccccc
Q 045233           20 FSPIQLETKALLDTGWW-NSSFWMANY---SSDH--CKW------------IGITCNSAGSIIGLNLSWYDVDLNAQAQL   81 (325)
Q Consensus        20 ~~~~~~~~~~ll~~~~~-~~~~W~~~~---~~~~--C~w------------~gv~c~~~~~v~~l~l~~l~~~~n~~~~l   81 (325)
                      +++...|+.||++++.. ..++|....   ..++  |.|            .||.|+..++|+.++|+...+.+.    +
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~----i  339 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR----V  339 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEE----E
T ss_pred             cccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCc----C
Confidence            34466799999974321 122674221   2355  999            999999889999999986555432    2


Q ss_pred             CccccCCCCCCCEEEeccccC-----------------------------------------------------------
Q 045233           82 SQLNFSCFPNLESLRIQAYYY-----------------------------------------------------------  102 (325)
Q Consensus        82 ~~~~~~~l~~L~~L~l~~~~n-----------------------------------------------------------  102 (325)
                      + ..++.+++|+.|+++ +.|                                                           
T Consensus       340 p-~~l~~L~~L~~LdLs-s~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          340 P-DAIGQLTELKVLSFG-THSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             C-GGGGGCTTCCEEESC-CTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             c-hHHhccccceEeeec-ccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence            2 346778888888882 122                                                           


Q ss_pred             ------------------cCCCCCcccccCCCcCCEEecccCCCCC-----------------CCchhhc--CCccccee
Q 045233          103 ------------------GFTGSIPSDISALSKLQLLDLSLNRLSG-----------------TIPSNIG--NLRNLVHL  145 (325)
Q Consensus       103 ------------------~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L  145 (325)
                                        .+.+ +|..++++++|++|+|++|.+++                 .+|+.++  ++++|++|
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L  496 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV  496 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             ccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence                              2222 67778888888888888888886                 2777766  88888888


Q ss_pred             ecccCcCCCcCchhccCCCCCcEEEcCcCC-CC-------------------CCcEEEccCCcCCCCCch--hhhCCCCC
Q 045233          146 DLGNNNLTGPIPSTLARLTNLKYLDLKVTS-MK-------------------NLTWLDISNNKIEGSIPG--ELTELSRP  203 (325)
Q Consensus       146 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-l~-------------------~L~~L~Ls~n~l~~~~p~--~~~~l~~L  203 (325)
                      +|++|++.+.+|..+.++++|+.|++++|. +.                   +|++|++++|+++ .+|.  .+.++++|
T Consensus       497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L  575 (876)
T 4ecn_A          497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKL  575 (876)
T ss_dssp             EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTC
T ss_pred             ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCC
Confidence            888888888888888888888888888775 32                   6888888888888 7776  78888888


Q ss_pred             CEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          204 DCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      +.|++++|.++ .+| .++.+++|+.|++++|.+.
T Consensus       576 ~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          576 GLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             CEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS
T ss_pred             CEEECCCCCcc-cch-hhcCCCcceEEECcCCccc
Confidence            88888888887 666 6777777777777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.8e-23  Score=189.85  Aligned_cols=194  Identities=23%  Similarity=0.249  Sum_probs=136.1

Q ss_pred             CCCCCccceeeEeCCC-CCeeEe------eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCc
Q 045233           45 YSSDHCKWIGITCNSA-GSIIGL------NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSK  117 (325)
Q Consensus        45 ~~~~~C~w~gv~c~~~-~~v~~l------~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~  117 (325)
                      ...+.|.|.++ |+-. .+++.+      +++.++++.|.+..++...+.++++|++|++  ++|.+.+..|..+.++++
T Consensus        25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVL--TSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTSCCCEECTTTTTTCTT
T ss_pred             ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEEC--CCCccCccCHhhcCCCCC
Confidence            35678899887 6532 222222      4556667777777777667788888888888  777777777777778888


Q ss_pred             CCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCch--hccCCCCCcEEEcCcC---------------------
Q 045233          118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS--TLARLTNLKYLDLKVT---------------------  174 (325)
Q Consensus       118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~n---------------------  174 (325)
                      |++|++++|.+++..+..+.++++|++|++++|+++. +|.  .+..+++|++|++++|                     
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            8888888888875444457777778888888777773 443  5666777777776654                     


Q ss_pred             ---------------------------------------CCCCCcEEEccCCcCCCC-----------------------
Q 045233          175 ---------------------------------------SMKNLTWLDISNNKIEGS-----------------------  192 (325)
Q Consensus       175 ---------------------------------------~l~~L~~L~Ls~n~l~~~-----------------------  192 (325)
                                                             .+++|+.|++++|.+++.                       
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK  260 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred             CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence                                                   134555555666655542                       


Q ss_pred             --------CchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          193 --------IPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       193 --------~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                              +|+.+..+++|+.|++++|+++...+..+..+++|+.|++++|++.|...
T Consensus       261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                    24456778899999999999994433446899999999999999999765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=2.2e-23  Score=196.85  Aligned_cols=194  Identities=21%  Similarity=0.172  Sum_probs=127.4

Q ss_pred             CCCcc--ceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCC
Q 045233           47 SDHCK--WIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQ  119 (325)
Q Consensus        47 ~~~C~--w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~  119 (325)
                      .+.|.  |..+.|...+     .-..-+++.++++.|.+..+....|.++++|++|++  ++|.+.+..|..|.++++|+
T Consensus        49 ~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~  126 (452)
T 3zyi_A           49 VCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL--GRNSIRQIEVGAFNGLASLN  126 (452)
T ss_dssp             TSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECTTTTTTCTTCC
T ss_pred             CCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEEC--CCCccCCcChhhccCcccCC
Confidence            34454  5688896432     111124556677777777777777888888888888  78888877777888888888


Q ss_pred             EEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEc-------------------------CcC
Q 045233          120 LLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-------------------------KVT  174 (325)
Q Consensus       120 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l-------------------------~~n  174 (325)
                      +|+|++|.++...+..|.++++|++|+|++|+++...+..|..+++|+.|++                         ++|
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            8888888888655566777888888888888777444434444444444444                         333


Q ss_pred             ---------CCCCCcEEEccCCcCCC------------------------CCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233          175 ---------SMKNLTWLDISNNKIEG------------------------SIPGELTELSRPDCLSLSANKLSGPVPFSN  221 (325)
Q Consensus       175 ---------~l~~L~~L~Ls~n~l~~------------------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  221 (325)
                               .+++|++|++++|++++                        ..|..|.++++|+.|+|++|++++..+..+
T Consensus       207 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             cccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence                     12344444444444444                        444455556666666666666665556666


Q ss_pred             cCCCCCcEEEccCCCCCchHH
Q 045233          222 KQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       222 ~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      ..+++|+.|++++|++.|...
T Consensus       287 ~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          287 TPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TTCTTCCEEECCSSCEECSTT
T ss_pred             ccccCCCEEEccCCCcCCCCC
Confidence            777778888888888777644

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=6.8e-23  Score=192.85  Aligned_cols=193  Identities=20%  Similarity=0.183  Sum_probs=120.9

Q ss_pred             CCcc--ceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCE
Q 045233           48 DHCK--WIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQL  120 (325)
Q Consensus        48 ~~C~--w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~  120 (325)
                      +.|.  +..|.|...+     .-..-+++.++++.|.+..+....|.++++|++|++  ++|.+.+..+..|.++++|++
T Consensus        39 C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~i~~~~~~~l~~L~~  116 (440)
T 3zyj_A           39 CSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQL--SRNHIRTIEIGAFNGLANLNT  116 (440)
T ss_dssp             SEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEEC--CSSCCCEECGGGGTTCSSCCE
T ss_pred             CEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEEC--CCCcCCccChhhccCCccCCE
Confidence            4453  5688996421     111123455666677777777667777777888887  777777766677777777777


Q ss_pred             EecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEc-------------------------CcC-
Q 045233          121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-------------------------KVT-  174 (325)
Q Consensus       121 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l-------------------------~~n-  174 (325)
                      |++++|+++...+..|..+++|++|+|++|+++...+..|..+++|++|++                         ++| 
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            777777777555556777777777777777776444434444444444444                         333 


Q ss_pred             --------CCCCCcEEEccCCcCCCC------------------------CchhhhCCCCCCEEECCCCcCCCCCCCccc
Q 045233          175 --------SMKNLTWLDISNNKIEGS------------------------IPGELTELSRPDCLSLSANKLSGPVPFSNK  222 (325)
Q Consensus       175 --------~l~~L~~L~Ls~n~l~~~------------------------~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  222 (325)
                              .+++|++|++++|++++.                        .+..|.++++|+.|+|++|++++..+..+.
T Consensus       197 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence                    123444555555544444                        444455566666666666666666666667


Q ss_pred             CCCCCcEEEccCCCCCchHH
Q 045233          223 QLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       223 ~l~~L~~L~l~~N~~~~~~~  242 (325)
                      .+++|+.|++++|++.|...
T Consensus       277 ~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          277 PLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             SCTTCCEEECCSSCEECSST
T ss_pred             cccCCCEEEcCCCCccCCCC
Confidence            77778888888888776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=1.7e-22  Score=179.14  Aligned_cols=171  Identities=24%  Similarity=0.239  Sum_probs=88.3

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCCCCchhhcCCcccceee
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~  146 (325)
                      ++.++++.|.+..++...+..+++|++|++  ++|.+.+..|..+..+++|++|++++|. +....|..+..+++|++|+
T Consensus        34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           34 SQRIFLHGNRISHVPAASFRACRNLTILWL--HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             ceEEEeeCCcCCccCHHHcccCCCCCEEEC--CCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            334444455555554444555555555555  4555554444455555555555555554 4433344444555555555


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcC------------------------cC-----------CCCCCcEEEccCCcCCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLK------------------------VT-----------SMKNLTWLDISNNKIEG  191 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~------------------------~n-----------~l~~L~~L~Ls~n~l~~  191 (325)
                      +++|++++..|..+..+++|++|+++                        +|           .+++|++|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            55555544444444444455555544                        44           23455555555555555


Q ss_pred             CCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          192 SIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       192 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      ..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            5555555555555555555555544444455555666666666665554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=2.3e-22  Score=178.27  Aligned_cols=146  Identities=23%  Similarity=0.228  Sum_probs=123.6

Q ss_pred             cccccCCcc-ccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           69 SWYDVDLNA-QAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        69 ~~l~~~~n~-~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      +.++++.|. +..+....+..+++|++|++  ++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHL--DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEeCCCCCCccccCHHHhcCCcCCCEEEC--CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            344555564 55665566778888888888  888888877888888999999999999998766677889999999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP  216 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  216 (325)
                      ++|++++..+..+..+++|+.|++++|           .+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            999999666667999999999999998           467999999999999987778899999999999999999853

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=3.9e-22  Score=178.53  Aligned_cols=193  Identities=22%  Similarity=0.265  Sum_probs=100.3

Q ss_pred             CCCCccceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCC-------------
Q 045233           46 SSDHCKWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGS-------------  107 (325)
Q Consensus        46 ~~~~C~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~-------------  107 (325)
                      ..+.|.|.++.|+..+     .-..-+++.++++.|.+..++...+..+++|++|++  ++|.+...             
T Consensus         3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL--SSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCEEEEEEHHHHSCSCC
T ss_pred             CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEEC--CCCccCcccCccccccccccc
Confidence            3466899999997532     000113445555566666666555666666666666  55554421             


Q ss_pred             ------------Ccc-------------------------cccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233          108 ------------IPS-------------------------DISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus       108 ------------~p~-------------------------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                                  +|.                         .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  160 (306)
T 2z66_A           81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  160 (306)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence                        112                         2333333333333333333333333444444444444444


Q ss_pred             cCCC-cCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233          151 NLTG-PIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP  218 (325)
Q Consensus       151 ~l~~-~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  218 (325)
                      .+++ ..|..+..+++|++|++++|           .+++|++|++++|.+++..+..+..+++|+.|++++|++++..|
T Consensus       161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            4443 23444444444555554444           23455566666666655545555556666666666666665556


Q ss_pred             CcccCCC-CCcEEEccCCCCCch
Q 045233          219 FSNKQLS-TMYIVRLSPNKGLGS  240 (325)
Q Consensus       219 ~~~~~l~-~L~~L~l~~N~~~~~  240 (325)
                      ..+..++ +|+.|++++|++.|.
T Consensus       241 ~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          241 QELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             SSCCCCCTTCCEEECTTCCEECS
T ss_pred             HHHHhhhccCCEEEccCCCeecc
Confidence            5566653 666666666666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=3.9e-22  Score=200.14  Aligned_cols=166  Identities=35%  Similarity=0.487  Sum_probs=123.6

Q ss_pred             CCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC
Q 045233           74 DLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT  153 (325)
Q Consensus        74 ~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  153 (325)
                      +.|.+.......+..+++|++|++  ++|.+.+.+|..+.++++|++|++++|++++.+|..++.+++|++|++++|+++
T Consensus       450 ~~n~l~~~~p~~~~~l~~L~~L~L--~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          450 WLNMLEGEIPQELMYVKTLETLIL--DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEEC--CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             CCCcccCcCCHHHcCCCCceEEEe--cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence            334333333334556667777777  677777777777777777777777777777777777777777777777777777


Q ss_pred             CcCchhccCCCCCcEEEcCcCC----------------------------------------------------------
Q 045233          154 GPIPSTLARLTNLKYLDLKVTS----------------------------------------------------------  175 (325)
Q Consensus       154 ~~~p~~~~~l~~L~~L~l~~n~----------------------------------------------------------  175 (325)
                      +.+|..+..+++|++|++++|.                                                          
T Consensus       528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  607 (768)
T 3rgz_A          528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL  607 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred             CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence            7777777777777777777661                                                          


Q ss_pred             -----------------------CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEc
Q 045233          176 -----------------------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRL  232 (325)
Q Consensus       176 -----------------------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l  232 (325)
                                             +++|+.||+++|+++|.+|..++.++.|+.|+|++|+++|.+|..++.+++|+.|++
T Consensus       608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL  687 (768)
T 3rgz_A          608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL  687 (768)
T ss_dssp             GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence                                   235778888888888888888888888888888888888888888888888888888


Q ss_pred             cCCCCCchH
Q 045233          233 SPNKGLGSN  241 (325)
Q Consensus       233 ~~N~~~~~~  241 (325)
                      ++|++++..
T Consensus       688 s~N~l~g~i  696 (768)
T 3rgz_A          688 SSNKLDGRI  696 (768)
T ss_dssp             CSSCCEECC
T ss_pred             CCCcccCcC
Confidence            888887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.8e-21  Score=170.35  Aligned_cols=165  Identities=24%  Similarity=0.246  Sum_probs=143.7

Q ss_pred             ccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCc
Q 045233           72 DVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN  151 (325)
Q Consensus        72 ~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  151 (325)
                      +++.+.+..++  .+..+++|++|++  ++|.+.+.  +.+..+++|++|++++|.+++..+..+.++++|++|++++|+
T Consensus        47 ~l~~~~i~~~~--~l~~l~~L~~L~l--~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           47 IANNSDIKSVQ--GIQYLPNVRYLAL--GGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             ECTTSCCCCCT--TGGGCTTCCEEEC--TTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eeCCCCccccc--ccccCCCCcEEEC--CCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence            34445555444  3778999999999  88888763  478899999999999999997777778999999999999999


Q ss_pred             CCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCc
Q 045233          152 LTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS  220 (325)
Q Consensus       152 l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  220 (325)
                      +++..+..+..+++|++|++++|           .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..
T Consensus       121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (272)
T 3rfs_A          121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV  200 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence            99777777899999999999988           4578999999999999888888899999999999999999988888


Q ss_pred             ccCCCCCcEEEccCCCCCchHH
Q 045233          221 NKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       221 ~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      +..+++|+.|++++|++.|...
T Consensus       201 ~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          201 FDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTCTTCCEEECCSSCBCCCTT
T ss_pred             HhCCcCCCEEEccCCCccccCc
Confidence            9999999999999999987643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=3.9e-22  Score=180.65  Aligned_cols=171  Identities=20%  Similarity=0.282  Sum_probs=153.1

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcC--------
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN--------  138 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--------  138 (325)
                      .|+.++++.|.+..++. .+..+++|++|++  ++|.+. .+|..+.++++|++|++++|++.+.+|..+..        
T Consensus       105 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L--s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          105 HLQHMTIDAAGLMELPD-TMQQFAGLETLTL--ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             TCSEEEEESSCCCCCCS-CGGGGTTCSEEEE--ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCEEECCCCCccchhH-HHhccCCCCEEEC--CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            35556667777776653 5788999999999  889888 78999999999999999999988899987765        


Q ss_pred             -CcccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEE
Q 045233          139 -LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLS  207 (325)
Q Consensus       139 -l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  207 (325)
                       +++|++|++++|+++ .+|..+..+++|++|++++|          .+++|++|++++|++.+.+|..+..+++|+.|+
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence             999999999999999 88999999999999999998          467899999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          208 LSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       208 L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      +++|++.+.+|..+..+++|+.|++++|++.+..+
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            99999999999999999999999999999876433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=1.9e-22  Score=181.53  Aligned_cols=187  Identities=24%  Similarity=0.366  Sum_probs=164.9

Q ss_pred             ccee--eEeC-CCCCeeE------eeccccccCCccccc--cCccccCCCCCCCEEEecccc-CcCCCCCcccccCCCcC
Q 045233           51 KWIG--ITCN-SAGSIIG------LNLSWYDVDLNAQAQ--LSQLNFSCFPNLESLRIQAYY-YGFTGSIPSDISALSKL  118 (325)
Q Consensus        51 ~w~g--v~c~-~~~~v~~------l~l~~l~~~~n~~~~--l~~~~~~~l~~L~~L~l~~~~-n~~~~~~p~~l~~l~~L  118 (325)
                      .|..  -.|. ....|+.      -.+..++++.+.+..  .-...+..+++|++|++  ++ |.+.+.+|..+.++++|
T Consensus        26 ~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L--~~~n~l~~~~p~~l~~l~~L  103 (313)
T 1ogq_A           26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAKLTQL  103 (313)
T ss_dssp             TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEE--EEETTEESCCCGGGGGCTTC
T ss_pred             CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeC--CCCCcccccCChhHhcCCCC
Confidence            5743  2354 1345655      357789999999875  33346899999999999  74 89999999999999999


Q ss_pred             CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCC-----------CC-CCcEEEccC
Q 045233          119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS-----------MK-NLTWLDISN  186 (325)
Q Consensus       119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~-~L~~L~Ls~  186 (325)
                      ++|++++|.+++.+|..|.++++|++|++++|++++.+|..+..+++|++|++++|.           ++ +|++|++++
T Consensus       104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence            999999999999999999999999999999999999999999999999999999993           34 899999999


Q ss_pred             CcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       187 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      |++++.+|..+..++ |+.|++++|.+++.+|..+..+++|+.|++++|.+.+.
T Consensus       184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            999999999999997 99999999999999999999999999999999998754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=1.8e-21  Score=171.65  Aligned_cols=172  Identities=25%  Similarity=0.294  Sum_probs=98.1

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchh------------
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSN------------  135 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~------------  135 (325)
                      ++.++++.|.+..++...+.++++|++|++  ++|.+.+..+..+..+++|++|++++|.+++..+..            
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEEC--CCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            334444445444444444555555555555  445444444444455555555555555554433344            


Q ss_pred             ------------hcCCcccceeecccCcCCCc-CchhccCCCCCcEEEcCcCCCC-----------CCc----EEEccCC
Q 045233          136 ------------IGNLRNLVHLDLGNNNLTGP-IPSTLARLTNLKYLDLKVTSMK-----------NLT----WLDISNN  187 (325)
Q Consensus       136 ------------~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~n~l~-----------~L~----~L~Ls~n  187 (325)
                                  +..+++|++|++++|++++. +|..+..+++|++|++++|.+.           +|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence                        44445555555555555432 3445555555555555555221           222    4555555


Q ss_pred             cCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          188 KIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       188 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      .+++..+..+ ...+|+.|++++|++++..+..+..+++|+.|++++|++.|...
T Consensus       188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            5553333332 33478899999999997777778999999999999999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=9.2e-21  Score=162.85  Aligned_cols=163  Identities=25%  Similarity=0.223  Sum_probs=135.9

Q ss_pred             CCCCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEec
Q 045233           44 NYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDL  123 (325)
Q Consensus        44 ~~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~L  123 (325)
                      +.+.+.|.|.+|.|+..+                +..++   ..-.++|++|++  ++|.+.+..|..+..+++|++|++
T Consensus        13 ~~~~~~Cs~~~v~c~~~~----------------l~~ip---~~~~~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L   71 (229)
T 3e6j_A           13 CPSQCSCSGTTVDCRSKR----------------HASVP---AGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYL   71 (229)
T ss_dssp             CCTTCEEETTEEECTTSC----------------CSSCC---SCCCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCEEeCCEeEccCCC----------------cCccC---CCCCCCCCEEEc--CCCccCccCHHHhhCccCCcEEEC
Confidence            456789999999996531                12222   222488999999  999999998999999999999999


Q ss_pred             ccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCC
Q 045233          124 SLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRP  203 (325)
Q Consensus       124 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  203 (325)
                      ++|.++...+..|..+++|++|+|++|++++..+..|..+++|+             +|++++|+++ .+|..+..+++|
T Consensus        72 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~-------------~L~Ls~N~l~-~lp~~~~~l~~L  137 (229)
T 3e6j_A           72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK-------------ELFMCCNKLT-ELPRGIERLTHL  137 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-------------EEECCSSCCC-SCCTTGGGCTTC
T ss_pred             CCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC-------------eEeccCCccc-ccCcccccCCCC
Confidence            99999866667789999999999999999966666677666655             4566777777 678889999999


Q ss_pred             CEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchH
Q 045233          204 DCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                      +.|++++|++++..+..+..+++|+.|++++|++.|..
T Consensus       138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99999999999877788999999999999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=5e-21  Score=170.38  Aligned_cols=170  Identities=25%  Similarity=0.192  Sum_probs=150.5

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      +++.++++.|.+..+....+..+++|++|++  ++|.+.+..+  ...+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEEC--TTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEEC--CCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            4566777888888887778999999999999  8898876433  378999999999999999 7888899999999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      +++|++++..|..|..+++|++|++++|           .+++|+.|++++|+++...+..+..+++|+.|++++|+++ 
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-  185 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence            9999999777788999999999999998           4578999999999999777777889999999999999999 


Q ss_pred             CCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          216 PVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       216 ~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      .+|..+....+|+.+++++|++.|...
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccChhhcccccCCeEEeCCCCccCcCc
Confidence            678888888999999999999998753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=4.1e-21  Score=182.28  Aligned_cols=190  Identities=22%  Similarity=0.254  Sum_probs=158.2

Q ss_pred             CCCCc--cceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcC
Q 045233           46 SSDHC--KWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKL  118 (325)
Q Consensus        46 ~~~~C--~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L  118 (325)
                      ..+.|  .|..|.|...+     .-..-+++.++++.|.+..+....|..+++|++|++  ++|.+.+..|..|.++++|
T Consensus         5 ~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~i~~~~~~~~~~l~~L   82 (477)
T 2id5_A            5 PRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL--NENIVSAVEPGAFNNLFNL   82 (477)
T ss_dssp             TTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--TTSCCCEECTTTTTTCTTC
T ss_pred             CCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEEC--CCCccCEeChhhhhCCccC
Confidence            34556  46789996432     111224566778888888888888999999999999  8999998889999999999


Q ss_pred             CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCC
Q 045233          119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNN  187 (325)
Q Consensus       119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n  187 (325)
                      ++|++++|.++...+..|.++++|++|+|++|++++..|..|..+++|++|++++|           .+++|++|++++|
T Consensus        83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            99999999999666667899999999999999999888889999999999999988           4678999999999


Q ss_pred             cCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCC
Q 045233          188 KIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       188 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~  237 (325)
                      ++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+.
T Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence            99977777889999999999999998877777777777777777766543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=1.1e-20  Score=170.86  Aligned_cols=189  Identities=23%  Similarity=0.322  Sum_probs=140.3

Q ss_pred             CCCccceeeEeCCCC--Ce---eEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEE
Q 045233           47 SDHCKWIGITCNSAG--SI---IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLL  121 (325)
Q Consensus        47 ~~~C~w~gv~c~~~~--~v---~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L  121 (325)
                      .+.|.|+.+.|...+  .+   ..-+++.++++.|.+..++...+..+++|++|++  ++|.+.+..|..+..+++|++|
T Consensus        28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL--INNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC--CSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEEC--CCCcCCeeCHHHhcCCCCCCEE
Confidence            456899999997432  11   1124566777888888888778999999999999  8899988888889999999999


Q ss_pred             ecccCCCCCCCch----------------------hhcCCcccceeecccCcCCC--cCchhccCCCCCcEEEcCcCCC-
Q 045233          122 DLSLNRLSGTIPS----------------------NIGNLRNLVHLDLGNNNLTG--PIPSTLARLTNLKYLDLKVTSM-  176 (325)
Q Consensus       122 ~Ls~n~l~~~~p~----------------------~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~n~l-  176 (325)
                      ++++|.++ .+|.                      .+.++++|++|++++|.++.  ..+..+..+++|++|++++|.+ 
T Consensus       106 ~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          106 YLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             ECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             ECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            99988876 3443                      34455556666666665542  4455566666666666666632 


Q ss_pred             -------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          177 -------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       177 -------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                             ++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence                   46778888888888777788888888888888888888777777888888888888888876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=7.1e-21  Score=172.40  Aligned_cols=187  Identities=24%  Similarity=0.289  Sum_probs=144.7

Q ss_pred             CCCccceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEE
Q 045233           47 SDHCKWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLL  121 (325)
Q Consensus        47 ~~~C~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L  121 (325)
                      .+.|.|..+.|...+     ....-+++.++++.|.+..++...+.++++|++|++  ++|.+.+..|..+.++++|++|
T Consensus        30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL--VNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECGGGSTTCTTCCEE
T ss_pred             CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEEC--CCCccCccCHhHhhCcCCCCEE
Confidence            345899999996432     111124566777788888887778999999999999  8999998888899999999999


Q ss_pred             ecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC-------------------------
Q 045233          122 DLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM-------------------------  176 (325)
Q Consensus       122 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l-------------------------  176 (325)
                      ++++|.++ .+|..+.  ++|++|++++|++++..+..+..+++|+.|++++|.+                         
T Consensus       108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l  184 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL  184 (332)
T ss_dssp             ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred             ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence            99999988 5665544  6788888888888755555677788888888777633                         


Q ss_pred             --------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          177 --------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       177 --------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                              ++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus       185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          185 TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence                    35777777777777766677888888888888888888777777888888888888888776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=3.7e-21  Score=172.14  Aligned_cols=147  Identities=27%  Similarity=0.322  Sum_probs=130.6

Q ss_pred             ccccccCCccccccCc-cccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCC-CCchhhcCCccccee
Q 045233           68 LSWYDVDLNAQAQLSQ-LNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG-TIPSNIGNLRNLVHL  145 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~-~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L  145 (325)
                      |+.++++.|.+..++. ..+..+++|++|++  ++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|
T Consensus       103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI--SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             CCEEECTTSEEESSTTTTTTTTCTTCCEEEC--TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCEEECCCCcccccccchhhhhccCCCEEEC--CCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            3445666777776665 46888999999999  8999998888899999999999999999986 578889999999999


Q ss_pred             ecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCC-CCCEEECCCCcC
Q 045233          146 DLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELS-RPDCLSLSANKL  213 (325)
Q Consensus       146 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l  213 (325)
                      ++++|++++..|..+..+++|+.|++++|           .+++|++|++++|++++..|..+..++ +|+.|++++|++
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            99999999888899999999999999998           457899999999999999999999985 999999999999


Q ss_pred             CCC
Q 045233          214 SGP  216 (325)
Q Consensus       214 ~~~  216 (325)
                      ++.
T Consensus       261 ~~~  263 (306)
T 2z66_A          261 ACT  263 (306)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            854

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=2.1e-20  Score=159.64  Aligned_cols=164  Identities=23%  Similarity=0.227  Sum_probs=135.4

Q ss_pred             CCCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecc
Q 045233           45 YSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLS  124 (325)
Q Consensus        45 ~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls  124 (325)
                      +..+.|.|..+.|...                .+..++.   .-.++|+.|++  ++|.+.+..+..+..+++|++|+++
T Consensus         6 P~~C~C~~~~v~c~~~----------------~l~~iP~---~l~~~l~~L~l--~~n~i~~i~~~~~~~l~~L~~L~Ls   64 (220)
T 2v9t_B            6 PAACTCSNNIVDCRGK----------------GLTEIPT---NLPETITEIRL--EQNTIKVIPPGAFSPYKKLRRIDLS   64 (220)
T ss_dssp             CTTSEEETTEEECTTS----------------CCSSCCS---SCCTTCCEEEC--CSSCCCEECTTSSTTCTTCCEEECC
T ss_pred             CCCCEECCCEEEcCCC----------------CcCcCCC---ccCcCCCEEEC--CCCcCCCcCHhHhhCCCCCCEEECC
Confidence            3456688888888542                2223322   11368999999  8999998888889999999999999


Q ss_pred             cCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCC
Q 045233          125 LNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPD  204 (325)
Q Consensus       125 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  204 (325)
                      +|.+++..|..|.++++|++|+|++|+++...+..|..+++|             ++|+|++|++++..|..|..+++|+
T Consensus        65 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L-------------~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           65 NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL-------------QLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             SSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-------------CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC-------------CEEECCCCCCCEeCHHHcCCCCCCC
Confidence            999998889999999999999999999995545556666554             5567778888888889999999999


Q ss_pred             EEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          205 CLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      .|+|++|++++..+..+..+++|+.|++++|++.|...
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            99999999998888889999999999999999988654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=7.6e-20  Score=160.88  Aligned_cols=184  Identities=21%  Similarity=0.238  Sum_probs=157.1

Q ss_pred             CCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC
Q 045233           47 SDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN  126 (325)
Q Consensus        47 ~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n  126 (325)
                      .++|.|.|+.|+-.+..+.++++     .+.+..++.   .-.++++.|++  ++|.+.+..+..+.++++|++|++++|
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~-----~~~l~~ip~---~~~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n   71 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCS-----SKKLTAIPS---NIPADTKKLDL--QSNKLSSLPSKAFHRLTKLRLLYLNDN   71 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECT-----TSCCSSCCS---CCCTTCSEEEC--CSSCCSCCCTTSSSSCTTCCEEECCSS
T ss_pred             CccCCCCCCCCEeCCCCCEEEcc-----CCCCCccCC---CCCCCCCEEEC--cCCCCCeeCHHHhcCCCCCCEEECCCC
Confidence            47899999999765555566665     444444443   22368999999  899999887788999999999999999


Q ss_pred             CCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCch
Q 045233          127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPG  195 (325)
Q Consensus       127 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~  195 (325)
                      .++...+..|.++++|++|++++|++++..+..+..+++|++|++++|           .+++|++|++++|.+++..+.
T Consensus        72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A           72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG  151 (270)
T ss_dssp             CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence            999666666789999999999999999766778899999999999988           467899999999999977777


Q ss_pred             hhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          196 ELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      .+..+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            799999999999999999988777899999999999999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=8.8e-20  Score=154.12  Aligned_cols=162  Identities=20%  Similarity=0.204  Sum_probs=130.8

Q ss_pred             CCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEeccc
Q 045233           46 SSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL  125 (325)
Q Consensus        46 ~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~  125 (325)
                      ..+.|.|.++.|+..+-                ..+   +....++|++|++  ++|.+.+..+..+..+++|++|++++
T Consensus         3 ~~C~C~~~~v~c~~~~l----------------~~~---p~~~~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~   61 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQGR----------------TSV---PTGIPAQTTYLDL--ETNSLKSLPNGVFDELTSLTQLYLGG   61 (208)
T ss_dssp             TTCEEETTEEECCSSCC----------------SSC---CSCCCTTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CCCEECCCEEEecCCCc----------------cCC---CCCCCCCCcEEEc--CCCccCcCChhhhcccccCcEEECCC
Confidence            45678999999965321                112   2233568999999  89999887777789999999999999


Q ss_pred             CCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCE
Q 045233          126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDC  205 (325)
Q Consensus       126 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  205 (325)
                      |++++..+..|..+++|++|++++|++++..+..+..+++|+             +|++++|++++..+..+..+++|+.
T Consensus        62 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-------------~L~L~~N~l~~~~~~~~~~l~~L~~  128 (208)
T 2o6s_A           62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK-------------ELALNTNQLQSLPDGVFDKLTQLKD  128 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-------------EEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC-------------EEEcCCCcCcccCHhHhccCCcCCE
Confidence            999976666789999999999999999965555566665554             5566777888667777899999999


Q ss_pred             EECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchH
Q 045233          206 LSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       206 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                      |++++|++++..+..+..+++|+.|++++|++.|..
T Consensus       129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A          129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             EECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence            999999999877777899999999999999988754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=2.9e-20  Score=175.14  Aligned_cols=126  Identities=22%  Similarity=0.203  Sum_probs=102.7

Q ss_pred             cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEcc
Q 045233          117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDIS  185 (325)
Q Consensus       117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls  185 (325)
                      +|++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|++|++++|           .+++|++|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            3444444444444445666777888888888888888777778888888888888887           46789999999


Q ss_pred             CCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          186 NNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       186 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      +|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|...
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999998888899999999999999999997777778899999999999999988754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=2.7e-20  Score=175.05  Aligned_cols=99  Identities=26%  Similarity=0.380  Sum_probs=73.5

Q ss_pred             CCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEE
Q 045233          114 ALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWL  182 (325)
Q Consensus       114 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L  182 (325)
                      ++++|++|++++|.++ .+| .+..+++|++|+|++|++++..|..|..+++|+.|++++|           .+++|++|
T Consensus       183 ~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          183 GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred             cccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence            3444444444444444 222 2445566666777777777666777888888888888877           46789999


Q ss_pred             EccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233          183 DISNNKIEGSIPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       183 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      +|++|++++..+..+..+++|+.|+|++|++.
T Consensus       261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            99999999888888999999999999999986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=1.7e-20  Score=176.80  Aligned_cols=87  Identities=25%  Similarity=0.392  Sum_probs=50.9

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchh--hcCCcccceeecccCcCCCcCchh-ccC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSN--IGNLRNLVHLDLGNNNLTGPIPST-LAR  162 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-~~~  162 (325)
                      |.++++|++|++  ++|.+.+..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|++++..|.. +.+
T Consensus        75 ~~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  152 (455)
T 3v47_A           75 FRGLSSLIILKL--DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN  152 (455)
T ss_dssp             TTTCTTCCEEEC--TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred             ccccccCCEEeC--CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence            455555555555  555555555555666666666666666665444433  556666666666666666555544 566


Q ss_pred             CCCCcEEEcCcC
Q 045233          163 LTNLKYLDLKVT  174 (325)
Q Consensus       163 l~~L~~L~l~~n  174 (325)
                      +++|++|++++|
T Consensus       153 l~~L~~L~L~~n  164 (455)
T 3v47_A          153 MRRFHVLDLTFN  164 (455)
T ss_dssp             CTTCCEEECTTC
T ss_pred             CCcccEEeCCCC
Confidence            666666666555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=6.8e-20  Score=178.84  Aligned_cols=169  Identities=21%  Similarity=0.264  Sum_probs=119.6

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |..++++.|.+..++...|..+++|++|++  ++|.+.+..|..++.+++|++|++++|.+++..+..|.++++|++|+|
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYM--GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEEC--CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            344666677777766667888888888888  888888877777888888889999888888555555688888999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcCCC---------------------------------------------------
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVTSM---------------------------------------------------  176 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n~l---------------------------------------------------  176 (325)
                      ++|.+++..|..|..+++|++|++++|.+                                                   
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L  234 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  234 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence            99988877777888888888888887722                                                   


Q ss_pred             -------------------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCC
Q 045233          177 -------------------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       177 -------------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~  237 (325)
                                         ++|+.|++++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+
T Consensus       235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence                               234445555555555555555556666666666666553 344445566666666666666


Q ss_pred             Cc
Q 045233          238 LG  239 (325)
Q Consensus       238 ~~  239 (325)
                      ..
T Consensus       314 ~~  315 (597)
T 3oja_B          314 LH  315 (597)
T ss_dssp             CC
T ss_pred             Cc
Confidence            53

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.3e-20  Score=162.81  Aligned_cols=189  Identities=17%  Similarity=0.179  Sum_probs=152.5

Q ss_pred             CCCCccc-ee--eEeCCCCCe--eEeeccccccCCccccccCccccCCCCCCCEEEeccccCc-CCCCCcccccCCCcCC
Q 045233           46 SSDHCKW-IG--ITCNSAGSI--IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYG-FTGSIPSDISALSKLQ  119 (325)
Q Consensus        46 ~~~~C~w-~g--v~c~~~~~v--~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~-~~~~~p~~l~~l~~L~  119 (325)
                      ..+.|.. ..  |.|.....+  ..-+++.++++.|.+..++...+.++++|++|++  ++|. +.+..+..+.++++|+
T Consensus         6 ~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l--~~n~~l~~i~~~~f~~l~~L~   83 (239)
T 2xwt_C            6 PPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYV--SIDVTLQQLESHSFYNLSKVT   83 (239)
T ss_dssp             SSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEE--ECCSSCCEECTTTEESCTTCC
T ss_pred             CCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeC--CCCCCcceeCHhHcCCCcCCc
Confidence            3455644 44  558642211  1225667778888888888888999999999999  8887 7766667899999999


Q ss_pred             EEeccc-CCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCc---EEEcCcC------------CCCCCc-EE
Q 045233          120 LLDLSL-NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLK---YLDLKVT------------SMKNLT-WL  182 (325)
Q Consensus       120 ~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~l~~n------------~l~~L~-~L  182 (325)
                      +|++++ |.++...+..|.++++|++|++++|++++ +|. +..+++|+   +|++++|            .+++|+ +|
T Consensus        84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L  161 (239)
T 2xwt_C           84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL  161 (239)
T ss_dssp             EEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred             EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE
Confidence            999999 99996666789999999999999999995 776 88888888   9999987            356888 99


Q ss_pred             EccCCcCCCCCchhhhCCCCCCEEECCCCc-CCCCCCCcccCC-CCCcEEEccCCCCCc
Q 045233          183 DISNNKIEGSIPGELTELSRPDCLSLSANK-LSGPVPFSNKQL-STMYIVRLSPNKGLG  239 (325)
Q Consensus       183 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~l~~N~~~~  239 (325)
                      ++++|+++...+..+.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|++..
T Consensus       162 ~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          162 KLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             ECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             EcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            99999999444444444 899999999995 987777888999 999999999998864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=8.1e-20  Score=158.97  Aligned_cols=167  Identities=25%  Similarity=0.320  Sum_probs=144.3

Q ss_pred             CCc--cceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCE
Q 045233           48 DHC--KWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQL  120 (325)
Q Consensus        48 ~~C--~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~  120 (325)
                      +.|  .+..+.|...+     .-..-+++.++++.|.+..+....+.++++|++|++  ++|.+.+..+..+..+++|++
T Consensus        10 C~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNL--DYNQLQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             SEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCE
T ss_pred             eEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEEC--CCCcCCccCHhHhccCCcCCE
Confidence            456  56778886421     111124667778888888888888999999999999  899999988888999999999


Q ss_pred             EecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcC
Q 045233          121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKI  189 (325)
Q Consensus       121 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l  189 (325)
                      |++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|           .+++|++|++++|++
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence            999999999777788899999999999999999766677899999999999998           457899999999999


Q ss_pred             CCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233          190 EGSIPGELTELSRPDCLSLSANKLSGP  216 (325)
Q Consensus       190 ~~~~p~~~~~l~~L~~L~L~~N~l~~~  216 (325)
                      ++..+..+..+++|+.|++++|++++.
T Consensus       168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          168 QSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            988888999999999999999999854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=4.4e-21  Score=185.04  Aligned_cols=163  Identities=23%  Similarity=0.288  Sum_probs=130.0

Q ss_pred             CccceeeEeCCC-CCeeEe------eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEE
Q 045233           49 HCKWIGITCNSA-GSIIGL------NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLL  121 (325)
Q Consensus        49 ~C~w~gv~c~~~-~~v~~l------~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L  121 (325)
                      .|.|.|+ |+.. ..++.+      .++.++++.|.+..+....+.++++|++|++  ++|.+.+..|..+.++++|++|
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL--KSSRINTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEEC--CCCCcCccChhhccccccCCEE
Confidence            4788887 7532 122222      4666777788888877778999999999999  8999998888899999999999


Q ss_pred             ecccCCCCCCCchhhcCCcccceeecccCcCCC-cCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCc
Q 045233          122 DLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG-PIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNK  188 (325)
Q Consensus       122 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~  188 (325)
                      ++++|.+++..|..|+++++|++|++++|++++ ..|..+.++++|++|++++|            .+++|++|++++|+
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            999999998777779999999999999999986 35678999999999999887            35678999999999


Q ss_pred             CCCCCchhhhCCCCCCEEECCCCcCC
Q 045233          189 IEGSIPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       189 l~~~~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      +++..|..+..+++|+.|++++|.+.
T Consensus       160 l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          160 LRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             ccccChhhhhccccCceEecccCccc
Confidence            99888877766555555555444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=5.4e-20  Score=173.62  Aligned_cols=80  Identities=21%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             hcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCC
Q 045233          136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPD  204 (325)
Q Consensus       136 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  204 (325)
                      +..+++|++|+|++|++++..|..|.++++|+.|++++|           .+++|+.|+|++|++++..+..+..+++|+
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            444556666677777777666778888888888888887           467999999999999988888889999999


Q ss_pred             EEECCCCcCCC
Q 045233          205 CLSLSANKLSG  215 (325)
Q Consensus       205 ~L~L~~N~l~~  215 (325)
                      .|++++|++..
T Consensus       294 ~L~L~~Np~~C  304 (452)
T 3zyi_A          294 ELHLHHNPWNC  304 (452)
T ss_dssp             EEECCSSCEEC
T ss_pred             EEEccCCCcCC
Confidence            99999999873

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=8.6e-20  Score=155.82  Aligned_cols=140  Identities=19%  Similarity=0.172  Sum_probs=122.6

Q ss_pred             CCCCCEEEeccccCcCCCCCc-ccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCc
Q 045233           89 FPNLESLRIQAYYYGFTGSIP-SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLK  167 (325)
Q Consensus        89 l~~L~~L~l~~~~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  167 (325)
                      .+.+++|++  ++|.+.+..| ..+..+++|++|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|+
T Consensus        31 ~~~~~~L~L--~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  108 (220)
T 2v70_A           31 PQYTAELRL--NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK  108 (220)
T ss_dssp             CTTCSEEEC--CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred             CCCCCEEEc--CCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence            346789999  8999988755 4588999999999999999977777899999999999999999977777787766654


Q ss_pred             EEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHHH
Q 045233          168 YLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFI  243 (325)
Q Consensus       168 ~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~~  243 (325)
                                   +|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|++.|....
T Consensus       109 -------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          109 -------------TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             -------------EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             -------------EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence                         557778888888899999999999999999999998899999999999999999999987543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=1.3e-19  Score=167.51  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=80.3

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                      +.++++.|.+..++...+..+++|++|++  ++|.+.+..|..+.++++|++|++++|.++...+..|.++++|++|+++
T Consensus        72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYM--GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEECCCCcccccChhhccCCCCcCEEEC--CCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            34556666666666666788888888888  7888887777778888888888888888884444446788888888888


Q ss_pred             cCcCCCcCchhccCCCCCcEEEcCcC
Q 045233          149 NNNLTGPIPSTLARLTNLKYLDLKVT  174 (325)
Q Consensus       149 ~N~l~~~~p~~~~~l~~L~~L~l~~n  174 (325)
                      +|++++..|..+..+++|++|++++|
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             CCccCccChhhccCCCCCCEEECCCC
Confidence            88888766777888888888888776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=3.9e-20  Score=166.20  Aligned_cols=168  Identities=17%  Similarity=0.126  Sum_probs=131.2

Q ss_pred             ccccccCCccccccCccc--------cCCCCCCCEEEeccccCcCCCCCcccc--cCCCcCCEEecccCCCCCCCchhhc
Q 045233           68 LSWYDVDLNAQAQLSQLN--------FSCFPNLESLRIQAYYYGFTGSIPSDI--SALSKLQLLDLSLNRLSGTIPSNIG  137 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~--------~~~l~~L~~L~l~~~~n~~~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~  137 (325)
                      ++.++++.|.+....-..        +.++++|++|++  ++|.+.+.+|..+  ..+++|++|++++|.+++. |..+.
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~  141 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL--ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA  141 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEE--EEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEc--cCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH
Confidence            556777777664432111        125889999999  8888988888876  8889999999999999866 77777


Q ss_pred             CC-----cccceeecccCcCCCcCchhccCCCCCcEEEcCcCC---------------CCCCcEEEccCCcCCCC--C-c
Q 045233          138 NL-----RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS---------------MKNLTWLDISNNKIEGS--I-P  194 (325)
Q Consensus       138 ~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~---------------l~~L~~L~Ls~n~l~~~--~-p  194 (325)
                      .+     ++|++|++++|++++..|..+..+++|++|++++|.               +++|++|++++|++++.  + .
T Consensus       142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence            76     889999999999987777888999999999998883               46888999999988832  2 2


Q ss_pred             hhhhCCCCCCEEECCCCcCCCCCC-CcccCCCCCcEEEccCCCCC
Q 045233          195 GELTELSRPDCLSLSANKLSGPVP-FSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~N~~~  238 (325)
                      ..+..+++|+.|++++|++++.+| ..+..+++|+.|++++|.+.
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            345677889999999999887665 45566788889999988876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=1.7e-19  Score=160.44  Aligned_cols=157  Identities=22%  Similarity=0.206  Sum_probs=137.2

Q ss_pred             CccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCC
Q 045233           75 LNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG  154 (325)
Q Consensus        75 ~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  154 (325)
                      .+.+..++..   -.++++.|++  ++|.+.+..+..+..+++|++|++++|.+++ ++.. ..+++|++|++++|+++ 
T Consensus        19 ~~~l~~ip~~---~~~~l~~L~L--~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-   90 (290)
T 1p9a_G           19 KRNLTALPPD---LPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-   90 (290)
T ss_dssp             TSCCSSCCSC---CCTTCCEEEC--TTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-
T ss_pred             CCCCCcCCCC---CCCCCCEEEc--CCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-
Confidence            4444444432   2378999999  9999998888899999999999999999984 4443 78999999999999999 


Q ss_pred             cCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccC
Q 045233          155 PIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQ  223 (325)
Q Consensus       155 ~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  223 (325)
                      .+|..+..+++|++|++++|           .+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..
T Consensus        91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  170 (290)
T 1p9a_G           91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG  170 (290)
T ss_dssp             SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred             cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence            78888999999999999998           4678999999999999888888899999999999999999777777899


Q ss_pred             CCCCcEEEccCCCCCc
Q 045233          224 LSTMYIVRLSPNKGLG  239 (325)
Q Consensus       224 l~~L~~L~l~~N~~~~  239 (325)
                      +++|+.|++++|++..
T Consensus       171 l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          171 LENLDTLLLQENSLYT  186 (290)
T ss_dssp             CTTCCEEECCSSCCCC
T ss_pred             cCCCCEEECCCCcCCc
Confidence            9999999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=5.7e-20  Score=179.36  Aligned_cols=170  Identities=21%  Similarity=0.231  Sum_probs=146.9

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCc-ccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP-SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      +.++++.|.+..++ ..+..+++|+.|++  ++|.+.+..| ..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus       379 ~~L~L~~n~l~~~~-~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  455 (606)
T 3vq2_A          379 RHLDLSFNGAIIMS-ANFMGLEELQHLDF--QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM  455 (606)
T ss_dssp             CEEECCSCSEEEEC-CCCTTCTTCCEEEC--TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             cEeECCCCccccch-hhccCCCCCCeeEC--CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence            34455556555555 45788899999999  8888888877 67889999999999999999888899999999999999


Q ss_pred             ccCcCCC-cCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          148 GNNNLTG-PIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       148 s~N~l~~-~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      ++|++++ .+|..+..+++|+.|++++|           .+++|++|++++|++++..|..+..+++|+.|++++|+++ 
T Consensus       456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-  534 (606)
T 3vq2_A          456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-  534 (606)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-
T ss_pred             CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-
Confidence            9999997 47888999999999999998           5678999999999999888999999999999999999999 


Q ss_pred             CCCCcccCCC-CCcEEEccCCCCCchHH
Q 045233          216 PVPFSNKQLS-TMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       216 ~~p~~~~~l~-~L~~L~l~~N~~~~~~~  242 (325)
                      .+|..+..++ +|+.+++++|++.|...
T Consensus       535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          535 TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            5677788887 59999999999998654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=6.3e-20  Score=161.63  Aligned_cols=161  Identities=22%  Similarity=0.221  Sum_probs=137.3

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.++++.|.+..++  .+..+++|++|++  ++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        65 L~~L~l~~n~l~~~~--~l~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           65 VRYLALGGNKLHDIS--ALKELTNLTYLIL--TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             CCEEECTTSCCCCCG--GGTTCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEECCCCCCCCch--hhcCCCCCCEEEC--CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            334455566665553  5889999999999  899999888888999999999999999999777777899999999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP  216 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  216 (325)
                      ++|++++..+..+..+++|+.|++++|           .+++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            999999777777899999999999998           467899999999999988888899999999999999998854


Q ss_pred             CCCcccCCCCCcEEEccCCCCCc
Q 045233          217 VPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       217 ~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                             +++++.+++..|.+.+
T Consensus       221 -------~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          221 -------CPGIRYLSEWINKHSG  236 (272)
T ss_dssp             -------TTTTHHHHHHHHHTGG
T ss_pred             -------CcHHHHHHHHHHhCCC
Confidence                   4466777776666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=4.2e-19  Score=170.15  Aligned_cols=154  Identities=21%  Similarity=0.230  Sum_probs=139.1

Q ss_pred             CCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCC--CCchhhcCCcccceeecccCcCCCcCch-hccCC
Q 045233           87 SCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG--TIPSNIGNLRNLVHLDLGNNNLTGPIPS-TLARL  163 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l  163 (325)
                      ..+++|++|++  ++|.+.+..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|. .+..+
T Consensus       321 ~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l  398 (520)
T 2z7x_B          321 SKISPFLHLDF--SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT  398 (520)
T ss_dssp             SSCCCCCEEEC--CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred             hhCCcccEEEe--ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence            68999999999  9999999999999999999999999999996  5678899999999999999999975775 48899


Q ss_pred             CCCcEEEcCcCCC---------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccC
Q 045233          164 TNLKYLDLKVTSM---------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSP  234 (325)
Q Consensus       164 ~~L~~L~l~~n~l---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~  234 (325)
                      ++|++|++++|.+         ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.+++++
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence            9999999999965         69999999999999 7888888999999999999999954334489999999999999


Q ss_pred             CCCCchHHH
Q 045233          235 NKGLGSNFI  243 (325)
Q Consensus       235 N~~~~~~~~  243 (325)
                      |++.|....
T Consensus       478 N~~~c~c~~  486 (520)
T 2z7x_B          478 NPWDCSCPR  486 (520)
T ss_dssp             SCBCCCHHH
T ss_pred             CCCcccCCc
Confidence            999997654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=1.2e-19  Score=177.15  Aligned_cols=165  Identities=19%  Similarity=0.212  Sum_probs=137.4

Q ss_pred             ceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC
Q 045233           52 WIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN  126 (325)
Q Consensus        52 w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n  126 (325)
                      +..+.|...+     .-..-+++.++++.|.+..+....|.++++|++|++  ++|.+.+..|..|.++++|++|++++|
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL--TRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEEC--TTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEEC--CCCccceeChhhccCccccCeeeCCCC
Confidence            4567886431     111124566777888888888888999999999999  899999988999999999999999999


Q ss_pred             CCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCch
Q 045233          127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPG  195 (325)
Q Consensus       127 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~  195 (325)
                      .+++..|..|.++++|++|++++|++++..|..+.++++|++|++++|           .+++|++|++++|.+++..|.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence            999888999999999999999999999766788999999999999988           346789999999999988888


Q ss_pred             hhhCCCCCC--EEECCCCcCCCCCC
Q 045233          196 ELTELSRPD--CLSLSANKLSGPVP  218 (325)
Q Consensus       196 ~~~~l~~L~--~L~L~~N~l~~~~p  218 (325)
                      .+..+++|+  .|++++|.+++..|
T Consensus       172 ~~~~l~~L~~l~L~l~~n~l~~~~~  196 (606)
T 3t6q_A          172 DMSSLQQATNLSLNLNGNDIAGIEP  196 (606)
T ss_dssp             HHHTTTTCCSEEEECTTCCCCEECT
T ss_pred             hhhhhcccceeEEecCCCccCccCh
Confidence            888888888  77777777665443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=1.3e-19  Score=176.82  Aligned_cols=171  Identities=24%  Similarity=0.253  Sum_probs=129.7

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCccc-ccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSD-ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      +.++++.|.+..+....+..+++|+.|++  ++|.+.+..|.. +..+++|++|++++|.+++..|..+..+++|++|++
T Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  456 (606)
T 3t6q_A          379 QSLNLSYNEPLSLKTEAFKECPQLELLDL--AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL  456 (606)
T ss_dssp             CEEECCSCSCEEECTTTTTTCTTCSEEEC--TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcCCcCCHHHhcCCccCCeEEC--CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence            34445556655555556777788888888  777777665544 777788888888888887777777788888888888


Q ss_pred             ccCcCCCc---CchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcC
Q 045233          148 GNNNLTGP---IPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL  213 (325)
Q Consensus       148 s~N~l~~~---~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l  213 (325)
                      ++|++++.   .+..+..+++|++|++++|           .+++|++|++++|++++..|..+..++.| .|++++|++
T Consensus       457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI  535 (606)
T ss_dssp             TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred             CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence            88887752   2356777888888888877           45678888888888888888888888888 888888888


Q ss_pred             CCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          214 SGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       214 ~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      ++.+|..+..+++|+.+++++|++.|...
T Consensus       536 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          536 SIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            87777778888888888888888887544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=2.2e-19  Score=164.67  Aligned_cols=151  Identities=23%  Similarity=0.111  Sum_probs=101.3

Q ss_pred             CCCEEEeccccCcCCCCCccccc-CCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233           91 NLESLRIQAYYYGFTGSIPSDIS-ALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL  169 (325)
Q Consensus        91 ~L~~L~l~~~~n~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  169 (325)
                      .++.|++  ++|.+.+..+..+. .+++|++|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|++|
T Consensus        40 ~l~~L~L--s~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           40 YTALLDL--SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TCSEEEC--CSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEEC--CCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            4556666  55555555555454 56666666666666654444555666666666666666654444455566666666


Q ss_pred             EcCcC-----------CCCCCcEEEccCCcCCCCCchhh---hCCCCCCEEECCCCcCCCCCCCcccCCCC--CcEEEcc
Q 045233          170 DLKVT-----------SMKNLTWLDISNNKIEGSIPGEL---TELSRPDCLSLSANKLSGPVPFSNKQLST--MYIVRLS  233 (325)
Q Consensus       170 ~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~l~  233 (325)
                      ++++|           .+++|+.|+|++|++++..+..+   ..+++|+.|+|++|+|++..+..+..++.  ++.|+++
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence            66655           34567778888888886555555   57999999999999999766677888887  4889999


Q ss_pred             CCCCCchHHH
Q 045233          234 PNKGLGSNFI  243 (325)
Q Consensus       234 ~N~~~~~~~~  243 (325)
                      +|++.|....
T Consensus       198 ~N~~~C~C~l  207 (361)
T 2xot_A          198 NNPLECDCKL  207 (361)
T ss_dssp             SSCEECCHHH
T ss_pred             CCCccCCcCc
Confidence            9999987654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=1.1e-19  Score=173.17  Aligned_cols=126  Identities=21%  Similarity=0.139  Sum_probs=110.4

Q ss_pred             CCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhcc-CCCCCcEEEcCcC---------CCCCCcEEEc
Q 045233          115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLA-RLTNLKYLDLKVT---------SMKNLTWLDI  184 (325)
Q Consensus       115 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~n---------~l~~L~~L~L  184 (325)
                      +++|++|++++|.+++..|..++++++|++|+|++|.+++..|..+. .+++|+.|++++|         .+++|+.|+|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L  198 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL  198 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEEC
Confidence            46677778888888877788889999999999999999988888876 7999999999999         4679999999


Q ss_pred             cCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          185 SNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       185 s~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      ++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.+++++|++.|...
T Consensus       199 s~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          199 SSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             CSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             CCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence            9999996555 58999999999999999995 67778999999999999999997643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=1.2e-19  Score=177.01  Aligned_cols=171  Identities=20%  Similarity=0.199  Sum_probs=148.3

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      +++.++++.|.+..+....|.++++|++|++  ++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDL--SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeC--CCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            4556677788888888888999999999999  89999988888999999999999999999988899999999999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCchhhhCCCCCC----EEECCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIPGELTELSRPD----CLSLSA  210 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~L~~  210 (325)
                      +++|++++..|..++++++|++|++++|            ++++|++|++++|++++..|..+..+++|+    .+++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            9999999777788999999999999988            457899999999999988888777766554    899999


Q ss_pred             CcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          211 NKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       211 N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      |++++..+..+... +|+.|++++|.+.+.
T Consensus       191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~  219 (606)
T 3vq2_A          191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSN  219 (606)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCHH
T ss_pred             CCcceeCcccccCc-eeeeeeccCCccchh
Confidence            99996666555544 899999999988753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=2.3e-19  Score=170.25  Aligned_cols=83  Identities=16%  Similarity=0.168  Sum_probs=58.4

Q ss_pred             ccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCc
Q 045233          160 LARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMY  228 (325)
Q Consensus       160 ~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  228 (325)
                      +..+++|+.|++++|           .+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+
T Consensus       244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  323 (477)
T 2id5_A          244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE  323 (477)
T ss_dssp             HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred             hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence            444555555555555           345666777777777766677777778888888888888766666777788888


Q ss_pred             EEEccCCCCCchHH
Q 045233          229 IVRLSPNKGLGSNF  242 (325)
Q Consensus       229 ~L~l~~N~~~~~~~  242 (325)
                      .|++++|++.|...
T Consensus       324 ~L~l~~N~l~c~c~  337 (477)
T 2id5_A          324 TLILDSNPLACDCR  337 (477)
T ss_dssp             EEECCSSCEECSGG
T ss_pred             EEEccCCCccCccc
Confidence            88888888877643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=9.7e-20  Score=163.63  Aligned_cols=167  Identities=20%  Similarity=0.204  Sum_probs=139.1

Q ss_pred             ccccccCCccccccCcccc--CCCCCCCEEEeccccCcCCCCCcccccCC-----CcCCEEecccCCCCCCCchhhcCCc
Q 045233           68 LSWYDVDLNAQAQLSQLNF--SCFPNLESLRIQAYYYGFTGSIPSDISAL-----SKLQLLDLSLNRLSGTIPSNIGNLR  140 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~--~~l~~L~~L~l~~~~n~~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~~~~l~  140 (325)
                      |+.++++.|.+.......+  ..+++|++|++  ++|.+.+. |..+..+     ++|++|++++|++++..|..|+.++
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L--s~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNL--RNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEE--ESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEc--cCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            3345556666653322233  88999999999  89999987 7777776     9999999999999988889999999


Q ss_pred             ccceeecccCcCCCc--Cchhc--cCCCCCcEEEcCcCC--------------CCCCcEEEccCCcCCCCCc-hhhhCCC
Q 045233          141 NLVHLDLGNNNLTGP--IPSTL--ARLTNLKYLDLKVTS--------------MKNLTWLDISNNKIEGSIP-GELTELS  201 (325)
Q Consensus       141 ~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~l~~n~--------------l~~L~~L~Ls~n~l~~~~p-~~~~~l~  201 (325)
                      +|++|++++|++.+.  .|..+  ..+++|++|++++|.              +++|++|++++|++++..| ..+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            999999999998865  34455  889999999999993              4699999999999998775 4567789


Q ss_pred             CCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          202 RPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       202 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      +|+.|++++|+++ .+|..+.  ++|+.|++++|++.+.
T Consensus       254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred             CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence            9999999999999 7777666  8999999999998763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=6.6e-19  Score=174.16  Aligned_cols=189  Identities=23%  Similarity=0.237  Sum_probs=158.9

Q ss_pred             CccceeeEeCCC-----CCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEec
Q 045233           49 HCKWIGITCNSA-----GSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDL  123 (325)
Q Consensus        49 ~C~w~gv~c~~~-----~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~L  123 (325)
                      .|.+..+.|...     +.-..-+++.++++.|.+..++...|.++++|++|++  ++|.+.+..|..+.++++|++|++
T Consensus         3 ~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L   80 (680)
T 1ziw_A            3 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV--GFNTISKLEPELCQKLPMLKVLNL   80 (680)
T ss_dssp             -CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEEC--CSSCCCCCCTTHHHHCTTCCEEEC
T ss_pred             eeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEEC--CCCccCccCHHHHhcccCcCEEEC
Confidence            355566777532     1111124566777788888888888999999999999  899999999999999999999999


Q ss_pred             ccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCC
Q 045233          124 SLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGS  192 (325)
Q Consensus       124 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~  192 (325)
                      ++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++++|           .+++|++|++++|.+++.
T Consensus        81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            999999655557999999999999999999777788999999999999998           467899999999999988


Q ss_pred             Cchhhh--CCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233          193 IPGELT--ELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       193 ~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      .+..+.  .+++|+.|++++|.+++..|..+..+++|+.+++.+|.+..
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~  209 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP  209 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHH
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccCh
Confidence            877665  56899999999999999889889888888888888877653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=1.4e-19  Score=162.91  Aligned_cols=167  Identities=18%  Similarity=0.117  Sum_probs=128.7

Q ss_pred             ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcc----------------cccCCCcCCEEecccCCCCCCCc
Q 045233           70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPS----------------DISALSKLQLLDLSLNRLSGTIP  133 (325)
Q Consensus        70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~----------------~l~~l~~L~~L~Ls~n~l~~~~p  133 (325)
                      .++++.|.+..+..  +..+++|++|++  ++|.+.+..+.                ....+++|++|++++|.+++..+
T Consensus        62 ~L~Ls~n~l~~~~~--~~~l~~L~~L~L--s~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           62 LLNLSSNVLYETLD--LESLSTLRTLDL--NNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             EEECTTSCCEEEEE--ETTCTTCCEEEC--CSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG
T ss_pred             EEECCCCcCCcchh--hhhcCCCCEEEC--cCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccc
Confidence            34444555444332  677788888888  66665532110                01234567777777787876666


Q ss_pred             hhhcCCcccceeecccCcCCCcCchhc-cCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCC
Q 045233          134 SNIGNLRNLVHLDLGNNNLTGPIPSTL-ARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRP  203 (325)
Q Consensus       134 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  203 (325)
                      ..+..+++|++|++++|++++..|..+ ..+++|++|++++|         .+++|++|++++|++++. |..+..+++|
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L  216 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV  216 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc-hhhhcccCcc
Confidence            778889999999999999997777766 47899999999998         368999999999999955 5568999999


Q ss_pred             CEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          204 DCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      +.|++++|+++ .+|..+..+++|+.|++++|++.|...
T Consensus       217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred             cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence            99999999999 567788999999999999999996543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=1.9e-18  Score=167.43  Aligned_cols=172  Identities=23%  Similarity=0.210  Sum_probs=144.5

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCC--CCchhhcCCccccee
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG--TIPSNIGNLRNLVHL  145 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L  145 (325)
                      ++.++++.+.+..+.  ....+++|++|++  ++|.+.+..|..+.++++|++|++++|++++  .+|..+.++++|++|
T Consensus       333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          333 IKMLSISDTPFIHMV--CPPSPSSFTFLNF--TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             CSEEEEESSCCCCCC--CCSSCCCCCEEEC--CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             ceEEEccCCCccccc--CccCCCCceEEEC--CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence            334444445443322  1268899999999  9999999999999999999999999999995  345678999999999


Q ss_pred             ecccCcCCCcCch-hccCCCCCcEEEcCcCCC---------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          146 DLGNNNLTGPIPS-TLARLTNLKYLDLKVTSM---------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       146 ~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~n~l---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      ++++|++++.+|. .+..+++|++|++++|.+         ++|++|++++|+++ .+|..+..+++|+.|++++|++++
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS  487 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred             ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC
Confidence            9999999975665 588999999999999965         69999999999999 678777799999999999999995


Q ss_pred             CCCCcccCCCCCcEEEccCCCCCchHHHH
Q 045233          216 PVPFSNKQLSTMYIVRLSPNKGLGSNFII  244 (325)
Q Consensus       216 ~~p~~~~~l~~L~~L~l~~N~~~~~~~~~  244 (325)
                      ..+..+..+++|+.+++++|++.|.....
T Consensus       488 l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          488 VPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            44444899999999999999999976543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=1.3e-18  Score=160.78  Aligned_cols=170  Identities=23%  Similarity=0.243  Sum_probs=127.2

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.++++.|.+..++...+..+++|++|++  ++|.+....+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        95 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  172 (390)
T 3o6n_A           95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVL--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL  172 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred             cCEEECCCCCCCcCCHHHhcCCCCCCEEEC--CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence            334566677777777777899999999999  889888655555789999999999999999777888999999999999


Q ss_pred             ccCcCCCcCchhccCC-------------------------------------CCCcEEEcCcC---------CCCCCcE
Q 045233          148 GNNNLTGPIPSTLARL-------------------------------------TNLKYLDLKVT---------SMKNLTW  181 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l-------------------------------------~~L~~L~l~~n---------~l~~L~~  181 (325)
                      ++|++++.....+..+                                     ++|+.|++++|         .+++|++
T Consensus       173 ~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~  252 (390)
T 3o6n_A          173 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE  252 (390)
T ss_dssp             CSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             CCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccE
Confidence            9999985432222222                                     13344444443         3457777


Q ss_pred             EEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          182 LDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       182 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      |++++|.+++..|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|++...
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~  310 (390)
T 3o6n_A          253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV  310 (390)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC
T ss_pred             EECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec
Confidence            8888888777777778888888888888888874 455556778888888888877643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.79  E-value=2.2e-19  Score=173.66  Aligned_cols=171  Identities=22%  Similarity=0.251  Sum_probs=143.1

Q ss_pred             ccccCCccccccC--ccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCc-hhhcCCcccceee
Q 045233           70 WYDVDLNAQAQLS--QLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP-SNIGNLRNLVHLD  146 (325)
Q Consensus        70 ~l~~~~n~~~~l~--~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~  146 (325)
                      .++++.|.+....  ...+..+++|++|++  ++|.+.+..+ .+..+++|++|++++|.+.+..| ..+..+++|++|+
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l--~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  427 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDL--SFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  427 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEEC--CSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred             EEeCcCCccCccccccccccccCccCEEEC--CCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence            3444455444333  234667788888888  7777776444 48889999999999999886655 4688999999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      +++|++++..|..+..+++|++|++++|            .+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus       428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            9999999888889999999999999988            4678999999999999888999999999999999999999


Q ss_pred             CCCCCcccCCCCCcEEEccCCCCCchHHH
Q 045233          215 GPVPFSNKQLSTMYIVRLSPNKGLGSNFI  243 (325)
Q Consensus       215 ~~~p~~~~~l~~L~~L~l~~N~~~~~~~~  243 (325)
                      +.+|..+..+++|+.+++++|++.|....
T Consensus       508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            88888899999999999999999987543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=4.7e-19  Score=179.51  Aligned_cols=183  Identities=22%  Similarity=0.225  Sum_probs=155.6

Q ss_pred             ccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCC-cccccCCCcCCEEecccCCC
Q 045233           50 CKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSI-PSDISALSKLQLLDLSLNRL  128 (325)
Q Consensus        50 C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~-p~~l~~l~~L~~L~Ls~n~l  128 (325)
                      |.|..|.+ -...++.+++     +.|.+..+....|.++++|++|++  ++|...+.+ |..|.++++|++|+|++|.+
T Consensus        14 ~~L~~vP~-lp~~l~~LdL-----s~N~i~~i~~~~~~~l~~L~~LdL--s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l   85 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLL-----SFNYIRTVTASSFPFLEQLQLLEL--GSQYTPLTIDKEAFRNLPNLRILDLGSSKI   85 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEE-----ESCCCCEECSSSCSSCCSCSEEEE--CTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred             CCCCCCCC-CCCCcCEEEC-----CCCcCCccChhHCcccccCeEEeC--CCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence            34555555 3344555554     567777777778999999999999  888666655 77899999999999999999


Q ss_pred             CCCCchhhcCCcccceeecccCcCCCcCchh--ccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCc
Q 045233          129 SGTIPSNIGNLRNLVHLDLGNNNLTGPIPST--LARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIP  194 (325)
Q Consensus       129 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p  194 (325)
                      ++..|..|.++++|++|+|++|++++.+|..  +.++++|++|++++|            ++++|++|++++|.+++..|
T Consensus        86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A           86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            9888999999999999999999999877765  999999999999988            46789999999999999999


Q ss_pred             hhhhCC--CCCCEEECCCCcCCCCCCCcccCCCC------CcEEEccCCCCCch
Q 045233          195 GELTEL--SRPDCLSLSANKLSGPVPFSNKQLST------MYIVRLSPNKGLGS  240 (325)
Q Consensus       195 ~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~L~l~~N~~~~~  240 (325)
                      ..+..+  ++|+.|++++|.+++..|..++.+++      |+.|++++|.+.+.
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  219 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD  219 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred             HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchh
Confidence            998887  89999999999999988887777665      99999999987653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=2.7e-19  Score=160.47  Aligned_cols=146  Identities=20%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             CCCCEEEeccccCcCCCCCcccc--cCCCcCCEEecccCCCCCCCc----hhhcCCcccceeecccCcCCCcCchhccCC
Q 045233           90 PNLESLRIQAYYYGFTGSIPSDI--SALSKLQLLDLSLNRLSGTIP----SNIGNLRNLVHLDLGNNNLTGPIPSTLARL  163 (325)
Q Consensus        90 ~~L~~L~l~~~~n~~~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  163 (325)
                      ++|++|++  ++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++++..|..+..+
T Consensus        91 ~~L~~L~l--~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           91 SRLKELTL--EDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             SCCCEEEE--ESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             CceeEEEe--eCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            44555555  5555555555554  555555555555555554333    223345555555555555554445555555


Q ss_pred             CCCcEEEcCcCC---------------CCCCcEEEccCCcCCCCCch----hhhCCCCCCEEECCCCcCCCCCCCcccCC
Q 045233          164 TNLKYLDLKVTS---------------MKNLTWLDISNNKIEGSIPG----ELTELSRPDCLSLSANKLSGPVPFSNKQL  224 (325)
Q Consensus       164 ~~L~~L~l~~n~---------------l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  224 (325)
                      ++|++|++++|.               +++|++|++++|+++ .++.    .+..+++|++|++++|.+++..|..+..+
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence            555555555552               334555555555554 2222    13445555555555555555444444443


Q ss_pred             ---CCCcEEEccCCCCC
Q 045233          225 ---STMYIVRLSPNKGL  238 (325)
Q Consensus       225 ---~~L~~L~l~~N~~~  238 (325)
                         ++|+.|++++|.+.
T Consensus       248 ~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          248 MWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCCTTCCCEECCSSCCC
T ss_pred             cCcCcCCEEECCCCCCC
Confidence               35555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=3.4e-19  Score=174.07  Aligned_cols=169  Identities=24%  Similarity=0.230  Sum_probs=140.3

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      +++.++++.|.+..++...|.++++|++|++  ++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L--s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC--CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            5667888899999999889999999999999  89999988888899999999999999999976667899999999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCchhhhCCCCC----CEEECCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIPGELTELSRP----DCLSLSA  210 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L----~~L~L~~  210 (325)
                      |++|++++..+..|+++++|++|++++|            .+++|++|++++|++++..|..+..+.++    ..++++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            9999999766677999999999999988            35688999999999988888777665443    4788888


Q ss_pred             CcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          211 NKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       211 N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      |.++...+.. .....+..+++.+|...
T Consensus       211 n~l~~i~~~~-~~~~~~~~l~l~~n~~~  237 (635)
T 4g8a_A          211 NPMNFIQPGA-FKEIRLHKLTLRNNFDS  237 (635)
T ss_dssp             CCCCEECTTT-TTTCEEEEEEEESCCSS
T ss_pred             CcccccCccc-ccchhhhhhhhhccccc
Confidence            8888554444 34445677888888654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=7.6e-19  Score=173.73  Aligned_cols=173  Identities=23%  Similarity=0.259  Sum_probs=148.1

Q ss_pred             ccccccCCcccc-ccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCC--CCCchhhcCCcccce
Q 045233           68 LSWYDVDLNAQA-QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS--GTIPSNIGNLRNLVH  144 (325)
Q Consensus        68 l~~l~~~~n~~~-~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~  144 (325)
                      |+.++++.|.+. .++...+.++++|++|++  ++|.+.+..+..+..+++|++|++++|.+.  +..|..+.++++|++
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYL--SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCTTCCEEEC--CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCEEeCCCCcCccccCcccccCcccccEEec--CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            455667777765 355567889999999999  899998888888999999999999999987  578888999999999


Q ss_pred             eecccCcCCCcCchhccCCCCCcEEEcCcCC-------------------CCCCcEEEccCCcCCCCCchhhhCCCCCCE
Q 045233          145 LDLGNNNLTGPIPSTLARLTNLKYLDLKVTS-------------------MKNLTWLDISNNKIEGSIPGELTELSRPDC  205 (325)
Q Consensus       145 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-------------------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  205 (325)
                      |++++|++++..|..+..+++|++|++++|.                   +++|++|++++|+++...+..|.++++|+.
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            9999999997777789999999999999883                   357899999999999555567899999999


Q ss_pred             EECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          206 LSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       206 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      |++++|++++..+..+..+++|+.|++++|++++...
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            9999999997777778899999999999999887554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=8.8e-19  Score=169.68  Aligned_cols=103  Identities=25%  Similarity=0.309  Sum_probs=86.9

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      +++.++++.|.+..++...|.++++|++|++  ++|.+.+..|..|.++++|++|++++|.++ .+|..  .+++|++|+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRL--SHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEEC--CSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEEC--CCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            4556677788888888778999999999999  899999888888999999999999999998 66665  788999999


Q ss_pred             cccCcCCC-cCchhccCCCCCcEEEcCcC
Q 045233          147 LGNNNLTG-PIPSTLARLTNLKYLDLKVT  174 (325)
Q Consensus       147 Ls~N~l~~-~~p~~~~~l~~L~~L~l~~n  174 (325)
                      +++|++++ ..|..|.++++|++|++++|
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCC
Confidence            99999885 34578888888888888877

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=1.4e-18  Score=169.57  Aligned_cols=167  Identities=23%  Similarity=0.178  Sum_probs=142.3

Q ss_pred             ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233           70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN  149 (325)
Q Consensus        70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  149 (325)
                      .++++.|.+..++...|+++++|++|++  ++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus       103 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  180 (597)
T 3oja_B          103 KLYMGFNAIRYLPPHVFQNVPLLTVLVL--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS  180 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcCCCCCHHHHcCCCCCCEEEe--eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC
Confidence            4566777777777777899999999999  88988876666678999999999999999988888899999999999999


Q ss_pred             CcCCCcC-----------------------------------------------------------chhccCCCCCcEEE
Q 045233          150 NNLTGPI-----------------------------------------------------------PSTLARLTNLKYLD  170 (325)
Q Consensus       150 N~l~~~~-----------------------------------------------------------p~~~~~l~~L~~L~  170 (325)
                      |.+++..                                                           +..+..+++|+.|+
T Consensus       181 N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~  260 (597)
T 3oja_B          181 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVD  260 (597)
T ss_dssp             SCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             CCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEE
Confidence            8887432                                                           12366778999999


Q ss_pred             cCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233          171 LKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       171 l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      +++|           .+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++..
T Consensus       261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             CCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             CCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence            9998           56899999999999995 5777788999999999999999 678788999999999999999875


Q ss_pred             h
Q 045233          240 S  240 (325)
Q Consensus       240 ~  240 (325)
                      .
T Consensus       339 ~  339 (597)
T 3oja_B          339 L  339 (597)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=7.1e-19  Score=169.53  Aligned_cols=165  Identities=22%  Similarity=0.188  Sum_probs=109.7

Q ss_pred             CCccccccCccccCCCCCCCEEEeccccCcCCCCCcc---cccCCCcCCEEecccCCCCCCCc--hhhcCCcccceeecc
Q 045233           74 DLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPS---DISALSKLQLLDLSLNRLSGTIP--SNIGNLRNLVHLDLG  148 (325)
Q Consensus        74 ~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls  148 (325)
                      +.|.+..++...+..+++|++|++  ++|.+.+..|.   .+..+++|++|++++|.+++..+  ..+..+++|++|+++
T Consensus       318 ~~n~l~~ip~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls  395 (549)
T 2z81_A          318 ENSKVFLVPCSFSQHLKSLEFLDL--SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS  395 (549)
T ss_dssp             ESSCCCCCCHHHHHHCTTCCEEEC--CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred             ccCccccCCHHHHhcCccccEEEc--cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence            334444444333345666666666  56666554432   24555666666666666653221  335556666666666


Q ss_pred             cCcCCCcCchhccCCCCCcEEEcCcC----------------------------CCCCCcEEEccCCcCCCCCchhhhCC
Q 045233          149 NNNLTGPIPSTLARLTNLKYLDLKVT----------------------------SMKNLTWLDISNNKIEGSIPGELTEL  200 (325)
Q Consensus       149 ~N~l~~~~p~~~~~l~~L~~L~l~~n----------------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l  200 (325)
                      +|+++ .+|..+..+++|++|++++|                            .+++|++|++++|+++ .+|. ...+
T Consensus       396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l  472 (549)
T 2z81_A          396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLF  472 (549)
T ss_dssp             TCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred             CCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccC
Confidence            66665 45555555555555555444                            3567888888888888 5665 4678


Q ss_pred             CCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHHH
Q 045233          201 SRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFI  243 (325)
Q Consensus       201 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~~  243 (325)
                      ++|+.|++++|++++.+|..+..+++|+.+++++|++.|....
T Consensus       473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            9999999999999998888899999999999999999997653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=2.2e-18  Score=155.93  Aligned_cols=167  Identities=26%  Similarity=0.292  Sum_probs=124.9

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.++++.|.+..+....+..+++|++|++  ++|.+. .+|..+.  ++|++|++++|.+++..+..|.++++|++|++
T Consensus        80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  154 (332)
T 2ft3_A           80 LYALVLVNNKISKIHEKAFSPLRKLQKLYI--SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM  154 (332)
T ss_dssp             CCEEECCSSCCCEECGGGSTTCTTCCEEEC--CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred             CcEEECCCCccCccCHhHhhCcCCCCEEEC--CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence            344556666666666666788888888888  777766 3444433  66777777777777555555666777777777


Q ss_pred             ccCcCCC--cCchhccCC--------------------CCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCc
Q 045233          148 GNNNLTG--PIPSTLARL--------------------TNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIP  194 (325)
Q Consensus       148 s~N~l~~--~~p~~~~~l--------------------~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p  194 (325)
                      ++|.++.  ..|..+..+                    ++|++|++++|           .+++|+.|++++|++++..+
T Consensus       155 ~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  234 (332)
T 2ft3_A          155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN  234 (332)
T ss_dssp             CSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred             CCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence            7776642  333333322                    57888888887           46789999999999998888


Q ss_pred             hhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          195 GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      ..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++...
T Consensus       235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence            88999999999999999999 7788899999999999999998753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=2.7e-18  Score=155.23  Aligned_cols=166  Identities=23%  Similarity=0.244  Sum_probs=128.8

Q ss_pred             ccccCCccccccCccccCCCCCCCEEEecc-------------------ccCcCCCCCcccccCCCcCCEEecccCCCCC
Q 045233           70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQA-------------------YYYGFTGSIPSDISALSKLQLLDLSLNRLSG  130 (325)
Q Consensus        70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~-------------------~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~  130 (325)
                      .++++.|.+..+....+..+++|++|++++                   ++|.+.+..+..+.++++|++|++++|.+..
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             EEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence            344444555444444455555555555500                   3444444445557888999999999999863


Q ss_pred             --CCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhh
Q 045233          131 --TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGEL  197 (325)
Q Consensus       131 --~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~  197 (325)
                        ..+..+.++++|++|++++|+++ .+|..+.  ++|++|++++|           .+++|++|++++|.+++..+..+
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  236 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  236 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence              67788999999999999999998 5666554  79999999988           56789999999999998888889


Q ss_pred             hCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233          198 TELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      ..+++|+.|++++|+++ .+|..+..+++|+.|++++|++..
T Consensus       237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence            99999999999999999 778888999999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=1.5e-18  Score=155.72  Aligned_cols=153  Identities=27%  Similarity=0.390  Sum_probs=78.9

Q ss_pred             ccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCc
Q 045233           72 DVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN  151 (325)
Q Consensus        72 ~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  151 (325)
                      +++.|.+..++.  +..+++|++|++  ++|.+.+.  +.+..+++|++|++++|.+++ ++. +..+++|++|++++|+
T Consensus        69 ~L~~n~i~~~~~--~~~l~~L~~L~L--~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~  140 (308)
T 1h6u_A           69 ELKDNQITDLAP--LKNLTKITELEL--SGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQ  140 (308)
T ss_dssp             ECCSSCCCCCGG--GTTCCSCCEEEC--CSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             EccCCcCCCChh--HccCCCCCEEEc--cCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCc
Confidence            333444444333  555555555555  55554432  235555555555555555553 222 5555555555555555


Q ss_pred             CCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCccc
Q 045233          152 LTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNK  222 (325)
Q Consensus       152 l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  222 (325)
                      +++ ++. +..+++|++|++++|         .+++|+.|++++|++++..+  +..+++|+.|++++|++++..+  +.
T Consensus       141 l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~  214 (308)
T 1h6u_A          141 ITN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA  214 (308)
T ss_dssp             CCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT
T ss_pred             cCc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc
Confidence            553 222 555555555555555         33455555555555553322  4555555555555555554332  45


Q ss_pred             CCCCCcEEEccCCCCC
Q 045233          223 QLSTMYIVRLSPNKGL  238 (325)
Q Consensus       223 ~l~~L~~L~l~~N~~~  238 (325)
                      .+++|+.|++++|++.
T Consensus       215 ~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          215 NTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             TCTTCCEEEEEEEEEE
T ss_pred             CCCCCCEEEccCCeee
Confidence            5555555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=4e-18  Score=152.84  Aligned_cols=157  Identities=27%  Similarity=0.360  Sum_probs=133.9

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      ++++.+.+..++  .+..+++|++|++  ++|.+.+..+  +..+++|++|++++|.+++ ++ .+..+++|++|++++|
T Consensus        46 L~l~~~~i~~l~--~~~~l~~L~~L~L--~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           46 LSAFGTGVTTIE--GVQYLNNLIGLEL--KDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTST  117 (308)
T ss_dssp             EECTTSCCCCCT--TGGGCTTCCEEEC--CSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTS
T ss_pred             EEeeCCCccCch--hhhccCCCCEEEc--cCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCC
Confidence            344455555555  4788999999999  8998886544  9999999999999999985 44 6899999999999999


Q ss_pred             cCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233          151 NLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN  221 (325)
Q Consensus       151 ~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  221 (325)
                      ++++ +|. +..+++|++|++++|         .+++|++|++++|++++. +. +..+++|+.|++++|.+++..+  +
T Consensus       118 ~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l  191 (308)
T 1h6u_A          118 QITD-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--L  191 (308)
T ss_dssp             CCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCCC-chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--h
Confidence            9995 554 899999999999998         457899999999999964 43 8999999999999999996544  7


Q ss_pred             cCCCCCcEEEccCCCCCchH
Q 045233          222 KQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       222 ~~l~~L~~L~l~~N~~~~~~  241 (325)
                      ..+++|+.|++++|++.+..
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCG
T ss_pred             cCCCCCCEEEccCCccCccc
Confidence            89999999999999998754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=1.6e-18  Score=152.65  Aligned_cols=148  Identities=22%  Similarity=0.209  Sum_probs=129.1

Q ss_pred             CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233           90 PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL  169 (325)
Q Consensus        90 ~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  169 (325)
                      ++|++|++  ++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++++|++++..|..+.++++|++|
T Consensus        28 ~~l~~L~l--s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEEC--TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEEC--CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            57999999  8999998877789999999999999999997777789999999999999999998888899999999999


Q ss_pred             EcCcC-----------CCCCCcEEEccCCcCCCC-CchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCc----EEEcc
Q 045233          170 DLKVT-----------SMKNLTWLDISNNKIEGS-IPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMY----IVRLS  233 (325)
Q Consensus       170 ~l~~n-----------~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~l~  233 (325)
                      ++++|           .+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..+++|+    .++++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            99988           457899999999999874 689999999999999999999876666666555555    67777


Q ss_pred             CCCCCc
Q 045233          234 PNKGLG  239 (325)
Q Consensus       234 ~N~~~~  239 (325)
                      +|++..
T Consensus       186 ~n~l~~  191 (276)
T 2z62_A          186 LNPMNF  191 (276)
T ss_dssp             SSCCCE
T ss_pred             CCcccc
Confidence            776653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.9e-18  Score=152.52  Aligned_cols=156  Identities=23%  Similarity=0.333  Sum_probs=131.3

Q ss_pred             ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233           70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN  149 (325)
Q Consensus        70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  149 (325)
                      .++++.+.+..++  .+..+++|+.|++  ++|.+.+..+  +..+++|++|++++|.+++ +| .+..+++|++|++++
T Consensus        50 ~L~l~~~~i~~~~--~~~~l~~L~~L~L--~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           50 QIIANNSDIKSVQ--GIQYLPNVTKLFL--NGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             EEECTTSCCCCCT--TGGGCTTCCEEEC--CSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred             EEEccCCCcccCh--hHhcCCCCCEEEc--cCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence            3444556666664  3778999999999  8999887554  8999999999999999985 44 489999999999999


Q ss_pred             CcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCc
Q 045233          150 NNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS  220 (325)
Q Consensus       150 N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  220 (325)
                      |++++ + +.+..+++|+.|++++|         .+++|++|++++|++++..|  +..+++|+.|++++|.+++. + .
T Consensus       122 n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~  195 (291)
T 1h6t_A          122 NGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-A  195 (291)
T ss_dssp             SCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-G
T ss_pred             CcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-h
Confidence            99995 4 46889999999999998         56789999999999996554  89999999999999999964 4 4


Q ss_pred             ccCCCCCcEEEccCCCCCc
Q 045233          221 NKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       221 ~~~l~~L~~L~l~~N~~~~  239 (325)
                      +..+++|+.|++++|++..
T Consensus       196 l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GTTCTTCSEEEEEEEEEEC
T ss_pred             hccCCCCCEEECcCCcccC
Confidence            8899999999999998754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.77  E-value=7.7e-19  Score=172.61  Aligned_cols=148  Identities=24%  Similarity=0.413  Sum_probs=107.9

Q ss_pred             ccC--CCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCC-CCchhhcCC------cccceeecccCcCCC
Q 045233           85 NFS--CFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSG-TIPSNIGNL------RNLVHLDLGNNNLTG  154 (325)
Q Consensus        85 ~~~--~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~  154 (325)
                      .+.  ++++|++|++  ++|.+.+.+|+.+.++++|++|++++|+ +++ .+|..++.+      ++|++|++++|+++ 
T Consensus       242 ~l~~~~l~~L~~L~L--~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          242 DLKWDNLKDLTDVEV--YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             CCCGGGCTTCCEEEE--ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             hhhhcccCCCCEEEe--cCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            456  8999999999  8999999999999999999999999998 887 788888776      88999999999998 


Q ss_pred             cCch--hccCCCCCcEEEcCcCCC----------CCCcEEEccCCcCCCCCchhhhCCCC-CCEEECCCCcCCCCCCCcc
Q 045233          155 PIPS--TLARLTNLKYLDLKVTSM----------KNLTWLDISNNKIEGSIPGELTELSR-PDCLSLSANKLSGPVPFSN  221 (325)
Q Consensus       155 ~~p~--~~~~l~~L~~L~l~~n~l----------~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~  221 (325)
                      .+|.  .+.++++|++|++++|.+          ++|++|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~  396 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF  396 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence            7887  888999999999888833          24555566666555 45555555555 555555555555 344443


Q ss_pred             cCCC--CCcEEEccCCCC
Q 045233          222 KQLS--TMYIVRLSPNKG  237 (325)
Q Consensus       222 ~~l~--~L~~L~l~~N~~  237 (325)
                      ...+  +|+.|++++|.+
T Consensus       397 ~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          397 DAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             CTTCSSCEEEEECCSSCT
T ss_pred             hhcccCccCEEECcCCcC
Confidence            3322  344444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=166.08  Aligned_cols=43  Identities=21%  Similarity=0.083  Sum_probs=37.1

Q ss_pred             hCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          198 TELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      ..+++|++|++++|++++.+|..++.+++|+.|++++|.+.+.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL  363 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence            5677888999999999988888889999999999999998763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=158.13  Aligned_cols=173  Identities=21%  Similarity=0.233  Sum_probs=147.3

Q ss_pred             eeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCc
Q 045233           54 GITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP  133 (325)
Q Consensus        54 gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  133 (325)
                      ...|...+.   .     +.+.+.+..++.   .-.++|++|++  ++|.+.+..+..+.++++|++|++++|.+++..|
T Consensus        27 ~~~C~~~~~---c-----~~~~~~l~~iP~---~~~~~L~~L~l--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (353)
T 2z80_A           27 SLSCDRNGI---C-----KGSSGSLNSIPS---GLTEAVKSLDL--SNNRITYISNSDLQRCVNLQALVLTSNGINTIEE   93 (353)
T ss_dssp             CCEECTTSE---E-----ECCSTTCSSCCT---TCCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             CCCCCCCeE---e-----eCCCCCcccccc---cccccCcEEEC--CCCcCcccCHHHhccCCCCCEEECCCCccCccCH
Confidence            467766543   2     334555556554   23468999999  8999988777789999999999999999998778


Q ss_pred             hhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCC-cCCCCCchhhhCC
Q 045233          134 SNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNN-KIEGSIPGELTEL  200 (325)
Q Consensus       134 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n-~l~~~~p~~~~~l  200 (325)
                      ..|.++++|++|++++|++++..+..+.++++|++|++++|            .+++|++|++++| .+++..+..+.++
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence            88999999999999999999655556999999999999988            4678999999999 4776778889999


Q ss_pred             CCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233          201 SRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       201 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            999999999999998889999999999999999999754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.1e-18  Score=175.95  Aligned_cols=149  Identities=28%  Similarity=0.372  Sum_probs=128.9

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCC-CCchhhcCCc-------ccceeecccCcCCCcC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSG-TIPSNIGNLR-------NLVHLDLGNNNLTGPI  156 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~  156 (325)
                      |.++++|++|++  ++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.++       +|++|+|++|+++ .+
T Consensus       487 f~~L~~L~~L~L--s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i  563 (876)
T 4ecn_A          487 WSNLKDLTDVEL--YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF  563 (876)
T ss_dssp             GGGCTTCCEEEE--ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred             hccCCCCCEEEC--cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence            338999999999  8999999999999999999999999998 887 7898877766       9999999999999 88


Q ss_pred             ch--hccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCC-CCEEECCCCcCCCCCCCcccCC
Q 045233          157 PS--TLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSR-PDCLSLSANKLSGPVPFSNKQL  224 (325)
Q Consensus       157 p~--~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l  224 (325)
                      |.  .+.++++|+.|++++|         .+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+...
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~  641 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK  641 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred             CChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence            88  8999999999999998         4567889999999999 88888888888 999999999988 667766655


Q ss_pred             CC--CcEEEccCCCCCc
Q 045233          225 ST--MYIVRLSPNKGLG  239 (325)
Q Consensus       225 ~~--L~~L~l~~N~~~~  239 (325)
                      +.  |+.|++++|.+.+
T Consensus       642 ~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          642 SVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             CSSCEEEEECCSSCTTT
T ss_pred             ccCCCCEEECcCCcCCC
Confidence            43  7777777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=8.5e-19  Score=157.25  Aligned_cols=167  Identities=18%  Similarity=0.136  Sum_probs=139.0

Q ss_pred             ccccccCCccccccCcccc--CCCCCCCEEEeccccCcCCCCCc----ccccCCCcCCEEecccCCCCCCCchhhcCCcc
Q 045233           68 LSWYDVDLNAQAQLSQLNF--SCFPNLESLRIQAYYYGFTGSIP----SDISALSKLQLLDLSLNRLSGTIPSNIGNLRN  141 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~--~~l~~L~~L~l~~~~n~~~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  141 (325)
                      ++.++++.|.+.......+  ..+++|++|++  ++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~L--s~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRL--RNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEE--ESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEe--ecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            4445566666665555555  88999999999  8999987655    34567999999999999999888889999999


Q ss_pred             cceeecccCcCCCc--Cc--hhccCCCCCcEEEcCcCC--------------CCCCcEEEccCCcCCCCCchhhhCC---
Q 045233          142 LVHLDLGNNNLTGP--IP--STLARLTNLKYLDLKVTS--------------MKNLTWLDISNNKIEGSIPGELTEL---  200 (325)
Q Consensus       142 L~~L~Ls~N~l~~~--~p--~~~~~l~~L~~L~l~~n~--------------l~~L~~L~Ls~n~l~~~~p~~~~~l---  200 (325)
                      |++|+|++|++.+.  ++  ..+..+++|++|++++|.              +++|++|++++|++++..|..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            99999999998752  22  234789999999999993              3789999999999998888887777   


Q ss_pred             CCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233          201 SRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       201 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      ++|++|++++|+++ .+|..+.  ++|+.|++++|++.+
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence            69999999999999 6677664  799999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=1.9e-18  Score=149.05  Aligned_cols=162  Identities=18%  Similarity=0.197  Sum_probs=138.2

Q ss_pred             ccccccCCcc-ccccCccccCCCCCCCEEEecccc-CcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccc--
Q 045233           68 LSWYDVDLNA-QAQLSQLNFSCFPNLESLRIQAYY-YGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLV--  143 (325)
Q Consensus        68 l~~l~~~~n~-~~~l~~~~~~~l~~L~~L~l~~~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~--  143 (325)
                      |+.++++.|. +..++...|.++++|++|++  ++ |.+.+..+..+..+++|++|++++|.+++ +|. +..+++|+  
T Consensus        57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l--~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEI--RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             CCEEEEECCSSCCEECTTTEESCTTCCEEEE--EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CcEEeCCCCCCcceeCHhHcCCCcCCcEEEC--CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            4455666775 77888778999999999999  87 88888777889999999999999999995 676 88888888  


Q ss_pred             -eeecccC-cCCCcCchhccCCCCCc-EEEcCcCCC----------CCCcEEEccCCc-CCCCCchhhhCC-CCCCEEEC
Q 045233          144 -HLDLGNN-NLTGPIPSTLARLTNLK-YLDLKVTSM----------KNLTWLDISNNK-IEGSIPGELTEL-SRPDCLSL  208 (325)
Q Consensus       144 -~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~l~~n~l----------~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~L  208 (325)
                       +|++++| ++++..+..|..+++|+ .|++++|.+          ++|+.|++++|+ +++..+..|..+ ++|+.|++
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence             9999999 99976677899999999 999998832          579999999995 997777889999 99999999


Q ss_pred             CCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233          209 SANKLSGPVPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       209 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~  236 (325)
                      ++|++++. |..  .+++|+.|+++++.
T Consensus       213 ~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          213 SQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CCCccccC-Chh--HhccCceeeccCcc
Confidence            99999954 443  67889999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=5.4e-18  Score=142.01  Aligned_cols=142  Identities=17%  Similarity=0.192  Sum_probs=98.3

Q ss_pred             CCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233           87 SCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL  166 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  166 (325)
                      ..+++|+.|++  ++|.+. .+| .+..+++|++|++++|.++  .++.+..+++|++|++++|++++..|..+..+++|
T Consensus        41 ~~l~~L~~L~l--~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITL--ANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEE--ESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhcCCccEEec--cCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            44566666666  556555 333 4666666666666666554  22356666666666666666665556666666666


Q ss_pred             cEEEcCcC-----------CCCCCcEEEccCCc-CCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccC
Q 045233          167 KYLDLKVT-----------SMKNLTWLDISNNK-IEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSP  234 (325)
Q Consensus       167 ~~L~l~~n-----------~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~  234 (325)
                      ++|++++|           .+++|++|++++|. ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeC
Confidence            66666666           45677788888887 55 556 689999999999999999964 4 688999999999999


Q ss_pred             CCCC
Q 045233          235 NKGL  238 (325)
Q Consensus       235 N~~~  238 (325)
                      |++.
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            9864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.76  E-value=5.4e-18  Score=154.07  Aligned_cols=120  Identities=23%  Similarity=0.363  Sum_probs=55.4

Q ss_pred             ccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEE
Q 045233          112 ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWL  182 (325)
Q Consensus       112 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L  182 (325)
                      +..+++|++|++++|.+++. +. +..+++|++|++++|.+++ + +.+..+++|++|++++|         .+++|++|
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  292 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSL  292 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEE
Confidence            33444444444444444422 22 4444444444444444442 2 23444445555555444         23445555


Q ss_pred             EccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCC
Q 045233          183 DISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       183 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~  237 (325)
                      ++++|.+++..|..+..+++|+.|++++|++++..|  +..+++|+.+++++|++
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            555555554444445555555555555555554333  44455555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=1.6e-18  Score=146.38  Aligned_cols=151  Identities=21%  Similarity=0.231  Sum_probs=112.5

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      +++.++++.|.+..++...+..+++|++|++  ++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYL--GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEEC--CCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            3445556677777777777899999999999  89999977777789999999999999999976667789999999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLST  226 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  226 (325)
                      +++|++++..+..+..+++|++|             ++++|++++..+..+..+++|+.|++++|++.+       .+++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L-------------~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~  166 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDL-------------RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPG  166 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEE-------------ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEE-------------ECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCC
Confidence            99999997666667777766665             455555554445556666667777776666553       2334


Q ss_pred             CcEEEccCCCCCc
Q 045233          227 MYIVRLSPNKGLG  239 (325)
Q Consensus       227 L~~L~l~~N~~~~  239 (325)
                      |+.|+++.|.+.+
T Consensus       167 l~~L~~~~n~~~g  179 (208)
T 2o6s_A          167 IRYLSEWINKHSG  179 (208)
T ss_dssp             THHHHHHHHHCTT
T ss_pred             HHHHHHHHHhCCc
Confidence            5555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.75  E-value=5.1e-18  Score=164.11  Aligned_cols=171  Identities=24%  Similarity=0.242  Sum_probs=148.3

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      +++.++++.|.+..+....|.++++|++|++  ++|.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEEC--CCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            4556777788888888888999999999999  88999888888899999999999999999977778899999999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCchhhhCCCCC----CEEECCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIPGELTELSRP----DCLSLSA  210 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L----~~L~L~~  210 (325)
                      +++|++++..+..++++++|++|++++|            ++++|++|++++|.+++..|..+..+++|    ..+++++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            9999999655557999999999999988            35689999999999998888888888888    8999999


Q ss_pred             CcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          211 NKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       211 N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      |.+++..|..+... +|+.+++++|.....
T Consensus       187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~  215 (570)
T 2z63_A          187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLN  215 (570)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCTT
T ss_pred             CCceecCHHHhccC-cceeEeccccccccc
Confidence            99998777777665 799999999865543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=2.5e-18  Score=156.87  Aligned_cols=187  Identities=21%  Similarity=0.133  Sum_probs=128.1

Q ss_pred             CCccceeeEeCCCCCeeE------eeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCc-ccccCCCcCCE
Q 045233           48 DHCKWIGITCNSAGSIIG------LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP-SDISALSKLQL  120 (325)
Q Consensus        48 ~~C~w~gv~c~~~~~v~~------l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p-~~l~~l~~L~~  120 (325)
                      +.|.+..|.|... .+++      -+++.++++.|.+..++...|.++++|++|++  ++|.+.+.+| ..|.+++++++
T Consensus         7 C~C~~~~v~C~~~-~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L--s~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X            7 CHCSNRVFLCQES-KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI--SQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             SEEETTEEEEEST-TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEE--ECCTTCCEECTTSBCSCTTCCE
T ss_pred             cEeeCCEEEecCC-CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEEC--cCCCCCCccChhHhhcchhhhh
Confidence            5689999999642 1222      25667788899999999989999999999999  8999877665 45788888775


Q ss_pred             -EecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC------------CC-CCCcEEEccC
Q 045233          121 -LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT------------SM-KNLTWLDISN  186 (325)
Q Consensus       121 -L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l-~~L~~L~Ls~  186 (325)
                       +.++.|+++...|..|.++++|++|++++|+++...+..+....++..|++..+            .+ ..++.|++++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence             667789999777888999999999999999998655555556666666666443            11 2455666666


Q ss_pred             CcCCCCCchhhhCCCCCCEEECCC-CcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          187 NKIEGSIPGELTELSRPDCLSLSA-NKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       187 n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      |+++. +|.......+|+.+++.+ |.++...+..|..+++|+.|++++|++.
T Consensus       164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          164 NGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             ccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            66663 333333344555555543 3344333334555555666666555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=2.9e-18  Score=173.70  Aligned_cols=77  Identities=26%  Similarity=0.323  Sum_probs=36.8

Q ss_pred             CccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC
Q 045233           75 LNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT  153 (325)
Q Consensus        75 ~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  153 (325)
                      .|.+..+....|.++++|++|++  ++|.+.+..|..+..+++|++|++++|.+.+..+..|.++++|++|++++|.++
T Consensus       299 ~n~i~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          299 YNKINKIADEAFYGLDNLQVLNL--SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEEE--ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCcCCCCChHHhcCCCCCCEEEC--CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            33333333334444555555555  444444444444555555555555555554444444444555555555554443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.1e-17  Score=163.01  Aligned_cols=158  Identities=23%  Similarity=0.334  Sum_probs=135.3

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.++++.+.+..++  .+..+++|+.|+|  ++|.+.+..|  +..+++|+.|+|++|.+++ +| .+..+++|++|+|
T Consensus        45 L~~L~l~~n~i~~l~--~l~~l~~L~~L~L--s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           45 IDQIIANNSDIKSVQ--GIQYLPNVTKLFL--NGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             CCCCBCTTCCCCCCT--TGGGCTTCCEEEC--TTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred             CCEEECcCCCCCCCh--HHccCCCCCEEEe--eCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence            444566667776665  4788999999999  8999887655  8899999999999999984 44 6899999999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP  218 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  218 (325)
                      ++|++++ + +.+..+++|+.|+|++|         .+++|+.|+|++|.+++..|  +..+++|+.|+|++|+|++.  
T Consensus       117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--  190 (605)
T 1m9s_A          117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--  190 (605)
T ss_dssp             TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--
T ss_pred             cCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--
Confidence            9999995 4 45899999999999998         56789999999999997666  89999999999999999964  


Q ss_pred             CcccCCCCCcEEEccCCCCCc
Q 045233          219 FSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       219 ~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      ..+..+++|+.|++++|++..
T Consensus       191 ~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          191 RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GGGTTCTTCSEEECCSEEEEC
T ss_pred             hHHccCCCCCEEEccCCcCcC
Confidence            358999999999999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=1e-17  Score=146.89  Aligned_cols=155  Identities=21%  Similarity=0.273  Sum_probs=122.2

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      ++++.+.+..+.  .+..+++|+.|++  ++|.+.. +| .+..+++|++|++++|.+++. +. +..+++|++|++++|
T Consensus        24 l~l~~~~i~~~~--~~~~l~~L~~L~l--~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           24 QNLGKQSVTDLV--SQKELSGVQNFNG--DNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHTCSCTTSEE--CHHHHTTCSEEEC--TTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSS
T ss_pred             HHhcCCCccccc--chhhcCcCcEEEC--cCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCC
Confidence            334455554444  3667888899999  7777764 44 678888899999999988854 44 888889999999999


Q ss_pred             cCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233          151 NLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN  221 (325)
Q Consensus       151 ~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  221 (325)
                      ++++ +|.. .. ++|+.|++++|         .+++|++|++++|++++. + .+..+++|+.|++++|++++.  ..+
T Consensus        96 ~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l  168 (263)
T 1xeu_A           96 RLKN-LNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGL  168 (263)
T ss_dssp             CCSC-CTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred             ccCC-cCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHh
Confidence            8884 4443 33 88899998888         567899999999999964 4 688999999999999999976  668


Q ss_pred             cCCCCCcEEEccCCCCCch
Q 045233          222 KQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       222 ~~l~~L~~L~l~~N~~~~~  240 (325)
                      ..+++|+.|++++|++.+.
T Consensus       169 ~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTCCCCCEEEEEEEEEECC
T ss_pred             ccCCCCCEEeCCCCcccCC
Confidence            8999999999999987654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.7e-17  Score=139.00  Aligned_cols=137  Identities=18%  Similarity=0.249  Sum_probs=115.7

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      ++++.+.+..++  .+..+++|++|++  ++|.+.  .++.+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        49 L~l~~n~i~~l~--~l~~l~~L~~L~l--~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           49 ITLANINVTDLT--GIEYAHNIKDLTI--NNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             EEEESSCCSCCT--TGGGCTTCSEEEE--ESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             EeccCCCccChH--HHhcCCCCCEEEc--cCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            344456666655  4788999999999  788554  3457899999999999999999878888999999999999999


Q ss_pred             cCCCcCchhccCCCCCcEEEcCcCC----------CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          151 NLTGPIPSTLARLTNLKYLDLKVTS----------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       151 ~l~~~~p~~~~~l~~L~~L~l~~n~----------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      ++++..|..+..+++|++|++++|.          +++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9998888999999999999999994          6789999999999995 44 78999999999999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=3.4e-17  Score=148.77  Aligned_cols=143  Identities=24%  Similarity=0.358  Sum_probs=94.3

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +..+++|++|++  ++|.+.+..+  +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++..+  +..+++
T Consensus       151 ~~~l~~L~~L~l--~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~  222 (347)
T 4fmz_A          151 LSNMTGLNYLTV--TESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTR  222 (347)
T ss_dssp             GTTCTTCCEEEC--CSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred             hhhCCCCcEEEe--cCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCc
Confidence            667777777777  6666655433  6677777777777777763 333 6667777777777777764322  666777


Q ss_pred             CcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233          166 LKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       166 L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~  236 (325)
                      |+.|++++|         .+++|++|++++|.+++.  +.+..+++|+.|++++|++++.  ..+..+++|+.|++++|+
T Consensus       223 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             CCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCc
Confidence            777777766         345677777777776642  3566677777777777776643  345666777777777776


Q ss_pred             CCch
Q 045233          237 GLGS  240 (325)
Q Consensus       237 ~~~~  240 (325)
                      +...
T Consensus       299 l~~~  302 (347)
T 4fmz_A          299 LGNE  302 (347)
T ss_dssp             CCGG
T ss_pred             CCCc
Confidence            6543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.72  E-value=4.3e-17  Score=159.14  Aligned_cols=156  Identities=22%  Similarity=0.230  Sum_probs=136.2

Q ss_pred             ccCCCCCCCEEEeccccCcCCCCCc-ccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC-CcCchhccC
Q 045233           85 NFSCFPNLESLRIQAYYYGFTGSIP-SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT-GPIPSTLAR  162 (325)
Q Consensus        85 ~~~~l~~L~~L~l~~~~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~  162 (325)
                      .+..++.|+.+++  ..+......+ ..+..+++++.++++.|.+.+..+..+..+++|++|++++|++. +..|..|..
T Consensus       415 ~~~~l~~L~~l~l--~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~  492 (635)
T 4g8a_A          415 NFLGLEQLEHLDF--QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  492 (635)
T ss_dssp             CCTTCTTCCEEEC--TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             cccccccccchhh--hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh
Confidence            3667888888888  6666555443 45788999999999999999888888999999999999999854 456788999


Q ss_pred             CCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCC-CCCcEE
Q 045233          163 LTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQL-STMYIV  230 (325)
Q Consensus       163 l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L  230 (325)
                      +++|++|++++|           ++++|++|+|++|++++..|..|.++++|+.|++++|+|++..|..+..+ ++|+.|
T Consensus       493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  572 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred             ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence            999999999998           56789999999999999889999999999999999999999999999888 689999


Q ss_pred             EccCCCCCchHH
Q 045233          231 RLSPNKGLGSNF  242 (325)
Q Consensus       231 ~l~~N~~~~~~~  242 (325)
                      ++++|++.|..-
T Consensus       573 ~L~~Np~~C~C~  584 (635)
T 4g8a_A          573 NLTQNDFACTCE  584 (635)
T ss_dssp             ECTTCCBCCSGG
T ss_pred             EeeCCCCcccCC
Confidence            999999998754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=4.6e-17  Score=135.86  Aligned_cols=127  Identities=27%  Similarity=0.306  Sum_probs=94.3

Q ss_pred             ccCcCCCCCcccccCCCcCCEEecccCCCCCCCch-hhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCC
Q 045233          100 YYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPS-NIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN  178 (325)
Q Consensus       100 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~  178 (325)
                      +++.+. .+|..+..  +|++|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++          
T Consensus        16 s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~----------   82 (192)
T 1w8a_A           16 TGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE----------   82 (192)
T ss_dssp             TTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE----------
T ss_pred             CCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE----------
Confidence            455543 34444432  677888888888755443 3778888888888888888777777776655444          


Q ss_pred             CcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          179 LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       179 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                         |+|++|++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|++.|...
T Consensus        83 ---L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           83 ---LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ---EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ---EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence               4566677776777778888889999999999988888888899999999999999988754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=4e-17  Score=139.21  Aligned_cols=134  Identities=19%  Similarity=0.225  Sum_probs=115.2

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      +++.++++.|.+..++...|..+++|++|++  ++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~L--s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDL--SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEEC--CSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEEC--CCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            3445566677888888888999999999999  99999998899999999999999999999966666689999999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      |++|++++..|..|..+++|+             +|+|++|++++..+..+..+++|+.|++++|++..
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~-------------~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLN-------------LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCC-------------EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCCEeCHHHcCCCCCCC-------------EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999999988788887766655             45677788887777789999999999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=4.1e-18  Score=153.29  Aligned_cols=159  Identities=23%  Similarity=0.197  Sum_probs=114.4

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      ++.++++.|.+..+....+..+++|++|++  ++|.+.+..+  +..+++|++|++++|.+++ ++    ..++|++|++
T Consensus        36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l  106 (317)
T 3o53_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNL--SSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA  106 (317)
T ss_dssp             CSEEECTTSCCCCCCHHHHTTCTTCCEEEC--TTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred             CCEEECcCCccCcCCHHHhhCCCcCCEEEC--CCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence            444555566666666556777777888888  7777765443  7777778888888777763 22    3367788888


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhh-hCCCCCCEEECCCCcCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGEL-TELSRPDCLSLSANKLSG  215 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~  215 (325)
                      ++|++++..+.   .+++|++|++++|           .+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus       107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            88887754333   3577888888887           34678889999999887767666 468889999999999885


Q ss_pred             CCCCcccCCCCCcEEEccCCCCCch
Q 045233          216 PVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       216 ~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      . +. ...+++|+.|++++|.+...
T Consensus       184 ~-~~-~~~l~~L~~L~Ls~N~l~~l  206 (317)
T 3o53_A          184 V-KG-QVVFAKLKTLDLSSNKLAFM  206 (317)
T ss_dssp             E-EC-CCCCTTCCEEECCSSCCCEE
T ss_pred             c-cc-ccccccCCEEECCCCcCCcc
Confidence            5 32 23588899999999988753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=5.2e-17  Score=138.50  Aligned_cols=157  Identities=20%  Similarity=0.229  Sum_probs=130.0

Q ss_pred             CCCCCccceeeEeCCCC--Ce---eEeeccccccCCccccccC-ccccCCCCCCCEEEeccccCcCCCCCcccccCCCcC
Q 045233           45 YSSDHCKWIGITCNSAG--SI---IGLNLSWYDVDLNAQAQLS-QLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKL  118 (325)
Q Consensus        45 ~~~~~C~w~gv~c~~~~--~v---~~l~l~~l~~~~n~~~~l~-~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L  118 (325)
                      ++.+.|.|..+.|+...  .+   ..-.++.++++.|.+..+. ...|..+++|+.|++  ++|.+.+..+..|..+++|
T Consensus         6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L--~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A            6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINF--SNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEEC--CSSCCCEECTTTTTTCTTC
T ss_pred             CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEEC--CCCcCCEECHHHhCCCCCC
Confidence            44567899999996532  11   1113456777888888774 345889999999999  9999998888899999999


Q ss_pred             CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhh
Q 045233          119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELT  198 (325)
Q Consensus       119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~  198 (325)
                      ++|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|             ++|+|++|++++..|..|.
T Consensus        84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV-------------RLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC-------------SEEECTTSCCCCBCTTTTT
T ss_pred             CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC-------------CEEECCCCcCCEECHHHhc
Confidence            999999999998888889999999999999999998888888776655             4557778888888899999


Q ss_pred             CCCCCCEEECCCCcCCCC
Q 045233          199 ELSRPDCLSLSANKLSGP  216 (325)
Q Consensus       199 ~l~~L~~L~L~~N~l~~~  216 (325)
                      .+++|+.|++++|+++..
T Consensus       151 ~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          151 TLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TCTTCCEEECCSCCEECS
T ss_pred             CCCCCCEEEecCcCCcCC
Confidence            999999999999999854

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=1.1e-17  Score=159.21  Aligned_cols=159  Identities=23%  Similarity=0.203  Sum_probs=129.7

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      +..++++.|.+..+....+..+++|++|++  ++|.+.+..|  +..+++|++|++++|.+++ +|    ..++|++|++
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L  106 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNL--SSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA  106 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEEC--TTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEe--eCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEEC
Confidence            444555667777777777889999999999  8888887655  8889999999999998884 33    2388999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhh-CCCCCCEEECCCCcCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELT-ELSRPDCLSLSANKLSG  215 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~  215 (325)
                      ++|.+++..+.   .+++|+.|++++|           .+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            99999865543   4678999999988           357899999999999988888876 79999999999999996


Q ss_pred             CCCCcccCCCCCcEEEccCCCCCch
Q 045233          216 PVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       216 ~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      ..+  ...+++|+.|++++|.+.+.
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCEE
T ss_pred             ccc--cccCCCCCEEECCCCCCCCC
Confidence            633  34689999999999999864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=2e-17  Score=151.57  Aligned_cols=168  Identities=22%  Similarity=0.204  Sum_probs=144.0

Q ss_pred             CCCCCccceeeEeCCCC-----CeeEeeccccccCCccccccCccccC-CCCCCCEEEeccccCcCCCCCcccccCCCcC
Q 045233           45 YSSDHCKWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFS-CFPNLESLRIQAYYYGFTGSIPSDISALSKL  118 (325)
Q Consensus        45 ~~~~~C~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~-~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L  118 (325)
                      +..+.|.+..+.|...+     .-..-.++.++++.|.+..++...+. .+++|+.|++  ++|.+.+..+..|..+++|
T Consensus        13 p~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L--~~N~i~~i~~~~~~~l~~L   90 (361)
T 2xot_A           13 PANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL--SHNHLNFISSEAFVPVPNL   90 (361)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEEC--CSSCCCEECTTTTTTCTTC
T ss_pred             CCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEEC--CCCcCCccChhhccCCCCC
Confidence            44566888899996531     11112356678888998888887787 9999999999  9999998888889999999


Q ss_pred             CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCC--------------CCCCcEEEc
Q 045233          119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS--------------MKNLTWLDI  184 (325)
Q Consensus       119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~--------------l~~L~~L~L  184 (325)
                      ++|+|++|.++...+..|.++++|++|+|++|++++..|..|..+++|+.|++++|.              +++|+.|+|
T Consensus        91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred             CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence            999999999997777789999999999999999998888999999999999999982              678999999


Q ss_pred             cCCcCCCCCchhhhCCCC--CCEEECCCCcCC
Q 045233          185 SNNKIEGSIPGELTELSR--PDCLSLSANKLS  214 (325)
Q Consensus       185 s~n~l~~~~p~~~~~l~~--L~~L~L~~N~l~  214 (325)
                      ++|++++..+..+..++.  ++.|+|++|++.
T Consensus       171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            999999777788888887  488999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.70  E-value=9.2e-17  Score=152.03  Aligned_cols=156  Identities=26%  Similarity=0.354  Sum_probs=99.5

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      ++++.|.+..+..  +..+++|+.|++  ++|.+.+.  +.+..+++|++|++++|.+++..+  +..+++|++|++++|
T Consensus       204 L~l~~n~l~~~~~--~~~l~~L~~L~l--~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  275 (466)
T 1o6v_A          204 LIATNNQISDITP--LGILTNLDELSL--NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN  275 (466)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEEC--CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             EEecCCccccccc--ccccCCCCEEEC--CCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC
Confidence            4444454444332  556777777777  66666543  346667777777777777764433  666777777777777


Q ss_pred             cCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233          151 NLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN  221 (325)
Q Consensus       151 ~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  221 (325)
                      ++++. |. +..+++|+.|++++|         .+++|+.|++++|++++..|  +..+++|+.|++++|++++.  ..+
T Consensus       276 ~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l  349 (466)
T 1o6v_A          276 QISNI-SP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSL  349 (466)
T ss_dssp             CCCCC-GG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             ccCcc-cc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhh
Confidence            77643 33 666777777777766         34567777777777765544  56667777777777776654  345


Q ss_pred             cCCCCCcEEEccCCCCCch
Q 045233          222 KQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       222 ~~l~~L~~L~l~~N~~~~~  240 (325)
                      ..+++|+.|++++|++.+.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          350 ANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             TTCTTCCEEECCSSCCCBC
T ss_pred             ccCCCCCEEeCCCCccCcc
Confidence            6666777777777766554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=9.7e-17  Score=133.87  Aligned_cols=138  Identities=20%  Similarity=0.300  Sum_probs=110.5

Q ss_pred             CCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcc-cccCCCcCCEEecc
Q 045233           46 SSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPS-DISALSKLQLLDLS  124 (325)
Q Consensus        46 ~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~-~l~~l~~L~~L~Ls  124 (325)
                      ..+.|.|..+.|..                +.+..++..   -.++|++|++  ++|.+.+..+. .+..+++|++|+++
T Consensus         4 ~~C~C~~~~l~~s~----------------~~l~~ip~~---~~~~l~~L~l--~~n~i~~~~~~~~~~~l~~L~~L~Ls   62 (192)
T 1w8a_A            4 AMCHCEGTTVDCTG----------------RGLKEIPRD---IPLHTTELLL--NDNELGRISSDGLFGRLPHLVKLELK   62 (192)
T ss_dssp             TTSEEETTEEECTT----------------SCCSSCCSC---CCTTCSEEEC--CSCCCCSBCCSCSGGGCTTCCEEECC
T ss_pred             CCCEECCCEEEcCC----------------CCcCcCccC---CCCCCCEEEC--CCCcCCccCCccccccCCCCCEEECC
Confidence            44567887776643                233333331   1348999999  89999877664 48899999999999


Q ss_pred             cCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCC
Q 045233          125 LNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPD  204 (325)
Q Consensus       125 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  204 (325)
                      +|.+++..|..|.++++|++|+|++|++++..|..|..+++|             ++|++++|++++..|..+..+++|+
T Consensus        63 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           63 RNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL-------------KTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             SSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC-------------CEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             CCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCC-------------CEEECCCCcCCeeCHHHhhcCCCCC
Confidence            999998889999999999999999999998777777766554             5567788888888899999999999


Q ss_pred             EEECCCCcCCCCC
Q 045233          205 CLSLSANKLSGPV  217 (325)
Q Consensus       205 ~L~L~~N~l~~~~  217 (325)
                      .|++++|++++..
T Consensus       130 ~L~L~~N~l~c~c  142 (192)
T 1w8a_A          130 SLNLASNPFNCNC  142 (192)
T ss_dssp             EEECTTCCBCCSG
T ss_pred             EEEeCCCCccCcC
Confidence            9999999998653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=2.1e-16  Score=152.69  Aligned_cols=174  Identities=23%  Similarity=0.262  Sum_probs=120.8

Q ss_pred             CCCCc-----cceee-EeCCCCCeeEeecc----------------ccccCCccccccCccccCCCCCCCEEEeccccCc
Q 045233           46 SSDHC-----KWIGI-TCNSAGSIIGLNLS----------------WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYG  103 (325)
Q Consensus        46 ~~~~C-----~w~gv-~c~~~~~v~~l~l~----------------~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~  103 (325)
                      ..++|     .|.++ .|.. .+++.++++                .++++.|.+..++    ..+++|+.|++  ++|.
T Consensus        39 ~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~L--s~N~  111 (571)
T 3cvr_A           39 QALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP----ELPASLEYLDA--CDNR  111 (571)
T ss_dssp             TCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC----CCCTTCCEEEC--CSSC
T ss_pred             cCCccccccchhhhcccccc-CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc----cccCCCCEEEc--cCCC
Confidence            45667     68888 5632 234444443                3444445444443    34677777777  6777


Q ss_pred             CCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC-------
Q 045233          104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM-------  176 (325)
Q Consensus       104 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l-------  176 (325)
                      +++ +|. +.+  +|++|++++|.+++ +|.   .+++|++|+|++|++++ +|.   .+++|+.|++++|.+       
T Consensus       112 l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~  179 (571)
T 3cvr_A          112 LST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELP  179 (571)
T ss_dssp             CSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCC
T ss_pred             CCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhh
Confidence            766 555 544  77777777777775 555   56778888888888874 555   567888888888854       


Q ss_pred             CCCcEEEccCCcCCCCCchhhhCCCCC-------CEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHHH
Q 045233          177 KNLTWLDISNNKIEGSIPGELTELSRP-------DCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFI  243 (325)
Q Consensus       177 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~~  243 (325)
                      ++|+.|+|++|+++ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|++++|++++....
T Consensus       180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            36888888888888 5665 544  66       99999999999 5788888899999999999999875443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.9e-16  Score=140.77  Aligned_cols=143  Identities=27%  Similarity=0.316  Sum_probs=125.7

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +..+++|+.|++  ++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|++++ +| .+..+++
T Consensus        42 ~~~l~~L~~L~l--~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIA--NNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEEC--TTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTT
T ss_pred             hhhcCcccEEEc--cCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCC
Confidence            556889999999  88888754 3 488899999999999999954 44 8999999999999999985 44 4999999


Q ss_pred             CcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233          166 LKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       166 L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~  236 (325)
                      |++|++++|         .+++|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|.
T Consensus       114 L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            999999999         467899999999999965  578999999999999999997655  8999999999999999


Q ss_pred             CCch
Q 045233          237 GLGS  240 (325)
Q Consensus       237 ~~~~  240 (325)
                      +...
T Consensus       190 i~~l  193 (291)
T 1h6t_A          190 ISDL  193 (291)
T ss_dssp             CCBC
T ss_pred             CCCC
Confidence            8864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.70  E-value=2.7e-16  Score=148.81  Aligned_cols=155  Identities=30%  Similarity=0.411  Sum_probs=86.2

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      ++++.|.+..++  .+..+++|++|++  ++|.+.+..|  +..+++|++|++++|.+++ + +.+..+++|++|++++|
T Consensus       182 L~l~~n~l~~~~--~l~~l~~L~~L~l--~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          182 LDISSNKVSDIS--VLAKLTNLESLIA--TNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANN  253 (466)
T ss_dssp             EECCSSCCCCCG--GGGGCTTCSEEEC--CSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred             EECcCCcCCCCh--hhccCCCCCEEEe--cCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCC
Confidence            344444444332  2455566666666  5555554433  4555666666666666653 2 23555666666666666


Q ss_pred             cCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233          151 NLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN  221 (325)
Q Consensus       151 ~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  221 (325)
                      .+++..|  +..+++|+.|++++|         .+++|+.|++++|++++..|  +..+++|+.|++++|++++..|  +
T Consensus       254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~  327 (466)
T 1o6v_A          254 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V  327 (466)
T ss_dssp             CCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G
T ss_pred             ccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h
Confidence            6653322  556666666666655         33456666666666654332  5556666666666666665443  4


Q ss_pred             cCCCCCcEEEccCCCCCc
Q 045233          222 KQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       222 ~~l~~L~~L~l~~N~~~~  239 (325)
                      ..+++|+.|++++|++.+
T Consensus       328 ~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             GGCTTCCEEECCSSCCCC
T ss_pred             ccCccCCEeECCCCccCC
Confidence            556666666666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=1e-16  Score=154.87  Aligned_cols=148  Identities=26%  Similarity=0.356  Sum_probs=123.8

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      ++..++++.|.+..++...   +++|++|++  ++|.+. .+|   ..+++|++|++++|.+++ +|. +.+  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~L--s~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEI--TQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEEC--CSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEEC--cCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            6778999999888776532   488999999  899888 566   457999999999999996 777 665  999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcCCC-------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVTSM-------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPF  219 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l-------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  219 (325)
                      |++|++++ +|.   .+++|+.|++++|.+       ++|++|++++|++++ +|. +.  ++|+.|+|++|+|+ .+|.
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh
Confidence            99999996 776   689999999999954       589999999999996 666 55  89999999999999 5666


Q ss_pred             cccCCCCC-------cEEEccCCCCCc
Q 045233          220 SNKQLSTM-------YIVRLSPNKGLG  239 (325)
Q Consensus       220 ~~~~l~~L-------~~L~l~~N~~~~  239 (325)
                       +..  +|       +.|++++|.+..
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~~  221 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRITH  221 (571)
T ss_dssp             -CC----------CCEEEECCSSCCCC
T ss_pred             -HHH--hhhcccccceEEecCCCccee
Confidence             554  77       999999999875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=3.5e-16  Score=128.57  Aligned_cols=113  Identities=23%  Similarity=0.235  Sum_probs=71.4

Q ss_pred             cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchh
Q 045233          117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGE  196 (325)
Q Consensus       117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~  196 (325)
                      +|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|             ++|++++|++++..+..
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~l~~N~l~~~~~~~   95 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL-------------TILYLHENKLQSLPNGV   95 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------------CEEECCSSCCCCCCTTT
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc-------------CEEECCCCCccccCHHH
Confidence            45555555555554444445555666666666666654333334444333             33445555555555556


Q ss_pred             hhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          197 LTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       197 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      +..+++|+.|++++|++++..+..+..+++|+.|++++|++.|...
T Consensus        96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            6777888888888888886666667788888889999998888654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=5.9e-16  Score=146.19  Aligned_cols=152  Identities=25%  Similarity=0.232  Sum_probs=122.8

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.++++.|.+..+   +++.+++|++|++  ++|.+.+. |  +.++++|++|++++|.+++ +|  ++.+++|++|++
T Consensus        66 L~~L~Ls~n~l~~~---~~~~l~~L~~L~L--s~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           66 LTKLICTSNNITTL---DLSQNTNLTYLAC--DSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC  134 (457)
T ss_dssp             CSEEECCSSCCSCC---CCTTCTTCSEEEC--CSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCEEEccCCcCCeE---ccccCCCCCEEEC--cCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence            34455556655554   3778888888888  78887764 3  7888888888888888885 44  788888899999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP  218 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  218 (325)
                      ++|++++ ++  ++.+++|++|++++|         .+++|++|++++|++++ +|  +..+++|+.|++++|++++.  
T Consensus       135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--  206 (457)
T 3bz5_A          135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--  206 (457)
T ss_dssp             TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--
T ss_pred             CCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--
Confidence            9988886 33  778888999998888         56789999999999996 45  78899999999999999965  


Q ss_pred             CcccCCCCCcEEEccCCCCCc
Q 045233          219 FSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       219 ~~~~~l~~L~~L~l~~N~~~~  239 (325)
                       .++.+++|+.|++++|++.+
T Consensus       207 -~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          207 -DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             -CCTTCTTCSEEECCSSCCSC
T ss_pred             -ccccCCCCCEEECcCCcccc
Confidence             37889999999999999887

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=3e-16  Score=134.54  Aligned_cols=134  Identities=25%  Similarity=0.255  Sum_probs=113.6

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      +++.++++.|.+..+....+..+++|++|++  ++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYL--GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEEC--CCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            4555666778888887778999999999999  89999877677789999999999999999977777789999999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP  216 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  216 (325)
                      |++|+++ .+|..+..+++|             ++|++++|++++..+..+..+++|+.|++++|+++..
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L-------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHL-------------THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTC-------------SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             ccCCccc-ccCcccccCCCC-------------CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            9999999 788877766655             4557777888866667889999999999999998854

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=3.6e-16  Score=130.57  Aligned_cols=126  Identities=22%  Similarity=0.271  Sum_probs=97.7

Q ss_pred             ccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCC
Q 045233          100 YYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNL  179 (325)
Q Consensus       100 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L  179 (325)
                      +++.+. .+|..+.  ++|++|++++|.++ .+|..|.++++|++|+|++|++++..+..|..+++|+            
T Consensus        18 ~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~------------   81 (193)
T 2wfh_A           18 SNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL------------   81 (193)
T ss_dssp             TTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC------------
T ss_pred             CCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC------------
Confidence            444444 3343332  57888888888887 6778888888888888888888866666777665554            


Q ss_pred             cEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          180 TWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       180 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                       +|+|++|++++..|..|.++++|+.|+|++|+++...+..+..+++|+.|++++|++.|...
T Consensus        82 -~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           82 -TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             -EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             -EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence             45667777777777788999999999999999997777778999999999999999987654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=1.2e-16  Score=130.23  Aligned_cols=134  Identities=21%  Similarity=0.201  Sum_probs=105.0

Q ss_pred             CCCCCCEEEeccccCcCC-CCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233           88 CFPNLESLRIQAYYYGFT-GSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL  166 (325)
Q Consensus        88 ~l~~L~~L~l~~~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  166 (325)
                      ..++|+.|++  ++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|
T Consensus        22 ~~~~L~~L~l--~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           22 TPAAVRELVL--DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             CTTSCSEEEC--CSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CcccCCEEEC--CCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            3578899999  888887 67788888899999999999998855  678889999999999999987677776666655


Q ss_pred             cEEEcCcCCCCCCcEEEccCCcCCCCC-chhhhCCCCCCEEECCCCcCCCCCC---CcccCCCCCcEEEccCCCCC
Q 045233          167 KYLDLKVTSMKNLTWLDISNNKIEGSI-PGELTELSRPDCLSLSANKLSGPVP---FSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       167 ~~L~l~~n~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~l~~N~~~  238 (325)
                      ++             |++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|+.|++++|...
T Consensus        98 ~~-------------L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           98 TH-------------LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CE-------------EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CE-------------EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            54             456666666432 2678888888999999988886554   46788888888888888754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=1.3e-17  Score=150.70  Aligned_cols=147  Identities=22%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             CCCCCCCEEEeccccCcCCCC-CcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC-cCCCc-CchhccCC
Q 045233           87 SCFPNLESLRIQAYYYGFTGS-IPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN-NLTGP-IPSTLARL  163 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l  163 (325)
                      ..+++|++|++  ++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+
T Consensus        90 ~~~~~L~~L~L--~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           90 FSPFRVQHMDL--SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             CCCBCCCEEEC--TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             ccCCCCCEEEc--cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            34555666666  55555443 4445555556666666666555555555555555666666555 44431 34445555


Q ss_pred             CCCcEEEcCcC-C------------CC-CCcEEEccCC--cCC-CCCchhhhCCCCCCEEECCCCc-CCCCCCCcccCCC
Q 045233          164 TNLKYLDLKVT-S------------MK-NLTWLDISNN--KIE-GSIPGELTELSRPDCLSLSANK-LSGPVPFSNKQLS  225 (325)
Q Consensus       164 ~~L~~L~l~~n-~------------l~-~L~~L~Ls~n--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~  225 (325)
                      ++|++|++++| .            ++ +|++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+..+..++
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence            55555555555 2            23 5555555555  333 2344444555555555555555 4444444455555


Q ss_pred             CCcEEEccCC
Q 045233          226 TMYIVRLSPN  235 (325)
Q Consensus       226 ~L~~L~l~~N  235 (325)
                      +|+.|++++|
T Consensus       248 ~L~~L~l~~~  257 (336)
T 2ast_B          248 YLQHLSLSRC  257 (336)
T ss_dssp             TCCEEECTTC
T ss_pred             CCCEeeCCCC
Confidence            5555555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=9.9e-16  Score=144.65  Aligned_cols=154  Identities=22%  Similarity=0.205  Sum_probs=128.6

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.++++.|.+..+   +++.+++|++|++  ++|.+.+. |  +..+++|++|++++|.+++. +  ++.+++|++|++
T Consensus        87 L~~L~Ls~N~l~~~---~~~~l~~L~~L~L--~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l  155 (457)
T 3bz5_A           87 LTYLACDSNKLTNL---DVTPLTKLTYLNC--DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDC  155 (457)
T ss_dssp             CSEEECCSSCCSCC---CCTTCTTCCEEEC--CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEEC
T ss_pred             CCEEECcCCCCcee---ecCCCCcCCEEEC--CCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEEC
Confidence            34456666766655   4888999999999  88888874 4  88999999999999999963 3  788999999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC--------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT--------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPF  219 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n--------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  219 (325)
                      ++|+..+.+  .+..+++|+.|++++|        .+++|+.|++++|++++.   .+..+++|+.|++++|++++ +| 
T Consensus       156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-  228 (457)
T 3bz5_A          156 HLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-  228 (457)
T ss_dssp             TTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-
T ss_pred             CCCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-
Confidence            999666566  4788999999999988        456899999999999965   37889999999999999997 55 


Q ss_pred             cccCCCCCcEEEccCCCCCch
Q 045233          220 SNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       220 ~~~~l~~L~~L~l~~N~~~~~  240 (325)
                       ++.+++|+.|++++|++.+.
T Consensus       229 -~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          229 -VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             -CTTCTTCSEEECCSSCCSCC
T ss_pred             -ccccCCCCEEEeeCCcCCCc
Confidence             78899999999999998764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=7.8e-17  Score=128.60  Aligned_cols=130  Identities=19%  Similarity=0.213  Sum_probs=107.8

Q ss_pred             CCCCCCEEEeccccCcCC-CCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233           88 CFPNLESLRIQAYYYGFT-GSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL  166 (325)
Q Consensus        88 ~l~~L~~L~l~~~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  166 (325)
                      ..++|+.|++  ++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|
T Consensus        15 ~~~~l~~L~l--~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVL--DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEEC--TTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CCccCeEEEc--cCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            3578999999  889888 78888889999999999999999865  778999999999999999997788877666665


Q ss_pred             cEEEcCcCCCCCCcEEEccCCcCCCC-CchhhhCCCCCCEEECCCCcCCCCCC---CcccCCCCCcEEEccC
Q 045233          167 KYLDLKVTSMKNLTWLDISNNKIEGS-IPGELTELSRPDCLSLSANKLSGPVP---FSNKQLSTMYIVRLSP  234 (325)
Q Consensus       167 ~~L~l~~n~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~l~~  234 (325)
                      ++             |++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|++++
T Consensus        91 ~~-------------L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           91 TH-------------LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CE-------------EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CE-------------EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            55             56666777753 34788999999999999999997665   4788899999998763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.66  E-value=1.6e-17  Score=153.32  Aligned_cols=152  Identities=21%  Similarity=0.185  Sum_probs=80.2

Q ss_pred             CCCCCCCEEEeccccCcCCC----CCcccccCCCcCCEEecccCCCCCCCchhh----cCC---------cccceeeccc
Q 045233           87 SCFPNLESLRIQAYYYGFTG----SIPSDISALSKLQLLDLSLNRLSGTIPSNI----GNL---------RNLVHLDLGN  149 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l---------~~L~~L~Ls~  149 (325)
                      ..+++|++|++  ++|.+.+    .+|..+..+++|++|++++|.++...+..+    ..+         ++|++|++++
T Consensus        91 ~~~~~L~~L~L--s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           91 LKCPKLHTVRL--SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             TTCTTCCEEEC--CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             hhCCcccEEEC--CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence            44555555555  5555544    244445555555555555555542222222    222         5555556665


Q ss_pred             CcCC-CcCc---hhccCCCCCcEEEcCcCC----------------CCCCcEEEccCCcCC----CCCchhhhCCCCCCE
Q 045233          150 NNLT-GPIP---STLARLTNLKYLDLKVTS----------------MKNLTWLDISNNKIE----GSIPGELTELSRPDC  205 (325)
Q Consensus       150 N~l~-~~~p---~~~~~l~~L~~L~l~~n~----------------l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~  205 (325)
                      |+++ +.+|   ..+..+++|+.|++++|.                +++|++|+|++|.++    ..+|..+..+++|+.
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            5555 2233   244455566666665552                345666666666664    345555666666666


Q ss_pred             EECCCCcCCCC----CCCcc--cCCCCCcEEEccCCCCCch
Q 045233          206 LSLSANKLSGP----VPFSN--KQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       206 L~L~~N~l~~~----~p~~~--~~l~~L~~L~l~~N~~~~~  240 (325)
                      |+|++|.+++.    +|..+  +.+++|+.|++++|.+...
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~  289 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  289 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence            66666666543    33334  2256666666666666543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=2.4e-17  Score=148.99  Aligned_cols=169  Identities=18%  Similarity=0.161  Sum_probs=137.2

Q ss_pred             ccccccCCcccccc-CccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC-CCCC-CCchhhcCCcccce
Q 045233           68 LSWYDVDLNAQAQL-SQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN-RLSG-TIPSNIGNLRNLVH  144 (325)
Q Consensus        68 l~~l~~~~n~~~~l-~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~-~~p~~~~~l~~L~~  144 (325)
                      |+.++++.+.+... -...+..+++|++|++  ++|.+.+..+..+..+++|++|++++| .+++ .++..+.++++|++
T Consensus        95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L--~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSL--EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEEC--TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCEEEccCCCcCHHHHHHHHhhCCCCCEEeC--cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            33445555554321 1123778999999999  889888888888999999999999999 6775 36777889999999


Q ss_pred             eecccC-cCCCc-CchhccCCC-CCcEEEcCcC--------------CCCCCcEEEccCCc-CCCCCchhhhCCCCCCEE
Q 045233          145 LDLGNN-NLTGP-IPSTLARLT-NLKYLDLKVT--------------SMKNLTWLDISNNK-IEGSIPGELTELSRPDCL  206 (325)
Q Consensus       145 L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~l~~n--------------~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L  206 (325)
                      |++++| .+++. ++..+..++ +|++|++++|              .+++|++|++++|. +++..+..+..+++|+.|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            999999 99854 577788999 9999999988              45799999999999 787888899999999999


Q ss_pred             ECCCCc-CCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233          207 SLSANK-LSGPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       207 ~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      ++++|. ++......++.+++|+.|++++| +..
T Consensus       253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence            999995 33222235788999999999999 443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=2.6e-17  Score=150.78  Aligned_cols=169  Identities=21%  Similarity=0.266  Sum_probs=110.5

Q ss_pred             ccCCccccccCc----cccCCCC-CCCEEEeccccCcCCCCCcccccCC-----CcCCEEecccCCCCCCCchhhc----
Q 045233           72 DVDLNAQAQLSQ----LNFSCFP-NLESLRIQAYYYGFTGSIPSDISAL-----SKLQLLDLSLNRLSGTIPSNIG----  137 (325)
Q Consensus        72 ~~~~n~~~~l~~----~~~~~l~-~L~~L~l~~~~n~~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~~~----  137 (325)
                      +++.|.+...+.    ..+..++ +|++|++  ++|.+.+..+..+..+     ++|++|++++|.+++..+..+.    
T Consensus        28 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L--s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~  105 (362)
T 3goz_A           28 DLSLNNLYSISTVELIQAFANTPASVTSLNL--SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA  105 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTCCTTCCEEEC--CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             EccCCCCChHHHHHHHHHHHhCCCceeEEEC--cCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence            334444444443    3456677 7888888  7777777666666554     7788888888888765555433    


Q ss_pred             CC-cccceeecccCcCCCcCchhc----cC-CCCCcEEEcCcCCC----------------CCCcEEEccCCcCCCCCch
Q 045233          138 NL-RNLVHLDLGNNNLTGPIPSTL----AR-LTNLKYLDLKVTSM----------------KNLTWLDISNNKIEGSIPG  195 (325)
Q Consensus       138 ~l-~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~l~~n~l----------------~~L~~L~Ls~n~l~~~~p~  195 (325)
                      .+ ++|++|++++|++++..+..+    .. .++|++|++++|.+                ++|++|++++|++++..+.
T Consensus       106 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~  185 (362)
T 3goz_A          106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA  185 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred             hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH
Confidence            33 678888888888876555443    33 25788888887732                2788888888888766654


Q ss_pred             hhh----CC-CCCCEEECCCCcCCCC----CCCcccC-CCCCcEEEccCCCCCchHH
Q 045233          196 ELT----EL-SRPDCLSLSANKLSGP----VPFSNKQ-LSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       196 ~~~----~l-~~L~~L~L~~N~l~~~----~p~~~~~-l~~L~~L~l~~N~~~~~~~  242 (325)
                      .+.    .. ++|+.|+|++|.+++.    ++..+.. .++|+.|++++|.+.....
T Consensus       186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            433    34 4788888888887753    3334444 3478888888887765433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=6.4e-15  Score=120.92  Aligned_cols=138  Identities=19%  Similarity=0.221  Sum_probs=109.0

Q ss_pred             CCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC
Q 045233           47 SDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN  126 (325)
Q Consensus        47 ~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n  126 (325)
                      .+.|.|.++.|                +.+.+..++   ....++|+.|++  ++|.+.+..+..+..+++|++|++++|
T Consensus         4 ~C~C~~~~l~~----------------~~~~l~~~p---~~~~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n   62 (177)
T 2o6r_A            4 RCSCSGTEIRC----------------NSKGLTSVP---TGIPSSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSQN   62 (177)
T ss_dssp             TCEEETTEEEC----------------CSSCCSSCC---TTCCTTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             CCEeCCCEEEe----------------cCCCCccCC---CCCCCCCcEEEe--CCCcccEeCHHHhcCcccccEEECCCC
Confidence            45577777666                344444443   334579999999  899998877777899999999999999


Q ss_pred             CCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEE
Q 045233          127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCL  206 (325)
Q Consensus       127 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  206 (325)
                      .+++..+..|..+++|++|++++|++++..+..+..+++|             ++|++++|++++..+..+..+++|+.|
T Consensus        63 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-------------~~L~l~~N~l~~~~~~~~~~l~~L~~L  129 (177)
T 2o6r_A           63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL-------------KELALDTNQLKSVPDGIFDRLTSLQKI  129 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------CEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc-------------CEEECcCCcceEeCHHHhcCCcccCEE
Confidence            9997766778999999999999999996666666666555             555777788886666677889999999


Q ss_pred             ECCCCcCCCCCC
Q 045233          207 SLSANKLSGPVP  218 (325)
Q Consensus       207 ~L~~N~l~~~~p  218 (325)
                      ++++|++++..|
T Consensus       130 ~l~~N~~~~~~~  141 (177)
T 2o6r_A          130 WLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCBCCCHH
T ss_pred             EecCCCeeccCc
Confidence            999999986543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=1.2e-15  Score=148.69  Aligned_cols=143  Identities=28%  Similarity=0.328  Sum_probs=126.6

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +..+++|+.|++  ++|.+... | .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++ +| .+..+++
T Consensus        39 ~~~L~~L~~L~l--~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIA--NNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKK  110 (605)
T ss_dssp             HHHHTTCCCCBC--TTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTT
T ss_pred             hhcCCCCCEEEC--cCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCC
Confidence            567889999999  88887654 3 58899999999999999996544  8999999999999999984 44 6899999


Q ss_pred             CcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233          166 LKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       166 L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~  236 (325)
                      |+.|++++|         .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.
T Consensus       111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            999999999         568899999999999965  678999999999999999997766  8999999999999999


Q ss_pred             CCch
Q 045233          237 GLGS  240 (325)
Q Consensus       237 ~~~~  240 (325)
                      +...
T Consensus       187 i~~l  190 (605)
T 1m9s_A          187 ISDL  190 (605)
T ss_dssp             CCBC
T ss_pred             CCCC
Confidence            9864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.9e-15  Score=126.15  Aligned_cols=111  Identities=30%  Similarity=0.382  Sum_probs=96.0

Q ss_pred             CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcE
Q 045233           89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKY  168 (325)
Q Consensus        89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  168 (325)
                      .++|++|++  ++|.+. .+|..+..+++|++|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++
T Consensus        30 ~~~l~~L~L--~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           30 PRDVTELYL--DGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL  106 (193)
T ss_dssp             CTTCCEEEC--CSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             CCCCCEEEC--CCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence            368999999  888887 67789999999999999999999888888999999999999999999777777877666554


Q ss_pred             EEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          169 LDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       169 L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                                   |+|++|.++...+..|..+++|+.|++++|++..
T Consensus       107 -------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          107 -------------LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             -------------EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             -------------EECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence                         5677788886666778999999999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.64  E-value=3.8e-17  Score=150.82  Aligned_cols=155  Identities=19%  Similarity=0.214  Sum_probs=97.9

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCccc----ccCC---------CcCCEEecccCCCC-CCCc---hhhcCCcccceeecc
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSD----ISAL---------SKLQLLDLSLNRLS-GTIP---SNIGNLRNLVHLDLG  148 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~----l~~l---------~~L~~L~Ls~n~l~-~~~p---~~~~~l~~L~~L~Ls  148 (325)
                      +..+++|++|++  ++|.+....+..    +..+         ++|++|++++|+++ ..++   ..+..+++|++|+++
T Consensus       118 l~~~~~L~~L~L--~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~  195 (386)
T 2ca6_A          118 LSKHTPLEHLYL--HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV  195 (386)
T ss_dssp             HHHCTTCCEEEC--CSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred             HHhCCCCCEEEC--cCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence            455677777777  666665332222    2223         67777777777776 3333   355566777777777


Q ss_pred             cCcCCC-----cCchhccCCCCCcEEEcCcCC---------------CCCCcEEEccCCcCCCC----CchhhhC--CCC
Q 045233          149 NNNLTG-----PIPSTLARLTNLKYLDLKVTS---------------MKNLTWLDISNNKIEGS----IPGELTE--LSR  202 (325)
Q Consensus       149 ~N~l~~-----~~p~~~~~l~~L~~L~l~~n~---------------l~~L~~L~Ls~n~l~~~----~p~~~~~--l~~  202 (325)
                      +|+++.     ..|..+..+++|+.|++++|.               +++|++|+|++|.+++.    +|..+..  +++
T Consensus       196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~  275 (386)
T 2ca6_A          196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  275 (386)
T ss_dssp             SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence            777762     233366677777777777763               35677777777777654    4455533  677


Q ss_pred             CCEEECCCCcCCC----CCCCcc-cCCCCCcEEEccCCCCCchHH
Q 045233          203 PDCLSLSANKLSG----PVPFSN-KQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       203 L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      |+.|+|++|.+++    .+|..+ .++++|+.|++++|++.+...
T Consensus       276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            7777777777775    355555 456777777777777765543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=9.5e-16  Score=152.59  Aligned_cols=181  Identities=19%  Similarity=0.133  Sum_probs=93.0

Q ss_pred             CCCCCCCCCCCCCCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCE-----EEeccccCcCCCCC
Q 045233           34 GWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES-----LRIQAYYYGFTGSI  108 (325)
Q Consensus        34 ~~~~~~~W~~~~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~-----L~l~~~~n~~~~~~  108 (325)
                      +|+....|. ......+.|.++.++. ++++.+++....+..     .+.. +....+|+.     +++  ..|.+. ..
T Consensus       148 ~~~~~~~~~-~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~-----~~~~-~l~~l~Ls~~~i~~~~~--~~n~~~-~~  216 (727)
T 4b8c_D          148 KTAKKQQPT-GDSTPSGTATNSAVST-PLTPKIELFANGKDE-----ANQA-LLQHKKLSQYSIDEDDD--IENRMV-MP  216 (727)
T ss_dssp             HTTC----------------------------------------------------------------------------
T ss_pred             cCcccCCCc-CCCCccccCCCceecC-CccceEEeeCCCCCc-----chhh-HhhcCccCcccccCccc--ccccee-cC
Confidence            455566663 2334566888877755 567777665433222     2111 111122222     222  233333 45


Q ss_pred             cccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCc
Q 045233          109 PSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNK  188 (325)
Q Consensus       109 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~  188 (325)
                      |..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++             |+|++|.
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~-------------L~Ls~N~  281 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV-------------LDLSHNR  281 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE-------------EECTTSC
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE-------------EeCcCCc
Confidence            677888999999999999998 77877888999999999999998 78888877666555             4666677


Q ss_pred             CCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          189 IEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       189 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      |+ .+|..++.+++|++|+|++|.|+ .+|..++.+++|+.|+|++|++.+...
T Consensus       282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence            77 66777888888888888888887 667778888888888888888876543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=1.3e-15  Score=133.47  Aligned_cols=136  Identities=27%  Similarity=0.410  Sum_probs=114.9

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      ++.++++.+.+..++  .+..+++|+.|++  ++|.+.+..+  +..+++|++|++++|++++ +|. +.. ++|++|++
T Consensus        43 L~~L~l~~n~i~~l~--~l~~l~~L~~L~L--~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L  113 (263)
T 1xeu_A           43 VQNFNGDNSNIQSLA--GMQFFTNLKELHL--SHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFL  113 (263)
T ss_dssp             CSEEECTTSCCCCCT--TGGGCTTCCEEEC--CSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEEC
T ss_pred             CcEEECcCCCcccch--HHhhCCCCCEEEC--CCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEc
Confidence            334555566666666  5788999999999  8999887654  9999999999999999995 444 333 89999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP  216 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  216 (325)
                      ++|++++ ++ .+..+++|+.|++++|         .+++|++|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cCCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999995 44 5999999999999999         567899999999999976  6789999999999999999865

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=1.6e-16  Score=145.44  Aligned_cols=169  Identities=18%  Similarity=0.152  Sum_probs=132.1

Q ss_pred             cCCccccccCccccCCCCCCCEEEeccccCcCCCCCc----ccccCCC-cCCEEecccCCCCCCCchhhcCC-----ccc
Q 045233           73 VDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP----SDISALS-KLQLLDLSLNRLSGTIPSNIGNL-----RNL  142 (325)
Q Consensus        73 ~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L  142 (325)
                      ++.+.+....+..+...++|++|++  ++|.+.+..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~L--s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDL--SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEEC--TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccchHHHHHHHhCCCCceEEEc--cCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3344444333333455566999999  8999988777    6788888 99999999999998777777765     999


Q ss_pred             ceeecccCcCCCcCchh----ccCC-CCCcEEEcCcCC----------------CCCCcEEEccCCcCCCCCc----hhh
Q 045233          143 VHLDLGNNNLTGPIPST----LARL-TNLKYLDLKVTS----------------MKNLTWLDISNNKIEGSIP----GEL  197 (325)
Q Consensus       143 ~~L~Ls~N~l~~~~p~~----~~~l-~~L~~L~l~~n~----------------l~~L~~L~Ls~n~l~~~~p----~~~  197 (325)
                      ++|+|++|++++..+..    +..+ ++|++|++++|.                .++|++|++++|.+++..+    ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            99999999999777764    4444 899999999992                3599999999999996544    444


Q ss_pred             hCCC-CCCEEECCCCcCCCCCCCcc----cCC-CCCcEEEccCCCCCchHHH
Q 045233          198 TELS-RPDCLSLSANKLSGPVPFSN----KQL-STMYIVRLSPNKGLGSNFI  243 (325)
Q Consensus       198 ~~l~-~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~l~~N~~~~~~~~  243 (325)
                      ..++ +|++|++++|++++..+..+    ... ++|+.|++++|.+......
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~  214 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA  214 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH
Confidence            5665 99999999999997766444    344 6999999999998764443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=9.5e-15  Score=137.79  Aligned_cols=133  Identities=25%  Similarity=0.317  Sum_probs=100.5

Q ss_pred             CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233           90 PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL  169 (325)
Q Consensus        90 ~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  169 (325)
                      ++|++|++  ++|.+.+ +| .+.++++|++|++++|++++ +|..+   ++|++|++++|++++ +| .+..+++|++|
T Consensus       131 ~~L~~L~L--~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLGV--SNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEEC--CSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred             CCCCEEEC--cCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence            68888888  7888876 66 58888999999999998884 55433   588899999999885 66 58889999999


Q ss_pred             EcCcCCC-------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          170 DLKVTSM-------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       170 ~l~~n~l-------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      ++++|.+       ++|++|++++|.++ .+| .+..+++|+.|++++|++++ +|..   .++|+.|++++|.+.
T Consensus       201 ~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          201 YADNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT  270 (454)
T ss_dssp             ECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred             ECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence            9998854       36888999999888 666 47888888888888888875 3332   244445555544443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.61  E-value=8.2e-15  Score=143.04  Aligned_cols=74  Identities=28%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             CCCcEEEcCcCC-------CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233          164 TNLKYLDLKVTS-------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       164 ~~L~~L~l~~n~-------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~  236 (325)
                      ++|+.|++++|.       +++|+.|++++|+++ .+|.   .+++|+.|++++|+|+ .+|..+..+++|+.|++++|+
T Consensus       221 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence            556667776663       346777888888777 4554   5678999999999999 678889999999999999999


Q ss_pred             CCchHH
Q 045233          237 GLGSNF  242 (325)
Q Consensus       237 ~~~~~~  242 (325)
                      +.+...
T Consensus       296 l~~~~~  301 (622)
T 3g06_A          296 LSERTL  301 (622)
T ss_dssp             CCHHHH
T ss_pred             CCCcCH
Confidence            986544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=3.6e-15  Score=121.33  Aligned_cols=135  Identities=27%  Similarity=0.299  Sum_probs=106.3

Q ss_pred             CCeeEeeccccccCCcccc--ccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcC
Q 045233           61 GSIIGLNLSWYDVDLNAQA--QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN  138 (325)
Q Consensus        61 ~~v~~l~l~~l~~~~n~~~--~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  138 (325)
                      ..++.++++     .|.+.  .++.. +..+++|+.|++  ++|.+.+.  ..+..+++|++|++++|.+++.+|..+..
T Consensus        24 ~~L~~L~l~-----~n~l~~~~i~~~-~~~l~~L~~L~l--~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   93 (168)
T 2ell_A           24 AAVRELVLD-----NCKSNDGKIEGL-TAEFVNLEFLSL--INVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK   93 (168)
T ss_dssp             TSCSEEECC-----SCBCBTTBCSSC-CGGGGGCCEEEE--ESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred             ccCCEEECC-----CCCCChhhHHHH-HHhCCCCCEEeC--cCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence            345555555     44444  44443 788999999999  89998876  77899999999999999999778888888


Q ss_pred             CcccceeecccCcCCCcCc-hhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCc---hhhhCCCCCCEEECCCCcCC
Q 045233          139 LRNLVHLDLGNNNLTGPIP-STLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIP---GELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       139 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~  214 (325)
                      +++|++|++++|++++..+ ..+..+++             |++|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~-------------L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTLEPLKKLEC-------------LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGGGGGSSCSC-------------CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCCCEEeccCCccCcchhHHHHhcCCC-------------CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            9999999999999995322 56666555             5556777888886555   58899999999999999987


Q ss_pred             CCCCC
Q 045233          215 GPVPF  219 (325)
Q Consensus       215 ~~~p~  219 (325)
                       .+|.
T Consensus       161 -~~~~  164 (168)
T 2ell_A          161 -EAPD  164 (168)
T ss_dssp             -BCCS
T ss_pred             -hccc
Confidence             4444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=2.2e-15  Score=150.03  Aligned_cols=134  Identities=28%  Similarity=0.318  Sum_probs=100.5

Q ss_pred             cCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhc
Q 045233           81 LSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTL  160 (325)
Q Consensus        81 l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  160 (325)
                      +....+..++.|+.|+|  ++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|
T Consensus       215 ~~~~~~~~l~~L~~L~L--s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~  289 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDL--SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL  289 (727)
T ss_dssp             -------CCCCCCEEEC--TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred             cChhhhccCCCCcEEEC--CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence            34456888899999999  888877 67777778999999999999998 88888999999999999999999 789889


Q ss_pred             cCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCC-CCEEECCCCcCCCCCCC
Q 045233          161 ARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSR-PDCLSLSANKLSGPVPF  219 (325)
Q Consensus       161 ~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~  219 (325)
                      ..+++|++|+|++|          .+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus       290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            99999999988888          4567888888888888877776644311 11244555555554444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.58  E-value=1.3e-14  Score=136.90  Aligned_cols=132  Identities=24%  Similarity=0.304  Sum_probs=62.2

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +..+++|++|++  ++|.+.+ +|..   +++|++|++++|.+++ +|..   .++|++|++++|++++ +|..   .++
T Consensus       233 ~~~l~~L~~L~l--~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~  298 (454)
T 1jl5_A          233 LQNLPFLTTIYA--DNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPN  298 (454)
T ss_dssp             CTTCTTCCEEEC--CSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTT
T ss_pred             cCCCCCCCEEEC--CCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCc
Confidence            445555555555  4555443 2221   2445555555555553 3321   2456666666666654 1110   134


Q ss_pred             CcEEEcCcCCC-------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          166 LKYLDLKVTSM-------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       166 L~~L~l~~n~l-------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      |++|++++|.+       ++|++|++++|++++ +|..   +++|+.|++++|++++ +|.   .+++|+.|++++|++.
T Consensus       299 L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~  370 (454)
T 1jl5_A          299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR  370 (454)
T ss_dssp             CCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCC
Confidence            44444444422       245555555555553 3322   3455555555555552 333   2445555555555554


Q ss_pred             c
Q 045233          239 G  239 (325)
Q Consensus       239 ~  239 (325)
                      +
T Consensus       371 ~  371 (454)
T 1jl5_A          371 E  371 (454)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=3.5e-15  Score=145.67  Aligned_cols=88  Identities=23%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                      ..++++.|.+..++.    .+++|++|++  ++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|+++
T Consensus        64 ~~L~L~~N~l~~lp~----~l~~L~~L~L--s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~  129 (622)
T 3g06_A           64 TTLVIPDNNLTSLPA----LPPELRTLEV--SGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF  129 (622)
T ss_dssp             SEEEECSCCCSCCCC----CCTTCCEEEE--CSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred             cEEEecCCCCCCCCC----cCCCCCEEEc--CCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence            334444454444443    3556666666  5565553 333   45666666666666653 333   34455555555


Q ss_pred             cCcCCCcCchhccCCCCCcEEEcCcC
Q 045233          149 NNNLTGPIPSTLARLTNLKYLDLKVT  174 (325)
Q Consensus       149 ~N~l~~~~p~~~~~l~~L~~L~l~~n  174 (325)
                      +|+++ .+|..   +++|++|++++|
T Consensus       130 ~N~l~-~lp~~---l~~L~~L~Ls~N  151 (622)
T 3g06_A          130 GNQLT-SLPVL---PPGLQELSVSDN  151 (622)
T ss_dssp             SSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             CCCCC-cCCCC---CCCCCEEECcCC
Confidence            55555 23332   245555555555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=1e-14  Score=116.13  Aligned_cols=122  Identities=27%  Similarity=0.301  Sum_probs=97.5

Q ss_pred             cccCCcccc--ccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           71 YDVDLNAQA--QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        71 l~~~~n~~~--~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                      ++++.+.+.  .++. .+..+++|+.|++  ++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        22 L~l~~n~l~~~~~~~-~~~~l~~L~~L~l--~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           22 LVLDNSRSNEGKLEG-LTDEFEELEFLST--INVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             EECTTCBCBTTBCCS-CCTTCTTCCEEEC--TTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             EEccCCcCChhHHHH-HHhhcCCCcEEEC--cCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            334445544  4443 5788999999999  89998876  778999999999999999997789988899999999999


Q ss_pred             cCcCCCc-CchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCc---hhhhCCCCCCEEECCC
Q 045233          149 NNNLTGP-IPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIP---GELTELSRPDCLSLSA  210 (325)
Q Consensus       149 ~N~l~~~-~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~  210 (325)
                      +|++++. .|..+..+++|             ++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L-------------~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENL-------------KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTC-------------CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcCCChHHHHHHhhCCCC-------------CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999953 23667666554             556777888886665   5789999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=2e-16  Score=153.06  Aligned_cols=147  Identities=19%  Similarity=0.166  Sum_probs=107.9

Q ss_pred             CCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-------------CCCCCchhhcCC--------------
Q 045233           87 SCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-------------LSGTIPSNIGNL--------------  139 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l--------------  139 (325)
                      ..+++|+.|++  +.|.+. .+|+.++++++|+.|++++|.             +.+..|..++.+              
T Consensus       346 ~~~~~L~~L~L--s~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCEL--SVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCC--CHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccC--ChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            45666666666  566554 456666666666666665443             223333332221              


Q ss_pred             ------------------cccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCC
Q 045233          140 ------------------RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEG  191 (325)
Q Consensus       140 ------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~  191 (325)
                                        ..|+.|+|++|++++ +|. +..+++|+.|++++|          .+++|+.|+|++|++++
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC
Confidence                              136678888888884 666 888888888888888          45688899999999995


Q ss_pred             CCchhhhCCCCCCEEECCCCcCCCCC-CCcccCCCCCcEEEccCCCCCch
Q 045233          192 SIPGELTELSRPDCLSLSANKLSGPV-PFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       192 ~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                       +| .++.+++|+.|+|++|+|++.. |..++.+++|+.|++++|++.+.
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence             67 8899999999999999999876 88899999999999999987653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=6.8e-15  Score=120.74  Aligned_cols=132  Identities=17%  Similarity=0.182  Sum_probs=104.0

Q ss_pred             ccCCCCCCCEEEeccccCcCCCCCcccccCC-CcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCC
Q 045233           85 NFSCFPNLESLRIQAYYYGFTGSIPSDISAL-SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL  163 (325)
Q Consensus        85 ~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  163 (325)
                      .+..+++|+.|++  ++|.+.. +|. +..+ ++|++|++++|.+++.  +.+..+++|++|++++|++++..|..+..+
T Consensus        14 ~~~~~~~L~~L~l--~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           14 QYTNAVRDRELDL--RGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             EEECTTSCEEEEC--TTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             hcCCcCCceEEEe--eCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence            3566889999999  8888885 454 4444 4999999999999854  678899999999999999995544545666


Q ss_pred             CCCcEEEcCcCCCCCCcEEEccCCcCCCCCch--hhhCCCCCCEEECCCCcCCCCCCC----cccCCCCCcEEEccCCCC
Q 045233          164 TNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG--ELTELSRPDCLSLSANKLSGPVPF----SNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       164 ~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~l~~N~~  237 (325)
                      ++|++             |++++|.++ .+|.  .+..+++|+.|++++|+++. +|.    .+..+++|+.|++++|..
T Consensus        88 ~~L~~-------------L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           88 PDLTE-------------LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TTCCE-------------EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCE-------------EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            66555             566667775 4554  78899999999999999984 455    388999999999999974

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=2e-17  Score=138.58  Aligned_cols=113  Identities=24%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +..+++|++|++  ++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..++ 
T Consensus        44 ~~~l~~L~~L~l--s~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~-  115 (198)
T 1ds9_A           44 LSTLKACKHLAL--STNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV-  115 (198)
T ss_dssp             HHHTTTCSEEEC--SEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH-
T ss_pred             HhcCCCCCEEEC--CCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC-
Confidence            344444444444  4444443 33 4444444444444444444 334444444444444444444442 22 233222 


Q ss_pred             CcEEEcCcCCCCCCcEEEccCCcCCCCCc-hhhhCCCCCCEEECCCCcCCCCCC
Q 045233          166 LKYLDLKVTSMKNLTWLDISNNKIEGSIP-GELTELSRPDCLSLSANKLSGPVP  218 (325)
Q Consensus       166 L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p  218 (325)
                                  +|++|++++|++++..+ ..+..+++|++|++++|++++.+|
T Consensus       116 ------------~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          116 ------------NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ------------HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             ------------CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence                        23334444444442211 345555566666666665554433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=4.1e-14  Score=115.51  Aligned_cols=108  Identities=26%  Similarity=0.251  Sum_probs=84.8

Q ss_pred             CCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhh
Q 045233          118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGEL  197 (325)
Q Consensus       118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~  197 (325)
                      .+.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|..+++|+             +|+|++|++++..+..|
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~-------------~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLT-------------RLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCS-------------EEECCSSCCCCCCTTTT
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCC-------------EEECCCCCcCccChhhc
Confidence            467888888887 5665553  7788888888888876677777665544             45667777776666778


Q ss_pred             hCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchH
Q 045233          198 TELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                      ..+++|+.|+|++|+|++..+..+..+++|+.|++++|++.|..
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            88999999999999999777777899999999999999998764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.54  E-value=3.5e-16  Score=147.34  Aligned_cols=149  Identities=19%  Similarity=0.127  Sum_probs=92.8

Q ss_pred             CCCCCEEEeccccCcCCCC----CcccccCCCcCCEEecccCCCCCCC-----chhhcCCcccceeecccCcCCCc----
Q 045233           89 FPNLESLRIQAYYYGFTGS----IPSDISALSKLQLLDLSLNRLSGTI-----PSNIGNLRNLVHLDLGNNNLTGP----  155 (325)
Q Consensus        89 l~~L~~L~l~~~~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----  155 (325)
                      .++|++|++  ++|.+.+.    ++..+..+++|++|++++|.++...     +..+..+++|++|++++|+++..    
T Consensus       198 ~~~L~~L~L--~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~  275 (461)
T 1z7x_W          198 PCQLEALKL--ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD  275 (461)
T ss_dssp             CCCCCEEEC--TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             CCCceEEEc--cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence            557777777  67776653    4555666777777777777766322     22223467777777777777743    


Q ss_pred             CchhccCCCCCcEEEcCcCCC----------------CCCcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCcCCC
Q 045233          156 IPSTLARLTNLKYLDLKVTSM----------------KNLTWLDISNNKIEGS----IPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       156 ~p~~~~~l~~L~~L~l~~n~l----------------~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      ++..+..+++|++|++++|.+                ++|++|++++|.+++.    ++..+..+++|+.|++++|.+++
T Consensus       276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            455666677777777777732                4677777777776654    34555566667777777766654


Q ss_pred             CCCCcccC-----CCCCcEEEccCCCCCc
Q 045233          216 PVPFSNKQ-----LSTMYIVRLSPNKGLG  239 (325)
Q Consensus       216 ~~p~~~~~-----l~~L~~L~l~~N~~~~  239 (325)
                      ..+..+..     .++|+.|++++|.+..
T Consensus       356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          356 AGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             ccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            33322221     4566666666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.52  E-value=1.2e-15  Score=143.79  Aligned_cols=122  Identities=18%  Similarity=0.173  Sum_probs=52.9

Q ss_pred             CcCCEEecccCCCCCC----CchhhcCCcccceeecccCcCCCcC-----chhccCCCCCcEEEcCcC------------
Q 045233          116 SKLQLLDLSLNRLSGT----IPSNIGNLRNLVHLDLGNNNLTGPI-----PSTLARLTNLKYLDLKVT------------  174 (325)
Q Consensus       116 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~l~~n------------  174 (325)
                      ++|++|++++|.++..    ++..+..+++|++|++++|++++..     +..+..+++|++|++++|            
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            3455555555554432    3444444455555555555444221     111223445555555544            


Q ss_pred             ---CCCCCcEEEccCCcCCCCCchhhhC-----CCCCCEEECCCCcCCCC----CCCcccCCCCCcEEEccCCCC
Q 045233          175 ---SMKNLTWLDISNNKIEGSIPGELTE-----LSRPDCLSLSANKLSGP----VPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       175 ---~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~  237 (325)
                         .+++|++|++++|.+++..+..+..     .++|+.|++++|.+++.    ++..+..+++|+.|++++|.+
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL  353 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence               1344555555555444332222221     13455555555554432    233334444555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=1e-13  Score=113.65  Aligned_cols=107  Identities=24%  Similarity=0.262  Sum_probs=76.5

Q ss_pred             CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhh
Q 045233          119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELT  198 (325)
Q Consensus       119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~  198 (325)
                      +.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|.++++|++             |+|++|++++..+..|.
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-------------L~Ls~N~l~~i~~~~~~   78 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQ-------------LYFNSNKLTAIPTGVFD   78 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCE-------------EECCSSCCCCCCTTTTT
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCE-------------EECCCCCCCccChhHhC
Confidence            56677777775 5565443  67777777777777666666666555444             45566666655555667


Q ss_pred             CCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchH
Q 045233          199 ELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                      .+++|+.|+|++|+|++..+..+..+++|+.|++++|++.|..
T Consensus        79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            8888888888888888666666888888999999999888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=8.5e-14  Score=134.68  Aligned_cols=113  Identities=25%  Similarity=0.318  Sum_probs=81.9

Q ss_pred             cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCC
Q 045233          117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNN  187 (325)
Q Consensus       117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n  187 (325)
                      .|+.|++++|.+++ +|. ++.+++|+.|+|++|+++ .+|..++.+++|+.|++++|         .+++|+.|+|++|
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence            35666666666663 444 666666666666666666 55666666666666666665         3567788899999


Q ss_pred             cCCCCC-chhhhCCCCCCEEECCCCcCCCCCCCc---ccCCCCCcEEEc
Q 045233          188 KIEGSI-PGELTELSRPDCLSLSANKLSGPVPFS---NKQLSTMYIVRL  232 (325)
Q Consensus       188 ~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~l  232 (325)
                      ++++.. |..+..+++|+.|+|++|++++.+|..   +..+++|+.|++
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999876 999999999999999999999765532   344788888864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.47  E-value=7.7e-14  Score=127.05  Aligned_cols=160  Identities=19%  Similarity=0.200  Sum_probs=116.8

Q ss_pred             ccccccCCccc-cccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           68 LSWYDVDLNAQ-AQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        68 l~~l~~~~n~~-~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      |+.++++.|.+ ..++...|.++++++++... ..|.+....|..|..+++|++|++++|.+....+..+....++..|+
T Consensus        56 L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~-~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~  134 (350)
T 4ay9_X           56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIE-KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD  134 (350)
T ss_dssp             CCEEEEECCTTCCEECTTSBCSCTTCCEEEEE-EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEE
T ss_pred             CCEEECcCCCCCCccChhHhhcchhhhhhhcc-cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhh
Confidence            44556667765 44666678889888764441 66888888888899999999999999999966666666777788888


Q ss_pred             ccc-CcCCCcCchhccCCC-CCcEEEcCcCCC----------CCCcEEEccC-CcCCCCCchhhhCCCCCCEEECCCCcC
Q 045233          147 LGN-NNLTGPIPSTLARLT-NLKYLDLKVTSM----------KNLTWLDISN-NKIEGSIPGELTELSRPDCLSLSANKL  213 (325)
Q Consensus       147 Ls~-N~l~~~~p~~~~~l~-~L~~L~l~~n~l----------~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~l  213 (325)
                      +.+ |++....+..|..+. .++.|++++|.+          .+|+.+++++ |.++...++.|.++++|+.|++++|+|
T Consensus       135 l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred             hccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence            865 567644455666664 688899998833          4678888875 566644446788999999999999999


Q ss_pred             CCCCCCcccCCCCCc
Q 045233          214 SGPVPFSNKQLSTMY  228 (325)
Q Consensus       214 ~~~~p~~~~~l~~L~  228 (325)
                      +...+..+.++++|+
T Consensus       215 ~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          215 HSLPSYGLENLKKLR  229 (350)
T ss_dssp             CCCCSSSCTTCCEEE
T ss_pred             CccChhhhccchHhh
Confidence            855444444444333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=2.9e-13  Score=110.43  Aligned_cols=86  Identities=28%  Similarity=0.347  Sum_probs=39.7

Q ss_pred             CcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCch
Q 045233          116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG  195 (325)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~  195 (325)
                      ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|             ++|+|++|++++..+.
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L-------------~~L~L~~N~l~~~~~~   96 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL-------------TQLSLNDNQLKSIPRG   96 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------------CEEECCSSCCCCCCTT
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC-------------CEEECCCCccCEeCHH
Confidence            344444445554444444444445555555555555543333333333332             2233344444433344


Q ss_pred             hhhCCCCCCEEECCCCcCC
Q 045233          196 ELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       196 ~~~~l~~L~~L~L~~N~l~  214 (325)
                      .|..+++|+.|+|++|+++
T Consensus        97 ~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           97 AFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTTTCTTCCEEECCSSCBC
T ss_pred             HhcCCCCCCEEEeCCCCCC
Confidence            4555555555555555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=6.6e-16  Score=129.30  Aligned_cols=126  Identities=21%  Similarity=0.182  Sum_probs=96.8

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.++++.|.+..++  .+..+++|+.|++  ++|.+. .+|..+..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus        50 L~~L~ls~n~l~~l~--~~~~l~~L~~L~l--~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           50 CKHLALSTNNIEKIS--SLSGMENLRILSL--GRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             CSEEECSEEEESCCC--CHHHHTTCCEEEE--EEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             CCEEECCCCCCcccc--ccccCCCCCEEEC--CCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence            445566677777766  6888999999999  888887 577778888999999999999995 55 6889999999999


Q ss_pred             ccCcCCCcCc-hhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCch----------hhhCCCCCCEEECCCCcCCC
Q 045233          148 GNNNLTGPIP-STLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG----------ELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       148 s~N~l~~~~p-~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~L~~N~l~~  215 (325)
                      ++|++++..+ ..+..+++|+             +|++++|.+++.+|.          .+..+++|+.|+  +|.++.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~-------------~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLE-------------DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCS-------------EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCcCCchhHHHHHhcCCCCC-------------EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            9999994322 3566665554             556677777655543          377888999887  676663

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=7.8e-13  Score=108.31  Aligned_cols=104  Identities=25%  Similarity=0.312  Sum_probs=67.8

Q ss_pred             EEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCc
Q 045233           94 SLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV  173 (325)
Q Consensus        94 ~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  173 (325)
                      .+++  ++|.+. .+|..+.  ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|       
T Consensus        16 ~l~~--~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-------   83 (174)
T 2r9u_A           16 LVNC--QNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL-------   83 (174)
T ss_dssp             EEEC--CSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             EEEe--CCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh-------
Confidence            4445  455443 3444443  677777777777776667777777777777777777775444445555444       


Q ss_pred             CCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          174 TSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       174 n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                            ++|+|++|++++..+..+..+++|+.|+|++|++..
T Consensus        84 ------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           84 ------TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ------CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ------hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence                  444556666665555567778888888888888773

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=2e-13  Score=111.94  Aligned_cols=124  Identities=19%  Similarity=0.194  Sum_probs=95.4

Q ss_pred             ccccCCccccccCccccCCCC-CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           70 WYDVDLNAQAQLSQLNFSCFP-NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        70 ~l~~~~n~~~~l~~~~~~~l~-~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                      .++++.|.+..++.  +..+. +|+.|++  ++|.+.+.  +.+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        23 ~L~l~~n~l~~i~~--~~~~~~~L~~L~L--s~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           23 ELDLRGYKIPVIEN--LGATLDQFDAIDF--SDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             EEECTTSCCCSCCC--GGGGTTCCSEEEC--CSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             EEEeeCCCCchhHH--hhhcCCCCCEEEC--CCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            34444555555532  44444 9999999  89998875  678999999999999999996544556999999999999


Q ss_pred             cCcCCCcCch--hccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCch----hhhCCCCCCEEECCCCcCC
Q 045233          149 NNNLTGPIPS--TLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG----ELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       149 ~N~l~~~~p~--~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~  214 (325)
                      +|+++ .+|.  .+..+++|             +.|++++|.++ .+|.    .+..+++|+.|++++|.+.
T Consensus        97 ~N~i~-~~~~~~~l~~l~~L-------------~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           97 NNSLV-ELGDLDPLASLKSL-------------TYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             SCCCC-CGGGGGGGGGCTTC-------------CEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCcCC-cchhhHhhhcCCCC-------------CEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99997 5665  56655554             55667777777 4455    4889999999999999865

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=8.4e-13  Score=119.08  Aligned_cols=57  Identities=11%  Similarity=0.160  Sum_probs=36.6

Q ss_pred             ccCccccCC--------CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCC
Q 045233           80 QLSQLNFSC--------FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL  139 (325)
Q Consensus        80 ~l~~~~~~~--------l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  139 (325)
                      .++...|.+        +++|+.|++  .. .+...-+..|.++++|++|++++|.+....+..|.++
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L--~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~  147 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVIL--SE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADS  147 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CB--CT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTT
T ss_pred             ccCHHHhcccccccccccCCCcEEEC--Cc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCC
Confidence            455556777        888888888  55 5665556677888888888888877643333333333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=2.7e-12  Score=116.41  Aligned_cols=104  Identities=24%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             EecccC-CCCCCCchhhcCCcccceeeccc-CcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhh
Q 045233          121 LDLSLN-RLSGTIPSNIGNLRNLVHLDLGN-NNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELT  198 (325)
Q Consensus       121 L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~  198 (325)
                      ++++++ .++ .+|. +..+++|++|+|++ |++++..|..|..+++|+             .|+|++|+|++..|..|.
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~-------------~L~l~~N~l~~~~~~~~~   77 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELR-------------NLTIVKSGLRFVAPDAFH   77 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS-------------EEECCSSCCCEECTTGGG
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCC-------------EEECCCCccceeCHHHhc
Confidence            455554 555 3455 55555566666654 555544444554443333             334455555555555666


Q ss_pred             CCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          199 ELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      ++++|+.|+|++|+|++..+..+..++ |+.|++.+|++.|.
T Consensus        78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            666666666666666654444444444 66666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=2.9e-12  Score=116.24  Aligned_cols=108  Identities=22%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             CccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEecccc-CcCCCCCcccccCCCcCCEEecccCC
Q 045233           49 HCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYY-YGFTGSIPSDISALSKLQLLDLSLNR  127 (325)
Q Consensus        49 ~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~  127 (325)
                      .|.|..+.|...               |.+..++.  +..+++|+.|+|  ++ |.+.+..+..|.++++|++|+|++|+
T Consensus         7 ~C~~~~v~~~~~---------------n~l~~ip~--l~~~~~L~~L~l--~~~n~l~~~~~~~~~~l~~L~~L~l~~N~   67 (347)
T 2ifg_A            7 PHGSSGLRCTRD---------------GALDSLHH--LPGAENLTELYI--ENQQHLQHLELRDLRGLGELRNLTIVKSG   67 (347)
T ss_dssp             CSSSSCEECCSS---------------CCCTTTTT--SCSCSCCSEEEC--CSCSSCCEECGGGSCSCCCCSEEECCSSC
T ss_pred             cccCCEEEcCCC---------------CCCCccCC--CCCCCCeeEEEc--cCCCCCCCcChhHhccccCCCEEECCCCc
Confidence            588888888542               13444565  788899999999  85 89988888899999999999999999


Q ss_pred             CCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC
Q 045233          128 LSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM  176 (325)
Q Consensus       128 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l  176 (325)
                      |++..|..|.++++|++|+|++|+|++..+..+..++ |+.|++.+|.+
T Consensus        68 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             cceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence            9988888999999999999999999965555565555 88888887744

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=1.1e-13  Score=127.16  Aligned_cols=62  Identities=11%  Similarity=0.164  Sum_probs=26.0

Q ss_pred             CCCcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCcCCCC----CCCcccCCCCCcEEEccCCCCC
Q 045233          177 KNLTWLDISNNKIEGS----IPGELTELSRPDCLSLSANKLSGP----VPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       177 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      ++|++|+|++|.+++.    ++..+...++|+.|+|++|.|++.    ++..+...++|+.|++++|++.
T Consensus       183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3444444444444421    123333444455555555444421    1222233344445555554443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=1.9e-12  Score=118.87  Aligned_cols=176  Identities=19%  Similarity=0.136  Sum_probs=118.2

Q ss_pred             CCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccc-cCCCcCCEEecccCCCCCCCchhh---
Q 045233           61 GSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNI---  136 (325)
Q Consensus        61 ~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~---  136 (325)
                      ..++.+++++..++......+...-....++|++|++  ++|.+.......+ ..+++|++|+|++|.++......+   
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L--s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL--ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC--TTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe--cCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            3466666665544433333333222234479999999  8888765433333 346789999999999985443444   


Q ss_pred             --cCCcccceeecccCcCCC----cCchhccCCCCCcEEEcCcC---------------CCCCCcEEEccCCcCCCC---
Q 045233          137 --GNLRNLVHLDLGNNNLTG----PIPSTLARLTNLKYLDLKVT---------------SMKNLTWLDISNNKIEGS---  192 (325)
Q Consensus       137 --~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~n---------------~l~~L~~L~Ls~n~l~~~---  192 (325)
                        ...++|++|+|++|.++.    .++..+..+++|++|++++|               ..++|+.|+|++|.+++.   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              346889999999999974    24455678999999999999               346899999999999864   


Q ss_pred             -CchhhhCCCCCCEEECCCCcCCCCCCCcccCC---C--CCcEEE--ccCCCCC
Q 045233          193 -IPGELTELSRPDCLSLSANKLSGPVPFSNKQL---S--TMYIVR--LSPNKGL  238 (325)
Q Consensus       193 -~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~--~L~~L~--l~~N~~~  238 (325)
                       ++..+...++|+.|+|++|.|++.....+..+   .  .++.+.  +..|.+.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence             34456677999999999999985433333222   2  166666  6666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.17  E-value=5e-11  Score=107.37  Aligned_cols=142  Identities=18%  Similarity=0.130  Sum_probs=110.7

Q ss_pred             CCCCCEEEeccccCcCC--------------------CCCcccccC--------CCcCCEEecccCCCCCCCchhhcCCc
Q 045233           89 FPNLESLRIQAYYYGFT--------------------GSIPSDISA--------LSKLQLLDLSLNRLSGTIPSNIGNLR  140 (325)
Q Consensus        89 l~~L~~L~l~~~~n~~~--------------------~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~~~~l~  140 (325)
                      +++|+.|+|  ++|.+.                    ...+..|.+        +++|+.|++++ .++..-+.+|.+++
T Consensus        48 l~~L~~LdL--s~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~  124 (329)
T 3sb4_A           48 FPSLKVLDI--SNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD  124 (329)
T ss_dssp             CTTCCEEEE--EEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred             hccCeEEec--CcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence            677888888  677666                    122345677        99999999999 88866677899999


Q ss_pred             ccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------------------------------------------
Q 045233          141 NLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------------------------------------------  174 (325)
Q Consensus       141 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------------------------------------------  174 (325)
                      +|+.+++++|.++...+..|..+.++..+....+                                              
T Consensus       125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred             ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence            9999999999987566667777766666654431                                              


Q ss_pred             -------------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCc-EEEccC
Q 045233          175 -------------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMY-IVRLSP  234 (325)
Q Consensus       175 -------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~l~~  234 (325)
                                         .+++|+.+++++|+++...+..|.++++|+.+++.+| ++...+.+|..+++|+ .+++.+
T Consensus       205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence                               1678999999998888777778889999999999887 7766677888888898 888876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.14  E-value=5.1e-12  Score=122.57  Aligned_cols=63  Identities=8%  Similarity=0.075  Sum_probs=27.8

Q ss_pred             CCCCcEEEccCCcCCC-CCchhhhCCCCCCEEECCCCcCCCC-CCCcccCCCCCcEEEccCCCCC
Q 045233          176 MKNLTWLDISNNKIEG-SIPGELTELSRPDCLSLSANKLSGP-VPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       176 l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      +++|++|++++|++++ .++..+.++++|+.|++++|.+++. ++.....+++|+.|++++|+++
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            4445555555555443 1223334445555555555554322 1222234445555555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.04  E-value=4.4e-11  Score=115.95  Aligned_cols=123  Identities=15%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             CCCCCCEEEeccccCcCCCC----CcccccCCCcCCEEecccCCCCC----CCchhhcCCcccceeecccCcCCCcCchh
Q 045233           88 CFPNLESLRIQAYYYGFTGS----IPSDISALSKLQLLDLSLNRLSG----TIPSNIGNLRNLVHLDLGNNNLTGPIPST  159 (325)
Q Consensus        88 ~l~~L~~L~l~~~~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  159 (325)
                      .+++|++|++  ++|.+.+.    ++..+..+++|++|++++|.+++    .++..+.++++|++|++++|.+.+ +|..
T Consensus       162 ~~~~L~~L~L--~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~  238 (592)
T 3ogk_B          162 HCRKIKTLLM--EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF  238 (592)
T ss_dssp             HCTTCSEEEC--TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred             hCCCCCEEEC--ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH
Confidence            4567777777  66666544    33344556777777777777752    334445567777777777777763 5566


Q ss_pred             ccCCCCCcEEEcCcC--------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233          160 LARLTNLKYLDLKVT--------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       160 ~~~l~~L~~L~l~~n--------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      +..+++|+.|+++..              .+++|+.++++++... .+|..+..+++|++|++++|.++
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCC
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCC
Confidence            666666666666421              2234444444443222 33444444555555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=2.9e-10  Score=103.72  Aligned_cols=151  Identities=19%  Similarity=0.202  Sum_probs=103.3

Q ss_pred             cCCCCCCCEEEeccccCcC---------CCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcC
Q 045233           86 FSCFPNLESLRIQAYYYGF---------TGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPI  156 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~---------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  156 (325)
                      ...+++|+.|.+  ..+..         .+.++..+..+++|+.|++++|.-. .++. +. +++|+.|++..|.++...
T Consensus       135 ~~~l~~L~~L~l--~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          135 KEKFAHFEGLFW--GDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             HHHHTTCSEEEE--CCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred             hhhcchhhheee--cCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence            345778888888  33322         1224455667788888888877311 2333 33 778888888888776433


Q ss_pred             chhcc--CCCCCcEEEcCc--------------------CCCCCCcEEEccCCcCCCCCchhhh---CCCCCCEEECCCC
Q 045233          157 PSTLA--RLTNLKYLDLKV--------------------TSMKNLTWLDISNNKIEGSIPGELT---ELSRPDCLSLSAN  211 (325)
Q Consensus       157 p~~~~--~l~~L~~L~l~~--------------------n~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~L~~N  211 (325)
                      ...+.  .+++|+.|+|+.                    ..+++|++|+|.+|.+.+..+..+.   .+++|+.|+|+.|
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            33343  678888888742                    1368999999999998765444443   4789999999999


Q ss_pred             cCCCC----CCCcccCCCCCcEEEccCCCCCchH
Q 045233          212 KLSGP----VPFSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       212 ~l~~~----~p~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                      .+++.    ++..+..+++|+.|+++.|.++...
T Consensus       290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             CCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            99863    3444567889999999999876443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.94  E-value=4.2e-10  Score=108.98  Aligned_cols=98  Identities=22%  Similarity=0.264  Sum_probs=51.1

Q ss_pred             CCCCCCEEEeccccCcCCCCCccccc-CCCcCCEEecccC-CCCCC-CchhhcCCcccceeecccCcCCCcCchhcc---
Q 045233           88 CFPNLESLRIQAYYYGFTGSIPSDIS-ALSKLQLLDLSLN-RLSGT-IPSNIGNLRNLVHLDLGNNNLTGPIPSTLA---  161 (325)
Q Consensus        88 ~l~~L~~L~l~~~~n~~~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---  161 (325)
                      .+++|++|++  ++|.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+.   
T Consensus       103 ~~~~L~~L~L--~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRL--KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEE--ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             hCCCCCeEEe--eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            4556666666  55555544444443 4566666666666 33321 333334566666666666665543333322   


Q ss_pred             -CCCCCcEEEcCcCC--------------CCCCcEEEccCC
Q 045233          162 -RLTNLKYLDLKVTS--------------MKNLTWLDISNN  187 (325)
Q Consensus       162 -~l~~L~~L~l~~n~--------------l~~L~~L~Ls~n  187 (325)
                       .+++|+.|++++|.              +++|++|++++|
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence             44466666665542              355666666555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.93  E-value=6.6e-09  Score=96.12  Aligned_cols=148  Identities=10%  Similarity=0.009  Sum_probs=61.7

Q ss_pred             cccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCch
Q 045233           79 AQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS  158 (325)
Q Consensus        79 ~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  158 (325)
                      ..++...|.++++|+.+++  ..|.+.......|. ..+|+.+.+..+ ++..-...|.++++|+.+++..| ++.....
T Consensus       169 ~~I~~~aF~~c~~L~~l~l--~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~  243 (401)
T 4fdw_A          169 EQLKEDIFYYCYNLKKADL--SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE  243 (401)
T ss_dssp             CEECSSTTTTCTTCCEEEC--TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTT
T ss_pred             cEehHHHhhCcccCCeeec--CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccc
Confidence            3344444555555555555  44433332222232 244444444422 33233334444445555544432 2212222


Q ss_pred             hccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCC-----CCCchhhhCCCCCCEEECCCCcCCCCCCCcccC
Q 045233          159 TLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIE-----GSIPGELTELSRPDCLSLSANKLSGPVPFSNKQ  223 (325)
Q Consensus       159 ~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  223 (325)
                      +|.+ .+|+.+.+..+          ++++|+.+++.+|.+.     ...+..|.++++|+.+++. +.++......|..
T Consensus       244 aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~  321 (401)
T 4fdw_A          244 AFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG  321 (401)
T ss_dssp             TTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT
T ss_pred             cccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC
Confidence            3333 33444433222          3445555555544433     2333445555555555554 2233333344444


Q ss_pred             CCCCcEEEcc
Q 045233          224 LSTMYIVRLS  233 (325)
Q Consensus       224 l~~L~~L~l~  233 (325)
                      +++|+.+.+.
T Consensus       322 c~~L~~l~lp  331 (401)
T 4fdw_A          322 NRKVTQLTIP  331 (401)
T ss_dssp             CCSCCEEEEC
T ss_pred             CCCccEEEEC
Confidence            5555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.91  E-value=7.9e-09  Score=95.63  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=112.1

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.++++.|.+..++...|. ..+|+.+.+  . +.+...-...|.++++|+.+++..| ++..-..+|.+ .+|+.+.+
T Consensus       182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l--p-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          182 LKKADLSKTKITKLPASTFV-YAGIEEVLL--P-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL  255 (401)
T ss_dssp             CCEEECTTSCCSEECTTTTT-TCCCSEEEC--C-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred             CCeeecCCCcceEechhhEe-ecccCEEEe--C-CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence            44455566677777777777 478888888  4 3355555667888888888888765 44344455666 67888888


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC----------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT----------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSAN  211 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n----------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N  211 (325)
                       .+.++...+..|.++++|+.+++..|                .+++|+.+++. +.++.....+|.++++|+.+.+..|
T Consensus       256 -p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          256 -PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             -ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             -CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence             44566455667888888888877554                44578888887 4466566677888888888888554


Q ss_pred             cCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          212 KLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       212 ~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                       ++...+.+|..+ +|+.+.+.+|...
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence             554556677778 8888888877643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.90  E-value=4.1e-11  Score=116.17  Aligned_cols=125  Identities=14%  Similarity=0.087  Sum_probs=87.9

Q ss_pred             CCcCCEEecccCCCCCCCchhhc-CCcccceeecc--c----CcCCCc-----CchhccCCCCCcEEEcCcC--------
Q 045233          115 LSKLQLLDLSLNRLSGTIPSNIG-NLRNLVHLDLG--N----NNLTGP-----IPSTLARLTNLKYLDLKVT--------  174 (325)
Q Consensus       115 l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~l~~n--------  174 (325)
                      +++|++|+++.|.+++.....+. .+++|+.|+++  +    |.++..     ++..+..+++|+.|+++++        
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~  450 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY  450 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHH
Confidence            56677776666666654444443 47788888888  3    455521     1223567788888888764        


Q ss_pred             ---CCCCCcEEEccCCcCCCCCchhh-hCCCCCCEEECCCCcCCCCCCC-cccCCCCCcEEEccCCCCCc
Q 045233          175 ---SMKNLTWLDISNNKIEGSIPGEL-TELSRPDCLSLSANKLSGPVPF-SNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       175 ---~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~l~~N~~~~  239 (325)
                         .+++|+.|++++|.+++..+..+ .++++|+.|++++|.+++..+. ....+++|+.|++++|+++.
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence               27889999999999876655555 6689999999999998643332 34568899999999998843

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.74  E-value=9.7e-11  Score=102.00  Aligned_cols=14  Identities=0%  Similarity=-0.391  Sum_probs=10.8

Q ss_pred             CCccceeeEeCCCC
Q 045233           48 DHCKWIGITCNSAG   61 (325)
Q Consensus        48 ~~C~w~gv~c~~~~   61 (325)
                      ..|.|.|+.|+..+
T Consensus        76 ~l~~~~g~i~~~~~   89 (267)
T 3rw6_A           76 ALKAVNYKILDREN   89 (267)
T ss_dssp             HHHHTTSSCBCTTS
T ss_pred             HHHhcCcEEECCCC
Confidence            45789999998654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=2e-08  Score=91.57  Aligned_cols=144  Identities=20%  Similarity=0.228  Sum_probs=99.1

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhc--CCcccceeeccc--CcCCCc-----C
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIG--NLRNLVHLDLGN--NNLTGP-----I  156 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~--N~l~~~-----~  156 (325)
                      +..+|+|+.|++  .++.-. .++. +. +++|++|++..|.+.......+.  .+++|+.|+|+.  |...+.     +
T Consensus       168 l~~~P~L~~L~L--~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          168 LDAMPLLNNLKI--KGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHTCTTCCEEEE--ECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HhcCCCCcEEEE--eCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            467899999999  665211 2333 33 78999999999988744434444  789999999863  222211     1


Q ss_pred             chhc--cCCCCCcEEEcCcC--------------CCCCCcEEEccCCcCCCCC----chhhhCCCCCCEEECCCCcCCCC
Q 045233          157 PSTL--ARLTNLKYLDLKVT--------------SMKNLTWLDISNNKIEGSI----PGELTELSRPDCLSLSANKLSGP  216 (325)
Q Consensus       157 p~~~--~~l~~L~~L~l~~n--------------~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~  216 (325)
                      ...+  ..+++|++|++.+|              .+++|++|+|+.|.+++..    +..+..+++|+.|++++|.++..
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            1223  25789999999877              3678999999999998743    33445679999999999998853


Q ss_pred             CCCcccC-CCCCcEEEccCCC
Q 045233          217 VPFSNKQ-LSTMYIVRLSPNK  236 (325)
Q Consensus       217 ~p~~~~~-l~~L~~L~l~~N~  236 (325)
                      .-..+.. +  ...++++.+.
T Consensus       323 ~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          323 MKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHHc--CCEEEecCCc
Confidence            2222332 2  3557887775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=1.8e-08  Score=82.97  Aligned_cols=115  Identities=12%  Similarity=0.090  Sum_probs=70.0

Q ss_pred             cccCCCcCCEEecccC-CCCC----CCchhhcCCcccceeecccCcCCCcC----chhccCCCCCcEEEcCcCCCCCCcE
Q 045233          111 DISALSKLQLLDLSLN-RLSG----TIPSNIGNLRNLVHLDLGNNNLTGPI----PSTLARLTNLKYLDLKVTSMKNLTW  181 (325)
Q Consensus       111 ~l~~l~~L~~L~Ls~n-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~l~~n~l~~L~~  181 (325)
                      .+...+.|++|+|++| .+..    .+...+...++|++|+|++|++....    ...+...             ++|++
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-------------~~L~~   97 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-------------NTLKS   97 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-------------SSCCE
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-------------CCcCE
Confidence            3445566666666666 6652    23344555566777777777665321    1222222             33455


Q ss_pred             EEccCCcCCCC----CchhhhCCCCCCEEEC--CCCcCCCC----CCCcccCCCCCcEEEccCCCCC
Q 045233          182 LDISNNKIEGS----IPGELTELSRPDCLSL--SANKLSGP----VPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       182 L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      |+|++|.+...    +...+...+.|++|+|  ++|.++..    +...+...++|+.|++++|.+.
T Consensus        98 L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             EECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            56666666543    3455666778888888  77888743    3344566788999999999764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=3.1e-08  Score=81.53  Aligned_cols=100  Identities=15%  Similarity=0.138  Sum_probs=72.0

Q ss_pred             CchhhcCCcccceeecccC-cCCCc----CchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCC----CchhhhCCCC
Q 045233          132 IPSNIGNLRNLVHLDLGNN-NLTGP----IPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGS----IPGELTELSR  202 (325)
Q Consensus       132 ~p~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~  202 (325)
                      +...+...+.|++|+|++| .+...    +...+...+             +|++|+|++|.+...    +...+...+.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-------------~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~   94 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-------------YVKKFSIVGTRSNDPVAFALAEMLKVNNT   94 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-------------SCCEEECTTSCCCHHHHHHHHHHHHHCSS
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-------------CcCEEECcCCCCChHHHHHHHHHHHhCCC
Confidence            4455677889999999999 88742    223343333             456667777877643    3455667789


Q ss_pred             CCEEECCCCcCCCC----CCCcccCCCCCcEEEc--cCCCCCchHHHH
Q 045233          203 PDCLSLSANKLSGP----VPFSNKQLSTMYIVRL--SPNKGLGSNFII  244 (325)
Q Consensus       203 L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l--~~N~~~~~~~~~  244 (325)
                      |++|+|++|.|++.    +...+...+.|+.|++  ++|.+.......
T Consensus        95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            99999999999853    4566788889999999  889987654433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=2.2e-07  Score=80.71  Aligned_cols=83  Identities=23%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             cCCCcCCEEecccCCCCC--CCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCC
Q 045233          113 SALSKLQLLDLSLNRLSG--TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIE  190 (325)
Q Consensus       113 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~  190 (325)
                      .++++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+..          + +|++|+|++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~----------l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG----------L-KLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT----------S-CCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc----------C-CcceEEccCCcCc
Confidence            568899999999999997  4567778899999999999999854  23333331          2 4677788888888


Q ss_pred             CCCc-------hhhhCCCCCCEEEC
Q 045233          191 GSIP-------GELTELSRPDCLSL  208 (325)
Q Consensus       191 ~~~p-------~~~~~l~~L~~L~L  208 (325)
                      +.+|       ..+..+++|+.||=
T Consensus       234 ~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          234 DTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             cccCcchhHHHHHHHHCcccCeECC
Confidence            7665       35788999998873

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.96  E-value=4e-05  Score=70.34  Aligned_cols=58  Identities=7%  Similarity=-0.023  Sum_probs=31.7

Q ss_pred             CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCC
Q 045233          176 MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN  235 (325)
Q Consensus       176 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N  235 (325)
                      +.+|+.+.+.++ ++.....+|.++.+|+.+++.++ ++.....+|.++++|+.+.+..|
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            345555555433 44344455666666666666533 44333455666666666666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.91  E-value=2.5e-05  Score=71.63  Aligned_cols=129  Identities=10%  Similarity=0.050  Sum_probs=75.5

Q ss_pred             cccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcC
Q 045233           77 AQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPI  156 (325)
Q Consensus        77 ~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  156 (325)
                      .+..++..+|.++.+|+.+.+  . +.+...-..+|.++++|+.+++..+ ++..-...|.++.+|+.+.+..+ +....
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~l--p-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~  132 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKI--P-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG  132 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEEC--C-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             eEeEhHHHHhhCCCCceEEEe--C-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec
Confidence            356677888999999999998  4 3455555667888999999999765 55344566888888888776644 22223


Q ss_pred             chhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCC
Q 045233          157 PSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSAN  211 (325)
Q Consensus       157 p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N  211 (325)
                      ...|.++..+........         .+++|+.+.+.++- .......|.++.+|+.+.+..|
T Consensus       133 ~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          133 VEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred             ceeeecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence            334444332222211111         34455555554432 2233445555555555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=4.1e-06  Score=67.86  Aligned_cols=78  Identities=13%  Similarity=0.170  Sum_probs=37.4

Q ss_pred             CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCCCCchhhcCC----cccceeecccCc-CCCcCchhccCCC
Q 045233           91 NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSGTIPSNIGNL----RNLVHLDLGNNN-LTGPIPSTLARLT  164 (325)
Q Consensus        91 ~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~  164 (325)
                      .|+.||+  +++.++..--..+..+++|++|+|++|. ++..--..+..+    ++|++|+|++|. ++..--..+..++
T Consensus        62 ~L~~LDL--s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDA--TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CEEEEEE--ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             eEeEEeC--cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            4566666  5555544333345556666666666663 443222333433    256666666653 5432222333344


Q ss_pred             CCcEEE
Q 045233          165 NLKYLD  170 (325)
Q Consensus       165 ~L~~L~  170 (325)
                      +|+.|+
T Consensus       140 ~L~~L~  145 (176)
T 3e4g_A          140 NLKYLF  145 (176)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
Confidence            444333

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.89  E-value=7e-06  Score=66.45  Aligned_cols=36  Identities=14%  Similarity=0.133  Sum_probs=20.3

Q ss_pred             CcCCEEecccCCCCCCCchhhcCCcccceeecccCc
Q 045233          116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN  151 (325)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  151 (325)
                      ..|+.||++++.++..--..+.++++|+.|+|++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            346666666666554333444555666666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.75  E-value=0.00012  Score=67.09  Aligned_cols=58  Identities=9%  Similarity=0.128  Sum_probs=29.2

Q ss_pred             CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCC
Q 045233          176 MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN  235 (325)
Q Consensus       176 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N  235 (325)
                      +.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++
T Consensus       310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            344444444432 33333445556666666666433 44333445556666666665554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.72  E-value=8.2e-05  Score=68.21  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=59.2

Q ss_pred             cccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCc
Q 045233          111 DISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLT  180 (325)
Q Consensus       111 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~  180 (325)
                      .|..+..|+.+.+..+..+ .-...|.++++|+.+.+. +.++......|.++.+|+.+++..+          ++.+|+
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence            3444444444444433222 223334444444444443 2233222334444444444444332          345556


Q ss_pred             EEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCC
Q 045233          181 WLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       181 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~  237 (325)
                      .+.+..+ ++.....+|.++++|+.+++.++....   ..+....+|+.+.+..|..
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            6666543 665566789999999999999876541   3466777888888876643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.70  E-value=0.00028  Score=64.16  Aligned_cols=121  Identities=17%  Similarity=0.172  Sum_probs=75.3

Q ss_pred             ccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcE
Q 045233          112 ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTW  181 (325)
Q Consensus       112 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~  181 (325)
                      +....+|+.+.+..+ +.......|.++..|+.+.+..+ ++......|.++.+|+.+.+..+          .+++|+.
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCE
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccc
Confidence            334455555555443 22233445666777777777654 44344456777777777766543          4567777


Q ss_pred             EEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCC
Q 045233          182 LDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN  235 (325)
Q Consensus       182 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N  235 (325)
                      +.+.++.++.....+|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..+
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            777777777556667777777888777644 44344556777777777766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.51  E-value=0.00055  Score=62.17  Aligned_cols=134  Identities=13%  Similarity=0.052  Sum_probs=72.3

Q ss_pred             ccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCC
Q 045233           85 NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT  164 (325)
Q Consensus        85 ~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  164 (325)
                      .+....+|+.+.+  .. .+.......+.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++......|.++.
T Consensus       212 ~f~~~~~l~~i~~--~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          212 GFSYGKNLKKITI--TS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTCSSCSEEEC--CT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             ccccccccceeee--cc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence            3445555555555  21 222223344555666666666544 33233444555666666665432 3323334555666


Q ss_pred             CCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCC
Q 045233          165 NLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLS  225 (325)
Q Consensus       165 ~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  225 (325)
                      +|+.+.+..+           ++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.+++
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            6666665433           3456666676543 55455668888888888888654 4433344555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.43  E-value=0.0001  Score=60.66  Aligned_cols=59  Identities=10%  Similarity=0.075  Sum_probs=34.6

Q ss_pred             CCcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCc---CCC----CCCCcccCCCCCcEEEccCCC
Q 045233          178 NLTWLDISNNKIEGS----IPGELTELSRPDCLSLSANK---LSG----PVPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       178 ~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~---l~~----~~p~~~~~l~~L~~L~l~~N~  236 (325)
                      .|+.|+|++|.|...    +.+.+..-+.|+.|+|++|.   +..    .+...+...+.|+.|+++.|.
T Consensus        99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A           99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            345555555655532    23345555667888887542   221    133456667788889888765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.28  E-value=0.00055  Score=52.48  Aligned_cols=61  Identities=20%  Similarity=0.175  Sum_probs=48.1

Q ss_pred             cEEEccCCcCC-CCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          180 TWLDISNNKIE-GSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       180 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      ..++.++++++ ..+|..+  .++++.|+|++|+|+...+..|..+++|+.|+|++|++.|.--
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            36777888876 3455332  2368999999999997777888999999999999999998654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.25  E-value=0.0002  Score=58.91  Aligned_cols=114  Identities=12%  Similarity=0.075  Sum_probs=71.1

Q ss_pred             cCCCCCCCEEEeccccC-cCCC----CCcccccCCCcCCEEecccCCCCC----CCchhhcCCcccceeecccCcCCCcC
Q 045233           86 FSCFPNLESLRIQAYYY-GFTG----SIPSDISALSKLQLLDLSLNRLSG----TIPSNIGNLRNLVHLDLGNNNLTGPI  156 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n-~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~  156 (325)
                      +..-+.|+.|++  ++| .+..    .+.+.+..-+.|+.|+|++|.+..    .+.+.+..-+.|+.|+|++|.|....
T Consensus        37 l~~n~~L~~L~L--~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           37 REDDTDLKEVNI--NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HTTCSSCCEEEC--TTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HhcCCCccEEEC--CCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            445677888888  654 4432    133446666788888888888872    34455555677888888888887332


Q ss_pred             c----hhccCCCCCcEEEcCcCCCCCCcEEEccCC---cCCC----CCchhhhCCCCCCEEECCCCcCC
Q 045233          157 P----STLARLTNLKYLDLKVTSMKNLTWLDISNN---KIEG----SIPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       157 p----~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n---~l~~----~~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      -    +.+..-+             .|++|+|++|   .+..    .+.+.+..-+.|+.|+++.|.+.
T Consensus       115 a~ala~aL~~N~-------------tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          115 LARLLRSTLVTQ-------------SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHTTTTC-------------CCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhhCC-------------ceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            2    2233333             3566666654   3332    24456677789999999877543

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=97.21  E-value=6.3e-05  Score=66.74  Aligned_cols=40  Identities=13%  Similarity=0.072  Sum_probs=28.4

Q ss_pred             HHHHHhcCCcceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233          285 DLIEATEGFDYLIQFPKFESFALSFLFR---SSTGTFLIIIFY  324 (325)
Q Consensus       285 ~l~~~t~nf~~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~  324 (325)
                      |+...+-.|...||+|+||.||+|++..   ..+++.||||..
T Consensus        22 ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l   64 (308)
T 4gt4_A           22 EISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTL   64 (308)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEEC
T ss_pred             cCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEE
Confidence            3333444566889999999999999842   246789999975

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=97.20  E-value=0.00021  Score=63.29  Aligned_cols=44  Identities=16%  Similarity=0.213  Sum_probs=40.2

Q ss_pred             CccccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          278 DRSIVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       278 ~~~~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+++++.++..++++|.  ..||+|+||.||++..   .+|+.||||.+
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~---~~~~~vavK~~   62 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRL---ADGTLVAVKRL   62 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECC---SSSCCEEEEEC
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEe---cCCCEEEEEEe
Confidence            45799999999999997  8899999999999997   78999999975

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=97.08  E-value=0.00039  Score=61.74  Aligned_cols=45  Identities=13%  Similarity=0.011  Sum_probs=37.0

Q ss_pred             CccccHHHHHHHhcCC----------c--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          278 DRSIVYEDLIEATEGF----------D--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       278 ~~~~~~~~l~~~t~nf----------~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+.++++++.++++++          +  ..||+|+||.||+++..  .+|+.||||++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~--~~g~~vavK~~   78 (321)
T 2c30_A           22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREK--HSGRQVAVKMM   78 (321)
T ss_dssp             ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEEC--CCCcEEEEEEE
Confidence            3569999999999863          2  67999999999999984  68999999985

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=96.75  E-value=0.00031  Score=62.23  Aligned_cols=43  Identities=28%  Similarity=0.316  Sum_probs=36.0

Q ss_pred             ccccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          279 RSIVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       279 ~~~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .++.+.++..++++|.  ..||+|+||.||+|+.   .+|+.||||.+
T Consensus        27 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~---~~~~~vavK~~   71 (321)
T 2qkw_B           27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL---RDGAKVALKRR   71 (321)
T ss_dssp             ---CCSCCCCCCCCCSCCCCSCBCSSSEEEEEEC---TTCCEEEEEEC
T ss_pred             eeecHHHHHHHHhccCccceeecCCCeeEEEEEE---CCCCEEEEEEe
Confidence            4567778888999997  8899999999999998   78999999975

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.72  E-value=0.0027  Score=48.57  Aligned_cols=35  Identities=29%  Similarity=0.269  Sum_probs=15.2

Q ss_pred             CCEEecccCCCCCCCchhhcCCcccceeecccCcC
Q 045233          118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNL  152 (325)
Q Consensus       118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  152 (325)
                      |++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44444444444433333344444444444444443

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=96.66  E-value=0.001  Score=59.39  Aligned_cols=30  Identities=7%  Similarity=0.007  Sum_probs=23.8

Q ss_pred             ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|++.   ...+|+.||||..
T Consensus        47 ~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l   79 (329)
T 4aoj_A           47 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL   79 (329)
T ss_dssp             EEEEECSSEEEEEEEESSSCC---CEEEEEEEE
T ss_pred             EEEccCCCcEEEEEEECCcccCCCCeEEEEEEE
Confidence            78999999999999974   2246899999975

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=96.58  E-value=0.00027  Score=62.41  Aligned_cols=32  Identities=6%  Similarity=0.007  Sum_probs=27.5

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+|+..  .+|+.||||.+
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~--~~~~~vavK~~   90 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSK--EDGRLYAVKRS   90 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET--TTSCEEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEEC--CCCeEEEEEEe
Confidence            4454  78999999999999985  68999999975

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=96.55  E-value=0.0014  Score=57.43  Aligned_cols=30  Identities=17%  Similarity=0.004  Sum_probs=26.2

Q ss_pred             CcceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          293 FDYLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       293 f~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      |+..||+||||.||+|+-.  .+|+.||||.+
T Consensus        30 ~~~~iG~G~fg~Vy~a~~~--~~~~~vAiK~i   59 (290)
T 3fpq_A           30 FDIEIGRGSFKTVYKGLDT--ETTVEVAWCEL   59 (290)
T ss_dssp             EEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEEC--CCCeEEEEEEE
Confidence            4568999999999999875  78999999975

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=96.36  E-value=0.0014  Score=60.92  Aligned_cols=42  Identities=14%  Similarity=0.133  Sum_probs=35.4

Q ss_pred             ccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          281 IVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       281 ~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      +.+.++...+++|.  ..||+|+||.||+++..  .+|+.||||++
T Consensus        64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~--~~~~~vAvK~~  107 (437)
T 4aw2_A           64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLK--NADKVFAMKIL  107 (437)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred             chhhcccCChhheEEEEEEEeCCCEEEEEEEEc--CCCcEEEEEEE
Confidence            44666667788887  88999999999999995  67899999985

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=96.33  E-value=0.0027  Score=57.02  Aligned_cols=28  Identities=11%  Similarity=0.024  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        80 ~~iG~G~fG~V~~a~~~--~tg~~vAiK~i  107 (346)
T 4fih_A           80 IKIGEGSTGIVCIATVR--SSGKLVAVKKM  107 (346)
T ss_dssp             EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred             EEeecCcCeEEEEEEEC--CCCCEEEEEEE
Confidence            67999999999999985  78999999975

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=96.32  E-value=0.002  Score=57.06  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=27.7

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++-.  .+|+.||||++
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~--~~~~~~AiK~i   65 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLAREL--ATSREYAIKIL   65 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEEC--CCCCEEEEEEE
Confidence            4555  78999999999999875  78999999985

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=96.19  E-value=0.0022  Score=59.10  Aligned_cols=42  Identities=14%  Similarity=0.223  Sum_probs=35.4

Q ss_pred             ccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          281 IVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       281 ~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      +.+++....+++|.  ..||+|+||.||+++..  .+|+.||||++
T Consensus        51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~--~~~~~vAiK~l   94 (412)
T 2vd5_A           51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMK--QTGQVYAMKIM   94 (412)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred             hhhhhccCChhhEEEEEEEeeCCCeEEEEEEEC--CCCCEEEEEEE
Confidence            45566666778887  88999999999999985  78999999985

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=96.15  E-value=0.0031  Score=56.43  Aligned_cols=28  Identities=11%  Similarity=-0.206  Sum_probs=25.2

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        64 ~~lG~G~fG~Vy~a~~~--~~g~~vAiK~i   91 (336)
T 4g3f_A           64 PRVGRGSFGEVHRMKDK--QTGFQCAVKKV   91 (336)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             cEeccCCCeEEEEEEEC--CCCCEEEEEEE
Confidence            57999999999999975  78999999975

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=96.10  E-value=0.0038  Score=57.24  Aligned_cols=28  Identities=14%  Similarity=-0.091  Sum_probs=25.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||.+
T Consensus        60 ~~lG~G~fG~V~~a~~~--~t~~~vAiK~i   87 (398)
T 4b99_A           60 ETIGNGAYGVVSSARRR--LTGQQVAIKKI   87 (398)
T ss_dssp             EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred             EEEecccCeEEEEEEEC--CCCCEEEEEEE
Confidence            78999999999999875  78999999975

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=95.93  E-value=0.0054  Score=56.60  Aligned_cols=28  Identities=11%  Similarity=0.024  Sum_probs=25.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||.+
T Consensus       157 ~~iG~G~fG~V~~a~~~--~tg~~vAiK~i  184 (423)
T 4fie_A          157 IKIGEGSTGIVCIATVR--SSGKLVAVKKM  184 (423)
T ss_dssp             EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred             eEeccCcCcEEEEEEEC--CCCCEEEEEEE
Confidence            67999999999999985  78999999975

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=95.91  E-value=0.004  Score=54.99  Aligned_cols=26  Identities=8%  Similarity=-0.113  Sum_probs=21.7

Q ss_pred             cceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ...||+||||.||+|++     ...||||+.
T Consensus        41 ~~~iG~G~fG~Vy~~~~-----~~~vAvK~~   66 (307)
T 3omv_A           41 STRIGSGSFGTVYKGKW-----HGDVAVKIL   66 (307)
T ss_dssp             EEECCCCSSSEEEEEES-----SSEEEEEEC
T ss_pred             eeEEeeCCCcEEEEEEE-----CCcEEEEEE
Confidence            47899999999999998     235899874

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=95.82  E-value=0.0022  Score=57.52  Aligned_cols=44  Identities=7%  Similarity=0.033  Sum_probs=36.5

Q ss_pred             ccccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          279 RSIVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       279 ~~~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..+++.+.....++|.  ..||+|+||.||+++-.  .+|+.||||++
T Consensus        23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vavK~~   68 (360)
T 3llt_A           23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHI--DNKKYYAVKVV   68 (360)
T ss_dssp             GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             eeeeeecceEecCEEEEEEEEcccCCeEEEEEEEC--CCCeEEEEEEe
Confidence            3466666666677776  88999999999999985  78999999986

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=95.78  E-value=0.0055  Score=59.85  Aligned_cols=32  Identities=16%  Similarity=0.097  Sum_probs=28.0

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++-.  .+|+.||||++
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~--~tg~~~AiK~i  222 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKA--DTGKMYAMKCL  222 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEEC--CCCCEEEEEEE
Confidence            4465  78999999999999986  78999999985

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=95.77  E-value=0.0048  Score=56.83  Aligned_cols=40  Identities=20%  Similarity=0.165  Sum_probs=32.5

Q ss_pred             HHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          283 YEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       283 ~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      +.++...+++|.  ..||+|+||.||+++..  .+|+.||||++
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~--~~~~~~AiK~~  102 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK--STRKVYAMKLL  102 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEEC--CCCcEEEEEEE
Confidence            344445567776  88999999999999985  78999999975

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=95.72  E-value=0.0073  Score=55.07  Aligned_cols=27  Identities=11%  Similarity=-0.021  Sum_probs=25.6

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||.|++|.||+|.-   ++|+.||||+|
T Consensus       101 ~~IG~Gk~a~VY~a~d---~~G~~vAvKi~  127 (397)
T 4gyi_A          101 SRIGVGKESDIMIVAD---EKGKQKVLKIH  127 (397)
T ss_dssp             EEEEECSSEEEEEEEC---TTCCEEEEEEE
T ss_pred             CEeeeCCceEEEEEEC---CCCCEEEEEEE
Confidence            7899999999999998   78999999987

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=95.66  E-value=0.0064  Score=55.90  Aligned_cols=28  Identities=7%  Similarity=-0.108  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+||+||||.||+++-.  .+|+.||||++
T Consensus        84 ~~LG~G~fG~Vy~a~~~--~~g~~vAvK~~  111 (413)
T 3dzo_A           84 TVLGQEDPYAYLEATDQ--ETGESFEVHVP  111 (413)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             cccccCCCEEEEEEEec--CCCCceEEEEE
Confidence            78999999999999954  78999999986

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=95.35  E-value=0.011  Score=53.15  Aligned_cols=30  Identities=10%  Similarity=0.011  Sum_probs=24.4

Q ss_pred             ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+...   ..+++.||||..
T Consensus        70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l  102 (353)
T 4ase_A           70 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKML  102 (353)
T ss_dssp             EEEEECSSEEEEEEEEETSSSTTCEEEEEEEEE
T ss_pred             eEEecCCCeEEEEEEEcCCCcccCCeEEEEEEE
Confidence            789999999999999752   234578999975

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=95.30  E-value=0.013  Score=52.78  Aligned_cols=41  Identities=12%  Similarity=0.008  Sum_probs=32.5

Q ss_pred             cHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          282 VYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       282 ~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+.......++|.  ..||+|+||.||+++..  .+|+.||||++
T Consensus        85 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~--~~g~~vavK~~  127 (365)
T 2y7j_A           85 DWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHR--ATGHEFAVKIM  127 (365)
T ss_dssp             HHHHHHHHHHHEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             cchhhhhhhhhcccceEEecCCCEEEEEEEEC--CCCcEEEEEEE
Confidence            3444455566665  88999999999999994  58999999975

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=95.18  E-value=0.014  Score=52.13  Aligned_cols=33  Identities=6%  Similarity=-0.173  Sum_probs=27.8

Q ss_pred             hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+.|.  ..||+|+||.||+++..  .+++.||||++
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~~~~vavK~~   86 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQK--GTQKPYALKVL   86 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEEC--CCCcEEEEEEe
Confidence            34454  78999999999999985  67899999986

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=95.10  E-value=0.015  Score=51.41  Aligned_cols=45  Identities=16%  Similarity=0.042  Sum_probs=24.0

Q ss_pred             cccHHHHHHHhcCCc-----------ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          280 SIVYEDLIEATEGFD-----------YLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       280 ~~~~~~l~~~t~nf~-----------~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      ..+|.+...++..|.           ..||+|+||.||+|.... ...+..||||.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~   85 (325)
T 3kul_A           29 PHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKAL   85 (325)
T ss_dssp             --------------CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEE
T ss_pred             cccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEec
Confidence            456666666666553           779999999999999841 124556999975

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=95.06  E-value=0.012  Score=52.11  Aligned_cols=37  Identities=14%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             HHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          286 LIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       286 l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      +.+..++|.  ..||+|+||.||+++-.  .+++.||||++
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vaiK~~   59 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIEN--QTRAIRAIKIM   59 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEEC--CCCceEEEeeh
Confidence            445556665  78999999999999885  78999999986

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=94.97  E-value=0.015  Score=53.29  Aligned_cols=32  Identities=19%  Similarity=0.191  Sum_probs=27.4

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++..  .+|+.||||++
T Consensus        52 ~~y~~~~~LG~G~fG~V~~~~~~--~~~~~~AvK~~   85 (396)
T 4dc2_A           52 QDFDLLRVIGRGSYAKVLLVRLK--KTDRIYAMRVV   85 (396)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred             hHcEEEEEEeeCCCeEEEEEEEC--CCCCEEEEEEE
Confidence            3454  78999999999999985  78999999985

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=94.96  E-value=0.015  Score=51.62  Aligned_cols=28  Identities=11%  Similarity=0.013  Sum_probs=25.2

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+||+|+||.||+++-.  .+|+.||||++
T Consensus        35 ~~lG~G~~g~V~~~~~~--~~~~~vavK~~   62 (336)
T 3fhr_A           35 QVLGLGVNGKVLECFHR--RTGQKCALKLL   62 (336)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             eeeeeCCCeEEEEEEEC--CCCCEEEEEEe
Confidence            47999999999999985  68999999985

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=94.96  E-value=0.017  Score=49.31  Aligned_cols=29  Identities=14%  Similarity=0.008  Sum_probs=25.5

Q ss_pred             cceeecCCCcEEEEEeeecCCCCcE--EEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFRSSTGTF--LIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~~~~~~~--vav~~~  324 (325)
                      ...||.|+||.||++...  .+|+.  ||||+|
T Consensus        52 ~~~ig~G~~g~Vy~a~~~--~~g~~~~vAvK~~   82 (258)
T 1zth_A           52 GGVISTGKEANVFYADGV--FDGKPVAMAVKIY   82 (258)
T ss_dssp             EEEEEECSSEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred             CCEEeecceEEEEEEEEc--CCCcEeeEEEEEE
Confidence            378999999999999984  57989  999986

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=94.96  E-value=0.013  Score=51.13  Aligned_cols=35  Identities=9%  Similarity=0.018  Sum_probs=26.7

Q ss_pred             HHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          288 EATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       288 ~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ...++|.  ..||+|+||.||++.-.  .+|+.||||++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~~~vavK~~   64 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRL--TDRLQVAIKVI   64 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECT--TTCCEEEEEEC
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEc--cCCeEEEEEEE
Confidence            3445565  88999999999999875  78999999986

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=94.94  E-value=0.014  Score=52.91  Aligned_cols=34  Identities=12%  Similarity=0.136  Sum_probs=28.6

Q ss_pred             HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+++|.  ..||+|+||.||+++-.  .+|+.||||++
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vaiK~~   87 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDR--VEQEWVAIKII   87 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEET--TTTEEEEEEEE
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEc--CCCcEEEEEEE
Confidence            345564  78999999999999875  78999999986

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=94.86  E-value=0.019  Score=52.79  Aligned_cols=28  Identities=18%  Similarity=0.116  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++..  .+|+.||||.+
T Consensus        60 ~~lG~G~fg~Vy~~~~~--~~~~~vaiK~~   87 (420)
T 1j1b_A           60 KVIGNGSFGVVYQAKLC--DSGELVAIKKV   87 (420)
T ss_dssp             EEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             eEEeeCCCEEEEEEEEC--CCCcEEEEEEe
Confidence            78999999999999995  67999999975

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=94.85  E-value=0.018  Score=50.76  Aligned_cols=31  Identities=10%  Similarity=0.001  Sum_probs=24.8

Q ss_pred             cceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      -..||+|+||.||+++-.. ..+++.||||++
T Consensus        29 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i   60 (304)
T 3ubd_A           29 LKVLGQGSFGKVFLVKKISGSDARQLYAMKVL   60 (304)
T ss_dssp             EEEEECGGGCEEEEEEECSSTTTTCEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEEccCCCCCEEEEEEEE
Confidence            3689999999999997521 246899999975

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=94.82  E-value=0.02  Score=49.65  Aligned_cols=28  Identities=7%  Similarity=-0.128  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        37 ~~lg~G~~g~Vy~a~~~--~~~~~vavK~~   64 (286)
T 3uqc_A           37 IFHGGVPPLQFWQALDT--ALDRQVALTFV   64 (286)
T ss_dssp             EEEEBSTTCEEEEEEET--TTTEEEEEEES
T ss_pred             EEEcccCCeEEEEEEec--CCCceEEEEEE
Confidence            68999999999999985  67999999986

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=94.82  E-value=0.017  Score=52.12  Aligned_cols=28  Identities=7%  Similarity=-0.108  Sum_probs=25.1

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++..  .+|+.||||++
T Consensus        79 ~~lG~G~~g~V~~a~~~--~~~~~vavK~~  106 (377)
T 3byv_A           79 TVLGQEDPYAYLEATDQ--ETGESFEVHVP  106 (377)
T ss_dssp             EEEEEETTEEEEEEEC---CCCCEEEEEEE
T ss_pred             ceeecCCCEEEEEEEEC--CCCcEEEEEEE
Confidence            78999999999999975  78999999986

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=94.82  E-value=0.02  Score=51.85  Aligned_cols=32  Identities=16%  Similarity=0.158  Sum_probs=27.5

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++..  .+|+.||||++
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~--~~~~~~AiK~~   71 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHK--AEEVFYAVKVL   71 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEET--TTCCEEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEc--CCCCEEEEEEE
Confidence            3454  78999999999999985  78999999985

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=94.79  E-value=0.022  Score=49.39  Aligned_cols=27  Identities=11%  Similarity=-0.073  Sum_probs=25.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++..   .+|+.||||++
T Consensus        96 ~~iG~G~~g~Vy~~~~---~~g~~valK~~  122 (282)
T 1zar_A           96 KLMGEGKESAVFNCYS---EKFGECVVKFH  122 (282)
T ss_dssp             EEEEECSSEEEEEEEE---TTTEEEEEEEE
T ss_pred             CEeccCCCceEEEEEe---CCCCEEEEEEE
Confidence            7899999999999998   88999999986

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=94.74  E-value=0.023  Score=51.68  Aligned_cols=27  Identities=7%  Similarity=-0.111  Sum_probs=24.8

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++..   .+|+.||||++
T Consensus        62 ~~LG~G~fg~Vy~~~~---~~~~~vaiK~~   88 (390)
T 2zmd_A           62 KQIGSGGSSKVFQVLN---EKKQIYAIKYV   88 (390)
T ss_dssp             EEEECCSSEEEEEEEC---TTCCEEEEEEE
T ss_pred             EEEccCCCeEEEEEEc---CCCCEEEEEEE
Confidence            7899999999999998   67999999975

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=94.72  E-value=0.026  Score=51.90  Aligned_cols=33  Identities=12%  Similarity=0.016  Sum_probs=28.1

Q ss_pred             hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .++|.  ..||+|+||.||++.-.  .+|+.||||++
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~--~~~~~vavK~~  168 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFER--KTCKKVAIRII  168 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEET--TTCCEEEEEEE
T ss_pred             hccEEEEeEEeeCCCeEEEEEEEC--CCCcEEEEEEE
Confidence            45554  78999999999999985  78899999985

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=94.69  E-value=0.022  Score=51.29  Aligned_cols=28  Identities=4%  Similarity=-0.162  Sum_probs=25.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        68 ~~lG~G~~g~V~~~~~~--~~~~~vavK~~   95 (371)
T 3q60_A           68 EPLRVGDRSVVFLVRDV--ERLEDFALKVF   95 (371)
T ss_dssp             EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred             eeccCCCCEEEEEEEEC--CCCceeEEEEE
Confidence            78999999999999974  78999999986

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=94.67  E-value=0.018  Score=52.00  Aligned_cols=28  Identities=14%  Similarity=-0.004  Sum_probs=25.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+..  .+|+.||||.+
T Consensus       120 ~~lG~G~~g~V~~~~~~--~~~~~vavK~~  147 (377)
T 3cbl_A          120 EQIGRGNFGEVFSGRLR--ADNTLVAVKSC  147 (377)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEC
T ss_pred             eEeccCCCCeEEEEEEe--cCCeEEEEEEc
Confidence            78999999999999995  68999999975

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=94.66  E-value=0.015  Score=52.52  Aligned_cols=30  Identities=13%  Similarity=0.001  Sum_probs=24.1

Q ss_pred             ceeecCCCcEEEEEeee-cCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLF-RSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~-~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+.. ...+++.||||.+
T Consensus        51 ~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~   81 (373)
T 2qol_A           51 KVVGAGEFGEVCSGRLKLPSKKEISVAIKTL   81 (373)
T ss_dssp             EEEEECSSSEEEEC-CBCTTSCBCCEEEEEC
T ss_pred             eEEeeCCCeEEEEEEEecCCCCceeEEEEEe
Confidence            78999999999999883 2246889999975

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=94.65  E-value=0.022  Score=50.09  Aligned_cols=28  Identities=18%  Similarity=0.001  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||.+
T Consensus        49 ~~lg~G~~g~Vy~~~~~--~~~~~vavK~~   76 (320)
T 3a99_A           49 PLLGSGGFGSVYSGIRV--SDNLPVAIKHV   76 (320)
T ss_dssp             EECSSSSSCEEEEEEET--TTTEEEEEEEE
T ss_pred             EEEeeCCCeEEEEEEEC--CCCcEEEEEEE
Confidence            78999999999999864  78999999986

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=94.46  E-value=0.024  Score=50.05  Aligned_cols=28  Identities=21%  Similarity=0.069  Sum_probs=25.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        35 ~~lG~G~~g~V~~~~~~--~~~~~vavK~~   62 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISK--STGQEYAAKFL   62 (327)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             ceeCCCCCeEEEEEEEC--CCCCEEEEEEE
Confidence            67999999999999985  78999999986

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=94.44  E-value=0.026  Score=52.08  Aligned_cols=28  Identities=7%  Similarity=0.065  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++.-.  .+|+.||||++
T Consensus       103 ~~LG~G~fg~V~~a~~~--~~~~~vAvK~~  130 (429)
T 3kvw_A          103 KVIGKGSFGQVVKAYDH--KVHQHVALKMV  130 (429)
T ss_dssp             EEEEESSSEEEEEEEET--TTTEEEEEEEE
T ss_pred             EEcccCccEEEEEEEEC--CCCcEEEEEEE
Confidence            78999999999999875  67999999986

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=94.39  E-value=0.028  Score=50.39  Aligned_cols=28  Identities=11%  Similarity=0.049  Sum_probs=25.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        47 ~~lG~G~~g~V~~~~~~--~~~~~~aiK~~   74 (350)
T 1rdq_E           47 KTLGTGSFGRVMLVKHK--ESGNHYAMKIL   74 (350)
T ss_dssp             EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred             EEeecCcCcEEEEEEEC--CCCCEEEEEEE
Confidence            78999999999999985  68999999985

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=94.38  E-value=0.027  Score=49.52  Aligned_cols=28  Identities=4%  Similarity=0.036  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        42 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~   69 (330)
T 3nsz_A           42 RKLGRGKYSEVFEAINI--TNNEKVVVKIL   69 (330)
T ss_dssp             EEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             EEecccCCeEEEEEEEC--CCCcEEEEEEe
Confidence            78999999999999865  78999999986

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=94.37  E-value=0.029  Score=50.16  Aligned_cols=28  Identities=11%  Similarity=-0.020  Sum_probs=25.2

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||.+
T Consensus        60 ~~lG~G~~g~Vy~a~~~--~~~~~vaiK~~   87 (348)
T 1u5q_A           60 REIGHGSFGAVYFARDV--RNSEVVAIKKM   87 (348)
T ss_dssp             EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred             eEEccCCCEEEEEEEEc--cCCeEEEEEEE
Confidence            67999999999999964  78999999975

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=94.37  E-value=0.023  Score=52.64  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=27.4

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++-.  .+|+.||||++
T Consensus       148 ~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vaiK~~  181 (446)
T 4ejn_A          148 NEFEYLKLLGKGTFGKVILVKEK--ATGRYYAMKIL  181 (446)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             HHcEEeEEEeeCcCEEEEEEEEc--CCCCEEEEEEE
Confidence            4454  78999999999999975  78999999975

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=94.35  E-value=0.03  Score=52.05  Aligned_cols=27  Identities=7%  Similarity=-0.020  Sum_probs=24.9

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+.   .+++.||||.+
T Consensus       194 ~~lG~G~fg~V~~~~~---~~~~~vavK~~  220 (454)
T 1qcf_A          194 KKLGAGQFGEVWMATY---NKHTKVAVKTM  220 (454)
T ss_dssp             EEEECCSSEEEEEEEE---TTTEEEEEEEE
T ss_pred             EEcccCCceEEEEEEE---CCccEEEEEEe
Confidence            7899999999999999   78899999975

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=94.35  E-value=0.025  Score=54.43  Aligned_cols=32  Identities=16%  Similarity=0.087  Sum_probs=27.5

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++-.  .+|+.||||++
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~--~tg~~~AiK~i  190 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTER--ATGNNFAAKFV  190 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             cccEEEEEEeeccCeEEEEEEEC--CCCCEEEEEEE
Confidence            4454  78999999999999985  78999999975

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=94.34  E-value=0.034  Score=48.56  Aligned_cols=27  Identities=7%  Similarity=-0.111  Sum_probs=24.9

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++.   .+|+.||||.+
T Consensus        34 ~~lg~G~~g~Vy~~~~---~~~~~vavK~~   60 (313)
T 3cek_A           34 KQIGSGGSSKVFQVLN---EKKQIYAIKYV   60 (313)
T ss_dssp             EEEECCSSEEEEEEEC---TTCCEEEEEEE
T ss_pred             EEecCCCCEEEEEEEc---CCCcEEEEEEe
Confidence            6899999999999998   78999999985

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=94.30  E-value=0.03  Score=50.50  Aligned_cols=28  Identities=14%  Similarity=0.216  Sum_probs=25.3

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        43 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~   70 (397)
T 1wak_A           43 RKLGWGHFSTVWLSWDI--QGKKFVAMKVV   70 (397)
T ss_dssp             EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred             EEeeecCCeeEEEEEec--CCCeEEEEEEE
Confidence            78999999999999864  78999999986

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=94.24  E-value=0.033  Score=49.85  Aligned_cols=34  Identities=15%  Similarity=0.226  Sum_probs=27.3

Q ss_pred             cCCc--ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++... ..+|+.||||++
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~   90 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVL   90 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEE
Confidence            4454  789999999999998731 247999999986

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=94.24  E-value=0.026  Score=50.60  Aligned_cols=30  Identities=7%  Similarity=-0.072  Sum_probs=23.3

Q ss_pred             ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+..   ...+|+.||||++
T Consensus        71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~  103 (365)
T 3e7e_A           71 HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQ  103 (365)
T ss_dssp             EEEEECSSEEEEEEEC-------CCCCEEEEEE
T ss_pred             EEeeccCCEEEEEEEecCCcccccCcEEEEEEe
Confidence            78999999999999531   1278999999985

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=94.18  E-value=0.031  Score=53.36  Aligned_cols=28  Identities=11%  Similarity=0.013  Sum_probs=25.6

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++..  .+|+.||||++
T Consensus       191 ~~LG~G~fG~Vy~a~~~--~tg~~vAiK~l  218 (543)
T 3c4z_A          191 RVLGRGGFGEVFACQMK--ATGKLYACKKL  218 (543)
T ss_dssp             EEEEECSSSEEEEEEET--TTCCEEEEEEE
T ss_pred             EEEeeCCCeEEEEEEEC--CCCcEEEEEEE
Confidence            78999999999999985  68999999986

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=94.11  E-value=0.026  Score=51.01  Aligned_cols=28  Identities=14%  Similarity=-0.012  Sum_probs=20.2

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++..  .+|+.||||++
T Consensus        95 ~~lG~G~~g~Vy~a~~~--~~g~~vavK~~  122 (373)
T 2x4f_A           95 EILGGGRFGQVHKCEET--ATGLKLAAKII  122 (373)
T ss_dssp             EECC-----CEEEEEET--TTCCEEEEEEE
T ss_pred             eEEecCcCEEEEEEEEc--CCCcEEEEEEE
Confidence            57999999999999985  78999999986

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=94.09  E-value=0.038  Score=48.42  Aligned_cols=26  Identities=12%  Similarity=0.028  Sum_probs=23.7

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++.    +|+.||||++
T Consensus        43 ~~lG~G~~g~V~~~~~----~~~~vavK~~   68 (309)
T 3p86_A           43 EKIGAGSFGTVHRAEW----HGSDVAVKIL   68 (309)
T ss_dssp             EEEEECSSEEEEEEEE----TTEEEEEEEE
T ss_pred             eEeecCCCeEEEEEEE----CCCcEEEEEe
Confidence            7899999999999987    5899999986

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=94.02  E-value=0.029  Score=53.90  Aligned_cols=32  Identities=13%  Similarity=0.094  Sum_probs=27.5

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++..  .+|+.||||.+
T Consensus       184 ~~f~~~~~LG~G~fG~Vy~a~~~--~tg~~vAvK~l  217 (576)
T 2acx_A          184 NTFRQYRVLGKGGFGEVCACQVR--ATGKMYACKKL  217 (576)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             cceEEEEEEeeCCCEEEEEEEEC--CCCCEEEEEEE
Confidence            3454  78999999999999985  78999999985

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=94.02  E-value=0.037  Score=49.81  Aligned_cols=28  Identities=11%  Similarity=-0.028  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++.-.  .+|+.||||.+
T Consensus        48 ~~lG~G~~g~Vy~~~~~--~~~~~vaiK~~   75 (371)
T 4exu_A           48 THVGSGAYGSVCSAIDK--RSGEKVAIKKL   75 (371)
T ss_dssp             EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred             eEEecCCCeEEEEEEEC--CCCCEEEEEEe
Confidence            78999999999999875  78999999986

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=94.02  E-value=0.037  Score=49.45  Aligned_cols=28  Identities=4%  Similarity=-0.237  Sum_probs=25.6

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++...  .+|+.||||++
T Consensus        39 ~~lg~G~~g~V~~~~~~--~~~~~va~K~~   66 (360)
T 3eqc_A           39 SELGAGNGGVVFKVSHK--PSGLVMARKLI   66 (360)
T ss_dssp             EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred             eeecCCCCeEEEEEEEC--CCCcEEEEEEe
Confidence            68999999999999985  78999999985

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=94.01  E-value=0.043  Score=48.14  Aligned_cols=28  Identities=7%  Similarity=-0.104  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||.+
T Consensus        34 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~   61 (337)
T 3ll6_A           34 RVLAEGGFAFVYEAQDV--GSGREYALKRL   61 (337)
T ss_dssp             EEEECCSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             EEEccCCceEEEEEEEC--CCCcEEEEEEe
Confidence            78999999999999974  78999999975

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=93.99  E-value=0.037  Score=47.69  Aligned_cols=29  Identities=14%  Similarity=-0.077  Sum_probs=25.5

Q ss_pred             cceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ...||+|+||.||+|.-.  .++..||||.+
T Consensus        31 ~~~lg~G~~g~Vy~~~~~--~~~~~va~k~~   59 (290)
T 1t4h_A           31 DIEIGRGSFKTVYKGLDT--ETTVEVAWCEL   59 (290)
T ss_dssp             EEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred             eeeccCCCCeEEEEeEec--CCceEEEEEEe
Confidence            357999999999999885  78899999975

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=93.96  E-value=0.034  Score=50.77  Aligned_cols=28  Identities=7%  Similarity=-0.069  Sum_probs=25.2

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++.-.  .+|+.||||++
T Consensus        68 ~~LG~G~~g~V~~~~~~--~~~~~vAiK~~   95 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNK--RTQEKFALKML   95 (400)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             ceeeeccCeEEEEEEEC--CCCCEEEEEEe
Confidence            57999999999999985  78999999975

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=93.95  E-value=0.027  Score=50.62  Aligned_cols=34  Identities=12%  Similarity=0.057  Sum_probs=28.5

Q ss_pred             HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..++|.  ..||+|+||.||+++-.  .+|+.||||++
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~~avK~~   62 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHK--TTGLEFAAKII   62 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             cccCeEEeeEEecCCCeEEEEEEEC--CCCCEEEEEEE
Confidence            345554  78999999999999985  78999999986

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=93.94  E-value=0.035  Score=49.03  Aligned_cols=34  Identities=6%  Similarity=-0.054  Sum_probs=28.3

Q ss_pred             HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..++|.  ..||+|+||.||+++-.  .+|+.||||.+
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~~vaiK~~   67 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDT--VTNETVAIKRI   67 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEET--TTTEEEEEEEC
T ss_pred             chhhEEEEEEEEecCCeEEEEEEEC--CCCceEEEEEE
Confidence            344554  78999999999999864  78999999986

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=93.92  E-value=0.031  Score=54.83  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=27.7

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++..  .+|+.||||++
T Consensus       341 ~~f~~~~~LG~G~fG~V~~~~~~--~~~~~vAvK~l  374 (674)
T 3pfq_A          341 TDFNFLMVLGKGSFGKVMLSERK--GTDELYAVKIL  374 (674)
T ss_dssp             TTEEEEEESSBTTTBCEEEEEES--SSCCEEEEEEE
T ss_pred             cceEEEEEEccCCCEEEEEEEEC--CCCcEEEEEEE
Confidence            4554  78999999999999986  78999999985

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=93.92  E-value=0.03  Score=50.44  Aligned_cols=30  Identities=3%  Similarity=-0.122  Sum_probs=24.1

Q ss_pred             ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++..   ...+++.||||.+
T Consensus        77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~  109 (367)
T 3l9p_A           77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTL  109 (367)
T ss_dssp             EECCCCSSSCEEEEEECC-----CCEEEEEEEC
T ss_pred             eEeeeCCCEEEEEEEEccCCCCCcceeEEEEec
Confidence            78999999999999964   1256789999985

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=93.91  E-value=0.045  Score=47.61  Aligned_cols=28  Identities=11%  Similarity=-0.046  Sum_probs=23.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++...  .+|+.||||.+
T Consensus        38 ~~lg~G~~g~Vy~~~~~--~~~~~vavK~~   65 (310)
T 2wqm_A           38 KKIGRGQFSEVYRAACL--LDGVPVALKKV   65 (310)
T ss_dssp             EEEECC--CEEEEEEET--TTCCEEEEEEE
T ss_pred             EeecCCCCceEEEEEEc--CCCceEEEEee
Confidence            78999999999999975  78999999976

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=93.82  E-value=0.038  Score=50.26  Aligned_cols=28  Identities=14%  Similarity=0.080  Sum_probs=25.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|++||+|++
T Consensus        57 ~~LG~G~~g~Vy~~~~~--~~~~~~a~K~~   84 (387)
T 1kob_A           57 EELGSGAFGVVHRCVEK--ATGRVFVAKFI   84 (387)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             EEEecCCCEEEEEEEEC--CCCCEEEEEEe
Confidence            78999999999999985  78999999986

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=93.81  E-value=0.036  Score=48.32  Aligned_cols=32  Identities=22%  Similarity=0.130  Sum_probs=22.8

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      +.|.  ..||+|+||.||+++..  .+|+.||||.+
T Consensus        29 ~~y~~~~~lg~G~~g~Vy~~~~~--~~~~~vaiK~~   62 (314)
T 3com_A           29 EVFDVLEKLGEGSYGSVYKAIHK--ETGQIVAIKQV   62 (314)
T ss_dssp             -CEEEEEECC----CEEEEEEET--TTCCEEEEEEE
T ss_pred             hhhhhheeeccCCCeEEEEEEEC--CCCCEEEEEec
Confidence            4454  78999999999999985  67999999976

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=93.73  E-value=0.046  Score=48.33  Aligned_cols=44  Identities=18%  Similarity=0.055  Sum_probs=23.4

Q ss_pred             ccHHHHHHHhcCCc-----------ceeecCCCcEEEEEeeecC--CCCcEEEEEEe
Q 045233          281 IVYEDLIEATEGFD-----------YLIQFPKFESFALSFLFRS--STGTFLIIIFY  324 (325)
Q Consensus       281 ~~~~~l~~~t~nf~-----------~~ig~g~~g~vy~g~l~~~--~~~~~vav~~~  324 (325)
                      ..+.+...++..|.           ..||+|+||.||+|+....  ..+..||||.+
T Consensus        25 ~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~   81 (333)
T 1mqb_A           25 AMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTL   81 (333)
T ss_dssp             -------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEE
T ss_pred             cccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEc
Confidence            34455555555553           6799999999999998521  22456999975

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=93.70  E-value=0.04  Score=48.43  Aligned_cols=32  Identities=6%  Similarity=0.100  Sum_probs=26.8

Q ss_pred             HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..++|.  ..||+|+||.||+|+.    +|+.||||++
T Consensus        35 ~~~~y~~~~~lg~G~~g~V~~~~~----~~~~vavK~~   68 (337)
T 3mdy_A           35 IAKQIQMVKQIGKGRYGEVWMGKW----RGEKVAVKVF   68 (337)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEE----TTEEEEEEEE
T ss_pred             cccceEEEeEeecCCCeEEEEEEE----CCceEEEEEE
Confidence            345554  8899999999999988    3999999986

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=93.68  E-value=0.028  Score=52.20  Aligned_cols=28  Identities=11%  Similarity=-0.028  Sum_probs=16.7

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||.+
T Consensus        59 ~~lG~G~~g~V~~~~~~--~~~~~vaiK~i   86 (458)
T 3rp9_A           59 HLIGTGSYGHVCEAYDK--LEKRVVAIKKI   86 (458)
T ss_dssp             CC-------CEEEEEEC--C--CEEEEEEE
T ss_pred             eEeeecCCeEEEEEEEC--CCCcEEEEEEe
Confidence            78999999999999875  78999999975

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=93.60  E-value=0.049  Score=48.77  Aligned_cols=33  Identities=6%  Similarity=-0.086  Sum_probs=27.5

Q ss_pred             hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .+.|.  ..||+|+||.||++.-.  .+|+.||||.+
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vaiK~~   60 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDN--LNKVRVAIKKI   60 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred             cccEEEEEEeecCCCeEEEEEEEC--CCCeEEEEEEe
Confidence            34444  78999999999999875  78999999986

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=93.51  E-value=0.055  Score=47.74  Aligned_cols=35  Identities=9%  Similarity=-0.084  Sum_probs=27.5

Q ss_pred             hcCCc--ceeecCCCcEEEEEeeecC---CCCcEEEEEEe
Q 045233          290 TEGFD--YLIQFPKFESFALSFLFRS---STGTFLIIIFY  324 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~~~---~~~~~vav~~~  324 (325)
                      .++|.  ..||+|+||.||+++....   .+++.||||++
T Consensus        46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~   85 (343)
T 1luf_A           46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKML   85 (343)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEEC
T ss_pred             HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEe
Confidence            45554  7899999999999998521   45699999986

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=93.47  E-value=0.055  Score=50.22  Aligned_cols=27  Identities=11%  Similarity=-0.077  Sum_probs=24.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+.   .+++.||||.+
T Consensus       190 ~~lG~G~fg~Vy~~~~---~~~~~vavK~~  216 (452)
T 1fmk_A          190 VKLGQGCFGEVWMGTW---NGTTRVAIKTL  216 (452)
T ss_dssp             EEEEECSSCEEEEEEE---TTTEEEEEEEC
T ss_pred             eeecCCCCeEEEEEEE---CCCceEEEEEe
Confidence            7899999999999999   67788999975

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=93.45  E-value=0.057  Score=47.09  Aligned_cols=28  Identities=14%  Similarity=0.030  Sum_probs=23.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||.+
T Consensus        35 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~   62 (317)
T 2buj_A           35 QKLGEGGFSYVDLVEGL--HDGHFYALKRI   62 (317)
T ss_dssp             EEEEC--CEEEEEEEET--TTCCEEEEEEE
T ss_pred             EEecCCCCeEEEEEEec--CCCcEEEEEEE
Confidence            78999999999999975  78999999975

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=93.41  E-value=0.057  Score=46.87  Aligned_cols=26  Identities=8%  Similarity=-0.003  Sum_probs=23.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+.    +++.||||.+
T Consensus        37 ~~lg~G~~g~Vy~~~~----~~~~vavK~~   62 (307)
T 2nru_A           37 NKMGEGGFGVVYKGYV----NNTTVAVKKL   62 (307)
T ss_dssp             CEEEECSSEEEEEEES----SSCEEEEEEE
T ss_pred             CccccCCCeEEEEEEE----CCceEEEEEE
Confidence            7899999999999987    5889999975

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=93.39  E-value=0.057  Score=47.11  Aligned_cols=28  Identities=4%  Similarity=-0.139  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        40 ~~lg~G~~g~Vy~~~~~--~~~~~vaiK~~   67 (309)
T 2h34_A           40 RLVGRGGMGDVYEAEDT--VRERIVALKLM   67 (309)
T ss_dssp             EEEEECSSSEEEEEEET--TTTEEEEEEEC
T ss_pred             EEEcCCCCeeEEEEEEc--CCCeEEEEEec
Confidence            78999999999999974  68999999986

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=93.37  E-value=0.043  Score=47.74  Aligned_cols=35  Identities=9%  Similarity=0.048  Sum_probs=27.6

Q ss_pred             hcCCc--ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233          290 TEGFD--YLIQFPKFESFALSFLFR---SSTGTFLIIIFY  324 (325)
Q Consensus       290 t~nf~--~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~  324 (325)
                      .++|.  ..||+|+||.||+++...   ..+|+.||||++
T Consensus        26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~   65 (316)
T 2xir_A           26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKML   65 (316)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEE
T ss_pred             hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEec
Confidence            44554  789999999999998532   367799999986

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=93.36  E-value=0.044  Score=50.52  Aligned_cols=28  Identities=18%  Similarity=0.019  Sum_probs=25.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||.+
T Consensus        32 ~~lG~G~~g~V~~a~~~--~~~~~vAiK~~   59 (432)
T 3n9x_A           32 HLIGRGSYGYVYLAYDK--NTEKNVAIKKV   59 (432)
T ss_dssp             EEEEEETTEEEEEEEET--TTTEEEEEEEE
T ss_pred             EEEeecCCEEEEEEEEC--CCCcEEEEEEe
Confidence            78999999999999975  78999999976

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=93.30  E-value=0.041  Score=49.60  Aligned_cols=28  Identities=14%  Similarity=0.053  Sum_probs=21.3

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++.-.  .+|+.||||.+
T Consensus        35 ~~lG~G~~g~V~~a~~~--~~~~~vaiK~~   62 (367)
T 2fst_X           35 SPVGSGAYGSVCAAFDT--KTGLRVAVKKL   62 (367)
T ss_dssp             EECC----CCEEEEEET--TTTEEEEEEEC
T ss_pred             eEEeecCCeEEEEEEEC--CCCCEEEEEEe
Confidence            68999999999999864  78999999985

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=93.26  E-value=0.054  Score=47.88  Aligned_cols=28  Identities=7%  Similarity=-0.203  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||+|++
T Consensus        47 ~~lg~G~~g~Vy~~~~~--~~~~~~a~K~~   74 (335)
T 2owb_A           47 RFLGKGGFAKCFEISDA--DTKEVFAGKIV   74 (335)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             EEEeeCCCeEEEEEEEC--CCCCEEEEEEe
Confidence            78999999999999985  77899999985

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=93.16  E-value=0.06  Score=52.15  Aligned_cols=29  Identities=10%  Similarity=-0.041  Sum_probs=24.7

Q ss_pred             eeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          296 LIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       296 ~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      .||+|+||.||+|+.....+++.||||++
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~  371 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVL  371 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEEC
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEc
Confidence            69999999999999854456788999985

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=93.16  E-value=0.065  Score=49.98  Aligned_cols=28  Identities=7%  Similarity=-0.211  Sum_probs=25.2

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++.-.  .+|+.||||.+
T Consensus        68 ~~lG~G~~g~V~~a~~~--~~~~~vAiK~~   95 (464)
T 3ttj_A           68 KPIGSGAQGIVCAAYDA--VLDRNVAIKKL   95 (464)
T ss_dssp             EEEEECSSCEEEEEEET--TTTEEEEEEEE
T ss_pred             EEeecCCCeEEEEEEEC--CCCCEEEEEEE
Confidence            78999999999999875  78999999986

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=93.12  E-value=0.065  Score=49.67  Aligned_cols=26  Identities=15%  Similarity=0.084  Sum_probs=23.7

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+.    +|+.||||.+
T Consensus       199 ~~lG~G~fg~V~~~~~----~~~~vavK~~  224 (450)
T 1k9a_A          199 QTIGKGEFGDVMLGDY----RGNKVAVKCI  224 (450)
T ss_dssp             EEEEECSSEEEEEEEE----TTEEEEEEEE
T ss_pred             eeecCcCCeeEEEEEe----cCCeEEEEEe
Confidence            7899999999999998    3889999975

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=93.11  E-value=0.075  Score=46.55  Aligned_cols=30  Identities=13%  Similarity=0.079  Sum_probs=24.0

Q ss_pred             ceeecCCCcEEEEEeee--cCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLF--RSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~--~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++...  ...+|+.||||++
T Consensus        37 ~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~   68 (318)
T 3lxp_A           37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKAL   68 (318)
T ss_dssp             EEEEECSSEEEEEEEECSCC--CCEEEEEEEE
T ss_pred             heecCCCCeEEEEEEEccCCCCCCcEEEEEEe
Confidence            68999999999998763  2358899999986

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=93.01  E-value=0.061  Score=47.43  Aligned_cols=32  Identities=9%  Similarity=0.011  Sum_probs=26.9

Q ss_pred             HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..++|.  ..||+|+||.||+++.    +|+.||||.+
T Consensus        40 ~~~~y~~~~~lg~G~~g~Vy~~~~----~~~~vavK~~   73 (342)
T 1b6c_B           40 IARTIVLQESIGKGRFGEVWRGKW----RGEEVAVKIF   73 (342)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEE----TTEEEEEEEE
T ss_pred             ccccEEEEeeecCCCCcEEEEEEE----cCccEEEEEe
Confidence            344554  8899999999999988    4999999986

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=92.97  E-value=0.07  Score=50.20  Aligned_cols=28  Identities=7%  Similarity=-0.168  Sum_probs=23.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        42 ~~lG~G~~g~V~~~~~~--~~~~~~aiK~~   69 (504)
T 3q5i_A           42 RKLGSGAYGEVLLCKEK--NGHSEKAIKVI   69 (504)
T ss_dssp             EEEEC--CEEEEEEEET--TTCCEEEEEEE
T ss_pred             eEecccCCeEEEEEEEC--CCCcEEEEEEE
Confidence            78999999999999985  67899999985

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=92.93  E-value=0.073  Score=50.57  Aligned_cols=27  Identities=11%  Similarity=-0.077  Sum_probs=24.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+.   .+++.||||.+
T Consensus       273 ~~lG~G~fg~Vy~~~~---~~~~~vavK~~  299 (535)
T 2h8h_A          273 VKLGQGCFGEVWMGTW---NGTTRVAIKTL  299 (535)
T ss_dssp             EEEEECSSEEEEEEEE---TTTEEEEEEEE
T ss_pred             eecccCCCeEEEEEEE---CCCceEEEEEe
Confidence            7899999999999999   67788999986

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=92.91  E-value=0.051  Score=48.67  Aligned_cols=30  Identities=13%  Similarity=0.020  Sum_probs=23.2

Q ss_pred             ceeecCCCcEEEEEeeecC---CCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRS---STGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~---~~~~~vav~~~  324 (325)
                      ..||+|+||.||++.....   ..++.||||+.
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~   73 (364)
T 3op5_A           41 LPIGQGGFGCIYLADMNSSESVGSDAPCVVKVE   73 (364)
T ss_dssp             EECCCC-CCEEEEEEECCSSCCCTTCSEEEEEE
T ss_pred             EEEecCCCeEEEEeeecCccccccccceEEEEe
Confidence            7899999999999988411   23689999974

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=92.76  E-value=0.074  Score=51.74  Aligned_cols=30  Identities=3%  Similarity=-0.024  Sum_probs=24.9

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|......+++.||||.+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~  404 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKIL  404 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEe
Confidence            479999999999997743456789999975

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=92.75  E-value=0.069  Score=48.08  Aligned_cols=30  Identities=3%  Similarity=-0.043  Sum_probs=24.4

Q ss_pred             ceeecCCCcEEEEEeeec-----CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR-----SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~-----~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++...     ..+++.||||++
T Consensus        87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~  121 (370)
T 2psq_A           87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKML  121 (370)
T ss_dssp             EEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEEC
T ss_pred             eEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEe
Confidence            789999999999998641     245678999985

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=92.73  E-value=0.06  Score=47.31  Aligned_cols=30  Identities=3%  Similarity=-0.122  Sum_probs=21.0

Q ss_pred             ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++..   ...+|+.||||.+
T Consensus        36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~   68 (327)
T 2yfx_A           36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTL   68 (327)
T ss_dssp             EECC--CSSCEEEEEC--------CCEEEEEEC
T ss_pred             EEEcCCCCeeEEEEEEcCCCCCCccceEEEEEe
Confidence            78999999999999963   1257889999986

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=92.70  E-value=0.069  Score=49.87  Aligned_cols=28  Identities=14%  Similarity=-0.025  Sum_probs=25.6

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        32 ~~lg~G~~g~V~~~~~~--~~~~~~avK~~   59 (484)
T 3nyv_A           32 RVLGKGSFGEVILCKDK--ITGQECAVKVI   59 (484)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             eEEecCCCEEEEEEEEC--CCCCEEEEEEE
Confidence            78999999999999985  68999999986

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=92.61  E-value=0.091  Score=46.14  Aligned_cols=30  Identities=13%  Similarity=0.073  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeec--CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR--SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~--~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++...  ..+|+.||||.+
T Consensus        47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~   78 (326)
T 2w1i_A           47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL   78 (326)
T ss_dssp             EEEECCSSEEEEEEEECTTSSSCCEEEEEEEE
T ss_pred             eeeccCCCeEEEEEEeccccCCCceEEEEEEe
Confidence            789999999999998531  268999999986

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=92.36  E-value=0.05  Score=51.19  Aligned_cols=28  Identities=0%  Similarity=-0.197  Sum_probs=25.2

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+..  .+++.||||.+
T Consensus       226 ~~lG~G~fg~Vy~~~~~--~~~~~vavK~~  253 (495)
T 1opk_A          226 HKLGGGQYGEVYEGVWK--KYSLTVAVKTL  253 (495)
T ss_dssp             EESGGGTTSSEEEEEEG--GGTEEEEEEEC
T ss_pred             eEecCCCCeEEEEEEEc--CCCeEEEEEEe
Confidence            78999999999999995  56899999975

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=92.30  E-value=0.074  Score=46.29  Aligned_cols=30  Identities=13%  Similarity=0.019  Sum_probs=23.3

Q ss_pred             ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++... ..+++.||||.+
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~   70 (313)
T 3brb_A           40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTM   70 (313)
T ss_dssp             EEEEC-CCCCEEEEEEECTTSCEEEEEEEEC
T ss_pred             cceeecCCeEEEEEEEeccCCceeEEEEEEE
Confidence            779999999999998852 135668999986

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=92.21  E-value=0.084  Score=46.62  Aligned_cols=30  Identities=3%  Similarity=0.046  Sum_probs=25.0

Q ss_pred             ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++...   ..+++.||||.+
T Consensus        51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~   83 (344)
T 1rjb_A           51 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKML   83 (344)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEE
T ss_pred             eeecCCCCceeEEeeeeccccCCcceEEEEEec
Confidence            789999999999999631   256789999986

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=92.16  E-value=0.11  Score=48.82  Aligned_cols=28  Identities=11%  Similarity=-0.173  Sum_probs=22.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        43 ~~lG~G~~g~V~~~~~~--~~~~~~aiK~~   70 (494)
T 3lij_A           43 KKLGSGAYGEVLLCRDK--VTHVERAIKII   70 (494)
T ss_dssp             EEEECC---EEEEEEET--TTCCEEEEEEE
T ss_pred             eEEecCCCEEEEEEEEC--CCCcEEEEEEE
Confidence            78999999999999985  68999999985

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=92.16  E-value=0.092  Score=47.42  Aligned_cols=28  Identities=14%  Similarity=0.132  Sum_probs=25.5

Q ss_pred             ceeecC--CCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFP--KFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g--~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|  |||.||+++-.  .+|+.||||.+
T Consensus        31 ~~lG~G~~~~g~V~~~~~~--~~~~~vavK~~   60 (389)
T 3gni_B           31 TVIGKGFEDLMTVNLARYK--PTGEYVTVRRI   60 (389)
T ss_dssp             EEEEEETTTTEEEEEEEET--TTCCEEEEEEE
T ss_pred             ecccCCcCCceEEEEEEEc--CCCCEEEEEEe
Confidence            589999  99999999985  68999999986

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=92.07  E-value=0.1  Score=45.91  Aligned_cols=30  Identities=3%  Similarity=-0.016  Sum_probs=22.9

Q ss_pred             ceeecCCCcEEEEEeeec-----CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR-----SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~-----~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++...     ..+++.||||.+
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~   75 (334)
T 2pvf_A           41 KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKML   75 (334)
T ss_dssp             EEEEECSSCEEEEEEETTCSTTCC---CEEEEEEC
T ss_pred             eEEeecCceeEEEeEeccccccccccceEEEEeee
Confidence            789999999999998731     246789999975

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=91.74  E-value=0.12  Score=45.53  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=24.2

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||++..    +|+.||||.+
T Consensus        37 ~~lg~G~~g~V~~~~~----~~~~vavK~~   62 (348)
T 2pml_X           37 RTLNQGKFNKIILCEK----DNKFYALKKY   62 (348)
T ss_dssp             EEEECCSSCCEEEEEE----TTEEEEEEEE
T ss_pred             EEEcCCCCeEEEEEEc----CCceEEEEEe
Confidence            7899999999999998    7999999986

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=91.63  E-value=0.1  Score=46.43  Aligned_cols=30  Identities=0%  Similarity=-0.235  Sum_probs=22.2

Q ss_pred             ceeecCCCcEEEEEeeecC------CCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRS------STGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~------~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++....      .+|+.||||++
T Consensus        48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~   83 (352)
T 2jii_A           48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLD   83 (352)
T ss_dssp             EEEEEETTEEEEEEEECC-----------CEEEEEE
T ss_pred             EEecCCCCeEEEEEeecCCccccccccCceEEEEEe
Confidence            7899999999999998410      04899999975

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=91.39  E-value=0.11  Score=46.81  Aligned_cols=30  Identities=10%  Similarity=-0.006  Sum_probs=22.8

Q ss_pred             ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+... ...+..||||.+
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~  125 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL  125 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETTTEEEEEEEEEC
T ss_pred             cEeeeCCCeEEEEEEEECCCCcEEEEEEEEc
Confidence            689999999999999841 122357899875

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=91.19  E-value=0.15  Score=44.64  Aligned_cols=30  Identities=7%  Similarity=-0.014  Sum_probs=23.4

Q ss_pred             ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++...   ...+..||||.+
T Consensus        52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~   84 (333)
T 2i1m_A           52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKML   84 (333)
T ss_dssp             EEEEECSSEEEEEEEETTCSSSCCCCEEEEEEE
T ss_pred             eEeccCCCcceEEEEecCCCcccchhHHHHHhc
Confidence            789999999999999741   123358999975

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=90.83  E-value=0.094  Score=46.53  Aligned_cols=30  Identities=13%  Similarity=0.023  Sum_probs=18.8

Q ss_pred             ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++... ..+++.||||.+
T Consensus        43 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~   73 (345)
T 2v62_A           43 KKIGSGGFGLIYLAFPTNKPEKDARHVVKVE   73 (345)
T ss_dssp             EEC------CEEEEEESSSCGGGCCEEEEEE
T ss_pred             eeEeecCCeEEEEEEecCCCCccceEEEEee
Confidence            789999999999999841 126899999975

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=90.71  E-value=0.16  Score=46.03  Aligned_cols=27  Identities=15%  Similarity=-0.057  Sum_probs=22.5

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++.   .++..||||.+
T Consensus        46 ~~lG~G~~g~V~~a~~---~~~~~~aikk~   72 (394)
T 4e7w_A           46 KVIGNGSFGVVFQAKL---VESDEVAIKKV   72 (394)
T ss_dssp             EEEEEETTEEEEEEEE---TTTEEEEEEEE
T ss_pred             EEEeeCCCeEEEEEEE---CCCCeEEEEEE
Confidence            7899999999999998   55666888754

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=90.41  E-value=0.2  Score=45.09  Aligned_cols=30  Identities=10%  Similarity=-0.012  Sum_probs=24.1

Q ss_pred             ceeecCCCcEEEEEeeec-----CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR-----SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~-----~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++...     ..+++.||||++
T Consensus        75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~  109 (382)
T 3tt0_A           75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKML  109 (382)
T ss_dssp             EEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEE
T ss_pred             eEEecCCCeEEEEEEEccccccccccceEEEEEee
Confidence            789999999999998641     134578999985

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=89.54  E-value=0.19  Score=43.82  Aligned_cols=31  Identities=10%  Similarity=-0.133  Sum_probs=24.8

Q ss_pred             cceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFR---SSTGTFLIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~  324 (325)
                      ...||+|+||.||+|+...   ..+++.||||.+
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~   63 (322)
T 1p4o_A           30 SRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTV   63 (322)
T ss_dssp             EEEEEECSSSEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             eeEeccCCceEEEeeeecCccCCCCceEEEEEec
Confidence            3689999999999998731   235789999975

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=89.44  E-value=0.18  Score=49.42  Aligned_cols=29  Identities=10%  Similarity=-0.049  Sum_probs=24.7

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+||||.||++... ..+|+.||||.+
T Consensus        86 ~~lg~G~~g~Vy~a~~~-~~~~~~vaiK~~  114 (681)
T 2pzi_A           86 GCIAHGGLGWIYLALDR-NVNGRPVVLKGL  114 (681)
T ss_dssp             EEEEEETTEEEEEEEEG-GGTTEEEEEEES
T ss_pred             EEEeeCCCeEEEEEEEc-CCCCcEEEEEEe
Confidence            78999999999999873 126899999975

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=89.35  E-value=0.23  Score=42.63  Aligned_cols=31  Identities=10%  Similarity=0.017  Sum_probs=22.0

Q ss_pred             cceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      ...||+|+||.||+|+... ...+..||||.+
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~   61 (298)
T 3f66_A           30 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL   61 (298)
T ss_dssp             EEEEEEETTEEEEEEEEC-----CEEEEEEEE
T ss_pred             cceeeecCCceEEEEEEecCCCceeEEEEEec
Confidence            3689999999999999731 123346888864

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=87.54  E-value=0.33  Score=42.06  Aligned_cols=25  Identities=16%  Similarity=-0.000  Sum_probs=20.9

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+..     ..||||.+
T Consensus        39 ~~lg~G~~g~V~~~~~~-----~~~avk~~   63 (319)
T 2y4i_B           39 ELIGKGRFGQVYHGRWH-----GEVAIRLI   63 (319)
T ss_dssp             CBCCCSSSSEEEEEEES-----SSEEEEEC
T ss_pred             eEeccCCceEEEEEEEc-----CeEEEEEe
Confidence            78999999999999982     34888875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=85.73  E-value=0.57  Score=45.64  Aligned_cols=30  Identities=10%  Similarity=0.023  Sum_probs=23.9

Q ss_pred             ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+... ...+..||||.+
T Consensus       396 ~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~  426 (656)
T 2j0j_A          396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTC  426 (656)
T ss_dssp             EEEECCSSCCEEEEEECCSSSCCEEEEEEEC
T ss_pred             eEEeeCCCEEEEEEEEecCCCccEEEEEEEe
Confidence            679999999999999842 234678999974

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=83.33  E-value=0.66  Score=40.46  Aligned_cols=31  Identities=10%  Similarity=-0.089  Sum_probs=21.1

Q ss_pred             cceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ...||+|+||.||+++.........||||.+
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~   60 (327)
T 1fvr_A           30 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRM   60 (327)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeeeecCCCceEEEEEEccCCcccceeeeee
Confidence            3689999999999999860000013488764

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=81.23  E-value=0.99  Score=42.80  Aligned_cols=26  Identities=15%  Similarity=-0.173  Sum_probs=16.9

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++.    .++.+|+|.+
T Consensus       342 ~~LG~G~fg~Vy~~~~----~~~~~~~k~~  367 (540)
T 3en9_A          342 HLIGKGAEADIKRDSY----LDFDVIIKER  367 (540)
T ss_dssp             ------CCEEEEEEEC----SSCEEEEEEE
T ss_pred             CEEeeCCCEEEEEEEE----CCCeEEEEEE
Confidence            6899999999999955    5888888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 2e-11
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
            +P D+       LLDL  N+++     +  NL+NL  L L NN ++   P   A L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 167 KYLDLKVTSMKNL--------TWLDISNNKIEGSIPGELTELSRPDCLSL--SANKLSGP 216
           + L L    +K L          L +  N+I          L++   + L  +  K SG 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 217 VPFSNKQLSTMYIVRLSPNK 236
              + + +  +  +R++   
Sbjct: 142 ENGAFQGMKKLSYIRIADTN 161

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 1e-08
 Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 13/171 (7%)

Query: 69  SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRL 128
               V  +    L ++     P+   L +Q      T     D   L  L  L L  N++
Sbjct: 11  HLRVVQCSDL-GLEKVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 129 SGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS----------MKN 178
           S   P     L  L  L L  N L          L  L+  + ++T              
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 179 LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI 229
           +  L  +  K  G   G    + +   + ++   ++         L+ +++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 178

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 5e-08
 Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 18/192 (9%)

Query: 39  SFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQ 98
                           IT        GLN            + S +    F  ++ L   
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 99  AYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS 158
                   +IP  +     L  L L  N+++    +++  L NL  L L  N+++     
Sbjct: 156 RIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213

Query: 159 TLARLTNLKYLDL----------KVTSMKNLTWLDISNNKIEG------SIPGELTELSR 202
           +LA   +L+ L L           +   K +  + + NN I          PG  T+ + 
Sbjct: 214 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

Query: 203 PDCLSLSANKLS 214
              +SL +N + 
Sbjct: 274 YSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 38/221 (17%)

Query: 49  HCKWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYG 103
            C    + C+  G       +  + +  D+  N   ++   +F    NL +L +      
Sbjct: 9   QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILI--NNK 66

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNL----------- 152
            +   P   + L KL+ L LS N+L          L+ L   +     +           
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 153 ------------TGPIPSTLARLTNLKYLDLKVTSM--------KNLTWLDISNNKIEGS 192
                       +G        +  L Y+ +  T++         +LT L +  NKI   
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186

Query: 193 IPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLS 233
               L  L+    L LS N +S     S      +  + L+
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 3e-11
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 122 DLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171
           DL  NR+ GT+P  +  L+ L  L++  NNL G IP     L        
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY 298

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.0 bits (141), Expect = 1e-10
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 3/126 (2%)

Query: 35  WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES 94
                   AN +               S++  +         A+  L+        +   
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246

Query: 95  LRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL-GNNNLT 153
             +        G++P  ++ L  L  L++S N L G IP   GNL+         N  L 
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC 305

Query: 154 G-PIPS 158
           G P+P+
Sbjct: 306 GSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.3 bits (121), Expect = 5e-08
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 16/81 (19%)

Query: 140 RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTE 199
           +NL  LDL NN + G +P  L +L  L  L++             S N + G IP +   
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV-------------SFNNLCGEIP-QGGN 289

Query: 200 LSRPDCLSLSANKL--SGPVP 218
           L R D  + + NK     P+P
Sbjct: 290 LQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 8e-07
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 176 MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
            KNL  LD+ NN+I G++P  LT+L     L++S N L G +P     L    +   + N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

Query: 236 KGL 238
           K L
Sbjct: 302 KCL 304

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.4 bits (145), Expect = 7e-11
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163
            +   P  +S+L+KLQ L  + N++S    S++ NL N+  L  G+N ++   P  LA L
Sbjct: 319 ISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 372

Query: 164 TNLKYLDL 171
           T +  L L
Sbjct: 373 TRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 1e-10
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 19/150 (12%)

Query: 49  HCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFT--G 106
           +   + +  N   ++  L+      +L     L     S    L  L             
Sbjct: 242 NLTDLDLANNQISNLAPLSGLTKLTELK----LGANQISNISPLAGLTALTNLELNENQL 297

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
              S IS L  L  L L  N +S   P  + +L  L  L   NN ++    S+LA LTN+
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 167 KYLDLK---------VTSMKNLTWLDISNN 187
            +L            + ++  +T L +++ 
Sbjct: 354 NWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 1e-10
 Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 39/226 (17%)

Query: 35  WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQL-NFSCFPNLE 93
              +        +   +    +   +   +   L+  +  +    Q+S +       NL+
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 222

Query: 94  SLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT 153
            L +     G        +++L+ L  LDL+ N++S   P  +  L  L  L LG N ++
Sbjct: 223 ELSL----NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 276

Query: 154 GPIP--------------------STLARLTNLKYLDLK---------VTSMKNLTWLDI 184
              P                    S ++ L NL YL L          V+S+  L  L  
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 336

Query: 185 SNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN-KQLSTMYI 229
           +NNK+       L  L+  + LS   N++S   P +N  +++ + +
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 43/234 (18%)

Query: 35  WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES 94
             N+   ++  S           N    +  L        L+  +               
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 95  LRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG 154
             + A     +   P  I   + L  L L+ N+L       + +L NL  LDL NN ++ 
Sbjct: 200 ESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 155 PIPSTLARLTNLKYLDL-------------------------------KVTSMKNLTWLD 183
             P  L+ LT L  L L                                ++++KNLT+L 
Sbjct: 256 LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 184 ISNNKIEGSIP-GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
           +  N I    P   LT+L R   L  + NK+S     +N  L+ +  +    N+
Sbjct: 314 LYFNNISDISPVSSLTKLQR---LFFANNKVSDVSSLAN--LTNINWLSAGHNQ 362

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 138 NLRNLVHLDLGNNNLTGPIP-STLARLTNLKYLDLKVTS------MKNLTWLDISNNKIE 190
            L   +   LG  N+T  +  + L ++T L+   L + S      + NLT ++ SNN++ 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 79

Query: 191 GSIP-GELTEL 200
              P   LT+L
Sbjct: 80  DITPLKNLTKL 90

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 90  PNLES-LRIQAYYYGFTGSIP-SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147
             L   ++        T ++  +D+  ++ LQ   L +  + G     +  L NL  ++ 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 73

Query: 148 GNNNLTGPIPSTLARLTNLKYL 169
            NN LT   P  L  LT L  +
Sbjct: 74  SNNQLTDITP--LKNLTKLVDI 93

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN 178
           ++L L+   L  T+  ++  L  + HLDL +N L    P+ LA L  L+ L     +++N
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 179 L---------TWLDISNNKIEG-SIPGELTELSRPDCLSLSANKLSG 215
           +           L + NN+++  +    L    R   L+L  N L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 85  NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGT-IPSNIGNLRNLV 143
                  L  L +         ++    +   +LQ L L  NRL  +     + +   LV
Sbjct: 35  LPPALAALRCLEVLQASDNALENVDGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLV 93

Query: 144 HLDLGNNNLTGP---IPSTLARLTNLKYL 169
            L+L  N+L             L ++  +
Sbjct: 94  LLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 118 LQLLDLSLNRLSGT-IPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM 176
           +Q LD+    LS       +  L+    + L +  LT      ++           +   
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA---------LRVN 54

Query: 177 KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215
             L  L++ +N++       + +  +     +    L  
Sbjct: 55  PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 4e-07
 Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 12/170 (7%)

Query: 35  WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES 94
              +   + +  +       +        + +    +     +              L+ 
Sbjct: 288 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 347

Query: 95  LRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGT----IPSNIGNLRNLVHLDLGNN 150
              +    G            S L++L L+   +S +    + + +    +L  LDL NN
Sbjct: 348 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 407

Query: 151 NLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTEL 200
            L       L                  L  L + +      +   L  L
Sbjct: 408 CLGDAGILQLVESVR--------QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 6e-07
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 91  NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG----TIPSNIGNLRNLVHLD 146
           +++SL IQ             +  L + Q++ L    L+      I S +     L  L+
Sbjct: 3   DIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 147 LGNNNLTGPIPSTLARL-----TNLKYLDL 171
           L +N L       + +        ++ L L
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 3e-04
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 138 NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGEL 197
               L  L L + +++    S+LA           + +  +L  LD+SNN +  +   +L
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAAT---------LLANHSLRELDLSNNCLGDAGILQL 417

Query: 198 TE-LSRPDC----LSLSANKLSGPVP 218
            E + +P C    L L     S  + 
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEME 443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 5e-08
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 111 DISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLD 170
           ++S ++    ++     L+  +P ++   ++   L L  N L     +TL   T L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 171 L 171
           L
Sbjct: 62  L 62

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN 151
           ++P D+       +L LS N L     + +     L  L+L    
Sbjct: 24  ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 2/154 (1%)

Query: 19  AFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQ 78
              P    T+  LD                    +      +  ++G  L    V   + 
Sbjct: 50  TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 79  AQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQ-LLDLSLNRLSGTIPSNIG 137
            +L+ L       L  L+          ++P  +   +     L L+ N L+      + 
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 138 NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171
            L NL  L L  N+L   IP        L +  L
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 18/119 (15%), Positives = 23/119 (19%), Gaps = 2/119 (1%)

Query: 35  WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES 94
                      +            S        L           +L  L          
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 95  LRIQAYYY-GFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNL 152
           L   +      T      ++ L  L  L L  N L  TIP        L    L  N  
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 16/74 (21%)

Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG 195
           +  + + + ++    NLT  +P  L                K+ T L +S N +      
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLP---------------KDTTILHLSENLLYTFSLA 49

Query: 196 ELTELSRPDCLSLS 209
            L   +R   L+L 
Sbjct: 50  TLMPYTRLTQLNLD 63

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 7e-08
 Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 6/137 (4%)

Query: 35  WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES 94
                   A       K + +T      +  L        L       Q+         +
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN--QITNISPLAGLT 151

Query: 95  LRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG 154
                       S  + ++ LSKL  L    N++S   P  + +L NL+ + L NN ++ 
Sbjct: 152 NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209

Query: 155 PIPSTLARLTNLKYLDL 171
             P  LA  +NL  + L
Sbjct: 210 VSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 3/115 (2%)

Query: 35  WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES 94
                  +   +      +     +  + I       ++   +       + +   NL  
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK 174

Query: 95  LRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN 149
           L            I   +++L  L  + L  N++S   P  + N  NL  + L N
Sbjct: 175 LTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 17/76 (22%)

Query: 114 ALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV 173
           AL+    +    + ++ T+     +L  +  L      +T         +  ++YL    
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--------IEGVQYL---- 62

Query: 174 TSMKNLTWLDISNNKI 189
               NL  L++ +N+I
Sbjct: 63  ---NNLIGLELKDNQI 75

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 9e-08
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 11/133 (8%)

Query: 35  WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES 94
                 ++ +          +  +         L      LNA +   +      P+LE 
Sbjct: 229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 288

Query: 95  LRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG 154
           L +          +P+      +L+ L  S N L+  +P    NL+    L +  N L  
Sbjct: 289 LNVS---NNKLIELPALPP---RLERLIASFNHLA-EVPELPQNLK---QLHVEYNPLRE 338

Query: 155 PIPSTLARLTNLK 167
             P     + +L+
Sbjct: 339 -FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 123 LSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS----MKN 178
             LN  S  I S      +L  L++ NN L   +P+   RL  L      +       +N
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAEVPELPQN 325

Query: 179 LTWLDISNNKIEG--SIPGELTEL 200
           L  L +  N +     IP  + +L
Sbjct: 326 LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS 175
            +   L+L+   LS ++P    +L     L    N+LT  +P     L +L   +  + +
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 176 MKNLTWL 182
           + +L  L
Sbjct: 93  LSDLPPL 99

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 104 FTGSIPSDISALSKLQLLDLSLNRLSG-TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR 162
           F     ++  +  ++Q +DLS + +   T+   +     L +L L    L+ PI +TLA+
Sbjct: 34  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

Query: 163 LTNLKYLD 170
            +NL  L+
Sbjct: 94  NSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN 178
           Q LDL+   L   +   + + + ++      + +  P+                  S   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHF--------------SPFR 47

Query: 179 LTWLDISNNKIEG-SIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTM 227
           +  +D+SN+ IE  ++ G L++ S+   LSL   +LS P+  +  + S +
Sbjct: 48  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 97

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 39/159 (24%), Positives = 56/159 (35%), Gaps = 15/159 (9%)

Query: 67  NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126
            L +  +  NA   L    F    NL  L +  +    +         L  L  L L  N
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFL--HGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK----------VTSM 176
           R++   P    +L  L+ L L  NNL+      LA L  L+YL L               
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247

Query: 177 KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215
             L     S++++  S+P  L          L+AN L G
Sbjct: 248 AWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 38/171 (22%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN--------------- 151
           ++P  I A    Q + L  NR+S    ++    RNL  L L +N                
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 152 ----------LTGPIPSTLARLTNLKYLDL-----------KVTSMKNLTWLDISNNKIE 190
                     L    P+T   L  L  L L               +  L +L + +N ++
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 191 GSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN 241
                   +L     L L  N++S     + + L ++  + L  N+    +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 39/192 (20%), Positives = 57/192 (29%), Gaps = 11/192 (5%)

Query: 55  ITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISA 114
           I+   A S             +               L      +         P+    
Sbjct: 44  ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV- 173
           L +L  L L    L    P     L  L +L L +N L      T   L NL +L L   
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 174 ----------TSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQ 223
                       + +L  L +  N++    P    +L R   L L AN LS     +   
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 224 LSTMYIVRLSPN 235
           L  +  +RL+ N
Sbjct: 224 LRALQYLRLNDN 235

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 75  LNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPS 134
            ++ A   ++     P L SL +          + S +     L++L+LS N L      
Sbjct: 50  RSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 109

Query: 135 NIGNLRNLVHLDLGNNNLTGPIPST-------LARLTNLKYLD 170
           +      L  L L  N+L+               R   L  LD
Sbjct: 110 DKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 18/142 (12%)

Query: 107 SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166
            +   +S         L L  L      ++      V L+  ++     +      +  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAAT-LRIIEENIPEL 67

Query: 167 KYLDLK-------------VTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213
             L+L              V    NL  L++S N+++     +  +  + + L L  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 214 SGPVPFSNKQLSTMYIVRLSPN 235
           S      ++      I    P 
Sbjct: 128 SDTFR--DQSTYISAIRERFPK 147

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 130 GTIPSNI-GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171
             +P+++       V LD+    +       L  L  L+    
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 3/124 (2%)

Query: 31  LDTGWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFP 90
           +                   +          +          +    +  + +++   F 
Sbjct: 115 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN 174

Query: 91  NLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN 149
             +   +          +P+D+    S   +LD+S  R+       + NL+ L       
Sbjct: 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-- 232

Query: 150 NNLT 153
            NL 
Sbjct: 233 YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLT 180
                ++++  IPS++   RN + L      L        +   +L+ +++    +  + 
Sbjct: 13  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 181 W 181
            
Sbjct: 70  E 70

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 7e-05
 Identities = 7/93 (7%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGP----IPSTLARLTNLKYLDLK 172
            L+L  ++      ++ + +    ++  + L  N +       +   +A   +L+  +  
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 173 VTSMKNLTWLDISNNKIEGSIPGELTELSRPDC 205
                 +        ++      +  +L     
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 16/86 (18%)

Query: 123 LSLNRLSGTIPSNIGN------LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM 176
           L+   LS    + + +         L  L L  N +      TL  +            M
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI--------DEKM 301

Query: 177 KNLTWLDISNNKI--EGSIPGELTEL 200
            +L +L+++ N+   E  +  E+ E+
Sbjct: 302 PDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 115 LSKLQLLDLSLNRLSGTIPSNI-----GNLRNLVHLDLGNNNLT--GPIPSTLARLTNLK 167
              LQ L L  N +       +       + +L+ L+L  N  +    +   +  + + +
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

Query: 168 YLD 170
              
Sbjct: 332 GRG 334

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 112 ISALSKLQLLDLSLNRLSGTIP------SNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
                 +   +     L G IP      + +  L+   HL L  NN+   I S L+ + N
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISS-LSGMEN 71

Query: 166 LKYLDLKVTSMKNLTWL 182
           L+ L L    +K +  L
Sbjct: 72  LRILSLGRNLIKKIENL 88

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 17/179 (9%)

Query: 49  HCKWIGITCNSAG--SI-IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLR-IQAYYYGF 104
           HC+   + C   G   I   + L   ++ LN        +   F  L  L  ++      
Sbjct: 7   HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 105 TGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT 164
           TG  P+     S +Q L L  N++          L  L  L+L +N ++  +P +   L 
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 165 NLKYLDLKVTSM----------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213
           +L  L+L               + L    ++        P ++ ++       L  ++ 
Sbjct: 127 SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQ---IKDLPHSEF 182

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 131 TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169
           T    + NL  L  LD+ +N ++    S LA+LTNL+ L
Sbjct: 163 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 133 PSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171
              +  L  L +L L  N+++      LA L NL  L+L
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 3/115 (2%)

Query: 35  WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES 94
             N    +++             ++  S I   +    ++          + +    L  
Sbjct: 98  DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK 157

Query: 95  LRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN 149
           L   +        I   ++ L+KLQ L LS N +S      +  L+NL  L+L +
Sbjct: 158 LDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 14/120 (11%)

Query: 127 RLSGTIPSNIG---NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL---------KVT 174
           +L+  +        N      LDL    +   I +  A L     +D             
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 175 SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG-PVPFSNKQLSTMYIVRLS 233
            ++ L  L ++NN+I     G    L     L L+ N L           L ++  + + 
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.59
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.16
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.62
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.45
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.23
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	96.74
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	96.46
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	96.41
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	96.22
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	95.95
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	95.9
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	95.42
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	94.82

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.5e-31  Score=235.60  Aligned_cols=211  Identities=25%  Similarity=0.407  Sum_probs=165.9

Q ss_pred             CCHHHHHHHHcCCC-----CCCCCCCCCCCCCCc--cceeeEeCCCC---CeeEeeccccccCCccccccCccccCCCCC
Q 045233           22 PIQLETKALLDTGW-----WNSSFWMANYSSDHC--KWIGITCNSAG---SIIGLNLSWYDVDLNAQAQLSQLNFSCFPN   91 (325)
Q Consensus        22 ~~~~~~~~ll~~~~-----~~~~~W~~~~~~~~C--~w~gv~c~~~~---~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~   91 (325)
                      |.++||.||++++.     ..+++|  ..+.|||  .|.||+|+..+   ||+.++|.+.++...  ..++. .++.+++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW--~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~--~~lp~-~l~~L~~   77 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP--YPIPS-SLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTC--CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC--EECCG-GGGGCTT
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCC--CCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCC--CCCCh-HHhcCcc
Confidence            67899999998542     235788  4577999  59999998643   799999987655532  12322 5888999


Q ss_pred             CCEEEecccc-CcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEE
Q 045233           92 LESLRIQAYY-YGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLD  170 (325)
Q Consensus        92 L~~L~l~~~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  170 (325)
                      |++|++  ++ |.+.|.+|+.++++++|++|++++|++.+..+..+..+.+|+++++++|++.+.+|..+.++++++.++
T Consensus        78 L~~L~L--s~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          78 LNFLYI--GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             CSEEEE--EEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             cccccc--ccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            999999  75 789999999999999999999999999888888788888888888888888878888888888888888


Q ss_pred             cCcC-----------------------------------------------------------CCCCCcEEEccCCcCCC
Q 045233          171 LKVT-----------------------------------------------------------SMKNLTWLDISNNKIEG  191 (325)
Q Consensus       171 l~~n-----------------------------------------------------------~l~~L~~L~Ls~n~l~~  191 (325)
                      +++|                                                           .+++++.+++++|.+++
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7766                                                           33566777777777765


Q ss_pred             CCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233          192 SIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       192 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      .+| .+..+++|+.|++++|+++|.+|..++++++|+.|++++|+++|.
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence            544 567777888888888888887888888888888888888877654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.6e-21  Score=166.34  Aligned_cols=170  Identities=25%  Similarity=0.203  Sum_probs=152.6

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      +++.++++.|.+..++...|.++++|++|++  ++|.++. +| .+..+++|++|++++|+++ ..+..+.++++|++|+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L--~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEEC--TTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccc--ccccccc-cc-ccccccccccccccccccc-cccccccccccccccc
Confidence            5677888899999998888999999999999  8888874 33 4678999999999999998 5677889999999999


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233          147 LGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG  215 (325)
Q Consensus       147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  215 (325)
                      +++|.+....+..+..+.+++.|++++|           .+++++.+++++|++++..+..|..+++|++|+|++|+|+ 
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            9999999777888899999999999988           4578999999999999888888999999999999999999 


Q ss_pred             CCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          216 PVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       216 ~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      .+|..+..+++|+.|++++|++.|..-
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            788888899999999999999998744

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.3e-21  Score=167.45  Aligned_cols=193  Identities=22%  Similarity=0.216  Sum_probs=162.4

Q ss_pred             CCCcc---ceeeEeCCCCCeeEe------eccccccCCccccccCccccCCCCCCCEEEeccccCcCCC-----------
Q 045233           47 SDHCK---WIGITCNSAGSIIGL------NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTG-----------  106 (325)
Q Consensus        47 ~~~C~---w~gv~c~~~~~v~~l------~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~-----------  106 (325)
                      .+.|.   +.-|.|+..+ ++++      +++.+++++|.+..++...|.++++|++|++  ++|.+..           
T Consensus         5 ~C~C~~~~~~~v~c~~~~-L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l--s~n~l~~i~~~~~~~~~~   81 (284)
T d1ozna_           5 ACVCYNEPKVTTSCPQQG-LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWL--HSNVLARIDAAAFTGLAL   81 (284)
T ss_dssp             TCEEECSSSCEEECCSSC-CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECTTTTTTCTT
T ss_pred             CCEEcCCCCeEEEcCCCC-CCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccc--cccccccccccccccccc
Confidence            45562   4468886532 3333      4567888899999999888999999999999  6665432           


Q ss_pred             --------------CCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcC
Q 045233          107 --------------SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK  172 (325)
Q Consensus       107 --------------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  172 (325)
                                    ..+..+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..+++|+.|+++
T Consensus        82 ~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~  161 (284)
T d1ozna_          82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH  161 (284)
T ss_dssp             CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccc
Confidence                          225567788999999999999987777778889999999999999997667789999999999999


Q ss_pred             cC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchH
Q 045233          173 VT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       173 ~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                      +|           .+++|+++++++|++++..|..|..+++|++|++++|.+++..+..+..+++|+.+++++|++.|..
T Consensus       162 ~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            98           5678999999999999999999999999999999999999888889999999999999999999875


Q ss_pred             H
Q 045233          242 F  242 (325)
Q Consensus       242 ~  242 (325)
                      .
T Consensus       242 ~  242 (284)
T d1ozna_         242 R  242 (284)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=5.3e-19  Score=155.93  Aligned_cols=188  Identities=23%  Similarity=0.287  Sum_probs=124.5

Q ss_pred             CCCCCCccceeeEeCCCCCeeE------eeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCc
Q 045233           44 NYSSDHCKWIGITCNSAGSIIG------LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSK  117 (325)
Q Consensus        44 ~~~~~~C~w~gv~c~~~~~v~~------l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~  117 (325)
                      .+..+.|.|.++.|+..+ +++      -+++.++++.|.+..++...|.++++|++|++  ++|.+....|..|.++++
T Consensus         4 ~p~~c~c~~~~~~C~~~~-L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l--~~n~~~~i~~~~f~~l~~   80 (305)
T d1xkua_           4 CPFRCQCHLRVVQCSDLG-LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL--INNKISKISPGAFAPLVK   80 (305)
T ss_dssp             CCTTCEEETTEEECTTSC-CCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC--CSSCCCCBCTTTTTTCTT
T ss_pred             CCCCCEecCCEEEecCCC-CCccCCCCCCCCCEEECcCCcCCCcChhHhhcccccccccc--ccccccccchhhhhCCCc
Confidence            345677999999997532 111      25677888899999999888999999999999  899999888888999999


Q ss_pred             CCEEecccCCCCCCCchhhcCCcccceeecccCcCCCc--------------------------CchhccCCC-------
Q 045233          118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGP--------------------------IPSTLARLT-------  164 (325)
Q Consensus       118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--------------------------~p~~~~~l~-------  164 (325)
                      |++|++++|+++ .+|..+  ...++.|++.+|.+.+.                          .+..+..++       
T Consensus        81 L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l  157 (305)
T d1xkua_          81 LERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  157 (305)
T ss_dssp             CCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             cCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccc
Confidence            999999999887 344321  12333444444333321                          111223333       


Q ss_pred             --------------CCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCC
Q 045233          165 --------------NLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPF  219 (325)
Q Consensus       165 --------------~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  219 (325)
                                    +|+.|++++|           .++.++.|++++|++++..+..+.++++|+.|+|++|+|+ .+|.
T Consensus       158 ~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~  236 (305)
T d1xkua_         158 ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG  236 (305)
T ss_dssp             CSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             ccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccc
Confidence                          4444444443           3445666666666666655666666666667777666666 4455


Q ss_pred             cccCCCCCcEEEccCCCCC
Q 045233          220 SNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       220 ~~~~l~~L~~L~l~~N~~~  238 (325)
                      .+..+++|+.|++++|++.
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCC
T ss_pred             ccccccCCCEEECCCCccC
Confidence            6666667777777666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.2e-19  Score=151.60  Aligned_cols=145  Identities=23%  Similarity=0.231  Sum_probs=131.6

Q ss_pred             CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233           90 PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL  169 (325)
Q Consensus        90 ~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  169 (325)
                      +++++|+|  ++|.+.+..+..|.++++|++|+|++|+++ .+|. +..+++|++|+|++|+++ ..+..+..+++|+.|
T Consensus        31 ~~l~~L~L--s~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          31 KDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL  105 (266)
T ss_dssp             TTCCEEEC--TTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEE
T ss_pred             cCCCEEEC--cCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccc-ccccccccccccccc
Confidence            57999999  899998877788999999999999999998 4553 678999999999999999 567789999999999


Q ss_pred             EcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          170 DLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       170 ~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      ++++|           .+.++++|++++|.++...+..+..++.++.+++++|++++..+..+..+++|+.|++++|++.
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            99988           4578999999999999888888899999999999999999888888999999999999999987


Q ss_pred             c
Q 045233          239 G  239 (325)
Q Consensus       239 ~  239 (325)
                      .
T Consensus       186 ~  186 (266)
T d1p9ag_         186 T  186 (266)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=1.2e-18  Score=154.18  Aligned_cols=150  Identities=27%  Similarity=0.400  Sum_probs=125.3

Q ss_pred             CCCCEEEeccccCcCCC--CCcccccCCCcCCEEeccc-CCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233           90 PNLESLRIQAYYYGFTG--SIPSDISALSKLQLLDLSL-NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL  166 (325)
Q Consensus        90 ~~L~~L~l~~~~n~~~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  166 (325)
                      .+++.|++  +++.+.+  .+|+.++++++|++|+|++ |+++|.+|+.|+++++|++|+|++|++.+..|..+..+.+|
T Consensus        50 ~~v~~L~L--~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDL--SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEE--ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEEEC--CCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            36889999  8888887  4889999999999999997 89999999999999999999999999999899999999999


Q ss_pred             cEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCC-CEEECCCCcCCCC------------------
Q 045233          167 KYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRP-DCLSLSANKLSGP------------------  216 (325)
Q Consensus       167 ~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~------------------  216 (325)
                      +.++++.|           .++.++.+++++|.+++.+|+.+..+..+ +.+++++|++++.                  
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~  207 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999988           57889999999999988888777666554 5566555554321                  


Q ss_pred             ----------------------------CCCcccCCCCCcEEEccCCCCCchH
Q 045233          217 ----------------------------VPFSNKQLSTMYIVRLSPNKGLGSN  241 (325)
Q Consensus       217 ----------------------------~p~~~~~l~~L~~L~l~~N~~~~~~  241 (325)
                                                  .+..++.+++|+.|++++|++++..
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~i  260 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccCccCeecccC
Confidence                                        1223566788999999999998653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1.3e-17  Score=137.17  Aligned_cols=136  Identities=21%  Similarity=0.315  Sum_probs=88.1

Q ss_pred             CCCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCC-cccccCCCcCCEEec
Q 045233           45 YSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSI-PSDISALSKLQLLDL  123 (325)
Q Consensus        45 ~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~-p~~l~~l~~L~~L~L  123 (325)
                      +..+.|.+..|.|+..                .+..++.. +  .+++++|++  ++|.+++.+ +..|..+++|++|++
T Consensus         3 P~~C~C~~~~v~Cs~~----------------~L~~iP~~-l--p~~l~~L~L--s~N~i~~~~~~~~f~~l~~L~~L~L   61 (192)
T d1w8aa_           3 PAMCHCEGTTVDCTGR----------------GLKEIPRD-I--PLHTTELLL--NDNELGRISSDGLFGRLPHLVKLEL   61 (192)
T ss_dssp             CTTSEEETTEEECTTS----------------CCSSCCSC-C--CTTCSEEEC--CSCCCCSBCCSCSGGGCTTCCEEEC
T ss_pred             CCCCEEcCCEEEEeCC----------------CcCccCCC-C--CCCCCEEEe--CCCCCcccccccccCCCceEeeeec
Confidence            3456688888888543                22223221 1  256777888  777776533 455677778888888


Q ss_pred             ccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCC
Q 045233          124 SLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRP  203 (325)
Q Consensus       124 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  203 (325)
                      ++|.+....+..+..+++|++|+|++|+++...|..|.++++|++|             +|++|+|++..|+.|..+++|
T Consensus        62 ~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L-------------~L~~N~l~~i~~~~f~~l~~L  128 (192)
T d1w8aa_          62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL-------------NLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             CSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE-------------ECCSSCCCEECTTSSTTCTTC
T ss_pred             cccccccccccccccccccceeeeccccccccCHHHHhCCCccccc-------------ccCCccccccCHHHhcCCccc
Confidence            8888777777777777888888888888876666667666555444             445555555555556666666


Q ss_pred             CEEECCCCcCC
Q 045233          204 DCLSLSANKLS  214 (325)
Q Consensus       204 ~~L~L~~N~l~  214 (325)
                      ++++|++|++.
T Consensus       129 ~~l~L~~N~~~  139 (192)
T d1w8aa_         129 TSLNLASNPFN  139 (192)
T ss_dssp             CEEECTTCCBC
T ss_pred             ccccccccccc
Confidence            66666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.3e-16  Score=133.02  Aligned_cols=152  Identities=22%  Similarity=0.303  Sum_probs=124.3

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                      +.++++.+.+..+..  +..+++|++|++  ++|.+++..  .++.+++|++|++++|+++ .+| .+.++++|+.|+++
T Consensus        49 ~~L~l~~~~i~~l~~--l~~l~~L~~L~L--~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          49 DQIIANNSDIKSVQG--IQYLPNVTKLFL--NGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             CEEECTTSCCCCCTT--GGGCTTCCEEEC--CSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECT
T ss_pred             cEEECcCCCCCCchh--HhhCCCCCEEeC--CCccccCcc--ccccCcccccccccccccc-ccc-cccccccccccccc
Confidence            344555666665543  677999999999  888888643  3688999999999999998 455 58889999999999


Q ss_pred             cCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCC
Q 045233          149 NNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPF  219 (325)
Q Consensus       149 ~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  219 (325)
                      +|.+. .+ +.+..+++++.++++.|         .+++|+++++++|++++ ++ .+.++++|+.|++++|++++ +| 
T Consensus       121 ~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-  194 (210)
T d1h6ta2         121 HNGIS-DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-  194 (210)
T ss_dssp             TSCCC-CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-
T ss_pred             ccccc-cc-ccccccccccccccccccccccccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-
Confidence            99987 34 35888999999999888         46789999999999985 44 38899999999999999984 44 


Q ss_pred             cccCCCCCcEEEccC
Q 045233          220 SNKQLSTMYIVRLSP  234 (325)
Q Consensus       220 ~~~~l~~L~~L~l~~  234 (325)
                      .+..+++|++|++++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            588999999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.2e-16  Score=136.57  Aligned_cols=163  Identities=20%  Similarity=0.185  Sum_probs=123.7

Q ss_pred             CccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCC----------------------
Q 045233           75 LNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTI----------------------  132 (325)
Q Consensus        75 ~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~----------------------  132 (325)
                      ..++..++.   .-.+++++|++  ++|.+++..+..|.++++|++|++++|.+....                      
T Consensus        20 ~~~L~~iP~---~ip~~~~~L~L--s~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          20 QQGLQAVPV---GIPAASQRIFL--HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             SSCCSSCCT---TCCTTCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             CCCCCccCC---CCCCCCCEEEC--cCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            334444543   22367899999  899998777778999999999999999875322                      


Q ss_pred             ---chhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhh
Q 045233          133 ---PSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELT  198 (325)
Q Consensus       133 ---p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~  198 (325)
                         +..|.++++|++|++++|.+....+..+....+|+.+++++|           .+++|+.|++++|++++..+..|.
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc
Confidence               334556667777777777776555556666777777777766           345788888888888877778888


Q ss_pred             CCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          199 ELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      ++++|+.+++++|++++..|..+..+++|+.|++++|.+.....
T Consensus       175 ~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             cccccchhhhhhccccccChhHhhhhhhcccccccccccccccc
Confidence            88888888888888888788888888889999999988876543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.6e-16  Score=130.58  Aligned_cols=132  Identities=26%  Similarity=0.290  Sum_probs=110.9

Q ss_pred             CEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCC-CchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEc
Q 045233           93 ESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGT-IPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL  171 (325)
Q Consensus        93 ~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  171 (325)
                      +.++.  ++++++ .+|..+.  +++++|+|++|+|+.. .+..|.++++|+.|+|++|++....+..+..+++|+    
T Consensus        11 ~~v~C--s~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~----   81 (192)
T d1w8aa_          11 TTVDC--TGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ----   81 (192)
T ss_dssp             TEEEC--TTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC----
T ss_pred             CEEEE--eCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc----
Confidence            46777  777777 4666553  6899999999999864 456688999999999999999988788887766655    


Q ss_pred             CcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          172 KVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       172 ~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                               +|+|++|+++...|..|.++++|++|+|++|+|++..|..|..+++|+++++++|++.|...
T Consensus        82 ---------~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          82 ---------ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ---------EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ---------eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence                     55777888887788899999999999999999998888999999999999999999987643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.5e-16  Score=127.19  Aligned_cols=132  Identities=29%  Similarity=0.408  Sum_probs=66.4

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +..+++|++|++  ++|.+++..|  +.++++|++|++++|.+. .++ .+.++++|+.|++++|.+.. . +.+..+++
T Consensus        58 l~~l~nL~~L~L--s~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~  129 (199)
T d2omxa2          58 VEYLNNLTQINF--SNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTN  129 (199)
T ss_dssp             GGGCTTCCEEEC--CSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTT
T ss_pred             cccCCCcCcCcc--ccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhh
Confidence            445566666666  5555554322  556666666666666555 232 25556666666666665552 2 23455555


Q ss_pred             CcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcE
Q 045233          166 LKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI  229 (325)
Q Consensus       166 L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  229 (325)
                      |+.|++++|         .+++|+.|++++|++++. + .++++++|+.|++++|++++ ++ .++++++|+.
T Consensus       130 L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~  198 (199)
T d2omxa2         130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLES  198 (199)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSE
T ss_pred             hHHhhhhhhhhcccccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCc
Confidence            555555554         233444555555555432 1 24445555555555555543 22 2344444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.2e-15  Score=125.92  Aligned_cols=141  Identities=28%  Similarity=0.382  Sum_probs=121.3

Q ss_pred             CCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233           87 SCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL  166 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  166 (325)
                      ..++++++|++  +++.+...  +.+..+++|++|++++|++++. ++ ++++++|++|++++|.+. .++ .+.++++|
T Consensus        37 ~~l~~l~~L~l--~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L  108 (199)
T d2omxa2          37 TDLDQVTTLQA--DRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNL  108 (199)
T ss_dssp             HHHTTCCEEEC--TTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTC
T ss_pred             HHhcCCCEEEC--CCCCCCCc--cccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-cccccccc
Confidence            45788999999  88887753  3478899999999999999854 43 899999999999999998 455 48899999


Q ss_pred             cEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCC
Q 045233          167 KYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       167 ~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~  237 (325)
                      +.|++++|         .+++|+.|++++|++. .++ .+..+++++.|++.+|++++..  .++++++|+.|++++|++
T Consensus       109 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         109 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKV  184 (199)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCC
Confidence            99999987         6789999999999998 344 6889999999999999999643  378999999999999998


Q ss_pred             Cc
Q 045233          238 LG  239 (325)
Q Consensus       238 ~~  239 (325)
                      +.
T Consensus       185 ~~  186 (199)
T d2omxa2         185 SD  186 (199)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=2.9e-15  Score=131.59  Aligned_cols=161  Identities=23%  Similarity=0.199  Sum_probs=129.6

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      ++-+...+..+|.. +  .+++++|++  ++|.++...+..|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus        15 ~~C~~~~L~~lP~~-l--~~~l~~L~L--s~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          15 VQCSDLGLEKVPKD-L--PPDTALLDL--QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EECTTSCCCSCCCS-C--CTTCCEEEC--CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             EEecCCCCCccCCC-C--CCCCCEEEC--cCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            44445556666542 2  378999999  899998777778999999999999999999777888999999999999999


Q ss_pred             cCCCcCchhccCCCCCcEEEcCcC--------------------------------------------------------
Q 045233          151 NLTGPIPSTLARLTNLKYLDLKVT--------------------------------------------------------  174 (325)
Q Consensus       151 ~l~~~~p~~~~~l~~L~~L~l~~n--------------------------------------------------------  174 (325)
                      +++ .+|..+  ...++.|++..|                                                        
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC
Confidence            999 566533  345666666554                                                        


Q ss_pred             --CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233          175 --SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       175 --~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                        .+++|+.|++++|..++..+..+.+++.++.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus       167 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~  233 (305)
T d1xkua_         167 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK  233 (305)
T ss_dssp             SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS
T ss_pred             cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc
Confidence              23467777888887777778888888999999999999998888888999999999999998764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=5.9e-15  Score=122.77  Aligned_cols=140  Identities=27%  Similarity=0.303  Sum_probs=119.5

Q ss_pred             CCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCc
Q 045233           88 CFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLK  167 (325)
Q Consensus        88 ~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  167 (325)
                      .+.+|+.|++  ++|.+....  .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+++ .+| .+..+++|+
T Consensus        44 ~L~~L~~L~l--~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIA--NNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEEC--TTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCC
T ss_pred             HhcCccEEEC--cCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccc
Confidence            4678999999  888887543  47889999999999999995 44 3688999999999999998 455 589999999


Q ss_pred             EEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          168 YLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       168 ~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      .|++++|         .++.++.+++++|.+++  +..+..+++|+.+++++|++++. + .++.+++|+.|++++|.+.
T Consensus       116 ~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC
Confidence            9999988         46789999999999984  33578899999999999999964 3 3789999999999999986


Q ss_pred             c
Q 045233          239 G  239 (325)
Q Consensus       239 ~  239 (325)
                      .
T Consensus       192 ~  192 (210)
T d1h6ta2         192 D  192 (210)
T ss_dssp             B
T ss_pred             C
Confidence            4

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.1e-14  Score=122.36  Aligned_cols=158  Identities=26%  Similarity=0.340  Sum_probs=120.0

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.+++..+.+..+.  .+..+++|++|++  ++|.+.+..|  +..+++|+++++++|.++ .++ .+..+++|+++++
T Consensus        43 L~~L~l~~~~i~~l~--~l~~l~~L~~L~l--s~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          43 ITTLSAFGTGVTTIE--GVQYLNNLIGLEL--KDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             CCEEECTTSCCCCCT--TGGGCTTCCEEEC--CSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred             cCEEECCCCCCCcch--hHhcCCCCcEeec--CCceeecccc--cccccccccccccccccc-ccc-ccccccccccccc
Confidence            344555666676664  3778999999999  8888876543  788899999999999887 343 4788899999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP  218 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  218 (325)
                      +++...+.  ..+...+.++.+.++.+         .+++|+.|++++|.+++..  .+.++++|+.|++++|++++. +
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~  189 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S  189 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G
T ss_pred             cccccccc--chhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCCC-h
Confidence            99888743  23566777888887766         4567888888888887432  377888888888888888853 3


Q ss_pred             CcccCCCCCcEEEccCCCCCc
Q 045233          219 FSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       219 ~~~~~l~~L~~L~l~~N~~~~  239 (325)
                       .++.+++|+.|++++|+++.
T Consensus       190 -~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         190 -PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             -GGGGCTTCCEEECTTSCCCB
T ss_pred             -hhcCCCCCCEEECcCCcCCC
Confidence             37788888888888888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=6.3e-15  Score=132.87  Aligned_cols=156  Identities=27%  Similarity=0.373  Sum_probs=103.5

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      ++++.+.+..+.  ++...++|+.|++  ++|.+...  +.+..+++|+.|++++|.+++..+  +..+++|++|++++|
T Consensus       202 l~l~~n~i~~~~--~~~~~~~L~~L~l--~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~  273 (384)
T d2omza2         202 LIATNNQISDIT--PLGILTNLDELSL--NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN  273 (384)
T ss_dssp             EECCSSCCCCCG--GGGGCTTCCEEEC--CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             eeccCCccCCCC--cccccCCCCEEEC--CCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCc
Confidence            344445444443  2455677888888  77766542  356777888888888888774332  677778888888888


Q ss_pred             cCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233          151 NLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN  221 (325)
Q Consensus       151 ~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  221 (325)
                      ++++ ++ .+..++.++.++++.|         .+++++.|++++|++++..  .+..+++|+.|++++|++++ ++ .+
T Consensus       274 ~l~~-~~-~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l  347 (384)
T d2omza2         274 QISN-IS-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SL  347 (384)
T ss_dssp             CCCC-CG-GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GG
T ss_pred             ccCC-CC-ccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hH
Confidence            8774 33 2666777777777766         3456777777777777542  36677777777777777764 23 46


Q ss_pred             cCCCCCcEEEccCCCCCch
Q 045233          222 KQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       222 ~~l~~L~~L~l~~N~~~~~  240 (325)
                      +.+++|+.|++++|++++.
T Consensus       348 ~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         348 ANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             GGCTTCCEEECCSSCCCBC
T ss_pred             cCCCCCCEEECCCCcCCCC
Confidence            7777777777777776653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.2e-15  Score=124.98  Aligned_cols=188  Identities=19%  Similarity=0.108  Sum_probs=136.1

Q ss_pred             CCccceeeEeCCCCCeeE------eeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCC-cccccCCCcCCE
Q 045233           48 DHCKWIGITCNSAGSIIG------LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSI-PSDISALSKLQL  120 (325)
Q Consensus        48 ~~C~w~gv~c~~~~~v~~------l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~-p~~l~~l~~L~~  120 (325)
                      +.|....+.|...+ ++.      -++.+++++.|.+..++...|.++++|++|++  ++|.+...+ +..|..++.+++
T Consensus         6 C~C~~~~i~c~~~~-l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~l--s~n~~~~~i~~~~f~~l~~l~~   82 (242)
T d1xwdc1           6 CHCSNRVFLCQESK-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI--SQNDVLEVIEADVFSNLPKLHE   82 (242)
T ss_dssp             EEECSSEEEEESCS-CSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEE--ESCTTCCEECSSSEESCTTCCE
T ss_pred             CCCcCCEEEEeCCC-CCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhh--ccccccceeecccccccccccc
Confidence            45778889996432 111      25677888889999999888999999999999  888887654 446888999999


Q ss_pred             Eeccc-CCCCCCCchhhcCCcccceeecccCcCCCcCch-hccCCCCCcEEEcCcC-----------CC-CCCcEEEccC
Q 045233          121 LDLSL-NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS-TLARLTNLKYLDLKVT-----------SM-KNLTWLDISN  186 (325)
Q Consensus       121 L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~n-----------~l-~~L~~L~Ls~  186 (325)
                      +++.. |.+....+..|.++++|+++++++|+++...+. .+..+..+..+...++           .+ ..++.|++++
T Consensus        83 l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          83 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             EEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             ccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            98864 677767778899999999999999999843221 2333444544444443           12 3677789999


Q ss_pred             CcCCCCCchhhhCCCCCCEE-ECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233          187 NKIEGSIPGELTELSRPDCL-SLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       187 n~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                      |+++...+.. ...+++..+ ++++|+++...+..|.++++|+.|++++|++..
T Consensus       163 n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         163 NGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             SCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred             cccccccccc-ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc
Confidence            9988544443 445555544 567788886555678889999999999998763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=9.2e-14  Score=125.08  Aligned_cols=153  Identities=27%  Similarity=0.418  Sum_probs=114.7

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                      +.++++.|.+..++  .+..+++|+.|++  .+|.+.+..+  +..+++|++|++++|.+++. + .+..++.++.++++
T Consensus       222 ~~L~l~~n~l~~~~--~l~~l~~L~~L~l--~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~  293 (384)
T d2omza2         222 DELSLNGNQLKDIG--TLASLTNLTDLDL--ANNQISNLAP--LSGLTKLTELKLGANQISNI-S-PLAGLTALTNLELN  293 (384)
T ss_dssp             CEEECCSSCCCCCG--GGGGCTTCSEEEC--CSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECC
T ss_pred             CEEECCCCCCCCcc--hhhcccccchhcc--ccCccCCCCc--ccccccCCEeeccCcccCCC-C-cccccccccccccc
Confidence            34455566655554  3667888888888  7777776433  77788888888888888743 3 26778888888888


Q ss_pred             cCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCC
Q 045233          149 NNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPF  219 (325)
Q Consensus       149 ~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  219 (325)
                      .|++++ + ..+..+++++.|++++|         .+++|++|++++|++++ ++ .+.++++|++|++++|++++..| 
T Consensus       294 ~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         294 ENQLED-I-SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             SSCCSC-C-GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             cccccc-c-cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-
Confidence            888874 3 34777888888888877         55678888888888874 44 57888888888888888886544 


Q ss_pred             cccCCCCCcEEEccCC
Q 045233          220 SNKQLSTMYIVRLSPN  235 (325)
Q Consensus       220 ~~~~l~~L~~L~l~~N  235 (325)
                       +.++++|+.|++++|
T Consensus       369 -l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 -LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GTTCTTCSEEECCCE
T ss_pred             -hccCCCCCEeeCCCC
Confidence             778888888888876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.7e-14  Score=108.46  Aligned_cols=118  Identities=26%  Similarity=0.280  Sum_probs=83.6

Q ss_pred             CEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcC
Q 045233           93 ESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK  172 (325)
Q Consensus        93 ~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  172 (325)
                      |.|++  ++|+++.. + .+..+++|++|++++|.++ .+|+.+..+++|+.|++++|+++ .+| .+..+++|      
T Consensus         1 R~L~L--s~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L------   67 (124)
T d1dcea3           1 RVLHL--AHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRL------   67 (124)
T ss_dssp             SEEEC--TTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSC------
T ss_pred             CEEEc--CCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-cccccccc------
Confidence            56888  88888743 3 4788888999999999988 67777888899999999999988 445 36655554      


Q ss_pred             cCCCCCCcEEEccCCcCCCCC-chhhhCCCCCCEEECCCCcCCCCC---CCcccCCCCCcEE
Q 045233          173 VTSMKNLTWLDISNNKIEGSI-PGELTELSRPDCLSLSANKLSGPV---PFSNKQLSTMYIV  230 (325)
Q Consensus       173 ~n~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L  230 (325)
                             ++|++++|+++... ...+..+++|+.+++++|+++...   ......+++++.+
T Consensus        68 -------~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          68 -------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -------CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -------CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                   44566666666432 256788888999999999887432   2223445666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.1e-13  Score=116.17  Aligned_cols=153  Identities=28%  Similarity=0.386  Sum_probs=123.7

Q ss_pred             ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233           68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL  147 (325)
Q Consensus        68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  147 (325)
                      |+.++++.|.+..+.  ++..+++|+.+++  ++|.++. + +.+..+++|++++++++...+.  ..+...+.++.+.+
T Consensus        65 L~~L~ls~n~i~~~~--~l~~l~~l~~l~~--~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~  136 (227)
T d1h6ua2          65 LIGLELKDNQITDLA--PLKNLTKITELEL--SGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYL  136 (227)
T ss_dssp             CCEEECCSSCCCCCG--GGTTCCSCCEEEC--CSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             CcEeecCCceeeccc--ccccccccccccc--ccccccc-c-cccccccccccccccccccccc--chhccccchhhhhc
Confidence            344555666665554  4889999999999  7887764 3 3588999999999999988743  33677889999999


Q ss_pred             ccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233          148 GNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP  218 (325)
Q Consensus       148 s~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  218 (325)
                      +++.+...  ..+..+++|+.|++++|         .+++|+.|++++|++++ ++ .+.++++|++|++++|++++..|
T Consensus       137 ~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         137 DLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             CSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG
T ss_pred             hhhhhchh--hhhccccccccccccccccccchhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc
Confidence            99998743  34778899999999987         67899999999999985 44 48899999999999999996433


Q ss_pred             CcccCCCCCcEEEccC
Q 045233          219 FSNKQLSTMYIVRLSP  234 (325)
Q Consensus       219 ~~~~~l~~L~~L~l~~  234 (325)
                        ++++++|+.|++++
T Consensus       213 --l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         213 --LANTSNLFIVTLTN  226 (227)
T ss_dssp             --GTTCTTCCEEEEEE
T ss_pred             --cccCCCCCEEEeeC
Confidence              78999999999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-14  Score=115.17  Aligned_cols=128  Identities=16%  Similarity=0.146  Sum_probs=71.1

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +.+..++++|++  ++|.++.. +..+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++
T Consensus        14 ~~n~~~lr~L~L--~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDL--RGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEEC--TTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             ccCcCcCcEEEC--CCCCCCcc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccc
Confidence            445556666777  66666543 444455666677777777666 332 3566666667777777666433333444444


Q ss_pred             CcEEEcCcCCCCCCcEEEccCCcCCCCC-chhhhCCCCCCEEECCCCcCCCCC---CCcccCCCCCcEEE
Q 045233          166 LKYLDLKVTSMKNLTWLDISNNKIEGSI-PGELTELSRPDCLSLSANKLSGPV---PFSNKQLSTMYIVR  231 (325)
Q Consensus       166 L~~L~l~~n~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~  231 (325)
                      |+.|             ++++|+++... ...+..+++|+++++++|+++...   +..+..+++|+.||
T Consensus        89 L~~L-------------~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTEL-------------ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEE-------------ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccc-------------eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            4443             44444444211 134566677777777777766321   12355666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.6e-13  Score=104.19  Aligned_cols=116  Identities=20%  Similarity=0.226  Sum_probs=87.7

Q ss_pred             cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233           71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN  150 (325)
Q Consensus        71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  150 (325)
                      +++++|.+..++.  +..+++|++|++  ++|.+. .+|+.+..+++|+.|++++|.++ .+| .+..+++|++|++++|
T Consensus         3 L~Ls~n~l~~l~~--l~~l~~L~~L~l--s~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           3 LHLAHKDLTVLCH--LEQLLLVTHLDL--SHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EECTTSCCSSCCC--GGGGTTCCEEEC--CSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             EEcCCCCCCCCcc--cccCCCCCEEEC--CCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            5667777777763  788999999999  899987 56778999999999999999999 455 4899999999999999


Q ss_pred             cCCCcC-chhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCC---CCchhhhCCCCCCEE
Q 045233          151 NLTGPI-PSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEG---SIPGELTELSRPDCL  206 (325)
Q Consensus       151 ~l~~~~-p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~~L  206 (325)
                      +++... ...+..+++|++|             ++++|.++.   ........+++|+.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L-------------~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLL-------------NLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEE-------------ECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEE-------------ECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            998432 2456666666555             555555542   233445557777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.6e-14  Score=113.00  Aligned_cols=122  Identities=18%  Similarity=0.142  Sum_probs=91.8

Q ss_pred             eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233           67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD  146 (325)
Q Consensus        67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  146 (325)
                      .++.+++++|.+..++. .+..+++|+.|++  ++|.+...  +.+..+++|++|++++|+++...+..+..+++|+.|+
T Consensus        19 ~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~L--s~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          19 RDRELDLRGYKIPVIEN-LGATLDQFDAIDF--SDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             SCEEEECTTSCCCSCCC-GGGGTTCCSEEEC--CSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcEEECCCCCCCccCc-cccccccCCEEEC--CCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            34456667888888854 3577999999999  89988754  3588999999999999999965555677899999999


Q ss_pred             cccCcCCCcCc--hhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCC---chhhhCCCCCCEEE
Q 045233          147 LGNNNLTGPIP--STLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSI---PGELTELSRPDCLS  207 (325)
Q Consensus       147 Ls~N~l~~~~p--~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~---p~~~~~l~~L~~L~  207 (325)
                      +++|+++ .++  ..+..+++|             ++|++++|.++...   +..+..+++|+.||
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L-------------~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSL-------------TYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTC-------------CEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ecccccc-cccccccccccccc-------------chhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999998 344  245555554             55566667666322   23578899999887

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.38  E-value=5.2e-12  Score=111.72  Aligned_cols=73  Identities=25%  Similarity=0.327  Sum_probs=41.1

Q ss_pred             cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233           69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG  148 (325)
Q Consensus        69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  148 (325)
                      +.++++.|.+..++..    +.+|+.|++  .+|.++. ++. +  .+.|++|++++|.+. .+|. ++.+++|++|+++
T Consensus        61 ~~L~Ls~N~l~~lp~~----~~~L~~L~l--~~n~l~~-l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          61 ESLVASCNSLTELPEL----PQSLKSLLV--DNNNLKA-LSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             SEEECCSSCCSSCCCC----CTTCCEEEC--CSSCCSC-CCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CEEECCCCCCcccccc----hhhhhhhhh--hhcccch-hhh-h--ccccccccccccccc-cccc-hhhhccceeeccc
Confidence            3344445555554431    346666666  5555442 121 1  134777777777776 4553 4667777777777


Q ss_pred             cCcCC
Q 045233          149 NNNLT  153 (325)
Q Consensus       149 ~N~l~  153 (325)
                      +|.+.
T Consensus       129 ~~~~~  133 (353)
T d1jl5a_         129 NNSLK  133 (353)
T ss_dssp             SSCCS
T ss_pred             ccccc
Confidence            77654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=5.6e-15  Score=121.77  Aligned_cols=102  Identities=30%  Similarity=0.338  Sum_probs=43.1

Q ss_pred             ccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCc
Q 045233          110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLT  180 (325)
Q Consensus       110 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~  180 (325)
                      .++..+++|++|++++|+++ .++ .+..+++|++|+|++|+++ .+|..+..+++|+.|++++|         .+++|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~  118 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLR  118 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSS
T ss_pred             hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccccccccccccc
Confidence            34444455555555555554 222 2444455555555555554 33332222222222222222         112233


Q ss_pred             EEEccCCcCCCCCc-hhhhCCCCCCEEECCCCcCC
Q 045233          181 WLDISNNKIEGSIP-GELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       181 ~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~  214 (325)
                      .|++++|+++.... ..+..+++|+.|++++|+++
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccc
Confidence            34444444442211 23455555555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3e-13  Score=117.54  Aligned_cols=148  Identities=20%  Similarity=0.195  Sum_probs=118.0

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC-CCCCC-CchhhcCCcccceeecccC-cCCCc-Cchhcc
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN-RLSGT-IPSNIGNLRNLVHLDLGNN-NLTGP-IPSTLA  161 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~  161 (325)
                      +..+++|++|++  .++.+.+..+..+..+++|++|+++++ .++.. +.....++++|++|+++++ .++.. ++..+.
T Consensus        67 ~~~c~~L~~L~L--~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~  144 (284)
T d2astb2          67 LSQCSKLQNLSL--EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  144 (284)
T ss_dssp             HTTBCCCSEEEC--TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHhCCCcccccc--cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhc
Confidence            778999999999  888888777788889999999999996 55521 2333467899999999986 45422 222333


Q ss_pred             -CCCCCcEEEcCcC--------------CCCCCcEEEccCC-cCCCCCchhhhCCCCCCEEECCCC-cCCCCCCCcccCC
Q 045233          162 -RLTNLKYLDLKVT--------------SMKNLTWLDISNN-KIEGSIPGELTELSRPDCLSLSAN-KLSGPVPFSNKQL  224 (325)
Q Consensus       162 -~l~~L~~L~l~~n--------------~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l  224 (325)
                       ..++|+.|+++++              .+++|++|++++| .+++..+..+.++++|++|++++| .+++.....++++
T Consensus       145 ~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence             3578999999864              5789999999986 578777788999999999999995 6776666678899


Q ss_pred             CCCcEEEccCC
Q 045233          225 STMYIVRLSPN  235 (325)
Q Consensus       225 ~~L~~L~l~~N  235 (325)
                      ++|+.|+++++
T Consensus       225 ~~L~~L~l~~~  235 (284)
T d2astb2         225 PTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeeeCC
Confidence            99999999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.3e-12  Score=99.52  Aligned_cols=112  Identities=20%  Similarity=0.063  Sum_probs=82.2

Q ss_pred             CcCCEEecccCCCCCCCchhhcCCcccceeecccC-cCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCc
Q 045233          116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN-NLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIP  194 (325)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p  194 (325)
                      ...+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+             .|++++|+|+...|
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~-------------~L~Ls~N~l~~i~~   73 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR-------------NLTIVKSGLRFVAP   73 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS-------------EEECCSSCCCEECT
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccC-------------cceeeccccCCccc
Confidence            34456777777776 56777777888888888765 47755556676655544             45666777776778


Q ss_pred             hhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233          195 GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF  242 (325)
Q Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~  242 (325)
                      ..|..+++|+.|+|++|+|+...+..+.. ..|+.|++++|++.|...
T Consensus        74 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          74 DAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGG
T ss_pred             ccccccccccceeccCCCCcccChhhhcc-ccccccccCCCcccCCch
Confidence            88999999999999999999554555544 479999999999987553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.6e-12  Score=107.52  Aligned_cols=167  Identities=19%  Similarity=0.161  Sum_probs=123.2

Q ss_pred             ccccccCCccccc-cCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCc-hhhcCCccccee
Q 045233           68 LSWYDVDLNAQAQ-LSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP-SNIGNLRNLVHL  145 (325)
Q Consensus        68 l~~l~~~~n~~~~-l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L  145 (325)
                      |+.++++.|.+.. ++...|.+++.++++.+. ..|.+....+..+.++++|+++++++|.+....+ ..+..+..+..+
T Consensus        55 L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~-~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~  133 (242)
T d1xwdc1          55 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIE-KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD  133 (242)
T ss_dssp             CCEEEEESCTTCCEECSSSEESCTTCCEEEEE-CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEE
T ss_pred             hhhhhhccccccceeecccccccccccccccc-ccccccccccccccccccccccccchhhhcccccccccccccccccc
Confidence            4445555665543 455568889999999983 2456777777889999999999999999974322 234456677777


Q ss_pred             ecccCcCCCcCchhccCCC-CCcEEEcCcCCC----------CCCcEE-EccCCcCCCCCchhhhCCCCCCEEECCCCcC
Q 045233          146 DLGNNNLTGPIPSTLARLT-NLKYLDLKVTSM----------KNLTWL-DISNNKIEGSIPGELTELSRPDCLSLSANKL  213 (325)
Q Consensus       146 ~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~n~l----------~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l  213 (325)
                      ...++.+....+..+..++ .++.|+++.|.+          +++..+ ++++|+++...+..|.++++|+.|++++|++
T Consensus       134 ~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC
T ss_pred             cccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcC
Confidence            7788888865566677664 788899988833          344444 5788889965566789999999999999999


Q ss_pred             CCCCCCcccCCCCCcEEEccCC
Q 045233          214 SGPVPFSNKQLSTMYIVRLSPN  235 (325)
Q Consensus       214 ~~~~p~~~~~l~~L~~L~l~~N  235 (325)
                      +...+..+.++++|+.+++.+.
T Consensus       214 ~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         214 HSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CCCCSSSCTTCCEEESSSEESS
T ss_pred             CccCHHHHcCCcccccCcCCCC
Confidence            9666667888888887777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5e-11  Score=93.73  Aligned_cols=66  Identities=23%  Similarity=0.186  Sum_probs=42.6

Q ss_pred             cCCCCCCCEEEeccccCc-CCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC
Q 045233           86 FSCFPNLESLRIQAYYYG-FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT  153 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~-~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  153 (325)
                      +..+++|++|++  .+|+ +....++.|.++++|+.|++++|+|+...+..|..+++|++|+|++|+++
T Consensus        27 l~~l~~l~~L~l--~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          27 LPGAENLTELYI--ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             SCSCSCCSEEEC--CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             ccCccccCeeec--CCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            455666777776  4443 55444555666777777777777776555666666777777777777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=2.1e-13  Score=112.12  Aligned_cols=120  Identities=18%  Similarity=0.241  Sum_probs=86.7

Q ss_pred             cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN  165 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  165 (325)
                      +..+++|++|++  ++|.+.. ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++. + +.+..+++
T Consensus        44 l~~L~~L~~L~L--s~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~  116 (198)
T d1m9la_          44 LSTLKACKHLAL--STNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVN  116 (198)
T ss_dssp             HHHTTTCCEEEC--SEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHH
T ss_pred             HhcccccceeEC--cccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccc
Confidence            666788888888  7777764 33 4777888888888888887 556555566778888888888873 3 34777788


Q ss_pred             CcEEEcCcC------------CCCCCcEEEccCCcCCCCCch----------hhhCCCCCCEEECCCCcCC
Q 045233          166 LKYLDLKVT------------SMKNLTWLDISNNKIEGSIPG----------ELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       166 L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~L~~N~l~  214 (325)
                      |+.|++++|            .+++|+.|++++|.+....+.          .+..+++|+.||  +..++
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            888888877            567888999999987643332          155677787775  44444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.7e-12  Score=108.82  Aligned_cols=150  Identities=22%  Similarity=0.170  Sum_probs=117.5

Q ss_pred             CCCCCCEEEeccccCcCCCC-CcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC-cCCCc-CchhccCCC
Q 045233           88 CFPNLESLRIQAYYYGFTGS-IPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN-NLTGP-IPSTLARLT  164 (325)
Q Consensus        88 ~l~~L~~L~l~~~~n~~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~  164 (325)
                      ...+|++|++  +++.+... ++..+..+++|++|++++|.+++..+..+..+++|++|+++++ .++.. +......++
T Consensus        44 ~~~~L~~LdL--s~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDL--SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEEC--TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEEC--CCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            4568999999  77777644 3455788999999999999998888888999999999999995 56532 223345789


Q ss_pred             CCcEEEcCcC--------------CCCCCcEEEccCC--cCCCC-CchhhhCCCCCCEEECCCC-cCCCCCCCcccCCCC
Q 045233          165 NLKYLDLKVT--------------SMKNLTWLDISNN--KIEGS-IPGELTELSRPDCLSLSAN-KLSGPVPFSNKQLST  226 (325)
Q Consensus       165 ~L~~L~l~~n--------------~l~~L~~L~Ls~n--~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~  226 (325)
                      +|++|+++++              ..++|+.|+++++  .++.. +.....++++|++|++++| .+++..+..+.++++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            9999999986              3478999999975  34432 3344567899999999986 477777778899999


Q ss_pred             CcEEEccCCC-CCc
Q 045233          227 MYIVRLSPNK-GLG  239 (325)
Q Consensus       227 L~~L~l~~N~-~~~  239 (325)
                      |++|+++++. ++.
T Consensus       202 L~~L~L~~C~~i~~  215 (284)
T d2astb2         202 LQHLSLSRCYDIIP  215 (284)
T ss_dssp             CCEEECTTCTTCCG
T ss_pred             CCEEECCCCCCCCh
Confidence            9999999954 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.3e-12  Score=119.53  Aligned_cols=86  Identities=27%  Similarity=0.329  Sum_probs=42.6

Q ss_pred             CCCCCCCEEEeccccCcCCC----CCcccccCCCcCCEEecccCCCCCC----Cchhhc-CCcccceeecccCcCCCc--
Q 045233           87 SCFPNLESLRIQAYYYGFTG----SIPSDISALSKLQLLDLSLNRLSGT----IPSNIG-NLRNLVHLDLGNNNLTGP--  155 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~--  155 (325)
                      ..+++++.|+|  ++|.++.    .++..+..+++|++|||++|.++..    +...+. ...+|++|+|++|+++..  
T Consensus        24 ~~l~~l~~L~L--~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          24 PLLQQCQVVRL--DDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHTTCSEEEE--ESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhCCCCCEEEe--CCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            34556666666  5555442    2233345556666666666655411    111111 123466666666665532  


Q ss_pred             --CchhccCCCCCcEEEcCcC
Q 045233          156 --IPSTLARLTNLKYLDLKVT  174 (325)
Q Consensus       156 --~p~~~~~l~~L~~L~l~~n  174 (325)
                        ++..+..+++|++|++++|
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSS
T ss_pred             ccccchhhccccccccccccc
Confidence              2334555566666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.02  E-value=7.7e-11  Score=104.58  Aligned_cols=38  Identities=24%  Similarity=0.245  Sum_probs=18.9

Q ss_pred             CCCcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCcCC
Q 045233          177 KNLTWLDISNNKIEGS----IPGELTELSRPDCLSLSANKLS  214 (325)
Q Consensus       177 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~  214 (325)
                      ++|+.|++++|.++..    +...+...++|++|++++|.|+
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            4555555555554422    2233444555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.94  E-value=1.6e-10  Score=102.50  Aligned_cols=153  Identities=17%  Similarity=0.093  Sum_probs=88.2

Q ss_pred             cCCCCCCCEEEeccccCcCCCC----------CcccccCCCcCCEEecccCCCCCC----CchhhcCCcccceeecccCc
Q 045233           86 FSCFPNLESLRIQAYYYGFTGS----------IPSDISALSKLQLLDLSLNRLSGT----IPSNIGNLRNLVHLDLGNNN  151 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~----------~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~  151 (325)
                      +...++|+.+++  +.+.....          +...+..+++|+.|++++|.++..    +...+...++|+.|++++|.
T Consensus        55 l~~~~~L~~l~l--~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          55 IASKKDLEIAEF--SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TTTCTTCCEEEC--CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHhCCCCCEEEC--CCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            556677777777  44332211          112244566777777777776643    33334456677777777776


Q ss_pred             CCCcCch-------------hccCCCCCcEEEcCcC---------------CCCCCcEEEccCCcCCCC-----Cchhhh
Q 045233          152 LTGPIPS-------------TLARLTNLKYLDLKVT---------------SMKNLTWLDISNNKIEGS-----IPGELT  198 (325)
Q Consensus       152 l~~~~p~-------------~~~~l~~L~~L~l~~n---------------~l~~L~~L~Ls~n~l~~~-----~p~~~~  198 (325)
                      +......             .....+.|+.+++++|               ..+.|+.|++++|+++..     +...+.
T Consensus       133 l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~  212 (344)
T d2ca6a1         133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  212 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             ccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhc
Confidence            6421110             1134556777777666               235677777777776532     223355


Q ss_pred             CCCCCCEEECCCCcCCCC----CCCcccCCCCCcEEEccCCCCCch
Q 045233          199 ELSRPDCLSLSANKLSGP----VPFSNKQLSTMYIVRLSPNKGLGS  240 (325)
Q Consensus       199 ~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~~~~  240 (325)
                      ..++|+.|++++|.++..    +...+..+++|+.|++++|.+...
T Consensus       213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             chhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            567777777777776532    233455667777777777776543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.80  E-value=2.9e-08  Score=86.94  Aligned_cols=129  Identities=22%  Similarity=0.264  Sum_probs=85.8

Q ss_pred             CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233           90 PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL  169 (325)
Q Consensus        90 ~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  169 (325)
                      .++++|++  +++.++ .+|+.   .++|++|++++|+|+ .+|+.   +.+|+.|++++|+++ .+++.   .+.|++|
T Consensus        38 ~~l~~LdL--s~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELEL--NNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYL  103 (353)
T ss_dssp             HTCSEEEC--TTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEE
T ss_pred             cCCCEEEe--CCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccc
Confidence            46889999  888876 46753   478999999999998 67765   457899999999988 44431   1357777


Q ss_pred             EcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233          170 DLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL  238 (325)
Q Consensus       170 ~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~  238 (325)
                      ++++|         .+++|+.|++++|.+... +.   ....+..+.+..+....  +..+..++.++.++++.|...
T Consensus       104 ~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         104 GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             ECCSSCCSSCCCCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccchhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceeccccccccc
Confidence            77666         345666666666666532 21   23345555555444432  334566777888888877654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.2e-09  Score=96.43  Aligned_cols=126  Identities=21%  Similarity=0.108  Sum_probs=60.2

Q ss_pred             CCCcCCEEecccCCCCCC----CchhhcCCcccceeecccCcCCCcCchh----c-cCCCCCcEEEcCcC----------
Q 045233          114 ALSKLQLLDLSLNRLSGT----IPSNIGNLRNLVHLDLGNNNLTGPIPST----L-ARLTNLKYLDLKVT----------  174 (325)
Q Consensus       114 ~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~-~~l~~L~~L~l~~n----------  174 (325)
                      ....++.+++++|.+...    ....+...+.++.+++++|.++......    + .....|+.+++++|          
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            345555666665555421    1222334455555566555554211111    1 12235555555554          


Q ss_pred             -----CCCCCcEEEccCCcCCCC----Cchhhh-CCCCCCEEECCCCcCCCC----CCCcccCCCCCcEEEccCCCCCc
Q 045233          175 -----SMKNLTWLDISNNKIEGS----IPGELT-ELSRPDCLSLSANKLSGP----VPFSNKQLSTMYIVRLSPNKGLG  239 (325)
Q Consensus       175 -----~l~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~~~  239 (325)
                           ..++|++|+|++|++++.    +++.+. ..+.|+.|+|++|+|++.    ++..+..+++|++|++++|++..
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence                 223566666666665432    222222 244566666666666531    22334445566666666666553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.4e-08  Score=79.93  Aligned_cols=40  Identities=35%  Similarity=0.409  Sum_probs=19.9

Q ss_pred             CCCcCCEEecccCCCCCC--CchhhcCCcccceeecccCcCC
Q 045233          114 ALSKLQLLDLSLNRLSGT--IPSNIGNLRNLVHLDLGNNNLT  153 (325)
Q Consensus       114 ~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~  153 (325)
                      .+++|++|++++|+++..  ++..+..+++|+.|+|++|+++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            445555555555555532  1233444555555555555555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3.4e-07  Score=71.65  Aligned_cols=83  Identities=24%  Similarity=0.181  Sum_probs=61.5

Q ss_pred             cCCCCCCCEEEeccccCcCCCCC--cccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCch-----
Q 045233           86 FSCFPNLESLRIQAYYYGFTGSI--PSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS-----  158 (325)
Q Consensus        86 ~~~l~~L~~L~l~~~~n~~~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-----  158 (325)
                      ...+++|++|++  ++|+++..-  +..+..+++|+.|++++|.++...+-.+....+|+.|++++|.+......     
T Consensus        61 ~~~~~~L~~L~L--s~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          61 EENIPELLSLNL--SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHCTTCCCCCC--CSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHhCCCCCEeeC--CCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            356899999999  999998653  34567899999999999999954433444556799999999999855432     


Q ss_pred             --hccCCCCCcEEE
Q 045233          159 --TLARLTNLKYLD  170 (325)
Q Consensus       159 --~~~~l~~L~~L~  170 (325)
                        .+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              244566666553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=5.5e-06  Score=64.83  Aligned_cols=58  Identities=10%  Similarity=0.019  Sum_probs=33.3

Q ss_pred             CcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCcCCCC-------CCCcccCCCCCcEEEccCCC
Q 045233          179 LTWLDISNNKIEGS----IPGELTELSRPDCLSLSANKLSGP-------VPFSNKQLSTMYIVRLSPNK  236 (325)
Q Consensus       179 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~-------~p~~~~~l~~L~~L~l~~N~  236 (325)
                      |++|++++|.++..    +...+...+.|++|++++|.+...       +...+...++|+.++++.+.
T Consensus        74 L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          74 LRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             ccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            44445555554432    223445556677777777765422       23345567788888887764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=8.3e-06  Score=63.75  Aligned_cols=111  Identities=12%  Similarity=0.063  Sum_probs=69.8

Q ss_pred             CCCCCCCEEEeccccC-cCCCC----CcccccCCCcCCEEecccCCCCC----CCchhhcCCcccceeecccCcCCCcCc
Q 045233           87 SCFPNLESLRIQAYYY-GFTGS----IPSDISALSKLQLLDLSLNRLSG----TIPSNIGNLRNLVHLDLGNNNLTGPIP  157 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~n-~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p  157 (325)
                      .+.++|++|++  +++ .+...    +-..+...+.|++|++++|.+..    .+.+.+...+.|++|+|++|.++....
T Consensus        12 ~n~~~L~~L~L--~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          12 EDDTDLKEVNI--NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             TTCSSCCEEEC--TTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             hCCCCCcEEEe--CCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            34578888888  553 34321    22346667888889998888862    344455667788888898888874322


Q ss_pred             ----hhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCC-------CCchhhhCCCCCCEEECCCCc
Q 045233          158 ----STLARLTNLKYLDLKVTSMKNLTWLDISNNKIEG-------SIPGELTELSRPDCLSLSANK  212 (325)
Q Consensus       158 ----~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~-------~~p~~~~~l~~L~~L~L~~N~  212 (325)
                          ..+...++             |++|++++|.+..       .+...+...+.|+.|+++.+.
T Consensus        90 ~~l~~aL~~n~s-------------L~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          90 ARLLRSTLVTQS-------------IVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHTTTTCC-------------CSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhCCc-------------CCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                23444444             4555555554432       134556667889999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.45  E-value=2.8e-05  Score=60.39  Aligned_cols=59  Identities=17%  Similarity=0.155  Sum_probs=32.0

Q ss_pred             CcEEEccCCcCCCC----CchhhhCCCCCCEEEC--CCCcCCC----CCCCcccCCCCCcEEEccCCCC
Q 045233          179 LTWLDISNNKIEGS----IPGELTELSRPDCLSL--SANKLSG----PVPFSNKQLSTMYIVRLSPNKG  237 (325)
Q Consensus       179 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~----~~p~~~~~l~~L~~L~l~~N~~  237 (325)
                      ++.+++++|.+...    +.+.+...+.|+.++|  ++|.+..    .+...+...++|+.|+++.+..
T Consensus        76 l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          76 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             chhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            33444444544322    2234555666766544  3455543    2334456777888888877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.23  E-value=7.7e-05  Score=57.83  Aligned_cols=114  Identities=13%  Similarity=0.133  Sum_probs=71.5

Q ss_pred             CCCCCCCEEEecccc-CcCCCC----CcccccCCCcCCEEecccCCCCCC----CchhhcCCcccceeecccCcCCCcC-
Q 045233           87 SCFPNLESLRIQAYY-YGFTGS----IPSDISALSKLQLLDLSLNRLSGT----IPSNIGNLRNLVHLDLGNNNLTGPI-  156 (325)
Q Consensus        87 ~~l~~L~~L~l~~~~-n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-  156 (325)
                      .+.+.|++|++  ++ +.++..    +-..+...++|++|++++|.++..    +...+...++++.+++++|.++... 
T Consensus        14 ~~~~~L~~L~L--~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          14 NNDPDLEEVNL--NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             TTCTTCCEEEC--TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             hcCCCCcEEEc--CCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            45678888888  54 334321    223455678888888888887632    3334556678888888888876322 


Q ss_pred             ---chhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCC----CCchhhhCCCCCCEEECCCCcC
Q 045233          157 ---PSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEG----SIPGELTELSRPDCLSLSANKL  213 (325)
Q Consensus       157 ---p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~N~l  213 (325)
                         ...+...++|+.+++           ++++|.+..    .+.+.+...+.|+.|+++.+..
T Consensus        92 ~~l~~~l~~~~~L~~l~L-----------~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          92 LALVEALQSNTSLIELRI-----------DNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHGGGGCSSCCEEEC-----------CCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCccccEEee-----------ccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence               234455555555433           445566653    2445566788999999876653

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00031  Score=60.14  Aligned_cols=35  Identities=11%  Similarity=0.045  Sum_probs=25.6

Q ss_pred             hcCCcceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          290 TEGFDYLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       290 t~nf~~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      +-+|+.+||+|+||+||+|++.. ......||||..
T Consensus        28 ~~~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~   63 (311)
T d1r0pa_          28 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL   63 (311)
T ss_dssp             EEEEEEEEEEETTEEEEEEEECC----CEEEEEEEE
T ss_pred             eeccceEEeecCCeEEEEEEEECCCCEEEEEEEEEE
Confidence            44677899999999999999831 122347899974

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=96.46  E-value=0.00077  Score=57.89  Aligned_cols=28  Identities=4%  Similarity=0.036  Sum_probs=25.4

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        41 ~~LG~G~fg~V~~a~~~--~~~~~vAiK~i   68 (328)
T d3bqca1          41 RKLGRGKYSEVFEAINI--TNNEKVVVKIL   68 (328)
T ss_dssp             EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred             EEEecCcCeEEEEEEEC--CCCCEEEEEEE
Confidence            78999999999999874  78999999985

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.00094  Score=58.06  Aligned_cols=32  Identities=16%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+|+||.||+++-.  .+|+.||||++
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~--~~g~~~AvK~i   74 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHK--ESGNHYAMKIL   74 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEEC--CCCCEEEEEEE
Confidence            3454  68999999999999874  78999999975

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=96.22  E-value=0.0011  Score=57.61  Aligned_cols=32  Identities=16%  Similarity=0.087  Sum_probs=27.3

Q ss_pred             cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ++|.  ..||+||||.||+++-.  .+|+.||||++
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~--~~g~~vAvK~i   59 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTER--ATGNNFAAKFV   59 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEET--TTTEEEEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEEC--CCCCEEEEEEE
Confidence            3454  78999999999999874  78999999986

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=95.95  E-value=0.0019  Score=56.10  Aligned_cols=28  Identities=14%  Similarity=0.080  Sum_probs=25.2

Q ss_pred             ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+++-.  .+|+.||||++
T Consensus        35 ~~lG~G~fg~V~~a~~~--~~~~~vAiK~i   62 (352)
T d1koba_          35 EELGSGAFGVVHRCVEK--ATGRVFVAKFI   62 (352)
T ss_dssp             EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred             EEEecCCCeEEEEEEEC--CCCCEEEEEEE
Confidence            78999999999999864  78999999975

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0026  Score=54.45  Aligned_cols=31  Identities=10%  Similarity=0.058  Sum_probs=25.2

Q ss_pred             cceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFR-SSTGTFLIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~  324 (325)
                      -..||+|+||.||+++-.. ..+|++||||.+
T Consensus        29 ~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i   60 (322)
T d1vzoa_          29 LKVLGTGAYGKVFLVRKISGHDTGKLYAMKVL   60 (322)
T ss_dssp             EEEEEETTTEEEEEEEECSSTTTTCEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEECccCCCCcEEEEEEE
Confidence            3599999999999997531 256899999975

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0043  Score=52.39  Aligned_cols=31  Identities=16%  Similarity=0.146  Sum_probs=22.7

Q ss_pred             cceeecCCCcEEEEEeeecC-CCCcEEEEEEe
Q 045233          294 DYLIQFPKFESFALSFLFRS-STGTFLIIIFY  324 (325)
Q Consensus       294 ~~~ig~g~~g~vy~g~l~~~-~~~~~vav~~~  324 (325)
                      .+.||+|+||.||+|+.... .....||||..
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~   62 (299)
T d1jpaa_          31 EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTL   62 (299)
T ss_dssp             EEEEEECSSSEEEEEEECC---CCEEEEEEEC
T ss_pred             eeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEE
Confidence            37899999999999998411 12347899864

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0097  Score=50.70  Aligned_cols=30  Identities=3%  Similarity=0.046  Sum_probs=22.9

Q ss_pred             ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233          295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY  324 (325)
Q Consensus       295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~  324 (325)
                      ..||+|+||.||+|+...   ...+..||||..
T Consensus        43 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~   75 (325)
T d1rjba_          43 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKML   75 (325)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEE
T ss_pred             eEEeeCCCeEEEEEEEcCCCcccceeEEEEEEe
Confidence            789999999999999741   122347899864