Citrus Sinensis ID: 045245

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MGNEHNVIYQNCLQLNSILEPSLCTQMNRDIKSFLFLAFIFCKAGRQQLVFDKSMLSTAVIWYGCLTILARHEYYRDMERWLIVVHPSDCLIFAGFSRAAGFWIPQVDHRGKSNFISKNLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANYD
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccHHHHHccccccccEEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHcccccccccccHHHHcccccEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccEEEEEccccccccEEcccccccccHHHHHHccEEEEEEcccccccEEEEEccccccHHHHHHHHHHHcccEEEEcccEEEEcccccccccccHHHHccccccEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MGNEHNVIYQNClqlnsilepslctqMNRDIKSFLFLAFIFCKAGRQQLVFDKSMLSTAVIWYGCLTILARHEYYRDMERWLIvvhpsdclifagfsraagfwipqvdhrgksnfiskNLVYTRVITMNFNKKKVVFVMGatatgktkLSIDLAIHFsgeainsnkiqvykgldiatnkvtaserqgvphhllgfvdpeadypeeeFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANYD
Flexible Loop (DISEMBL)
MGNEHNVIYQNCLQLNSILEPSLCTQMNRDIKSFLFLAFIFCKAGRQQLVFDKSMLSTAVIWYGCLTILARHEYYRDMERWLIVVHPSDCLIFAGFSRAAGFwipqvdhrgksnfiskNLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANYD
Low Complexity Region (SEG)
MGNEHNVIYQNCLQLNSILEPSLCTQMNRDIKSFLFLAFIFCKAGRQQLVFDKSMLSTAVIWYGCLTILARHEYYRDMERWLIVVHPSDCLIFAGFSRAAGFWIPQVDHRGKSNFISKNLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANYD
Disordered region (IsUnstruct)
*****NVIYQNCLQLNSILEPSLCTQMNRDIKSFLFLAFIFCKAGRQQLVFDKSMLSTAVIWYGCLTILARHEYYRDMERWLIVVHPSDCLIFAGFSRAAGFWIPQVDHRGKSNFISKNLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFR****
Disordered Region (DISOPRED)
****HNV*YQNCLQLNSILEPSLCTQMNRDIKSFLFLAFIFCKAGRQQLVFDKSMLSTAVIWYGCLTILARHEYYRDMERWLIVVHPSDCLIFAGFSRAAGFWIPQVDHRG************************VFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI********
Disordered Region (DISEMBL)
MGNEHNVIYQNCLQLNSILEPSLCTQMNRDIKSFLFLAFIFCKAGRQQLVFDKSMLSTAVIWYGCLTILARHEYYRDMERWLIVVHPSDCLIFAGFSRAAGFWIPQVDHRGKSNFISKNLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANYD
Disordered Region (DISPRO)
**NEHNVIYQNCLQLNSILEPSLCTQMNRDIKSFLFLAFIFCKAGRQQLVFDKSMLSTAVIWYGCLTILARHEYYRDMERWLIVVHPSDCLIFAGFSRAAGFWIPQVDHRGKSNFISKNLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIIN******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNEHNVIYQNCLQLNSILEPSLCTQMNRDIKSFLFLAFIFCKAGRQQLVFDKSMLSTAVIWYGCLTILARHEYYRDMERWLIVVHPSDCLIFAGFSRAAGFWIPQVDHRGKSNFISKNLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANYD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q93WC9	336	Adenylate isopentenyltran	yes	no	0.478	0.357	0.558	1e-33
Q94ID2	330	Adenylate isopentenyltran	no	no	0.474	0.360	0.586	6e-33
Q94ID1	329	Adenylate isopentenyltran	no	no	0.478	0.364	0.561	6e-30
Q5GHF7	329	Adenylate isopentenyltran	N/A	no	0.442	0.337	0.526	3e-26
Q9LJL4	330	Adenylate isopentenyltran	no	no	0.438	0.333	0.531	2e-25
Q9SB60	318	Adenylate isopentenyltran	no	no	0.434	0.342	0.518	1e-24
B9DPA1	316	tRNA dimethylallyltransfe	yes	no	0.454	0.360	0.473	4e-24
Q94ID3	357	Adenylate isopentenyltran	no	no	0.434	0.305	0.481	4e-24
B1YMH0	312	tRNA dimethylallyltransfe	yes	no	0.454	0.365	0.456	9e-23
Q9ZUX7	466	tRNA dimethylallyltransfe	no	no	0.406	0.218	0.450	2e-22

>sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=IPT3 PE=1 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 87/120 (72%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           K KVV +MGAT TGK++LS+D+A  F  E INS+KIQV++GLDI TNK+T+ E  GVPHH
Sbjct: 40  KDKVVVIMGATGTGKSRLSVDIATRFRAEIINSDKIQVHQGLDIVTNKITSEESCGVPHH 99

Query: 192 LLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANYD 251
           LLG + PEAD     +C  A  +I+ ++  G L IIVGGSN+Y+EALV+D    FR+ YD
Sbjct: 100 LLGVLPPEADLTAANYCHMANLSIESVLNRGKLPIIVGGSNSYVEALVDDKENKFRSRYD 159

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 4

>sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=2

 Score =  140 bits (354), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 2/121 (1%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           K KVVFVMGAT TGK++L+IDLA  F  E +NS+KIQVYKGLDI TNKVT  E  GVPHH
Sbjct: 32  KDKVVFVMGATGTGKSRLAIDLATRFPAEIVNSDKIQVYKGLDIVTNKVTPEESLGVPHH 91

Query: 192 LLGFV-DPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANY 250
           LLG V D   D+  E+F   A+RA++ I++   + II GGSN+YIEALV D  ++FR  Y
Sbjct: 92  LLGTVHDTYEDFTAEDFQREAIRAVESIVQRDRVPIIAGGSNSYIEALVNDC-VDFRLRY 150

Query: 251 D 251
           +
Sbjct: 151 N 151

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q94ID1|IPT7_ARATH Adenylate isopentenyltransferase 7, mitochondrial OS=Arabidopsis thaliana GN=IPT7 PE=2 SV=2

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           K+KV+FVMGAT +GK++L+IDLA  F GE INS+KIQ+YKGLD+ TNKVT  E +GVPHH
Sbjct: 33  KEKVIFVMGATGSGKSRLAIDLATRFQGEIINSDKIQLYKGLDVLTNKVTPKECRGVPHH 92

Query: 192 LLGFVDPEA-DYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANY 250
           LLG  D EA +    ++   A +AI K+  N  L I+ GGSN+YIEALV  S      NY
Sbjct: 93  LLGVFDSEAGNLTATQYSRLASQAISKLSANNKLPIVAGGSNSYIEALVNHSSGFLLNNY 152

Query: 251 D 251
           D
Sbjct: 153 D 153

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q5GHF7|IPT_HUMLU Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 80/112 (71%), Gaps = 1/112 (0%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            K+K++ +MGAT TGK++LSIDLA HF  E INS+K+QVYKGLDI TNK++  +R GVPH
Sbjct: 28  RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 87

Query: 191 HLLGFVDP-EADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           HLLG VDP   +    +F   A +A+ +I     L ++VGGSN++I AL+ D
Sbjct: 88  HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVD 139

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP, ADP and AMP. GMP, IMP, CMP or UMP are not used as substrates.

Humulus lupulus (taxid: 3486)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q9LJL4|IPT8_ARATH Adenylate isopentenyltransferase 8, chloroplastic OS=Arabidopsis thaliana GN=IPT8 PE=2 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 79/111 (71%), Gaps = 1/111 (0%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           K+KVV +MGAT +GK+ LSIDLA  FSGE +NS+KIQ Y GL + TN+++  ER GVPHH
Sbjct: 42  KQKVVVIMGATGSGKSCLSIDLATRFSGEIVNSDKIQFYDGLKVTTNQMSILERCGVPHH 101

Query: 192 LLGFVDP-EADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           LLG + P +++    EF   A R+I +I   G+L II GGSN++I AL+ D
Sbjct: 102 LLGELPPDDSELTTSEFRSLASRSISEITARGNLPIIAGGSNSFIHALLVD 152

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q9SB60|IPT4_ARATH Adenylate isopentenyltransferase 4 OS=Arabidopsis thaliana GN=IPT4 PE=1 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 76/110 (69%), Gaps = 1/110 (0%)

Query: 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL 193
           K+V +MGAT +GK+ LS+DLA+HF  E INS+K+Q Y GL I TN+ T  +R+GVPHHLL
Sbjct: 6   KMVVIMGATGSGKSSLSVDLALHFKAEIINSDKMQFYDGLKITTNQSTIEDRRGVPHHLL 65

Query: 194 GFVDPEA-DYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDS 242
           G ++PEA +    EF   A  AI +I +   L I+ GGSN+YI AL+  S
Sbjct: 66  GELNPEAGEVTAAEFRVMAAEAISEITQRKKLPILAGGSNSYIHALLAKS 115

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP, but not to AMP. Has no DMAPP:tRNA isopentenyltransferase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|B9DPA1|MIAA_STACT tRNA dimethylallyltransferase OS=Staphylococcus carnosus (strain TM300) GN=miaA PE=3 SV=1

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 75/114 (65%)

Query: 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQG 187
           M  NK  +V ++G TA GKT+LSI+LA    GE I+ + IQVY+G+DI T KVT  E QG
Sbjct: 1   MTANKPLLVVIVGPTAVGKTELSIELAKKIGGEIISGDSIQVYRGMDIGTAKVTKEEMQG 60

Query: 188 VPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           VPH+L+  +DP+  +    F E A + I +I E GH+ II GG+  YI++L+ D
Sbjct: 61  VPHYLIDILDPDEPFSAFAFKERAQKLITEITERGHIPIIAGGTGLYIQSLIYD 114

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Staphylococcus carnosus (strain TM300) (taxid: 396513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q94ID3|IPT1_ARATH Adenylate isopentenyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=IPT1 PE=1 SV=2

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 75/110 (68%), Gaps = 1/110 (0%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            K KVV ++GAT  GK++LS+DLA  F  E INS+KIQVY+GL+I TN++T  +R+GVPH
Sbjct: 63  RKDKVVVILGATGAGKSRLSVDLATRFPSEIINSDKIQVYEGLEITTNQITLQDRRGVPH 122

Query: 191 HLLGFVDPE-ADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALV 239
           HLLG ++PE  +    EF   A   + +I     + II GGSN+++ AL+
Sbjct: 123 HLLGVINPEHGELTAGEFRSAASNVVKEITSRQKVPIIAGGSNSFVHALL 172

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP, ADP and AMP. Adenine, adenosine, isopentenylpyrophosphate and 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBDP) are not used as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|B1YMH0|MIAA_EXIS2 tRNA dimethylallyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=miaA PE=3 SV=1

 Score =  107 bits (266), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 73/114 (64%)

Query: 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQG 187
           M+ +K+ V+ ++G TA GKTK  I+LA   +GE I+ + +QVYK +DI + KVT  E +G
Sbjct: 1   MSLSKQPVIVIVGPTAVGKTKTGIELAKKLNGEIISGDSVQVYKQMDIGSAKVTQEEMEG 60

Query: 188 VPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           +PHHLL  VDP+ +     F   A  AID+I   G L IIVGG+  YI A++ D
Sbjct: 61  IPHHLLDLVDPDDEMSVARFQTLARTAIDEIAAKGKLPIIVGGTGLYIRAILYD 114

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) (taxid: 262543)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 74/102 (72%)

Query: 138 VMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVD 197
           +MG T +GK+KL++DLA HF  E IN++ +Q+Y GLD+ TNKVT  E++GVPHHLLG V 
Sbjct: 25  IMGPTGSGKSKLAVDLASHFPVEIINADAMQIYSGLDVLTNKVTVDEQKGVPHHLLGTVS 84

Query: 198 PEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALV 239
            + ++   +F +  +  I++I+   H+ ++VGG++ YI+A+V
Sbjct: 85  SDMEFTARDFRDFTVPLIEEIVSRNHIPVLVGGTHYYIQAVV 126

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
255556115	338	tRNA delta(2)-isopentenylpyrophosphate t	0.482	0.357	0.639	6e-39
356567280	307	PREDICTED: adenylate isopentenyltransfer	0.482	0.394	0.655	1e-38
357456905	302	Isopentenyltransferase [Medicago truncat	0.498	0.413	0.619	3e-38
224080289	333	cytokinin biosynthetic isopentenyltransf	0.482	0.363	0.611	2e-37
357456985	303	Isopentenyltransferase [Medicago truncat	0.478	0.396	0.619	6e-37
357456895	303	Adenylate isopentenyltransferase [Medica	0.482	0.399	0.614	1e-36
166033752	352	isopentenyl transferase IPT7 [Zea mays]	0.482	0.343	0.598	5e-36
359481561	283	PREDICTED: adenylate isopentenyltransfer	0.482	0.427	0.561	1e-35
357456981	288	tRNA dimethylallyltransferase [Medicago	0.478	0.416	0.628	2e-35
357451947	304	Adenylate isopentenyltransferase [Medica	0.498	0.411	0.587	5e-35

>gi|255556115|ref|XP_002519092.1| tRNA delta(2)-isopentenylpyrophosphate transferase, putative [Ricinus communis] gi|223541755|gb|EEF43303.1| tRNA delta(2)-isopentenylpyrophosphate transferase, putative [Ricinus communis]

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/122 (63%), Positives = 96/122 (78%), Gaps = 1/122 (0%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
           NKKK VF++GATATGK+KLS+DLA HF  E INS+KIQVYKGLDI TNK+    R+G+PH
Sbjct: 70  NKKKTVFILGATATGKSKLSVDLASHFDAEIINSDKIQVYKGLDIVTNKIPEDNRKGIPH 129

Query: 191 HLLGFVDPEADYPEEEFCEHALRAIDKIIE-NGHLHIIVGGSNTYIEALVEDSIINFRAN 249
           HLLGF+DPEAD+  ++FC H  +A+  I E NG + IIVGGSN +I ALVED   +F+AN
Sbjct: 130 HLLGFMDPEADFTAQDFCNHVCKAMTHITEYNGRVPIIVGGSNNFIRALVEDPHSSFKAN 189

Query: 250 YD 251
           YD
Sbjct: 190 YD 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567280|ref|XP_003551849.1| PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Glycine max]

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 95/122 (77%), Gaps = 1/122 (0%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            KKKV+F+MGAT TGKTKLSI+L   F  E INS+KIQVYKGLDI TNKV  SER G+PH
Sbjct: 8   EKKKVLFIMGATGTGKTKLSINLGTQFPSEVINSDKIQVYKGLDIITNKVPESERNGIPH 67

Query: 191 HLLGFV-DPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRAN 249
           HLLG + DP+ D+  ++FC+H L A+D IIENGHL IIVGGSNTY+  L+ED  I FR+ 
Sbjct: 68  HLLGIIDDPDYDFTVDDFCKHVLIALDLIIENGHLPIIVGGSNTYLATLLEDPNIAFRSK 127

Query: 250 YD 251
           YD
Sbjct: 128 YD 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456905|ref|XP_003598733.1| Isopentenyltransferase [Medicago truncatula] gi|355487781|gb|AES68984.1| Isopentenyltransferase [Medicago truncatula]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 96/126 (76%), Gaps = 1/126 (0%)

Query: 127 TMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQ 186
           T    +KKV+F++GAT TGKTKLSI+L   F  E INS+KIQVYKGLDI TNKV  SER 
Sbjct: 5   TSTLTEKKVLFILGATGTGKTKLSINLGTQFPSEIINSDKIQVYKGLDIVTNKVQESERC 64

Query: 187 GVPHHLLGFV-DPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIIN 245
            +PHH+LG + DPE D+  +EFC+H L A+D IIENGHL IIVGGSN+Y++ L+ED  I 
Sbjct: 65  SIPHHILGIIDDPEYDFTMDEFCKHVLEALDLIIENGHLPIIVGGSNSYLKKLLEDPTIA 124

Query: 246 FRANYD 251
           FR+ YD
Sbjct: 125 FRSKYD 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080289|ref|XP_002306084.1| cytokinin biosynthetic isopentenyltransferase [Populus trichocarpa] gi|222849048|gb|EEE86595.1| cytokinin biosynthetic isopentenyltransferase [Populus trichocarpa]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 94/121 (77%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            K+K +FVMG TATGK+KLSIDLA HF GE INS+KIQVYKGLD+ TNK++  ER+GVPH
Sbjct: 51  KKQKALFVMGTTATGKSKLSIDLATHFQGEIINSDKIQVYKGLDMLTNKISEIERRGVPH 110

Query: 191 HLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANY 250
           HLLGFV+P  ++  ++FC H  +A+  I  +G + II GGSN YIEALVED + NF+ +Y
Sbjct: 111 HLLGFVEPGEEFTTQDFCNHVHKAMKHITGDGSIPIIAGGSNRYIEALVEDPLFNFKDSY 170

Query: 251 D 251
           D
Sbjct: 171 D 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456985|ref|XP_003598773.1| Isopentenyltransferase [Medicago truncatula] gi|355487821|gb|AES69024.1| Isopentenyltransferase [Medicago truncatula]

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 95/121 (78%), Gaps = 1/121 (0%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           KKKV+F++G+T TGKTKLSI+L   F  E INS+KIQVYKGLDI TNKV  SER  +PHH
Sbjct: 11  KKKVLFILGSTGTGKTKLSINLGTQFPSEIINSDKIQVYKGLDIVTNKVQESERCSIPHH 70

Query: 192 LLGFV-DPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANY 250
           +LG + DPE D+  ++FC+H L A+D IIENGHL IIVGGSN+Y++ LV+D +I F + Y
Sbjct: 71  ILGIIDDPEYDFTVDDFCKHVLEALDLIIENGHLPIIVGGSNSYLKKLVDDPVIAFHSKY 130

Query: 251 D 251
           D
Sbjct: 131 D 131

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456895|ref|XP_003598728.1| Adenylate isopentenyltransferase [Medicago truncatula] gi|355487776|gb|AES68979.1| Adenylate isopentenyltransferase [Medicago truncatula]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 93/122 (76%), Gaps = 1/122 (0%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
           NKKKV+FVMG T TGKTKLSI+L   F  E INS+KIQVYKGLDI TNKV  SER  +PH
Sbjct: 10  NKKKVLFVMGTTGTGKTKLSINLGTQFPSEIINSDKIQVYKGLDIVTNKVQKSERCSIPH 69

Query: 191 HLLGFV-DPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRAN 249
           H+LG + DP+ D+  ++FC+H L A+D I +NGHL IIVGGSN+Y++ L+ED  I F + 
Sbjct: 70  HILGIIDDPDYDFTMDDFCKHVLEALDLITQNGHLPIIVGGSNSYLKKLLEDPTIAFHSK 129

Query: 250 YD 251
           YD
Sbjct: 130 YD 131

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166033752|gb|ABY78886.1| isopentenyl transferase IPT7 [Zea mays] gi|414877427|tpg|DAA54558.1| TPA: isopentenyl transferase IPT7 [Zea mays]

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/122 (59%), Positives = 94/122 (77%), Gaps = 1/122 (0%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
           NK KVV VMGATATGK+KL+IDLA+ F GE +NS+KIQV+ GLD+ TNKVTA+ERQGVPH
Sbjct: 14  NKAKVVLVMGATATGKSKLAIDLALRFGGEVVNSDKIQVHDGLDVVTNKVTAAERQGVPH 73

Query: 191 HLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVE-DSIINFRAN 249
           HL+  V P+ADY   +FC  A+RA++ I+E G + II GGSN Y+EAL++ +    FR  
Sbjct: 74  HLIDGVAPDADYTTADFCRDAVRAVESILERGRVPIIAGGSNRYLEALLDGEPPAGFRGR 133

Query: 250 YD 251
           Y+
Sbjct: 134 YE 135

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481561|ref|XP_003632640.1| PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Vitis vinifera]

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 98/121 (80%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            KKK+VFVMG+T +GK++LSID+A H+ GE INS+K+QVYKGLDI TNK+  S+R+GVPH
Sbjct: 18  QKKKLVFVMGSTGSGKSRLSIDIASHYLGEVINSDKMQVYKGLDIITNKMAESDRRGVPH 77

Query: 191 HLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANY 250
           HL+G V+P+ D+  E+FC  A  AI++I+E G + IIVGGSN+++EALV++  + F++ Y
Sbjct: 78  HLIGEVEPDVDFTAEDFCMAATSAIERIVEQGRVPIIVGGSNSFVEALVQNPSVEFKSRY 137

Query: 251 D 251
           +
Sbjct: 138 E 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456981|ref|XP_003598771.1| tRNA dimethylallyltransferase [Medicago truncatula] gi|355487819|gb|AES69022.1| tRNA dimethylallyltransferase [Medicago truncatula]

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 91/121 (75%), Gaps = 1/121 (0%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           KKKV+F++GAT TGKTKLSI+L   F  E INS+KIQVYKGLDI TNKV  SER  +PHH
Sbjct: 11  KKKVLFILGATGTGKTKLSINLGTQFPSEIINSDKIQVYKGLDIVTNKVQESERCSIPHH 70

Query: 192 LLGFV-DPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANY 250
           LLG + DPE D+  +EFC+H L A+  II NG L IIVGGSN+Y++ LVED  I F + Y
Sbjct: 71  LLGIIDDPEYDFTVDEFCKHVLEALALIIANGRLPIIVGGSNSYLKKLVEDPSIAFHSTY 130

Query: 251 D 251
           D
Sbjct: 131 D 131

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451947|ref|XP_003596250.1| Adenylate isopentenyltransferase [Medicago truncatula] gi|355485298|gb|AES66501.1| Adenylate isopentenyltransferase [Medicago truncatula]

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 94/126 (74%), Gaps = 1/126 (0%)

Query: 127 TMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQ 186
           T+   K KV+F++GAT TGKTKLSI+L+ ++  E INS+KIQVYKGLDI TNKV  SER 
Sbjct: 7   TLAEKKNKVLFILGATGTGKTKLSINLSTYYPAEIINSDKIQVYKGLDIVTNKVLESERC 66

Query: 187 GVPHHLLGFV-DPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIIN 245
            +PHH+LG + DPE D+   +FC+H L ++D II NGHL IIVGGSN+Y+  LVED  I 
Sbjct: 67  SIPHHILGIIDDPEYDFTMNDFCKHVLESLDLIIGNGHLPIIVGGSNSYLRKLVEDPTIA 126

Query: 246 FRANYD 251
           F + YD
Sbjct: 127 FLSKYD 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2099177	336	IPT3 "isopentenyltransferase 3	0.505	0.377	0.534	2.9e-32
TAIR|locus:2179629	330	IPT5 "isopentenyltransferase 5	0.474	0.360	0.586	6e-32
TAIR|locus:2088025	329	IPT7 "isopentenyltransferase 7	0.478	0.364	0.561	2.7e-29
UNIPROTKB|Q5GHF7	329	Q5GHF7 "Adenylate isopentenylt	0.438	0.334	0.531	1.1e-25
TAIR|locus:2094128	330	IPT8 "ATP/ADP isopentenyltrans	0.438	0.333	0.531	7.6e-25
TAIR|locus:2042103	466	IPT2 "tRNAisopentenyltransfera	0.454	0.244	0.438	8.5e-25
TAIR|locus:2121979	318	IPT4 "isopentenyltransferase 4	0.454	0.358	0.517	1.6e-24
TAIR|locus:2201292	357	IPT1 "isopentenyltransferase 1	0.430	0.302	0.486	8.7e-24
TIGR_CMR|BA_3843	314	BA_3843 "tRNA delta(2)-isopent	0.438	0.350	0.436	8e-21
TAIR|locus:2031205	342	IPT6 "isopentenyltransferase 6	0.438	0.321	0.464	8e-21

TAIR|locus:2099177 IPT3 "isopentenyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 69/129 (53%), Positives = 93/129 (72%)

Query:   125 VITMN-FNKK-KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTA 182
             ++T+N +  K KVV +MGAT TGK++LS+D+A  F  E INS+KIQV++GLDI TNK+T+
Sbjct:    31 MLTLNPYGPKDKVVVIMGATGTGKSRLSVDIATRFRAEIINSDKIQVHQGLDIVTNKITS 90

Query:   183 SERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDS 242
              E  GVPHHLLG + PEAD     +C  A  +I+ ++  G L IIVGGSN+Y+EALV+D 
Sbjct:    91 EESCGVPHHLLGVLPPEADLTAANYCHMANLSIESVLNRGKLPIIVGGSNSYVEALVDDK 150

Query:   243 IINFRANYD 251
                FR+ YD
Sbjct:   151 ENKFRSRYD 159

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

GO:0009536 "plastid" evidence=IDA

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IMP

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2179629 IPT5 "isopentenyltransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 71/121 (58%), Positives = 88/121 (72%)

Query:   132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
             K KVVFVMGAT TGK++L+IDLA  F  E +NS+KIQVYKGLDI TNKVT  E  GVPHH
Sbjct:    32 KDKVVFVMGATGTGKSRLAIDLATRFPAEIVNSDKIQVYKGLDIVTNKVTPEESLGVPHH 91

Query:   192 LLGFV-DPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANY 250
             LLG V D   D+  E+F   A+RA++ I++   + II GGSN+YIEALV D + +FR  Y
Sbjct:    92 LLGTVHDTYEDFTAEDFQREAIRAVESIVQRDRVPIIAGGSNSYIEALVNDCV-DFRLRY 150

Query:   251 D 251
             +
Sbjct:   151 N 151

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008033 "tRNA processing" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

GO:0009536 "plastid" evidence=IDA

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IMP

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2088025 IPT7 "isopentenyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 68/121 (56%), Positives = 85/121 (70%)

Query:   132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
             K+KV+FVMGAT +GK++L+IDLA  F GE INS+KIQ+YKGLD+ TNKVT  E +GVPHH
Sbjct:    33 KEKVIFVMGATGSGKSRLAIDLATRFQGEIINSDKIQLYKGLDVLTNKVTPKECRGVPHH 92

Query:   192 LLGFVDPEA-DYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRANY 250
             LLG  D EA +    ++   A +AI K+  N  L I+ GGSN+YIEALV  S      NY
Sbjct:    93 LLGVFDSEAGNLTATQYSRLASQAISKLSANNKLPIVAGGSNSYIEALVNHSSGFLLNNY 152

Query:   251 D 251
             D
Sbjct:   153 D 153

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IMP

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;TAS

GO:0009860 "pollen tube growth" evidence=IEP

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

UNIPROTKB|Q5GHF7 Q5GHF7 "Adenylate isopentenyltransferase" [Humulus lupulus (taxid:3486)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 59/111 (53%), Positives = 80/111 (72%)

Query:   132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
             K+K++ +MGAT TGK++LSIDLA HF  E INS+K+QVYKGLDI TNK++  +R GVPHH
Sbjct:    29 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHH 88

Query:   192 LLGFVDP-EADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
             LLG VDP   +    +F   A +A+ +I     L ++VGGSN++I AL+ D
Sbjct:    89 LLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVD 139

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IDA

GO:0034265 "isopentenyl adenine biosynthetic process" evidence=IC

TAIR|locus:2094128 IPT8 "ATP/ADP isopentenyltransferases" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 59/111 (53%), Positives = 79/111 (71%)

Query:   132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
             K+KVV +MGAT +GK+ LSIDLA  FSGE +NS+KIQ Y GL + TN+++  ER GVPHH
Sbjct:    42 KQKVVVIMGATGSGKSCLSIDLATRFSGEIVNSDKIQFYDGLKVTTNQMSILERCGVPHH 101

Query:   192 LLGFVDPE-ADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
             LLG + P+ ++    EF   A R+I +I   G+L II GGSN++I AL+ D
Sbjct:   102 LLGELPPDDSELTTSEFRSLASRSISEITARGNLPIIAGGSNSFIHALLVD 152

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009824 "AMP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;TAS

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2042103 IPT2 "tRNAisopentenyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 8.5e-25, P = 8.5e-25
 Identities = 50/114 (43%), Positives = 81/114 (71%)

Query:   132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
             K KVV +MG T +GK+KL++DLA HF  E IN++ +Q+Y GLD+ TNKVT  E++GVPHH
Sbjct:    19 KAKVVVIMGPTGSGKSKLAVDLASHFPVEIINADAMQIYSGLDVLTNKVTVDEQKGVPHH 78

Query:   192 LLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIIN 245
             LLG V  + ++   +F +  +  I++I+   H+ ++VGG++ YI+A+V   +++
Sbjct:    79 LLGTVSSDMEFTARDFRDFTVPLIEEIVSRNHIPVLVGGTHYYIQAVVSKFLLD 132

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008033 "tRNA processing" evidence=IEA

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;IDA

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IDA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2121979 IPT4 "isopentenyltransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 60/116 (51%), Positives = 78/116 (67%)

Query:   128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQG 187
             M  N K VV +MGAT +GK+ LS+DLA+HF  E INS+K+Q Y GL I TN+ T  +R+G
Sbjct:     1 MKCNDKMVV-IMGATGSGKSSLSVDLALHFKAEIINSDKMQFYDGLKITTNQSTIEDRRG 59

Query:   188 VPHHLLGFVDPEA-DYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDS 242
             VPHHLLG ++PEA +    EF   A  AI +I +   L I+ GGSN+YI AL+  S
Sbjct:    60 VPHHLLGELNPEAGEVTAAEFRVMAAEAISEITQRKKLPILAGGSNSYIHALLAKS 115

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;IMP

GO:0009824 "AMP dimethylallyltransferase activity" evidence=ISS;IMP

GO:0052622 "ATP dimethylallyltransferase activity" evidence=IDA

GO:0052623 "ADP dimethylallyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2201292 IPT1 "isopentenyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 53/109 (48%), Positives = 75/109 (68%)

Query:   132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
             K KVV ++GAT  GK++LS+DLA  F  E INS+KIQVY+GL+I TN++T  +R+GVPHH
Sbjct:    64 KDKVVVILGATGAGKSRLSVDLATRFPSEIINSDKIQVYEGLEITTNQITLQDRRGVPHH 123

Query:   192 LLGFVDPE-ADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALV 239
             LLG ++PE  +    EF   A   + +I     + II GGSN+++ AL+
Sbjct:   124 LLGVINPEHGELTAGEFRSAASNVVKEITSRQKVPIIAGGSNSFVHALL 172

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;TAS

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IDA;TAS

GO:0009536 "plastid" evidence=IDA

GO:0052622 "ATP dimethylallyltransferase activity" evidence=IDA

GO:0052623 "ADP dimethylallyltransferase activity" evidence=IDA

GO:0080117 "secondary growth" evidence=IGI

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TIGR_CMR|BA_3843 BA_3843 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/110 (43%), Positives = 72/110 (65%)

Query:   132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
             ++KV  ++G TA GKTKLSIDLA   +GE I+ + +Q+Y+ +DI T KVT  E  G+PH+
Sbjct:     3 REKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMDGIPHY 62

Query:   192 LLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
             ++   +PE  +   EF E   + I +I E G L IIVGG+  YI++++ D
Sbjct:    63 MVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFD 112

GO:0006400 "tRNA modification" evidence=ISS

TAIR|locus:2031205 IPT6 "isopentenyltransferase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 52/112 (46%), Positives = 72/112 (64%)

Query:   132 KKKVVFVMGATATGKTKLSIDLAIHF-SGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
             K KVV + G T TGK++LS+DLA  F   E INS+K+Q+YKG +I TN +   E+ GVPH
Sbjct:    44 KDKVVLITGTTGTGKSRLSVDLATRFFPAEIINSDKMQIYKGFEIVTNLIPLHEQGGVPH 103

Query:   191 HLLGFVDPE-ADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
             HLLG   P+  +    EF   A  +I K+I +  L I+VGGSN++  AL+ +
Sbjct:   104 HLLGQFHPQDGELTPAEFRSLATLSISKLISSKKLPIVVGGSNSFNHALLAE 155

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009824 "AMP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IV.412.1	cytokinin biosynthetic isopentenyltransferase (267 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	CYP735A6	cytochrome P450 (518 aa)						•			0.899
	CYP735A5	cytochrome P450 (516 aa)						•			0.899
	GA20ox7	gibberellin 20-oxidase (EC-1.14.11.12) (372 aa)							•		0.510
	GA20ox5	gibberellin 20-oxidase (EC-1.14.11.12) (378 aa)							•		0.510
	GA20ox2-1	gibberellin 20-oxidase (EC-1.14.11.12) (366 aa)							•		0.510
	GA20ox6	gibberellin 20-oxidase (EC-1.14.11.12) (385 aa)							•		0.510
	GA20ox4	gibberellin 20-oxidase (EC-1.14.11.12) (341 aa)							•		0.510
	eugene3.00140701	response regulator (144 aa)							•		0.510
	GA20ox3	gibberellin 20-oxidase (EC-1.14.11.12) (361 aa)							•		0.510
	GA20ox2-2	gibberellin 20-oxidase (EC-1.14.11.12) (379 aa)							•		0.510

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
PLN02165	334	PLN02165, PLN02165, adenylate isopentenyltransfera	2e-43
PRK00091	307	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp	2e-39
PLN02748	468	PLN02748, PLN02748, tRNA dimethylallyltransferase	4e-38
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	1e-37
TIGR00174	287	TIGR00174, miaA, tRNA dimethylallyltransferase	9e-33
PLN02840	421	PLN02840, PLN02840, tRNA dimethylallyltransferase	3e-26
pfam01715	253	pfam01715, IPPT, IPP transferase	3e-21
PRK14729	300	PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosp	1e-16

>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase

 Score =  149 bits (378), Expect = 2e-43
 Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 1/112 (0%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           K KVV +MGAT +GK++LS+DLA  F  E INS+K+QVY GL I TN++T  +R+GVPHH
Sbjct: 42  KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHH 101

Query: 192 LLGFVDPEA-DYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDS 242
           LLG ++P+  +    EF   A  +I +I     L I+ GGSN++I AL+ D 
Sbjct: 102 LLGELNPDDGELTASEFRSLASLSISEITSRQKLPIVAGGSNSFIHALLADR 153

Length = 334

>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

 Score =  138 bits (350), Expect = 2e-39
 Identities = 54/111 (48%), Positives = 75/111 (67%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            K KV+ ++G TA+GKT L+I+LA   +GE I+++ +QVY+G+DI T K TA ER GVPH
Sbjct: 2   MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPH 61

Query: 191 HLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           HL+  +DP   Y   +F   AL AI  I+  G L I+VGG+  YI+AL+E 
Sbjct: 62  HLIDILDPTESYSVADFQRDALAAIADILARGKLPILVGGTGLYIKALLEG 112

Length = 307

>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase

 Score =  138 bits (348), Expect = 4e-38
 Identities = 56/108 (51%), Positives = 79/108 (73%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           K KVV VMG T +GK+KL++DLA HF  E IN++ +QVY GLD+ TNKV   E++GVPHH
Sbjct: 21  KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHH 80

Query: 192 LLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALV 239
           LLG + P  ++  ++F +HA+  I++I+    L +IVGG+N YI+ALV
Sbjct: 81  LLGVISPSVEFTAKDFRDHAVPLIEEILSRNGLPVIVGGTNYYIQALV 128

Length = 468

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score =  133 bits (337), Expect = 1e-37
 Identities = 52/110 (47%), Positives = 69/110 (62%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           K K++ + G TA+GKT L+I LA    GE I+ + +QVY+GLDI T K +  E  GVPHH
Sbjct: 2   KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHH 61

Query: 192 LLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           L+   DP   Y   EF   AL AID I+  G L I+VGG+  Y++AL+E 
Sbjct: 62  LIDIRDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEG 111

Length = 308

>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase

 Score =  120 bits (302), Expect = 9e-33
 Identities = 47/107 (43%), Positives = 71/107 (66%)

Query: 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLG 194
           V+F+MG TA+GK++LSI LA   + E I+ + +Q+YKG+DI T K +  ER+G+PHHL+ 
Sbjct: 1   VIFLMGPTASGKSQLSIQLAQKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLID 60

Query: 195 FVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
            +DP   Y   +F   AL AI  I   G + ++VGG+  Y++AL+E 
Sbjct: 61  ILDPSESYSAADFQTQALNAIADITARGKIPLLVGGTGLYLKALLEG 107

Alternate names include delta(2)-isopentenylpyrophosphate transferase, IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA modification enzyme. Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. Understanding of substrate specificity has changed [Protein synthesis, tRNA and rRNA base modification]. Length = 287

>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase

 Score =  105 bits (263), Expect = 3e-26
 Identities = 41/105 (39%), Positives = 67/105 (63%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            K+KV+ + G T  GK++L+++LA   +GE I+++ +QVY+GLD+ + K + SER+ VPH
Sbjct: 19  KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPH 78

Query: 191 HLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYI 235
           HL+  + P  DY    F + A RA   I+  G + I+ GG+  Y+
Sbjct: 79  HLIDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYL 123

Length = 421

>gnl|CDD|216659 pfam01715, IPPT, IPP transferase

 Score = 88.9 bits (221), Expect = 3e-21
 Identities = 34/75 (45%), Positives = 48/75 (64%)

Query: 167 IQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHI 226
           +QVYKG+DI T K +  ER+GVPHHL+  +DP   Y   EF   AL AI +I   G + +
Sbjct: 1   MQVYKGMDIGTAKPSLEERKGVPHHLIDILDPTESYSAAEFQRDALEAIAEIRARGKIPL 60

Query: 227 IVGGSNTYIEALVED 241
           +VGG+  Y +AL++ 
Sbjct: 61  LVGGTGLYFKALLDG 75

This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37). Length = 253

>gnl|CDD|173191 PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 7/110 (6%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFS---GEAINSNKIQVYKGLDIATNKVTASERQGV 188
           + K+VF+ G TA GK+    ++  HF     E IN + IQVYK  DIA+ K +   R+ +
Sbjct: 3   ENKIVFIFGPTAVGKS----NILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHI 58

Query: 189 PHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEAL 238
            HHL+ F++P  +Y    F + AL+ I ++ +   + I VGGS  Y + L
Sbjct: 59  KHHLVDFLEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKHL 108

Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
PLN02748	468	tRNA dimethylallyltransferase	100.0
PLN02840	421	tRNA dimethylallyltransferase	100.0
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	100.0
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.98
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	99.97
PLN02165	334	adenylate isopentenyltransferase	99.96
PF01715	253	IPPT: IPP transferase; InterPro: IPR002627 tRNA is	99.88
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	99.82
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.51
PRK14737	186	gmk guanylate kinase; Provisional	99.47
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.38
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.37
PRK00300	205	gmk guanylate kinase; Provisional	99.35
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.34
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.24
PRK04220	301	2-phosphoglycerate kinase; Provisional	99.18
PRK14738	206	gmk guanylate kinase; Provisional	99.12
PLN02772	398	guanylate kinase	99.12
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.74
PRK00131	175	aroK shikimate kinase; Reviewed	98.71
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.68
PRK05057	172	aroK shikimate kinase I; Reviewed	98.6
PRK08356	195	hypothetical protein; Provisional	98.6
PRK06217	183	hypothetical protein; Validated	98.55
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	98.54
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.5
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.47
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.47
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.43
PRK08118	167	topology modulation protein; Reviewed	98.42
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.42
PRK07261	171	topology modulation protein; Provisional	98.41
PRK13946	184	shikimate kinase; Provisional	98.37
PRK06547	172	hypothetical protein; Provisional	98.32
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.31
PRK13947	171	shikimate kinase; Provisional	98.26
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.26
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.23
PTZ00301	210	uridine kinase; Provisional	98.23
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.22
PRK14527	191	adenylate kinase; Provisional	98.2
PF00004	132	AAA: ATPase family associated with various cellula	98.2
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.19
PRK13949	169	shikimate kinase; Provisional	98.18
PRK08233	182	hypothetical protein; Provisional	98.18
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.17
PRK05480	209	uridine/cytidine kinase; Provisional	98.17
PRK06762	166	hypothetical protein; Provisional	98.17
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.17
PRK03839	180	putative kinase; Provisional	98.15
PRK13948	182	shikimate kinase; Provisional	98.15
PRK14530	215	adenylate kinase; Provisional	98.14
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.11
PRK06696	223	uridine kinase; Validated	98.1
PRK14531	183	adenylate kinase; Provisional	98.09
PRK03731	171	aroL shikimate kinase II; Reviewed	98.08
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.08
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.07
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.07
PRK14532	188	adenylate kinase; Provisional	98.06
PLN02200	234	adenylate kinase family protein	98.06
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.05
PHA02530	300	pseT polynucleotide kinase; Provisional	98.05
PRK05541	176	adenylylsulfate kinase; Provisional	98.04
PRK12338	319	hypothetical protein; Provisional	98.04
PRK00625	173	shikimate kinase; Provisional	98.03
PRK00023	225	cmk cytidylate kinase; Provisional	98.02
PTZ00088	229	adenylate kinase 1; Provisional	97.99
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	97.97
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.95
PRK14528	186	adenylate kinase; Provisional	97.95
PRK01184	184	hypothetical protein; Provisional	97.94
PRK00279	215	adk adenylate kinase; Reviewed	97.94
PRK02496	184	adk adenylate kinase; Provisional	97.94
smart00382	148	AAA ATPases associated with a variety of cellular	97.94
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.94
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.93
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.93
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.93
PRK04182	180	cytidylate kinase; Provisional	97.92
PRK15453	290	phosphoribulokinase; Provisional	97.92
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.91
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.9
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.88
PF13173	128	AAA_14: AAA domain	97.88
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.86
PRK07667	193	uridine kinase; Provisional	97.86
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.85
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.85
PRK05439	311	pantothenate kinase; Provisional	97.84
PRK14730	195	coaE dephospho-CoA kinase; Provisional	97.84
PLN02674	244	adenylate kinase	97.83
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.82
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.8
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	97.79
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.79
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.78
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.76
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.75
PRK04040	188	adenylate kinase; Provisional	97.75
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.75
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.73
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.73
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.72
PRK06893	229	DNA replication initiation factor; Validated	97.68
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.65
PLN02348	395	phosphoribulokinase	97.64
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.64
PRK07429	327	phosphoribulokinase; Provisional	97.61
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.61
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.59
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.59
PRK08084	235	DNA replication initiation factor; Provisional	97.59
PRK00889	175	adenylylsulfate kinase; Provisional	97.58
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.58
PRK11545	163	gntK gluconate kinase 1; Provisional	97.58
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.57
PLN02199	303	shikimate kinase	97.57
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.56
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.55
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.54
PRK03846	198	adenylylsulfate kinase; Provisional	97.54
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.53
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	97.53
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.53
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.51
PRK09825	176	idnK D-gluconate kinase; Provisional	97.51
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.49
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.49
PRK14526	211	adenylate kinase; Provisional	97.46
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	97.46
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.46
PRK13975	196	thymidylate kinase; Provisional	97.46
PRK14734	200	coaE dephospho-CoA kinase; Provisional	97.43
PLN02459	261	probable adenylate kinase	97.42
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.4
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.4
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.37
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.37
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.36
PTZ00451	244	dephospho-CoA kinase; Provisional	97.36
PRK00698	205	tmk thymidylate kinase; Validated	97.36
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.35
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.34
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.33
PRK06761	282	hypothetical protein; Provisional	97.33
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.32
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	97.31
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.3
PRK09087	226	hypothetical protein; Validated	97.3
PLN02318	656	phosphoribulokinase/uridine kinase	97.3
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.29
PLN03046	460	D-glycerate 3-kinase; Provisional	97.28
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.28
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.26
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.26
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.26
PRK06620	214	hypothetical protein; Validated	97.26
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.23
PRK13808	333	adenylate kinase; Provisional	97.23
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.22
PRK14529	223	adenylate kinase; Provisional	97.21
COG0645	170	Predicted kinase [General function prediction only	97.2
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.18
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.18
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	97.17
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.16
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.16
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.16
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.16
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.16
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.15
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.15
PLN02796	347	D-glycerate 3-kinase	97.15
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.15
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	97.14
PLN02422	232	dephospho-CoA kinase	97.1
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	97.1
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.09
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.09
PRK13973	213	thymidylate kinase; Provisional	97.07
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.07
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.06
PF05729	166	NACHT: NACHT domain	97.06
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.05
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.04
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.03
PRK10867	433	signal recognition particle protein; Provisional	97.03
PRK04195	482	replication factor C large subunit; Provisional	97.01
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	97.0
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.0
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.99
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.99
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.99
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.99
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	96.97
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.97
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.95
PRK05642	234	DNA replication initiation factor; Validated	96.94
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.94
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.93
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.93
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.93
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.93
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.92
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.92
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.92
PRK10416	318	signal recognition particle-docking protein FtsY;	96.91
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.9
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.9
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.9
TIGR00959	428	ffh signal recognition particle protein. This mode	96.89
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	96.88
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	96.88
CHL00195	489	ycf46 Ycf46; Provisional	96.88
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.87
PTZ00202	550	tuzin; Provisional	96.87
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.87
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	96.87
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.85
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.84
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.84
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	96.84
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.83
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	96.82
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.81
PHA00729	226	NTP-binding motif containing protein	96.81
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	96.8
PRK04296	190	thymidine kinase; Provisional	96.79
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.78
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.78
PRK06851	367	hypothetical protein; Provisional	96.77
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.77
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.76
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.76
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.75
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.74
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.73
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.73
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.73
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.72
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.72
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.71
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.7
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.69
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.69
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.68
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.67
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.67
PF13245	76	AAA_19: Part of AAA domain	96.67
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.67
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.67
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.66
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.66
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.66
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.65
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.65
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.65
PHA02624	647	large T antigen; Provisional	96.64
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	96.64
PHA02544	316	44 clamp loader, small subunit; Provisional	96.64
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.64
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.64
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.64
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.63
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.63
PRK13851	344	type IV secretion system protein VirB11; Provision	96.63
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	96.63
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.62
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.62
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.62
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.62
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.61
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.61
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.61
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.61
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	96.6
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.6
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.6
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.6
cd01128	249	rho_factor Transcription termination factor rho is	96.6
PRK13342	413	recombination factor protein RarA; Reviewed	96.59
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.59
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.59
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.59
PRK07952	244	DNA replication protein DnaC; Validated	96.58
PRK12402	337	replication factor C small subunit 2; Reviewed	96.57
PRK08116	268	hypothetical protein; Validated	96.57
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.57
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.56
COG3709	192	Uncharacterized component of phosphonate metabolis	96.56
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.56
PRK06921	266	hypothetical protein; Provisional	96.55
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.55
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.54
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.54
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.54
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.53
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.53
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.53
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.53
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.53
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.52
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.52
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.52
CHL00181	287	cbbX CbbX; Provisional	96.51
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.51
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.51
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.51
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.5
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.5
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.5
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.5
PRK14974	336	cell division protein FtsY; Provisional	96.49
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.49
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.48
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.48
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.48
cd03246	173	ABCC_Protease_Secretion This family represents the	96.48
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.48
PRK10908	222	cell division protein FtsE; Provisional	96.48
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	96.47
COG4639	168	Predicted kinase [General function prediction only	96.47
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	96.46
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.46
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.46
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.46
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.46
PHA02244	383	ATPase-like protein	96.46
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	96.45
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.45
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.45
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.44
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.44
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.44
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.44
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.44
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.43
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.43
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.42
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.42
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.42
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.42
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.42
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.41
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.41
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.41
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	96.41
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.39
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.39
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.38
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.38
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	96.38
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.37
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.37
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	96.37
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.37
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.37
PRK06835	329	DNA replication protein DnaC; Validated	96.37
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.36
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.36
PRK00149	450	dnaA chromosomal replication initiation protein; R	96.36
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.36
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.36
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.36
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.36
PRK13768	253	GTPase; Provisional	96.35
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.35
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.35
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.35
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.35
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.35
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.34
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.34
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.33
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.33
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.33
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.33
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.33
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.32
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.32
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.32
PLN02924	220	thymidylate kinase	96.31
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.31
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.31
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.31
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.31
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	96.3
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.3
PRK10436	462	hypothetical protein; Provisional	96.3
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.3
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.3
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.3
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.29
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.29
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	96.29
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.28
PRK08727	233	hypothetical protein; Validated	96.28
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.28
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	96.28
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.28
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.28
PRK10865	857	protein disaggregation chaperone; Provisional	96.28
cd03114	148	ArgK-like The function of this protein family is u	96.28
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.27
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.27
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.27
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.26
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	96.26
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.26
PLN02842	505	nucleotide kinase	96.26
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.26
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.26
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.26
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	96.26
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.25
CHL00176	638	ftsH cell division protein; Validated	96.25
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.25
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.24
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.24
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.23
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	96.23
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	96.23
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	96.23
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.23
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.22
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	96.22
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.22
PRK06526	254	transposase; Provisional	96.21
TIGR02533	486	type_II_gspE general secretory pathway protein E.	96.21
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.21
cd03116	159	MobB Molybdenum is an essential trace element in t	96.21
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.2
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	96.2
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	96.2
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.19
PRK09183	259	transposase/IS protein; Provisional	96.19
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	96.19
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.19
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	96.18
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.18
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.18
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	96.18
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.18
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	96.18
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	96.18
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.18
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.18
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.18
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.17
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.16
COG0714	329	MoxR-like ATPases [General function prediction onl	96.16
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	96.16
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.16
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.15
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	96.15
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.15
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	96.15
COG3911	183	Predicted ATPase [General function prediction only	96.15
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.14
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	96.14
COG1100	219	GTPase SAR1 and related small G proteins [General	96.14
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	96.14
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	96.13
PLN03025	319	replication factor C subunit; Provisional	96.12
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	96.12
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.12
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.11
PF13479	213	AAA_24: AAA domain	96.11
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.11
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.11
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.11
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	96.11
PRK12422	445	chromosomal replication initiation protein; Provis	96.11
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.11
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	96.11
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.11
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	96.11
PRK13764	602	ATPase; Provisional	96.1
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.1
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	96.1
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	96.1
PRK09984	262	phosphonate/organophosphate ester transporter subu	96.1
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	96.1
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	96.1
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	96.1
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.1
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	96.09
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	96.09
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	96.09
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.09
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.09
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	96.09
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	96.08
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	96.08
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	96.08
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	96.08
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	96.08

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=100.00  E-value=1.9e-36  Score=278.57  Aligned_cols=112  Identities=34%  Similarity=0.568  Sum_probs=108.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      .++++|+|+||||||||.||.+||++ +++|||+||+||||+++|+|+||+++|+.++||||+|.++|.+.||+++|.+.
T Consensus         2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~   80 (300)
T PRK14729          2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE   80 (300)
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence            34579999999999999999999999 67999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245          211 ALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI  243 (251)
Q Consensus       211 A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~  243 (251)
                      |.+.|++++++|+.||||||||||++||++|+.
T Consensus        81 a~~~i~~i~~~gk~PilvGGTglYi~all~gl~  113 (300)
T PRK14729         81 ALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLP  113 (300)
T ss_pred             HHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCC
Confidence            999999999999999999999999999999974

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-35  Score=275.17  Aligned_cols=112  Identities=46%  Similarity=0.765  Sum_probs=110.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      ++++++|+||||||||.||..||+++|++|||+||+|||++++|||+||+.+|+.++|||++|..+|.+.||+++|.++|
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a   81 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA   81 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245          212 LRAIDKIIENGHLHIIVGGSNTYIEALVEDSI  243 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~  243 (251)
                      .+.|+++..+||.||||||||+|++||+.|++
T Consensus        82 ~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~  113 (308)
T COG0324          82 LAAIDDILARGKLPILVGGTGLYLKALLEGLS  113 (308)
T ss_pred             HHHHHHHHhCCCCcEEEccHHHHHHHHHcCCC
Confidence            99999999999999999999999999999976

>PLN02748 tRNA dimethylallyltransferase

Probab=100.00  E-value=1.4e-34  Score=279.73  Aligned_cols=115  Identities=49%  Similarity=0.834  Sum_probs=111.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC  208 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~  208 (251)
                      ..+++++|+|+||||||||+||..||++++++|||+|++|||++++|+|+||+++|+.++||||+|.++|.+.|++++|.
T Consensus        18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~   97 (468)
T PLN02748         18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR   97 (468)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245          209 EHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI  243 (251)
Q Consensus       209 e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~  243 (251)
                      +.|.+.|++++++|+.||||||||||++||++|+.
T Consensus        98 ~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~  132 (468)
T PLN02748         98 DHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFL  132 (468)
T ss_pred             HHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcc
Confidence            99999999999999999999999999999999874

>PLN02840 tRNA dimethylallyltransferase

Probab=100.00  E-value=1.5e-33  Score=269.89  Aligned_cols=115  Identities=36%  Similarity=0.693  Sum_probs=111.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC  208 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~  208 (251)
                      ...++++|+|+|||||||||||..||++++.++|++|++|+|++++|+|+||+++|+.++||||+|.++|.++|++++|.
T Consensus        17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~   96 (421)
T PLN02840         17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF   96 (421)
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence            34556799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245          209 EHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI  243 (251)
Q Consensus       209 e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~  243 (251)
                      ++|.+.|++++++|++||||||||||++||++|++
T Consensus        97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~  131 (421)
T PLN02840         97 DDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKP  131 (421)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCC
Confidence            99999999999999999999999999999999975

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=100.00  E-value=1.9e-33  Score=257.27  Aligned_cols=109  Identities=42%  Similarity=0.791  Sum_probs=107.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHH
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRA  214 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~  214 (251)
                      +|+|+||||||||+||.+|+++++.++||+|++|||++++|+|+||+++|+.++||||+|..++.+.|++++|++.|.+.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~   80 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA   80 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245          215 IDKIIENGHLHIIVGGSNTYIEALVEDSI  243 (251)
Q Consensus       215 I~eI~~~Gk~PILVGGTglYlkaLl~g~~  243 (251)
                      |++++++|+.||||||||||++||++|+.
T Consensus        81 i~~~~~~g~~pi~vGGTg~Yi~all~g~~  109 (287)
T TIGR00174        81 IADITARGKIPLLVGGTGLYLKALLEGLS  109 (287)
T ss_pred             HHHHHhCCCCEEEEcCcHHHHHHHHcCCC
Confidence            99999999999999999999999999975

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=99.98  E-value=1.2e-32  Score=253.28  Aligned_cols=113  Identities=48%  Similarity=0.805  Sum_probs=109.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      .++++|+|+||||||||+||..||++++.++||+|++|+|++++|+|+||+++|+++++|||+|.++|.+.|++++|.++
T Consensus         2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~   81 (307)
T PRK00091          2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD   81 (307)
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245          211 ALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI  243 (251)
Q Consensus       211 A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~  243 (251)
                      |.+.+++++++|+.|||||||++|+++|+.|+.
T Consensus        82 a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~  114 (307)
T PRK00091         82 ALAAIADILARGKLPILVGGTGLYIKALLEGLS  114 (307)
T ss_pred             HHHHHHHHHhCCCCEEEECcHHHHHHHhccCCC
Confidence            999999999999999999999999999999863

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.5e-30  Score=243.17  Aligned_cols=110  Identities=59%  Similarity=0.977  Sum_probs=108.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      +.|+|+|+|+||||||.||..||.+|+++|||+|++|+|++++|+|+|++.+|+.|+||||++.+++..++++++|.+.|
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a   85 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA   85 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245          212 LRAIDKIIENGHLHIIVGGSNTYIEALVED  241 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PILVGGTglYlkaLl~g  241 (251)
                      ..+|++|+++|+.||++|||++|++||+.+
T Consensus        86 ~~aie~I~~rgk~PIv~GGs~~yi~al~~~  115 (348)
T KOG1384|consen   86 SRAIEEIHSRGKLPIVVGGSNSYLQALLSK  115 (348)
T ss_pred             HHHHHHHHhCCCCCEEeCCchhhHHHHhhc
Confidence            999999999999999999999999999998

>PLN02165 adenylate isopentenyltransferase

Probab=99.96  E-value=1.3e-29  Score=236.94  Aligned_cols=112  Identities=49%  Similarity=0.812  Sum_probs=108.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC-ccCHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA-DYPEEEFCE  209 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e-~fsag~F~e  209 (251)
                      .++++++|+||||||||+||..||+.++.++|++|++|+|++++|+|++|+.+|+.+++||++|..++.+ .|++++|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~  120 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRS  120 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHH
Confidence            4456999999999999999999999999999999999999999999999999999999999999999987 899999999


Q ss_pred             HHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245          210 HALRAIDKIIENGHLHIIVGGSNTYIEALVEDS  242 (251)
Q Consensus       210 ~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~  242 (251)
                      .+.+.+++++++|+.||+|||||+|++||+.|+
T Consensus       121 ~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~  153 (334)
T PLN02165        121 LASLSISEITSRQKLPIVAGGSNSFIHALLADR  153 (334)
T ss_pred             HHHHHHHHHHHCCCcEEEECChHHHHHHHHcCC
Confidence            999999999999999999999999999999986

>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2

Probab=99.88  E-value=2.1e-23  Score=187.05  Aligned_cols=77  Identities=44%  Similarity=0.836  Sum_probs=63.2

Q ss_pred             cceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245          167 IQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI  243 (251)
Q Consensus       167 ~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~  243 (251)
                      |||||+++|+|+||+++|+.++||||+|..+|.+.||+++|.++|.+.|++++++|+.||||||||||++||++|+.
T Consensus         1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~   77 (253)
T PF01715_consen    1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLA   77 (253)
T ss_dssp             STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS-
T ss_pred             CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999976

5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=99.82  E-value=3.2e-20  Score=166.45  Aligned_cols=108  Identities=28%  Similarity=0.364  Sum_probs=84.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC-ccCHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA-DYPEEEFCEHAL  212 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e-~fsag~F~e~A~  212 (251)
                      ++++|.||||+|||.+|..||+++|++||++|++|+|++++++|++|.++|+++++++++|.....+ .+++.++.+...
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li   81 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLI   81 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999887655 799999999999


Q ss_pred             HHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245          213 RAIDKIIENGHLHIIVGGSNTYIEALVEDS  242 (251)
Q Consensus       213 k~I~eI~~~Gk~PILVGGTglYlkaLl~g~  242 (251)
                      ..+.++.+ ++.+||.|||...++++....
T Consensus        82 ~~v~~~~~-~~~~IlEGGSISLl~~m~~~~  110 (233)
T PF01745_consen   82 SEVNSYSA-HGGLILEGGSISLLNCMAQDP  110 (233)
T ss_dssp             HHHHTTTT-SSEEEEEE--HHHHHHHHH-T
T ss_pred             HHHHhccc-cCceEEeCchHHHHHHHHhcc
Confidence            99999877 889999999999999998764

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.51  E-value=7.3e-15  Score=129.12  Aligned_cols=87  Identities=21%  Similarity=0.213  Sum_probs=75.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      ++++++|+||||+|||||.++|-++.+.          .-.++.+|++|+++|++|++|||++..+|.+.++.++|+|||
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l----------~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a   72 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKL----------RFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWA   72 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCe----------EEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEE
Confidence            6789999999999999999999988732          222456999999999999999999999999987777777666


Q ss_pred             ----------HHHHHHHHHcCCcEEEE
Q 045245          212 ----------LRAIDKIIENGHLHIIV  228 (251)
Q Consensus       212 ----------~k~I~eI~~~Gk~PILV  228 (251)
                                +..++++++.|+.+||.
T Consensus        73 ~~~gnyYGT~~~~ve~~~~~G~~vild   99 (191)
T COG0194          73 EYHGNYYGTSREPVEQALAEGKDVILD   99 (191)
T ss_pred             EEcCCcccCcHHHHHHHHhcCCeEEEE
Confidence                      78899999999999995

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.47  E-value=1.3e-14  Score=124.44  Aligned_cols=89  Identities=15%  Similarity=0.201  Sum_probs=75.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      .++++|+|+||||||||||++.|.++++..         +...+++|++|+++|.+|++|||++..+|...+..++|+++
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~---------~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~   72 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDF---------LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEW   72 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCcc---------ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEE
Confidence            357899999999999999999999876421         23358899999999999999999999998887666666665


Q ss_pred             ----------HHHHHHHHHHcCCcEEEE
Q 045245          211 ----------ALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       211 ----------A~k~I~eI~~~Gk~PILV  228 (251)
                                .++.|++.++.|+.+|+.
T Consensus        73 ~~~~g~~YGt~~~~i~~~~~~g~~~i~d  100 (186)
T PRK14737         73 AEVHDNYYGTPKAFIEDAFKEGRSAIMD  100 (186)
T ss_pred             EEECCeeecCcHHHHHHHHHcCCeEEEE
Confidence                      468899999999999985

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.38  E-value=2.4e-13  Score=110.77  Aligned_cols=98  Identities=19%  Similarity=0.228  Sum_probs=77.4

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHH-----
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCE-----  209 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e-----  209 (251)
                      +|+|+||||||||||++.|++.++....        ...+.+|++|+++|.++++|++++..++.+.+..++|.+     
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~--------~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~   72 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFG--------FSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFH   72 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccce--------ecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEc
Confidence            4789999999999999999998764311        124568999999999999999999988877666655555     


Q ss_pred             -----HHHHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245          210 -----HALRAIDKIIENGHLHIIVGGSNTYIEALVED  241 (251)
Q Consensus       210 -----~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g  241 (251)
                           ..++.+++++++|+.||+.. +.-.++.|...
T Consensus        73 ~~~yg~~~~~i~~~~~~g~~~il~~-~~~~~~~l~~~  108 (137)
T cd00071          73 GNYYGTSKAAVEEALAEGKIVILEI-DVQGARQVKKS  108 (137)
T ss_pred             CEEecCcHHHHHHHHhCCCeEEEEe-cHHHHHHHHHc
Confidence                 56888999999999999865 55555555553

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.37  E-value=7.9e-14  Score=116.80  Aligned_cols=91  Identities=25%  Similarity=0.340  Sum_probs=70.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      ++++|+|+||+|||||||+.+|.++++...-        .-.+++|++|+++|.+|++|||++..+|......++|+++.
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~--------~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~   72 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFG--------RVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYG   72 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEE--------EEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccc--------cceeecccCCcccccCCcceEEEeechhhhhhccccEEEEe
Confidence            4689999999999999999999999874321        22456999999999999999999988887755555555543


Q ss_pred             ----------HHHHHHHHHcCCcEEEEcc
Q 045245          212 ----------LRAIDKIIENGHLHIIVGG  230 (251)
Q Consensus       212 ----------~k~I~eI~~~Gk~PILVGG  230 (251)
                                .+.|+++.++|+.+|+...
T Consensus        73 ~~~g~~YGt~~~~i~~~~~~gk~~il~~~  101 (183)
T PF00625_consen   73 EYDGNYYGTSKSAIDKVLEEGKHCILDVD  101 (183)
T ss_dssp             EETTEEEEEEHHHHHHHHHTTTEEEEEET
T ss_pred             eecchhhhhccchhhHhhhcCCcEEEEcc
Confidence                      6889999999999999654

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.35  E-value=2.9e-13  Score=113.81  Aligned_cols=103  Identities=14%  Similarity=0.204  Sum_probs=80.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH--
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF--  207 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F--  207 (251)
                      +.++.+|+|+||||||||||++.|++.++ .        +|...+++|++|+.+|.++.+|++++..++...+..++|  
T Consensus         2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~-~--------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~   72 (205)
T PRK00300          2 MRRGLLIVLSGPSGAGKSTLVKALLERDP-N--------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLE   72 (205)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCc-c--------ceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEE
Confidence            35678999999999999999999999875 2        366778999999999999999999987776554333333  


Q ss_pred             --------HHHHHHHHHHHHHcCCcEEE---EcccHHHHHHHHcC
Q 045245          208 --------CEHALRAIDKIIENGHLHII---VGGSNTYIEALVED  241 (251)
Q Consensus       208 --------~e~A~k~I~eI~~~Gk~PIL---VGGTglYlkaLl~g  241 (251)
                              +......+++.+..|+.+|+   .+|...+.+.+.++
T Consensus        73 ~~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~  117 (205)
T PRK00300         73 WAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDA  117 (205)
T ss_pred             EEEECCccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCc
Confidence                    33346778999999999988   57777777766543

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.34  E-value=2.2e-13  Score=112.09  Aligned_cols=97  Identities=19%  Similarity=0.250  Sum_probs=77.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH-
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA-  211 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A-  211 (251)
                      +++|+|.||+||||||+++.|++.++...++         .+++|++|..+|..+.+|++++...+...+..++|.+.. 
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~---------~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFS---------ISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAE   71 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCcccccc---------ccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEE
Confidence            3689999999999999999999987654332         367899999999999999999977766655555554432 


Q ss_pred             ---------HHHHHHHHHcCCcEEE---EcccHHHHHHH
Q 045245          212 ---------LRAIDKIIENGHLHII---VGGSNTYIEAL  238 (251)
Q Consensus       212 ---------~k~I~eI~~~Gk~PIL---VGGTglYlkaL  238 (251)
                               ++.+++++++|+.+|+   .+|...+.+++
T Consensus        72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~  110 (180)
T TIGR03263        72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKF  110 (180)
T ss_pred             ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhC
Confidence                     6778999999999999   57777777775

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>smart00072 GuKc Guanylate kinase homologues

Probab=99.24  E-value=3.1e-12  Score=107.68  Aligned_cols=90  Identities=17%  Similarity=0.246  Sum_probs=72.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCH--------
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPE--------  204 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsa--------  204 (251)
                      +++|+|+||+||||+|++..|.+.++..+        ..-.+.+|+.|+++|.+|++|+|++..++...+..        
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~--------~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~   73 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAF--------ERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGE   73 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcce--------EeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEE
Confidence            46899999999999999999999875211        23346799999999999999999998887665443        


Q ss_pred             --HHHHHHHHHHHHHHHHcCCcEEEEcc
Q 045245          205 --EEFCEHALRAIDKIIENGHLHIIVGG  230 (251)
Q Consensus       205 --g~F~e~A~k~I~eI~~~Gk~PILVGG  230 (251)
                        ++|+...++.|+++.+.|+.+|+.+.
T Consensus        74 ~~g~~YGt~~~~i~~~~~~~~~~ild~~  101 (184)
T smart00072       74 YSGNYYGTSKETIRQVAEQGKHCLLDID  101 (184)
T ss_pred             EcCcCcccCHHHHHHHHHcCCeEEEEEC
Confidence              44555557889999999999999864

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=99.18  E-value=1.8e-11  Score=113.89  Aligned_cols=169  Identities=14%  Similarity=0.198  Sum_probs=107.7

Q ss_pred             hhhcCcceeeeeccchhhhHHhhhhhhhhhh---hHHHhhhhceeeeecCCcc---eeecccccccccccccccccCccc
Q 045245           41 FCKAGRQQLVFDKSMLSTAVIWYGCLTILAR---HEYYRDMERWLIVVHPSDC---LIFAGFSRAAGFWIPQVDHRGKSN  114 (251)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  114 (251)
                      .-+.|.-.+.|.|..|+..+.--||-.=.|-   .+..+++++=..-+-+.+.   +.+.-.... ++.+    ...++.
T Consensus         7 ~v~~~~~~~pfSrgiL~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~-~~~~----~~~~y~   81 (301)
T PRK04220          7 IVKGKKYEMPFSKGILARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEK-DYEE----VAEKYL   81 (301)
T ss_pred             EEcCCCccCCCcHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHh-CcHh----HHHHHH
Confidence            3456777888888888888777777554442   1333333332222222211   111111111 1010    011122


Q ss_pred             hhhhccchhhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCc-eEecCCcc------------------eeccccc
Q 045245          115 FISKNLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGE-AINSNKIQ------------------VYKGLDI  175 (251)
Q Consensus       115 ~~~~~~~~~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~-VIS~Ds~Q------------------vYk~lsI  175 (251)
                      +...+        +...+|.+|+|.|+|||||||+|..||++++.. +|+.|+++                  .|..|.+
T Consensus        82 ~~~~i--------~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~  153 (301)
T PRK04220         82 LWRRI--------RKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKS  153 (301)
T ss_pred             HHHHH--------hcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhc
Confidence            22211        223467899999999999999999999999986 89999999                  8999999


Q ss_pred             ccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHHHHHHHHcCCcEEEEcccHH
Q 045245          176 ATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNT  233 (251)
Q Consensus       176 gTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~I~eI~~~Gk~PILVGGTgl  233 (251)
                      .|++|++++     |++.++.+..+.++++     +.+.|+..+.+|...||.| .++
T Consensus       154 l~~~~~~~~-----~~l~g~~~~~~~v~~g-----i~~~I~~~~~~g~s~IiEG-vhl  200 (301)
T PRK04220        154 LRRPPPPEP-----PVIYGFERHVEPVSVG-----VEAVIERALKEGISVIIEG-VHI  200 (301)
T ss_pred             ccCCCCCch-----hhhhhHHHHHHHHHHH-----HHHHHHHHHHhCCcEEEec-CCC
Confidence            999998765     7888888777766555     6677888888887766554 544

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.12  E-value=1.9e-11  Score=105.34  Aligned_cols=99  Identities=14%  Similarity=0.117  Sum_probs=73.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      +++++|+|+||+|||||||+..|.+... .        +..-.+.+|+.|+++|.+|..|||++..++...+..+.|.++
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~--------~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~   81 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRERKL-P--------FHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEW   81 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhcCC-c--------ccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEE
Confidence            5678999999999999999999986531 1        123346789999999999999999998887665443444443


Q ss_pred             ----------HHHHHHHHHHcCCcEEEEcccHHHHHHHH
Q 045245          211 ----------ALRAIDKIIENGHLHIIVGGSNTYIEALV  239 (251)
Q Consensus       211 ----------A~k~I~eI~~~Gk~PILVGGTglYlkaLl  239 (251)
                                .++.|++.+++|+.+|+.. +.-+++.|-
T Consensus        82 ~~~~g~~YGt~~~~i~~~~~~g~~vi~~~-~~~g~~~l~  119 (206)
T PRK14738         82 AEVYGNYYGVPKAPVRQALASGRDVIVKV-DVQGAASIK  119 (206)
T ss_pred             EEEcCceecCCHHHHHHHHHcCCcEEEEc-CHHHHHHHH
Confidence                      3578999999999988853 333444443

>PLN02772 guanylate kinase

Probab=99.12  E-value=3.7e-11  Score=115.53  Aligned_cols=99  Identities=22%  Similarity=0.302  Sum_probs=78.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      ...++++|+||+||||+||.++|.+.++...        ....+++||+|++.|.+|+.|||++..+|...+..++|.++
T Consensus       133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~--------~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~  204 (398)
T PLN02772        133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEF  204 (398)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhhhccccc--------cccccccCCCCcccccCCceEeeCCHHHHHHHHHhCcccee
Confidence            3668999999999999999999998774321        12346799999999999999999998888777776666666


Q ss_pred             H----------HHHHHHHHHcCCcEEE---EcccHHHHHH
Q 045245          211 A----------LRAIDKIIENGHLHII---VGGSNTYIEA  237 (251)
Q Consensus       211 A----------~k~I~eI~~~Gk~PIL---VGGTglYlka  237 (251)
                      +          ++.++.+.++|+.+||   +-|.....+.
T Consensus       205 ~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~  244 (398)
T PLN02772        205 ASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRAS  244 (398)
T ss_pred             eeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHh
Confidence            5          7899999999999997   3444443443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.74  E-value=1.2e-08  Score=85.87  Aligned_cols=96  Identities=19%  Similarity=0.241  Sum_probs=62.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHH---
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCE---  209 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e---  209 (251)
                      +.+++|+||+|||||||++.|+..++..++-.|+.        .|+.++..   +..++++...++...+..+.|.+   
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRY--------ITRPASAG---SENHIALSEQEFFTRAGQNLFALSWH   70 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEE--------CCCccchh---HHhheeEcHHHHHHHHHCCchhhHHH
Confidence            35899999999999999999999887655544432        34433322   34567777666555444444432   


Q ss_pred             -------HHHHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245          210 -------HALRAIDKIIENGHLHIIVGGSNTYIEALVED  241 (251)
Q Consensus       210 -------~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g  241 (251)
                             ..+ .+++.++.|+. ||++|+.-+.+.+...
T Consensus        71 ~~g~~yg~~~-~~~~~l~~g~~-VI~~G~~~~~~~~~~~  107 (186)
T PRK10078         71 ANGLYYGVGI-EIDLWLHAGFD-VLVNGSRAHLPQARAR  107 (186)
T ss_pred             HhCCccCCcH-HHHHHHhCCCE-EEEeChHHHHHHHHHH
Confidence                   234 47888888876 4557777776665544

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.71  E-value=2.6e-08  Score=80.28  Aligned_cols=85  Identities=18%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHH
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCE  209 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e  209 (251)
                      +++++.|+|+|++||||||+|+.||++++...+..|.+-  +.   .++.+. .             +..+......|.+
T Consensus         1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~--~~---~~g~~~-~-------------~~~~~~g~~~~~~   61 (175)
T PRK00131          1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLI--EA---RAGKSI-P-------------EIFEEEGEAAFRE   61 (175)
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHH--HH---HcCCCH-H-------------HHHHHHCHHHHHH
Confidence            356789999999999999999999999999999888641  10   111110 0             0011123345666


Q ss_pred             HHHHHHHHHHHcCCcEEEEcccHH
Q 045245          210 HALRAIDKIIENGHLHIIVGGSNT  233 (251)
Q Consensus       210 ~A~k~I~eI~~~Gk~PILVGGTgl  233 (251)
                      ...+.+.++......+|..||+..
T Consensus        62 ~~~~~~~~l~~~~~~vi~~g~~~~   85 (175)
T PRK00131         62 LEEEVLAELLARHNLVISTGGGAV   85 (175)
T ss_pred             HHHHHHHHHHhcCCCEEEeCCCEe
Confidence            666777777765555566676544

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.68  E-value=1.7e-08  Score=77.73  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=31.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|+|+|||||||||+|+.|+++++..+++.|.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~   33 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDL   33 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecce
Confidence            589999999999999999999999999999984

...

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.60  E-value=1.1e-07  Score=80.07  Aligned_cols=83  Identities=22%  Similarity=0.342  Sum_probs=57.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      +++.|+|+||+||||||+++.|++.++..++..|..              .+++.+.     +...+.+.+....|....
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~--------------i~~~~g~-----~i~~~~~~~g~~~fr~~e   63 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE--------------IEKRTGA-----DIGWVFDVEGEEGFRDRE   63 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCch--------------HHHHhCc-----CHhHHHHHhCHHHHHHHH
Confidence            456799999999999999999999999999999863              1111111     112223334566777666


Q ss_pred             HHHHHHHHHcCCcEEEEcccHH
Q 045245          212 LRAIDKIIENGHLHIIVGGSNT  233 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PILVGGTgl  233 (251)
                      .+.++++...+..+|-+||...
T Consensus        64 ~~~l~~l~~~~~~vi~~ggg~v   85 (172)
T PRK05057         64 EKVINELTEKQGIVLATGGGSV   85 (172)
T ss_pred             HHHHHHHHhCCCEEEEcCCchh
Confidence            7778887766666666777644

>PRK08356 hypothetical protein; Provisional

Probab=98.60  E-value=5.9e-08  Score=82.48  Aligned_cols=66  Identities=17%  Similarity=0.079  Sum_probs=48.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      ..+|+|+||+||||||+|+.|+ +++..+|+.           ++..++..+..+.+|+|++...+....+..+|.++
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~-----------~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~   70 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSC-----------SDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIEL   70 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeC-----------CCcccccccccccccccccHHHHhhccccccHHHH
Confidence            3689999999999999999996 588888876           34445556667788999888776655444444443

>PRK06217 hypothetical protein; Validated

Probab=98.55  E-value=4.2e-07  Score=76.40  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ  168 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q  168 (251)
                      ..|+|+|++||||||+|++|+++++.++++.|.+.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~   36 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYF   36 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCcee
Confidence            46999999999999999999999999999999864

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.54  E-value=1.3e-07  Score=85.81  Aligned_cols=83  Identities=23%  Similarity=0.332  Sum_probs=72.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCC---ceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSG---EAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~---~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      +.++|+||+|+||+|+..+|-++++.   .++           +.+|+.|++.|..+..||+++..++..++...+|.+.
T Consensus        38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsv-----------S~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~  106 (231)
T KOG0707|consen   38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSV-----------SHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEF  106 (231)
T ss_pred             ceEEEeCCCCcchhHHHHHHHHHcCCcceEEe-----------cCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhh
Confidence            89999999999999999999999986   233           4578899999999999999999999998888888888


Q ss_pred             H----------HHHHHHHHHcCCcEEE
Q 045245          211 A----------LRAIDKIIENGHLHII  227 (251)
Q Consensus       211 A----------~k~I~eI~~~Gk~PIL  227 (251)
                      +          +++++++...|+..|+
T Consensus       107 a~~~gn~yGtsi~av~~~~~~gk~~il  133 (231)
T KOG0707|consen  107 ATFSGNKYGTSIAAVQRLMLSGKVCIL  133 (231)
T ss_pred             hhhhcccCCchHHHHHHHHhcCCccee
Confidence            7          4678888888888776

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.50  E-value=5.7e-08  Score=87.25  Aligned_cols=54  Identities=22%  Similarity=0.370  Sum_probs=42.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCc---eEecCCcceecccccccCCCCccccCCCCe
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE---AINSNKIQVYKGLDIATNKVTASERQGVPH  190 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~---VIS~Ds~QvYk~lsIgTakP~~eEr~gvpH  190 (251)
                      .+..+|.|+|+|||||||+|++|.+.++.+   +|+.|.+  |+.-+    ..+.+|+..+++
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y--Yk~~~----~~~~~~~~~~n~   62 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY--YKDQS----HLPFEERNKINY   62 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc--ccchh----hcCHhhcCCcCc
Confidence            345799999999999999999999999965   9999998  67443    345566655443

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.47  E-value=4.2e-07  Score=71.49  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=31.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|+++||+||||||+|+.|++.++..+|+.|.+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~   33 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEI   33 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHH
Confidence            589999999999999999999999999999985

...

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.47  E-value=4.3e-07  Score=74.05  Aligned_cols=33  Identities=21%  Similarity=0.480  Sum_probs=30.6

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ  168 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q  168 (251)
                      |+|+||+||||||+|+.|++.++..+++.|.+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~   33 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH   33 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence            578999999999999999999999999999874

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.43  E-value=1.7e-07  Score=77.48  Aligned_cols=96  Identities=16%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCH---------
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPE---------  204 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsa---------  204 (251)
                      ++++|+||+||||||+++.|+..++..    ..+.  -..+++|+++.   ..+.+|++++..++......         
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~----~~~~--~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGD----PRVH--FVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQA   72 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcC----CcEE--EeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEee
Confidence            579999999999999999999987642    0011  11234555543   34677777776665432111         


Q ss_pred             -HHHHHHHHHHHHHHHHcCCcEEEEcccHHHHHHHHc
Q 045245          205 -EEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVE  240 (251)
Q Consensus       205 -g~F~e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~  240 (251)
                       +.|+... ..+.+....|..+|+.|+ +-+.+.+..
T Consensus        73 ~~~~~g~~-~~i~~~~~~g~~vv~~g~-~~~~~~~~~  107 (179)
T TIGR02322        73 HGLSYGIP-AEIDQWLEAGDVVVVNGS-RAVLPEARQ  107 (179)
T ss_pred             cCccccCh-HHHHHHHhcCCEEEEECC-HHHHHHHHH
Confidence             1222222 246666677887777776 446655543

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08118 topology modulation protein; Reviewed

Probab=98.42  E-value=2.6e-07  Score=77.81  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCccee
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVY  170 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvY  170 (251)
                      +.|+|+||+||||||+|+.|++.++.++++.|.+...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~   38 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK   38 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence            5799999999999999999999999999999987543

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.42  E-value=3.6e-07  Score=72.75  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=30.1

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      |+|+|++||||||+|+.|++.++...++.|.+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~   33 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL   33 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHH
Confidence            78999999999999999999999999999865

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK07261 topology modulation protein; Provisional

Probab=98.41  E-value=3.1e-07  Score=77.36  Aligned_cols=38  Identities=16%  Similarity=0.408  Sum_probs=34.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKG  172 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~  172 (251)
                      .|+|+|+|||||||||+.|++.++.++++.|.+++..+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~   39 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN   39 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc
Confidence            68999999999999999999999999999999875443

>PRK13946 shikimate kinase; Provisional

Probab=98.37  E-value=4.1e-07  Score=76.87  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=32.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      .++.|+++|++||||||+++.||++++.+.+..|.
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~   43 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT   43 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence            34689999999999999999999999999999985

>PRK06547 hypothetical protein; Provisional

Probab=98.32  E-value=7e-07  Score=76.15  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL  173 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l  173 (251)
                      ...+.+|+|.|++||||||+|..|++.++..+++.|.+  |+.+
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~--~~~~   53 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDL--YPGW   53 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccce--eccc
Confidence            46678999999999999999999999999999999996  5543

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.31  E-value=6e-07  Score=76.40  Aligned_cols=92  Identities=21%  Similarity=0.238  Sum_probs=59.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCcccc-CCCCeEEeccCCCCCccCHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASER-QGVPHHLLGFVDPEADYPEEEFCEHAL  212 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr-~gvpHhLVD~~d~~e~fsag~F~e~A~  212 (251)
                      .+++|+||+|||||++|..++++++..++.           +.|++|..+|+ ++++||....  +..-.++..+. +..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~-----------iat~~~~~~e~~~ri~~h~~~R--~~~w~t~E~~~-~l~   67 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLY-----------IATAQPFDDEMAARIAHHRQRR--PAHWQTVEEPL-DLA   67 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEe-----------CcCCCCChHHHHHHHHHHHhcC--CCCCeEecccc-cHH
Confidence            378999999999999999999998754442           57888888875 6777886554  22211222222 223


Q ss_pred             HHHHHHHHcCCcEEEEcccHHHHHHHHc
Q 045245          213 RAIDKIIENGHLHIIVGGSNTYIEALVE  240 (251)
Q Consensus       213 k~I~eI~~~Gk~PILVGGTglYlkaLl~  240 (251)
                      +.+++....+. .|++=+...|+..++.
T Consensus        68 ~~i~~~~~~~~-~VlID~Lt~~~~n~l~   94 (170)
T PRK05800         68 ELLRADAAPGR-CVLVDCLTTWVTNLLF   94 (170)
T ss_pred             HHHHhhcCCCC-EEEehhHHHHHHHHhc
Confidence            33444333333 5666667777777665

>PRK13947 shikimate kinase; Provisional

Probab=98.26  E-value=1.8e-06  Score=70.54  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|+|++||||||+|+.||++++...+..|..
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~   35 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE   35 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh
Confidence            589999999999999999999999999999874

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.26  E-value=2.3e-06  Score=71.35  Aligned_cols=88  Identities=10%  Similarity=0.071  Sum_probs=52.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCc--eEecCCcceecccccccCCCCccccCCCCeEEecc--CCCCCccCHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGE--AINSNKIQVYKGLDIATNKVTASERQGVPHHLLGF--VDPEADYPEEEFC  208 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~--VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~--~d~~e~fsag~F~  208 (251)
                      +++|+++||+||||||+|+.|+++++..  .++.|.+...  ++    ....+..+++..   +.  .+..+. ..+..+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~--~~----~~~~~~~~~~~~---~~~~~~~~~~-~~~~~y   71 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA--LP----LKCQDAEGGIEF---DGDGGVSPGP-EFRLLE   71 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh--cC----hhhccccccccc---CccCCcccch-HHHHHH
Confidence            4799999999999999999999998654  4567765211  11    000000011111   11  111111 123455


Q ss_pred             HHHHHHHHHHHHcCCcEEEEcc
Q 045245          209 EHALRAIDKIIENGHLHIIVGG  230 (251)
Q Consensus       209 e~A~k~I~eI~~~Gk~PILVGG  230 (251)
                      ......+.+..++|..+|+...
T Consensus        72 ~~~~~~~~~~l~~G~~VIvD~~   93 (175)
T cd00227          72 GAWYEAVAAMARAGANVIADDV   93 (175)
T ss_pred             HHHHHHHHHHHhCCCcEEEeee
Confidence            5566778888899999888643

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.23  E-value=9.7e-07  Score=69.37  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      +|+|+|++||||||+|+.|+++++.++++.|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            4899999999999999999999999999988

>PTZ00301 uridine kinase; Provisional

Probab=98.23  E-value=1.5e-06  Score=76.56  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~  167 (251)
                      .++|.|+|||||||||||+.|+++++       ..+++.|.+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y   44 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY   44 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            47999999999999999999988762       248888997

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.22  E-value=2.2e-06  Score=74.53  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=31.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc-CCceEecCCcc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF-SGEAINSNKIQ  168 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~Ds~Q  168 (251)
                      +|+|+|++||||||+|+.|++.+ +..+|+.|.+.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~   35 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFF   35 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEcccccc
Confidence            47899999999999999999999 58899999984

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK14527 adenylate kinase; Provisional

Probab=98.20  E-value=1.1e-06  Score=74.11  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=34.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+++++|+|.||+||||||+|+.|+++++...++.|.+
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~   40 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDI   40 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHH
Confidence            35678999999999999999999999999999988665

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.20  E-value=5.6e-06  Score=63.40  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=28.1

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      |+|.||+|+|||++|+.+|+.++..++..|..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~   32 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS   32 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence            68999999999999999999999877776543

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.19  E-value=1.3e-06  Score=72.08  Aligned_cols=33  Identities=24%  Similarity=0.480  Sum_probs=30.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|+|.||+||||||+|+.||++++...+++|.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~   33 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDL   33 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChH
Confidence            479999999999999999999999999998543

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13949 shikimate kinase; Provisional

Probab=98.18  E-value=2.3e-06  Score=72.24  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.|+|+||+||||||+++.||+.++...+..|.+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~   35 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFF   35 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHH
Confidence            4699999999999999999999999999999864

>PRK08233 hypothetical protein; Provisional

Probab=98.18  E-value=2.3e-06  Score=69.89  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC-CceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS-GEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-~~VIS~Ds~  167 (251)
                      +.+|+|.|++||||||+|..|+++++ ..++..|.+
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~   38 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY   38 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence            47999999999999999999999996 567777775

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.17  E-value=1.4e-06  Score=71.51  Aligned_cols=35  Identities=14%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++|+|.||+||||||+|+.|+++++...++.|.+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~   37 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDL   37 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence            46899999999999999999999999999988654

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.17  E-value=2.3e-06  Score=72.88  Aligned_cols=38  Identities=16%  Similarity=0.279  Sum_probs=33.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~  167 (251)
                      +.++.+|+|+|++|||||||++.|++.++   ..+++.|.+
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~   43 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY   43 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence            35778999999999999999999999984   467899987

>PRK06762 hypothetical protein; Provisional

Probab=98.17  E-value=1.3e-06  Score=71.44  Aligned_cols=35  Identities=14%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~  167 (251)
                      +++|+|+|++||||||+|+.|++.++  ..+++.|.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~   38 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV   38 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence            57999999999999999999999984  567777775

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.17  E-value=1.8e-06  Score=69.39  Aligned_cols=33  Identities=24%  Similarity=0.525  Sum_probs=30.8

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +++|+|++||||||+|+.|++.++..+++.|.+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~   33 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDL   33 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCccc
Confidence            478999999999999999999999999999886

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK03839 putative kinase; Provisional

Probab=98.15  E-value=2e-06  Score=71.53  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|+|+|++||||||+++.||++++...++.|.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~   34 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEF   34 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhh
Confidence            589999999999999999999999999999875

>PRK13948 shikimate kinase; Provisional

Probab=98.15  E-value=3.5e-06  Score=72.77  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=33.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.+..|+++|+.||||||+++.||++++..+|..|..
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~   44 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY   44 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH
Confidence            5567899999999999999999999999999999854

>PRK14530 adenylate kinase; Provisional

Probab=98.14  E-value=2.2e-06  Score=73.81  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=31.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++.|+|+||+||||||+|+.||++++...|+.|.+
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~   37 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDA   37 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHH
Confidence            35799999999999999999999999999988665

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.11  E-value=1.1e-05  Score=60.60  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQ  168 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~Q  168 (251)
                      ..+.++|.||+|+|||++++.+++.+   +..++..|.-+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~   57 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD   57 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence            45789999999999999999999987   55555554443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06696 uridine kinase; Validated

Probab=98.10  E-value=3.9e-06  Score=72.88  Aligned_cols=41  Identities=24%  Similarity=0.339  Sum_probs=33.9

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhc---CCc--eEecCCcc
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHF---SGE--AINSNKIQ  168 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~--VIS~Ds~Q  168 (251)
                      .+...+.+|+|+|++||||||||..|++.+   +..  +++.|.+.
T Consensus        17 ~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         17 LNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             hCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            345678899999999999999999999998   333  45689874

>PRK14531 adenylate kinase; Provisional

Probab=98.09  E-value=3.7e-06  Score=70.87  Aligned_cols=34  Identities=12%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.|+|.||+||||||+++.||++++...|+++.+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~   36 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDL   36 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccH
Confidence            4699999999999999999999999999998544

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.08  E-value=2.5e-06  Score=70.02  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=31.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.|+|+|++||||||+++.||++++.+.+..|.+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~   36 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW   36 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence            4688899999999999999999999999999875

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.08  E-value=3e-06  Score=70.09  Aligned_cols=32  Identities=19%  Similarity=0.405  Sum_probs=30.2

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      |+|.||+||||||+|+.|+++++...+++|.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l   33 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDL   33 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence            79999999999999999999999999998765

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.07  E-value=2.9e-06  Score=73.03  Aligned_cols=33  Identities=21%  Similarity=0.456  Sum_probs=30.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.|||||||||+|++|+++++.+.++.|.+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~   34 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDI   34 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHH
Confidence            689999999999999999999999999987765

>TIGR00017 cmk cytidylate kinase

Probab=98.07  E-value=1e-05  Score=71.32  Aligned_cols=38  Identities=16%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL  173 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l  173 (251)
                      .+|.|.||+||||||+++.|+++++..++..|.+  |+.+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~--~r~~   40 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAM--YRAI   40 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchH--HHHH
Confidence            6899999999999999999999999999988765  5443

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK14532 adenylate kinase; Provisional

Probab=98.06  E-value=3.5e-06  Score=70.36  Aligned_cols=33  Identities=15%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+|+.||++++...|+.|.+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~   34 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDM   34 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHH
Confidence            488999999999999999999999999998654

>PLN02200 adenylate kinase family protein

Probab=98.06  E-value=4.3e-06  Score=74.36  Aligned_cols=39  Identities=15%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++..+.+|+|.||+||||||+|..|+++++...|+.+.+
T Consensus        39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdl   77 (234)
T PLN02200         39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDL   77 (234)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHH
Confidence            345678999999999999999999999999999988554

>TIGR00235 udk uridine kinase

Probab=98.05  E-value=5.1e-06  Score=71.15  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=33.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~  167 (251)
                      .+++.+|+|+||+|||||||++.|+..++   ..+++.|.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~   43 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY   43 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence            46778999999999999999999998876   568888886

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.05  E-value=4.1e-06  Score=74.59  Aligned_cols=35  Identities=17%  Similarity=0.422  Sum_probs=32.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc-CCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF-SGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~Ds~  167 (251)
                      +++|+++|++||||||+|+.|++++ +...++.|.+
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~   37 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL   37 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH
Confidence            4789999999999999999999999 7899999885

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.04  E-value=1.2e-05  Score=66.61  Aligned_cols=28  Identities=21%  Similarity=0.394  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++..|+|.|++||||||+|+.|++++.
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999885

>PRK12338 hypothetical protein; Provisional

Probab=98.04  E-value=1e-05  Score=76.17  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE-ecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI-NSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI-S~Ds~  167 (251)
                      .++.+|+|.|++||||||+|..||++++...+ +.|.+
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~   39 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFI   39 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHH
Confidence            35689999999999999999999999998755 66765

>PRK00625 shikimate kinase; Provisional

Probab=98.03  E-value=4.7e-06  Score=71.27  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=31.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|+|++||||||+++.||++++...+..|.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~   34 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDL   34 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHH
Confidence            489999999999999999999999999999875

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.02  E-value=9e-06  Score=71.73  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=34.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKG  172 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~  172 (251)
                      ++.+|+|.||+||||||+|+.||++++...++.|.+  |+.
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~--~r~   41 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM--YRA   41 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh--HHH
Confidence            357999999999999999999999999999988875  554

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.99  E-value=7.9e-06  Score=72.90  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=32.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..|+|.||+||||||+|+.||++++...|+.|.+
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdl   40 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGNI   40 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEECChH
Confidence            4599999999999999999999999999999886

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=97.97  E-value=8.7e-06  Score=81.20  Aligned_cols=96  Identities=20%  Similarity=0.301  Sum_probs=77.7

Q ss_pred             hhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCH
Q 045245          125 VITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPE  204 (251)
Q Consensus       125 ~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsa  204 (251)
                      ++-....+.+.+++.|+.|+|-..|-++|....+...-        --.+++|+.|++.|.+|++|||+...++..++.+
T Consensus       332 V~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~--------~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~  403 (542)
T KOG0609|consen  332 VVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFG--------TAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRA  403 (542)
T ss_pred             HhhhcccccceEEEECCcccchHHHHHHHHhhCccccc--------cCCCCcCCCCCCCCCCCccceeeehHHHhhhhhc
Confidence            33344577799999999999999999998776542211        2358899999999999999999999999888776


Q ss_pred             HHHHHH----------HHHHHHHHHHcCCcEEEE
Q 045245          205 EEFCEH----------ALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       205 g~F~e~----------A~k~I~eI~~~Gk~PILV  228 (251)
                      +.|+++          ..+.+..++..||++||.
T Consensus       404 ~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLd  437 (542)
T KOG0609|consen  404 GKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLD  437 (542)
T ss_pred             CCceecCcchhccccchHHHHHHHHHhCCEEEEe
Confidence            666654          468899999999999984

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.95  E-value=7.6e-06  Score=66.21  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|+|+|++||||||+|+.|+++++.++++.|.+
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~   34 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDI   34 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceecHHHH
Confidence            689999999999999999999999999998653

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK14528 adenylate kinase; Provisional

Probab=97.95  E-value=8e-06  Score=69.53  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=31.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.|+|+||+||||||+|+.|+++++.+++++|.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~   35 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDI   35 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHH
Confidence            5689999999999999999999999999999876

>PRK01184 hypothetical protein; Provisional

Probab=97.94  E-value=9.5e-06  Score=67.54  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=28.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ++|+|+||+||||||+++ ++++++.+++++|
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~   32 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMG   32 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhh
Confidence            589999999999999987 8899999999974

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.94  E-value=1e-05  Score=69.69  Aligned_cols=33  Identities=15%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+|+.||++++...++.+.+
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl   34 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDM   34 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCcc
Confidence            589999999999999999999999999998654

>PRK02496 adk adenylate kinase; Provisional

Probab=97.94  E-value=7.6e-06  Score=68.29  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.++|.||+||||||+|+.|+++++...++.|.+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~   35 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDI   35 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHH
Confidence            4689999999999999999999999999988654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.94  E-value=1.3e-05  Score=59.10  Aligned_cols=28  Identities=29%  Similarity=0.498  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGE  160 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~  160 (251)
                      +..++|.||+||||||+++.|+..+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4689999999999999999999988753

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.94  E-value=8.5e-06  Score=69.13  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=28.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCC---------ceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSG---------EAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~---------~VIS~Ds~  167 (251)
                      +|.|+||+||||||+|++|++.++.         .+++.|.+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~   42 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF   42 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence            6899999999999999999999972         36667765

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR01351 adk adenylate kinases

Probab=97.93  E-value=7.7e-06  Score=70.19  Aligned_cols=32  Identities=16%  Similarity=0.360  Sum_probs=29.9

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      |+|.||+||||||+|+.|+++++...|+++.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdl   33 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDL   33 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHH
Confidence            78999999999999999999999999998654

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.93  E-value=7.8e-06  Score=71.75  Aligned_cols=37  Identities=24%  Similarity=0.507  Sum_probs=32.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL  173 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l  173 (251)
                      +|.|+||+||||||+|+.||+++|.+++|+..+  |+++
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~i--FR~~   38 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTI--FREM   38 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCceeeccHH--HHHH
Confidence            689999999999999999999999999997543  5543

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.93  E-value=1.4e-05  Score=69.71  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCc-eEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGE-AINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~-VIS~Ds~  167 (251)
                      ++++|+|.|++||||||+|..|+++++.. +++.|.+
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~   38 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYL   38 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHH
Confidence            45799999999999999999999999875 5666765

>PRK04182 cytidylate kinase; Provisional

Probab=97.92  E-value=8.9e-06  Score=66.17  Aligned_cols=32  Identities=19%  Similarity=0.345  Sum_probs=29.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      +|+|+|++||||||+|+.||++++.+++++|.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~   33 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGE   33 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEecHHH
Confidence            68999999999999999999999999998654

>PRK15453 phosphoribulokinase; Provisional

Probab=97.92  E-value=7.9e-06  Score=76.33  Aligned_cols=40  Identities=18%  Similarity=0.403  Sum_probs=34.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCccee
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVY  170 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvY  170 (251)
                      .++++|+|+|+|||||||++++|++.++     ..+++.|+++-|
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~y   47 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRY   47 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccccc
Confidence            5678999999999999999999998774     468999998654

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.91  E-value=1.6e-05  Score=71.79  Aligned_cols=39  Identities=33%  Similarity=0.462  Sum_probs=34.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-CceEecCCcceec
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-GEAINSNKIQVYK  171 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-~~VIS~Ds~QvYk  171 (251)
                      +|-.+|.|+|.|.|||||||+.|.+-++ +.+|+.|.+  ||
T Consensus         2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDF--yK   41 (225)
T KOG3308|consen    2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDF--YK   41 (225)
T ss_pred             ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccc--cC
Confidence            3447899999999999999999999997 679999997  55

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.90  E-value=9.4e-06  Score=61.90  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             EEEEcCCccCHHHHHHHHHHhc
Q 045245          136 VFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      |+|+|+|||||||+|+.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998

...

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.88  E-value=1.8e-05  Score=72.77  Aligned_cols=88  Identities=17%  Similarity=0.285  Sum_probs=55.7

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHH
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEE  205 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag  205 (251)
                      ..+...++..|+|+|++||||||+++.|+++++..++..|.. +.+.             .|.     +..++...+...
T Consensus       126 ~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~-i~~~-------------~G~-----~i~ei~~~~G~~  186 (309)
T PRK08154        126 AGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNRE-IERE-------------AGL-----SVSEIFALYGQE  186 (309)
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHH-HHHH-------------hCC-----CHHHHHHHHCHH
Confidence            335567778999999999999999999999999999987742 1111             111     011111123345


Q ss_pred             HHHHHHHHHHHHHHHcCCcEEEEcccH
Q 045245          206 EFCEHALRAIDKIIENGHLHIIVGGSN  232 (251)
Q Consensus       206 ~F~e~A~k~I~eI~~~Gk~PILVGGTg  232 (251)
                      .|.+.-.+.+.++.......||..|.+
T Consensus       187 ~fr~~e~~~l~~ll~~~~~~VI~~Ggg  213 (309)
T PRK08154        187 GYRRLERRALERLIAEHEEMVLATGGG  213 (309)
T ss_pred             HHHHHHHHHHHHHHhhCCCEEEECCCc
Confidence            566666677777665444455544443

>PF13173 AAA_14: AAA domain

Probab=97.88  E-value=2.2e-05  Score=62.51  Aligned_cols=90  Identities=21%  Similarity=0.252  Sum_probs=54.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC----CceEecCCcceecccc-----cccCCCCccccCCCCeEEeccCCCCCccC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS----GEAINSNKIQVYKGLD-----IATNKVTASERQGVPHHLLGFVDPEADYP  203 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~----~~VIS~Ds~QvYk~ls-----IgTakP~~eEr~gvpHhLVD~~d~~e~fs  203 (251)
                      .++++|.||.|+||||+++.+++.+.    ...++.|........+     .....    ...+..+-++|+..--.   
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~iDEiq~~~---   74 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL----IKPGKKYIFIDEIQYLP---   74 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh----hccCCcEEEEehhhhhc---
Confidence            37899999999999999999998875    4566666654322110     00000    00145677777654332   


Q ss_pred             HHHHHHHHHHHHHHHHHcC-CcEEEEcccHHHH
Q 045245          204 EEEFCEHALRAIDKIIENG-HLHIIVGGSNTYI  235 (251)
Q Consensus       204 ag~F~e~A~k~I~eI~~~G-k~PILVGGTglYl  235 (251)
                            +....++.+.+.+ +..|++-||..-.
T Consensus        75 ------~~~~~lk~l~d~~~~~~ii~tgS~~~~  101 (128)
T PF13173_consen   75 ------DWEDALKFLVDNGPNIKIILTGSSSSL  101 (128)
T ss_pred             ------cHHHHHHHHHHhccCceEEEEccchHH
Confidence                  3344555555555 5677777775443

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.86  E-value=2.5e-05  Score=66.62  Aligned_cols=84  Identities=23%  Similarity=0.340  Sum_probs=48.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC--ccCH
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA--DYPE  204 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e--~fsa  204 (251)
                      ..+|..+++.|++||||||++..+.+.+   +..+|+.|.+.-+-        |...+...        ..+.+  ....
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~--------p~~~~~~~--------~~~~~~~~~~~   75 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH--------PDYDELLK--------ADPDEASELTQ   75 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS--------TTHHHHHH--------HHCCCTHHHHH
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc--------cchhhhhh--------hhhhhhHHHHH
Confidence            4778899999999999999999999987   46789999863111        33332211        11111  1122


Q ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEc
Q 045245          205 EEFCEHALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       205 g~F~e~A~k~I~eI~~~Gk~PILVG  229 (251)
                      .+-..++.+.++.+.+++...|+.|
T Consensus        76 ~~a~~~~~~~~~~a~~~~~nii~E~  100 (199)
T PF06414_consen   76 KEASRLAEKLIEYAIENRYNIIFEG  100 (199)
T ss_dssp             HHHHHHHHHHHHHHHHCT--EEEE-
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEec
Confidence            2233345567788888888777754

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK07667 uridine kinase; Provisional

Probab=97.86  E-value=2.1e-05  Score=67.21  Aligned_cols=40  Identities=13%  Similarity=0.174  Sum_probs=33.7

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      .+.....+|+|.|++||||||+|..|++.++     ..+++.|.+
T Consensus        12 ~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~   56 (193)
T PRK07667         12 KHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY   56 (193)
T ss_pred             hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence            3445668999999999999999999999874     459999986

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.85  E-value=2.2e-05  Score=69.06  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=28.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~  167 (251)
                      +|.|.||+||||||+|+.|+..+.       ..+++.|.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            478999999999999999998873       358899997

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.85  E-value=3.3e-05  Score=76.39  Aligned_cols=43  Identities=19%  Similarity=0.375  Sum_probs=37.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCc-eEecCCc-ceeccc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE-AINSNKI-QVYKGL  173 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~-VIS~Ds~-QvYk~l  173 (251)
                      .++.+|+++|+||+||||+|.+||+.++.. +|+.|.+ ++++++
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~  297 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM  297 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence            358899999999999999999999999987 8899994 656544

>PRK05439 pantothenate kinase; Provisional

Probab=97.84  E-value=3.4e-05  Score=72.34  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=33.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQ  168 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~Q  168 (251)
                      +..++.+|+|+|++||||||+|+.|++.++       ..+|+.|.+.
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            445678999999999999999999998653       4699999983

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=97.84  E-value=1.5e-05  Score=68.77  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=32.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+|+.||||||+++.|++.+|..++++|.+
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~   35 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIY   35 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHH
Confidence            5799999999999999999999999999999987

>PLN02674 adenylate kinase

Probab=97.83  E-value=1.8e-05  Score=71.83  Aligned_cols=41  Identities=12%  Similarity=0.178  Sum_probs=35.2

Q ss_pred             hccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          127 TMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       127 ~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++.+..+.|+|.||+||||||+|..||++++...||.+.+
T Consensus        25 ~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~Gdl   65 (244)
T PLN02674         25 KCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDM   65 (244)
T ss_pred             hhccccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHH
Confidence            33445567899999999999999999999999999998765

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.82  E-value=1.6e-05  Score=67.02  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=29.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~  167 (251)
                      +|+|+||+||||||+++.|+..++   ..+++.|.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~   36 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY   36 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            478999999999999999999873   579999975

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.80  E-value=4.1e-05  Score=67.34  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=22.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +|+++|++||||||+|+.|++.+.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999873

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=97.79  E-value=2.3e-05  Score=67.09  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=31.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+|++||||||++..|++ ++..++++|.+
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~   35 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI   35 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence            6899999999999999999998 99999999986

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.79  E-value=4.2e-05  Score=70.92  Aligned_cols=39  Identities=21%  Similarity=0.220  Sum_probs=31.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQ  168 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~Q  168 (251)
                      ..++.+|.|.||+||||||+|+.|...+.       ..+++.|.+.
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            35678999999999999999988866552       4578999974

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.78  E-value=2e-05  Score=78.26  Aligned_cols=41  Identities=12%  Similarity=0.379  Sum_probs=37.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL  173 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l  173 (251)
                      .++.+|.|.||+||||||+|+.|+++++...++.|.+  ||.+
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~--YR~~  322 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM--YRAV  322 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce--ehHH
Confidence            3668999999999999999999999999999999986  8875

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.76  E-value=2.7e-05  Score=67.75  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      |++++++||||+||||.+.+||..+.     ..+|++|.+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~   40 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY   40 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence            57999999999999999999997663     469999987

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.75  E-value=2.3e-05  Score=65.93  Aligned_cols=32  Identities=22%  Similarity=0.355  Sum_probs=30.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|+|+|++||||||+++.|++ ++..++++|.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~   32 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI   32 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence            489999999999999999998 89999999976

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK04040 adenylate kinase; Provisional

Probab=97.75  E-value=3.2e-05  Score=66.62  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc--CCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF--SGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l--~~~VIS~Ds~  167 (251)
                      +++|+|+|++||||||+++.|++++  +..+++.|++
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~   38 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV   38 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence            5789999999999999999999999  6778887764

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.75  E-value=2.2e-05  Score=66.70  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQ  168 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~Q  168 (251)
                      +|+|.|+|||||||||..|++.+     +..+|+.|.+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~   39 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY   39 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence            47899999999999999999986     35799999984

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.73  E-value=0.00011  Score=63.63  Aligned_cols=101  Identities=13%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCC--ceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSG--EAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~--~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      ++|++.|||.|||||||+.|.+.++.  ..++.|.+.  +.++-....+      +..-.+-... +...-....++...
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~--~~~~~~~~~~------~~g~~~~~~~-~~~~~~~~~~~~~~   72 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFV--DMMPPGRYRP------GDGLEPAGDR-PDGGPLFRRLYAAM   72 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHH--HHS-GGGGTS------TTSEEEETTS-EEE-HHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHH--hhcCcccccC------CccccccccC-CchhHHHHHHHHHH
Confidence            68999999999999999999999975  477888762  2121111111      1011111100 00011233444445


Q ss_pred             HHHHHHHHHcCCcEEEE----ccc--HHHHHHHHcCCc
Q 045245          212 LRAIDKIIENGHLHIIV----GGS--NTYIEALVEDSI  243 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PILV----GGT--glYlkaLl~g~~  243 (251)
                      .+.+....+.|..+|+.    |+-  .=+++.++.|++
T Consensus        73 ~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~  110 (174)
T PF07931_consen   73 HAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLP  110 (174)
T ss_dssp             HHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCc
Confidence            67777788889998874    332  456667777765

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.73  E-value=1.8e-05  Score=64.19  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=27.3

Q ss_pred             EEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          138 VMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       138 IsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      |.|||||||||+|..||++++...|+++.+
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~l   30 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDL   30 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHH
Confidence            689999999999999999999999998543

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.72  E-value=3e-05  Score=67.62  Aligned_cols=80  Identities=19%  Similarity=0.324  Sum_probs=52.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALR  213 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k  213 (251)
                      +.|+++|+.|+||||+.+.||+.++...+-.|..              -+++.+     .+..++.+..--..|.+.=.+
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~--------------Ie~~~g-----~sI~eIF~~~GE~~FR~~E~~   63 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE--------------IEKRTG-----MSIAEIFEEEGEEGFRRLETE   63 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH--------------HHHHHC-----cCHHHHHHHHhHHHHHHHHHH
Confidence            5789999999999999999999999998877753              111111     222222233334556655567


Q ss_pred             HHHHHHHcCCcEEEEcccH
Q 045245          214 AIDKIIENGHLHIIVGGSN  232 (251)
Q Consensus       214 ~I~eI~~~Gk~PILVGGTg  232 (251)
                      .++++...+..+|=.||-.
T Consensus        64 vl~~l~~~~~~ViaTGGG~   82 (172)
T COG0703          64 VLKELLEEDNAVIATGGGA   82 (172)
T ss_pred             HHHHHhhcCCeEEECCCcc
Confidence            7888888775444455543

>PRK06893 DNA replication initiation factor; Validated

Probab=97.68  E-value=0.00011  Score=64.42  Aligned_cols=91  Identities=15%  Similarity=0.257  Sum_probs=53.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE  206 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~  206 (251)
                      ..+.++|.||+|+|||+|+.+++.++     +...++++..+.+      +.+ ..+.....+--++|..+...  ...+
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~------~~~-~~~~~~~~dlLilDDi~~~~--~~~~  108 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF------SPA-VLENLEQQDLVCLDDLQAVI--GNEE  108 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh------hHH-HHhhcccCCEEEEeChhhhc--CChH
Confidence            34578999999999999999999875     3344444321100      000 01122344566777655322  1223


Q ss_pred             HHHHHHHHHHHHHHcCCcEEEEccc
Q 045245          207 FCEHALRAIDKIIENGHLHIIVGGS  231 (251)
Q Consensus       207 F~e~A~k~I~eI~~~Gk~PILVGGT  231 (251)
                      +.+.....++...++|+.+||++++
T Consensus       109 ~~~~l~~l~n~~~~~~~~illits~  133 (229)
T PRK06893        109 WELAIFDLFNRIKEQGKTLLLISAD  133 (229)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEeCC
Confidence            4445566677777777777777664

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.65  E-value=0.0001  Score=73.54  Aligned_cols=38  Identities=13%  Similarity=0.203  Sum_probs=34.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..++.+|+++|++||||||+|+++++..+..+||.|.+
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l  403 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL  403 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence            46788999999999999999999999999999999864

Note that the EC number for the kinase function is: 2.7.1.78

>PLN02348 phosphoribulokinase

Probab=97.64  E-value=5.8e-05  Score=73.15  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=35.3

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC--------------------ceEecCCcce
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSG--------------------EAINSNKIQV  169 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~--------------------~VIS~Ds~Qv  169 (251)
                      .+..++.+|.|.|++||||||||++|++.++.                    .+|+.|.+..
T Consensus        44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~  105 (395)
T PLN02348         44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS  105 (395)
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccC
Confidence            34467789999999999999999999998862                    4899999754

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.64  E-value=6.9e-05  Score=64.97  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.+.+|+|+|++||||||++..|++ ++..++++|.+
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i   38 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRV   38 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHH
Confidence            3457899999999999999999986 89999999954

>PRK07429 phosphoribulokinase; Provisional

Probab=97.61  E-value=6.6e-05  Score=70.49  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=34.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~  167 (251)
                      +..++.+|.|.|++||||||+++.|++.++   ..+++.|.+
T Consensus         4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~   45 (327)
T PRK07429          4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY   45 (327)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence            446778999999999999999999999987   568899986

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.61  E-value=7.1e-05  Score=66.08  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=33.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+.+|+|+|+.||||||+++.|+++++..++.+|.+
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i   40 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTI   40 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence            457899999999999999999999999999999986

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.59  E-value=7.6e-05  Score=69.72  Aligned_cols=42  Identities=19%  Similarity=0.369  Sum_probs=37.2

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC-ceEecCCc
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSG-EAINSNKI  167 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~-~VIS~Ds~  167 (251)
                      ..+.+..+.+|+|=|+||+||||+|-.||.++|. .+|+.|++
T Consensus        82 ~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I  124 (299)
T COG2074          82 RIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI  124 (299)
T ss_pred             HHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence            3456778899999999999999999999999997 48999987

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.59  E-value=6.7e-05  Score=54.63  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=21.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +|+|+|++||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999995

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.59  E-value=0.00012  Score=64.70  Aligned_cols=106  Identities=9%  Similarity=0.162  Sum_probs=58.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecccccccCCCC-ccccCCCCeEEeccCCCCCccCHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKGLDIATNKVT-ASERQGVPHHLLGFVDPEADYPEE  205 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~lsIgTakP~-~eEr~gvpHhLVD~~d~~e~fsag  205 (251)
                      ....++|.||+|+|||+|+..++++..     ...+++|...-+        .+. .+.....+.-++|..+.-.  ...
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~dlliiDdi~~~~--~~~  113 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQLSLVCIDNIECIA--GDE  113 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhhCCEEEEeChhhhc--CCH
Confidence            446899999999999999999988654     234444332100        000 1112223455666554321  113


Q ss_pred             HHHHHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCchhhhcc
Q 045245          206 EFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRAN  249 (251)
Q Consensus       206 ~F~e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~~~~~~~  249 (251)
                      ++.+.....++...+.|+..+|..|+.-..+  +....+++|-|
T Consensus       114 ~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~--l~~~~~~L~SR  155 (235)
T PRK08084        114 LWEMAIFDLYNRILESGRTRLLITGDRPPRQ--LNLGLPDLASR  155 (235)
T ss_pred             HHHHHHHHHHHHHHHcCCCeEEEeCCCChHH--cCcccHHHHHH
Confidence            4444555667777777876666666644422  23344555544

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.58  E-value=7e-05  Score=62.04  Aligned_cols=37  Identities=22%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      .++.+|+|.|++||||||+|+.|++.+.     ..++..|.+
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~   43 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV   43 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence            3567999999999999999999999873     345666654

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.58  E-value=0.00035  Score=58.45  Aligned_cols=77  Identities=22%  Similarity=0.178  Sum_probs=55.9

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF  207 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F  207 (251)
                      .+..||.++-+.||||+|||.+++.||+.+            |+.          +....-=|+++...++...-.+.+|
T Consensus        48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l------------y~~----------G~~S~~V~~f~~~~hFP~~~~v~~Y  105 (127)
T PF06309_consen   48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL------------YKS----------GMKSPFVHQFIATHHFPHNSNVDEY  105 (127)
T ss_pred             CCCCCCEEEEeecCCCCcHHHHHHHHHHHH------------Hhc----------ccCCCceeeecccccCCCchHHHHH
Confidence            456777788899999999999999999986            221          0111223556777777777789999


Q ss_pred             HHHHHHHHHHHHHcCCcEE
Q 045245          208 CEHALRAIDKIIENGHLHI  226 (251)
Q Consensus       208 ~e~A~k~I~eI~~~Gk~PI  226 (251)
                      .++.++.|.+...+-...+
T Consensus       106 k~~L~~~I~~~v~~C~rsl  124 (127)
T PF06309_consen  106 KEQLKSWIRGNVSRCPRSL  124 (127)
T ss_pred             HHHHHHHHHHHHHhCCcCe
Confidence            9999999988777544333

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.58  E-value=0.00024  Score=59.43  Aligned_cols=29  Identities=17%  Similarity=0.455  Sum_probs=26.6

Q ss_pred             EcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          139 MGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       139 sGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +||+||||||+++.|++.++...+..|.+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~   29 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL   29 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence            59999999999999999999888888865

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.57  E-value=0.00018  Score=59.27  Aligned_cols=23  Identities=22%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++|+|++||||||+|+.|++.+
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l   23 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKL   23 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999988

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PLN02199 shikimate kinase

Probab=97.57  E-value=9.2e-05  Score=69.67  Aligned_cols=82  Identities=13%  Similarity=0.238  Sum_probs=53.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCcccc-CCCCeEEeccCCCCCccCHHHHH
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASER-QGVPHHLLGFVDPEADYPEEEFC  208 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr-~gvpHhLVD~~d~~e~fsag~F~  208 (251)
                      .-+++.|+|+|++||||||+++.||+.++..+|.+|.+=              ++. .+     .+..++.+.+-...|.
T Consensus        99 ~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lI--------------e~~~~G-----~sI~eIf~~~GE~~FR  159 (303)
T PLN02199         99 YLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLI--------------EQAMNG-----TSVAEIFVHHGENFFR  159 (303)
T ss_pred             HcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHH--------------HHHhcC-----CCHHHHHHHhCHHHHH
Confidence            344678999999999999999999999999999998741              110 00     1111222333445666


Q ss_pred             HHHHHHHHHHHHcCCcEEEEcc
Q 045245          209 EHALRAIDKIIENGHLHIIVGG  230 (251)
Q Consensus       209 e~A~k~I~eI~~~Gk~PILVGG  230 (251)
                      +.-.+.+.++......+|=+||
T Consensus       160 ~~E~e~L~~L~~~~~~VIStGG  181 (303)
T PLN02199        160 GKETDALKKLSSRYQVVVSTGG  181 (303)
T ss_pred             HHHHHHHHHHHhcCCEEEECCC
Confidence            6666777777655444443566

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.56  E-value=0.00013  Score=64.86  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +...-+++.||+|+||||+|+.+|+.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            334678999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.55  E-value=8e-05  Score=73.84  Aligned_cols=81  Identities=16%  Similarity=0.282  Sum_probs=52.6

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      +.+.|+++|++||||||+++.||++++.+.+..|.. +             +++.|     .+..++.+..-...|.+.=
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~-i-------------e~~~g-----~si~eif~~~Ge~~FR~~E   65 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE-I-------------EREIG-----MSIPSYFEEYGEPAFREVE   65 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH-H-------------HHHHC-----cCHHHHHHHHHHHHHHHHH
Confidence            447899999999999999999999999999999874 1             11111     1111222233345565555


Q ss_pred             HHHHHHHHHcCCcEEEEccc
Q 045245          212 LRAIDKIIENGHLHIIVGGS  231 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PILVGGT  231 (251)
                      .+.++++......+|-+||-
T Consensus        66 ~~~l~~~~~~~~~VIs~GGG   85 (542)
T PRK14021         66 ADVVADMLEDFDGIFSLGGG   85 (542)
T ss_pred             HHHHHHHHhcCCeEEECCCc
Confidence            56677776544443336664

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.54  E-value=0.00011  Score=64.07  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=32.4

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC-----ce-EecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG-----EA-INSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~-----~V-IS~Ds~  167 (251)
                      +..++.+++|.||+|||||||++.|+..+..     .+ ++.|.+
T Consensus        29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~   73 (229)
T PRK09270         29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF   73 (229)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence            4467889999999999999999999988752     24 888875

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.54  E-value=9.7e-05  Score=63.01  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=28.9

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++.+|+|+|++||||||||+.|++.+
T Consensus        17 ~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         17 EQLHGHKGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45677889999999999999999999999976

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.53  E-value=8e-05  Score=63.59  Aligned_cols=91  Identities=16%  Similarity=0.236  Sum_probs=57.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccC-CCCeEEeccCCCCCccCHHHHHHHHHH
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQ-GVPHHLLGFVDPEADYPEEEFCEHALR  213 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~-gvpHhLVD~~d~~e~fsag~F~e~A~k  213 (251)
                      +++|+|++|||||++|..++...+..++..           .|.++-..|++ .+..| ... . ...|+..++..+..+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~-----------at~~~~d~em~~rI~~H-~~~-R-~~~w~t~E~~~~l~~   66 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGGPVTYI-----------ATAEAFDDEMAERIARH-RKR-R-PAHWRTIETPRDLVS   66 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCeEEE-----------EccCcCCHHHHHHHHHH-HHh-C-CCCceEeecHHHHHH
Confidence            378999999999999999998865544433           45556555543 23333 111 1 334555555555556


Q ss_pred             HHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245          214 AIDKIIENGHLHIIVGGSNTYIEALVED  241 (251)
Q Consensus       214 ~I~eI~~~Gk~PILVGGTglYlkaLl~g  241 (251)
                      .+.+..  +..+||+=+-..|+..++.+
T Consensus        67 ~l~~~~--~~~~VLIDclt~~~~n~l~~   92 (169)
T cd00544          67 ALKELD--PGDVVLIDCLTLWVTNLLFA   92 (169)
T ss_pred             HHHhcC--CCCEEEEEcHhHHHHHhCCC
Confidence            654431  44567877788888888764

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.53  E-value=7.4e-05  Score=65.83  Aligned_cols=41  Identities=22%  Similarity=0.315  Sum_probs=36.9

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ  168 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q  168 (251)
                      ++.+-+-+|+|+|++||||||++++|+++++.+.+-+|.++
T Consensus         7 t~~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~H   47 (191)
T KOG3354|consen    7 TMGPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLH   47 (191)
T ss_pred             ccCCCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCC
Confidence            34566679999999999999999999999999999999885

>TIGR00152 dephospho-CoA kinase

Probab=97.53  E-value=7.2e-05  Score=63.04  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=30.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|+|+|+.||||||+++.|++..+..++++|.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~   33 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI   33 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence            489999999999999999999888999999987

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.51  E-value=0.00012  Score=67.02  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=42.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC  208 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~  208 (251)
                      ++|+|+|.|||||||+|+.|++.+.     ..+++-|++.                        ++..+..+.-....-.
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~------------------------~~~~~y~~~~~Ek~~R   57 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG------------------------IDRNDYADSKKEKEAR   57 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-------------------------TTSSS--GGGHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc------------------------cchhhhhchhhhHHHH
Confidence            6899999999999999999999763     2344433331                        1111111112233333


Q ss_pred             HHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245          209 EHALRAIDKIIENGHLHIIVGGSNTYIEALVED  241 (251)
Q Consensus       209 e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g  241 (251)
                      ...+.+++..+.++.++|+.  ..+|++++-..
T Consensus        58 ~~l~s~v~r~ls~~~iVI~D--d~nYiKg~RYe   88 (270)
T PF08433_consen   58 GSLKSAVERALSKDTIVILD--DNNYIKGMRYE   88 (270)
T ss_dssp             HHHHHHHHHHHTT-SEEEE---S---SHHHHHH
T ss_pred             HHHHHHHHHhhccCeEEEEe--CCchHHHHHHH
Confidence            34566677776666554443  35588876543

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.51  E-value=0.00012  Score=62.28  Aligned_cols=35  Identities=23%  Similarity=0.473  Sum_probs=30.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.+++|+||+|+||||+++.|+..++...+..|.+
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~   37 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL   37 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence            46899999999999999999999998877777654

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.49  E-value=8.7e-05  Score=67.25  Aligned_cols=38  Identities=16%  Similarity=0.364  Sum_probs=33.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL  173 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l  173 (251)
                      .+|.|=||+||||||+|+.||++++...++...+  ||-+
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGam--YRa~   42 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAM--YRAV   42 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHH--HHHH
Confidence            7899999999999999999999999988877665  7654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00021  Score=65.71  Aligned_cols=83  Identities=23%  Similarity=0.340  Sum_probs=61.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC--ccCHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA--DYPEEE  206 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e--~fsag~  206 (251)
                      ..+++-+-+|+||+||||||||..|+-.-+-+|.+.+-  .|++-+|+.-.|.+--+.|   .|+.+..|.+  -++..+
T Consensus        26 ~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I--~~~GedI~~l~~~ERAr~G---ifLafQ~P~ei~GV~~~~  100 (251)
T COG0396          26 TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI--LFDGEDILELSPDERARAG---IFLAFQYPVEIPGVTNSD  100 (251)
T ss_pred             eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE--EECCcccccCCHhHHHhcC---CEEeecCCccCCCeeHHH
Confidence            34677899999999999999999998766656666654  3888898776666555555   4677777666  478889


Q ss_pred             HHHHHHHHHH
Q 045245          207 FCEHALRAID  216 (251)
Q Consensus       207 F~e~A~k~I~  216 (251)
                      |.+.|..+..
T Consensus       101 fLr~a~n~~~  110 (251)
T COG0396         101 FLRAAMNARR  110 (251)
T ss_pred             HHHHHHHhhh
Confidence            9887766543

>PRK14526 adenylate kinase; Provisional

Probab=97.46  E-value=0.00012  Score=64.44  Aligned_cols=33  Identities=15%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+++.|++.++...++++.+
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~l   34 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDL   34 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChH
Confidence            478999999999999999999999999988765

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=97.46  E-value=9.3e-05  Score=74.74  Aligned_cols=39  Identities=23%  Similarity=0.330  Sum_probs=34.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL  173 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l  173 (251)
                      .++|+|.||+||||||+|+.||++++.+.+..|.  +|+.+
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~--~~~~~  480 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGA--LYRLT  480 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHH--hhhHH
Confidence            4589999999999999999999999999987775  58776

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.46  E-value=0.00013  Score=57.83  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=23.7

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCce
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEA  161 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~V  161 (251)
                      |+|.||||+|||++|+.+|+.++..+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~   27 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPV   27 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcce
Confidence            78999999999999999999998654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK13975 thymidylate kinase; Provisional

Probab=97.46  E-value=0.00017  Score=60.15  Aligned_cols=28  Identities=25%  Similarity=0.273  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGE  160 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~  160 (251)
                      ++.|+|.|+.||||||+++.|+++++..
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~   29 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF   29 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3689999999999999999999999853

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=97.43  E-value=0.00014  Score=63.00  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+|++||||||+++.|++ +|..++++|.+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i   34 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQV   34 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHH
Confidence            5799999999999999999987 89999999975

>PLN02459 probable adenylate kinase

Probab=97.42  E-value=0.00017  Score=66.40  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=30.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..|+|.||+||||||+|..|+++++...|+.+.+
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdl   63 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDL   63 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHH
Confidence            4588899999999999999999999999987654

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.00017  Score=65.22  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      ...+|+|.||-|+||||||++||++++..++
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            4579999999999999999999999986444

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.40  E-value=0.00016  Score=63.83  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=31.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.+|.|+|.+||||||+|+.+++ +|.+++++|.+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v   35 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDV   35 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHH
Confidence            47899999999999999999999 99999999986

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.37  E-value=0.00017  Score=60.25  Aligned_cols=31  Identities=19%  Similarity=0.431  Sum_probs=27.6

Q ss_pred             hccCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          127 TMNFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       127 ~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+..++.+++|+|++||||||+|+.|+..+
T Consensus        12 ~~~~~~~~~i~i~G~~GsGKstla~~l~~~l   42 (184)
T TIGR00455        12 ALNGHRGVVIWLTGLSGSGKSTIANALEKKL   42 (184)
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4455778999999999999999999999886

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.37  E-value=0.00021  Score=58.35  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=23.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++|+|.|+.||||||+++.|++.++
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~   25 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLE   25 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999984

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.36  E-value=0.00016  Score=73.50  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=34.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLD  174 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ls  174 (251)
                      .+|+|.||+||||||+|+.||++++...++...+  |+.+.
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~--~r~~~   40 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAM--YRACA   40 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcE--eHHHH
Confidence            3789999999999999999999999999988875  77754

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=97.36  E-value=0.00017  Score=65.35  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+|..||||||+++.|.+++|..+|.+|.+
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~i   35 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLV   35 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHH
Confidence            5899999999999999999999999999999986

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.36  E-value=0.00017  Score=60.11  Aligned_cols=27  Identities=15%  Similarity=0.147  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++++|+|.||.||||||+++.|++.++
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~   28 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLE   28 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357999999999999999999999874

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.35  E-value=0.0011  Score=50.98  Aligned_cols=59  Identities=15%  Similarity=0.071  Sum_probs=38.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCcc--ccCCCCeEEeccCCCCCcc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTAS--ERQGVPHHLLGFVDPEADY  202 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~e--Er~gvpHhLVD~~d~~e~f  202 (251)
                      .|+|.|+||+|||||.+.|...- ...++.        .+-.|..+...  +..+.++.++|.-.+.+.-
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~--------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~   61 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKK-LAKVSN--------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGE   61 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTST-SSEESS--------STTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred             CEEEECCCCCCHHHHHHHHhccc-cccccc--------cccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence            47899999999999999998632 122221        13345555332  2456677888888776643

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.34  E-value=0.00015  Score=67.60  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=30.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcce
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQV  169 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Qv  169 (251)
                      +|.|+|+|||||||++++|++.++     ..+|+.|++.-
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            478999999999999999998764     46899999854

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.33  E-value=0.00028  Score=69.44  Aligned_cols=33  Identities=15%  Similarity=0.327  Sum_probs=31.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|+|++||||||+++.||++++...+.+|..
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~   34 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEE   34 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence            489999999999999999999999999999874

>PRK06761 hypothetical protein; Provisional

Probab=97.33  E-value=0.00035  Score=64.80  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      +++|+|.||+||||||+++.|++++...-++.+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~   35 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE   35 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence            468999999999999999999999976545443

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.32  E-value=0.00018  Score=60.04  Aligned_cols=27  Identities=19%  Similarity=0.186  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      +++|+|.|+.||||||+++.|++.++.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999864

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.31  E-value=0.00049  Score=65.74  Aligned_cols=28  Identities=18%  Similarity=0.332  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+.-+|+|.|||||||||...++-...|
T Consensus       123 ~~~GLILVTGpTGSGKSTTlAamId~iN  150 (353)
T COG2805         123 SPRGLILVTGPTGSGKSTTLAAMIDYIN  150 (353)
T ss_pred             CCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence            3446899999999999998888777665

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.30  E-value=0.00019  Score=58.72  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=21.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      +|+|+|+.|+|||||+..|++. +..++
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            4899999999999999999998 76666

>PRK09087 hypothetical protein; Validated

Probab=97.30  E-value=0.0011  Score=58.75  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      ..+.++|.||+|||||+|++.+++..+...++.+.+.  .+  +.+      .... ...++|..+... .+.    +..
T Consensus        43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~--~~--~~~------~~~~-~~l~iDDi~~~~-~~~----~~l  106 (226)
T PRK09087         43 PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG--SD--AAN------AAAE-GPVLIEDIDAGG-FDE----TGL  106 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc--hH--HHH------hhhc-CeEEEECCCCCC-CCH----HHH
Confidence            3467999999999999999999998877777764321  00  000      0000 245666665432 222    334


Q ss_pred             HHHHHHHHHcCCcEEEEc
Q 045245          212 LRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PILVG  229 (251)
                      ...++.+.+.|+..|+.+
T Consensus       107 f~l~n~~~~~g~~ilits  124 (226)
T PRK09087        107 FHLINSVRQAGTSLLMTS  124 (226)
T ss_pred             HHHHHHHHhCCCeEEEEC
Confidence            566777777776544444

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.30  E-value=0.00026  Score=72.35  Aligned_cols=39  Identities=18%  Similarity=0.171  Sum_probs=34.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC-CceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS-GEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-~~VIS~Ds~  167 (251)
                      +.....+|.|.|||||||||||+.|+..++ ..+|+.|.+
T Consensus        61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             cCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            445668999999999999999999999985 469999996

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.29  E-value=0.00044  Score=63.09  Aligned_cols=83  Identities=18%  Similarity=0.231  Sum_probs=46.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCc--eEecCCcceeccc-ccccCCCCccccCCCCeEEeccCCCCCccCHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGE--AINSNKIQVYKGL-DIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCE  209 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~--VIS~Ds~QvYk~l-sIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e  209 (251)
                      -.-+++.||+|+||||||.-+|++++..  .+|+..++--.++ .+.|      ..+.-+--|+|+..        .|-.
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~------~l~~~~ILFIDEIH--------Rlnk  115 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILT------NLKEGDILFIDEIH--------RLNK  115 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHH------T--TT-EEEECTCC--------C--H
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHH------hcCCCcEEEEechh--------hccH
Confidence            4568999999999999999999999865  3444332211111 1111      11222346677443        2333


Q ss_pred             HHHHHHHHHHHcCCcEEEEc
Q 045245          210 HALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       210 ~A~k~I~eI~~~Gk~PILVG  229 (251)
                      ...+.+-...+.+..-|++|
T Consensus       116 ~~qe~LlpamEd~~idiiiG  135 (233)
T PF05496_consen  116 AQQEILLPAMEDGKIDIIIG  135 (233)
T ss_dssp             HHHHHHHHHHHCSEEEEEBS
T ss_pred             HHHHHHHHHhccCeEEEEec
Confidence            45566777777788877766

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.28  E-value=0.00056  Score=67.59  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=32.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ  168 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q  168 (251)
                      ..++.+|.|+|++|||||||++.|...+.     ..+|+.|.+.
T Consensus       209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            34678999999999999999999977653     4688999973

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.28  E-value=0.00076  Score=55.61  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=26.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~  167 (251)
                      ++++.||+|+||||++..++..+   +  ..++++|.+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~   39 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY   39 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            68899999999999999998865   3  346777864

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.26  E-value=0.0002  Score=61.78  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|+|+|..||||||+++.|++ +|..++++|.+
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i   33 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEI   33 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CCCCEECccHH
Confidence            789999999999999999988 99999999986

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.26  E-value=0.0013  Score=56.69  Aligned_cols=27  Identities=15%  Similarity=0.352  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .....++|.||+|||||+||..++++.
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            445789999999999999999999875

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.26  E-value=0.00025  Score=54.79  Aligned_cols=26  Identities=27%  Similarity=0.506  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+.++|.||+|+|||+++..+++.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999987

>PRK06620 hypothetical protein; Validated

Probab=97.26  E-value=0.0012  Score=58.03  Aligned_cols=30  Identities=20%  Similarity=0.194  Sum_probs=25.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAIN  163 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS  163 (251)
                      +.++|.||+|+|||+|++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            679999999999999999999888765544

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.23  E-value=0.00039  Score=59.30  Aligned_cols=88  Identities=17%  Similarity=0.136  Sum_probs=51.7

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCC----ceEecCCcceecc-------cccccCCC-CccccCCCCeEEeccCCCCC-
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSG----EAINSNKIQVYKG-------LDIATNKV-TASERQGVPHHLLGFVDPEA-  200 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~----~VIS~Ds~QvYk~-------lsIgTakP-~~eEr~gvpHhLVD~~d~~e-  200 (251)
                      ..+++.||||+|||.+|+.||+.+..    .++..|.-+ |.+       ++-...+| ..-....-.--++|+.|--. 
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~-~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~   82 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSE-YSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP   82 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGG-HCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhc-ccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence            57889999999999999999999985    666666543 333       11011111 11111111256777766333 


Q ss_pred             --ccCHHHHHHHHHHHHHHHHHcC
Q 045245          201 --DYPEEEFCEHALRAIDKIIENG  222 (251)
Q Consensus       201 --~fsag~F~e~A~k~I~eI~~~G  222 (251)
                        .....-+-+.+.+.+.++++.|
T Consensus        83 ~~~~~~~v~~~~V~~~LL~~le~g  106 (171)
T PF07724_consen   83 SNSGGADVSGEGVQNSLLQLLEGG  106 (171)
T ss_dssp             TTTTCSHHHHHHHHHHHHHHHHHS
T ss_pred             cccccchhhHHHHHHHHHHHhccc
Confidence              2344555556666666666544

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK13808 adenylate kinase; Provisional

Probab=97.23  E-value=0.00027  Score=67.04  Aligned_cols=33  Identities=12%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|+||+||||||++..|++.|+...|+.|.+
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdl   34 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDM   34 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHH
Confidence            488999999999999999999999999998665

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.22  E-value=0.0015  Score=59.81  Aligned_cols=39  Identities=18%  Similarity=0.207  Sum_probs=31.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~  167 (251)
                      ...++.+|+|+||+||||||++..|+..+     ...++..|.-
T Consensus        30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~   73 (300)
T TIGR00750        30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS   73 (300)
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            34567899999999999999999988765     2457888753

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK14529 adenylate kinase; Provisional

Probab=97.21  E-value=0.00029  Score=63.08  Aligned_cols=31  Identities=16%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      .|+|.||+||||||+|+.|+++++...+|..
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~g   32 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESG   32 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccc
Confidence            4889999999999999999999998888653

>COG0645 Predicted kinase [General function prediction only]

Probab=97.20  E-value=0.0015  Score=57.13  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..+++.|-+||||||+|+.|++.+++..|..|..
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i   35 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI   35 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH
Confidence            5788999999999999999999999999999975

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.18  E-value=0.00039  Score=68.48  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +..|++.||||+|||++|+.||+.++.+.+..|.-
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t   84 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT   84 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence            46799999999999999999999999999998874

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.18  E-value=0.00036  Score=61.59  Aligned_cols=30  Identities=20%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ++|+|+|+||+||||++..|+ +++..+++.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l   30 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIEL   30 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence            368999999999999999999 899888876

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.00086  Score=58.29  Aligned_cols=72  Identities=18%  Similarity=0.322  Sum_probs=46.4

Q ss_pred             EcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHHHHHH
Q 045245          139 MGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKI  218 (251)
Q Consensus       139 sGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~I~eI  218 (251)
                      +|.+||||||++.+||++++++.|-.|.++=-.++.    |.+    .|+|-        .+ =+---|.+....++.+.
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~----KM~----~GiPL--------~D-dDR~pWL~~l~~~~~~~   63 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIE----KMS----AGIPL--------ND-DDRWPWLEALGDAAASL   63 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHH----HHh----CCCCC--------Cc-chhhHHHHHHHHHHHHh
Confidence            589999999999999999999999999986222111    111    12221        11 13345666666666666


Q ss_pred             HHcCCcEEE
Q 045245          219 IENGHLHII  227 (251)
Q Consensus       219 ~~~Gk~PIL  227 (251)
                      .+.|+.+||
T Consensus        64 ~~~~~~~vi   72 (161)
T COG3265          64 AQKNKHVVI   72 (161)
T ss_pred             hcCCCceEE
Confidence            666665554

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.16  E-value=0.00039  Score=60.28  Aligned_cols=30  Identities=23%  Similarity=0.186  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      |...++++.|+|++|||||||+++|...+.
T Consensus         2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          2 NKTMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCCCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            445667999999999999999999997764

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.16  E-value=0.00035  Score=68.17  Aligned_cols=37  Identities=27%  Similarity=0.436  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~  167 (251)
                      .++++|+++||||+||||...+||-++.       ..+|+.|++
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY  244 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY  244 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc
Confidence            3479999999999999999999988774       469999997

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.16  E-value=0.00056  Score=62.79  Aligned_cols=25  Identities=24%  Similarity=0.475  Sum_probs=23.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++|+++|++||||||+|+.||+.+.
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHH
Confidence            5899999999999999999999885

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.16  E-value=0.00037  Score=63.61  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=28.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~  167 (251)
                      ++.|.|++||||||+++.|+..++   ..+++.|.+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence            478999999999999999998874   458999965

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.16  E-value=0.00046  Score=67.89  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=33.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ  168 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q  168 (251)
                      .++-|++.||||+|||++|++||+.++.+.+..|...
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~   82 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK   82 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecce
Confidence            3467999999999999999999999999999998754

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.15  E-value=0.00035  Score=67.11  Aligned_cols=30  Identities=20%  Similarity=0.390  Sum_probs=26.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ..+.++++|.||+|+||||||..|++.++.
T Consensus        75 ~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       75 EERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            345689999999999999999999999863

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.15  E-value=0.00054  Score=57.21  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=29.4

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .++.-+.+.+|++.|+.|+||||+++.+++.++.
T Consensus        15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3444567789999999999999999999999985

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PLN02796 D-glycerate 3-kinase

Probab=97.15  E-value=0.00051  Score=65.67  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=32.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ  168 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q  168 (251)
                      .++.+|+|+||+|||||||++.|...+.     ...|+.|.+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4567899999999999999999998875     3578888874

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.15  E-value=0.00037  Score=60.57  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=28.8

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|+|+|++||||||++..|++ +|..++++|.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i   32 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRL   32 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchH
Confidence            478999999999999998865 79999999987

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=97.14  E-value=0.00037  Score=66.65  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.|+|+|+.||||||+++.|++ +|..+|++|.+
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i   34 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVL   34 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence            5799999999999999999987 89999999986

>PLN02422 dephospho-CoA kinase

Probab=97.10  E-value=0.00046  Score=62.28  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+|+.||||||++..|+ ++|..++++|.+
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~   34 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKV   34 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHH
Confidence            479999999999999999998 689999999987

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=97.10  E-value=0.0012  Score=57.51  Aligned_cols=31  Identities=32%  Similarity=0.368  Sum_probs=27.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      +|+|.|..||||||+++.|++.++.+++..+
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~   31 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEA   31 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeecc
Confidence            4899999999999999999999987777554

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.09  E-value=0.0034  Score=61.23  Aligned_cols=114  Identities=22%  Similarity=0.270  Sum_probs=80.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecc------cc-cccCCCCccccCCCCeEEeccCC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKG------LD-IATNKVTASERQGVPHHLLGFVD  197 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~------ls-IgTakP~~eEr~gvpHhLVD~~d  197 (251)
                      ..+..+++|+||..||||||+.-|+.++.     ..+|.+|-=|=--.      +. +.+--....|..-..++|++-.+
T Consensus        70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~is  149 (398)
T COG1341          70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSIS  149 (398)
T ss_pred             ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccC
Confidence            45668999999999999999999999874     35777765441100      11 11222236777788899999999


Q ss_pred             CCCccCHHHHHHHHHHHHHHHHHcCCcEEE------Ec-ccHHHHHHHHcCCchh
Q 045245          198 PEADYPEEEFCEHALRAIDKIIENGHLHII------VG-GSNTYIEALVEDSIIN  245 (251)
Q Consensus       198 ~~e~fsag~F~e~A~k~I~eI~~~Gk~PIL------VG-GTglYlkaLl~g~~~~  245 (251)
                      |+.  ..+.++..+.+..+...+.-...||      .| +..-|..++++...|+
T Consensus       150 P~~--~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~~li~~ikP~  202 (398)
T COG1341         150 PQG--FPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLELKRALIDAIKPD  202 (398)
T ss_pred             CCC--ChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHHHHHhhcCCC
Confidence            988  5688888888888888776444444      57 5556777777766554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.09  E-value=0.00071  Score=66.21  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~  167 (251)
                      .++.+|.++|++||||||++.+||..+   +  ..++++|.+
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~  139 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF  139 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence            346899999999999999999999755   3  468899985

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13973 thymidylate kinase; Provisional

Probab=97.07  E-value=0.00081  Score=58.33  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++.|+|.|+.||||||+++.|++.+
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l   27 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERL   27 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5899999999999999999999998

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.07  E-value=0.00068  Score=57.51  Aligned_cols=27  Identities=15%  Similarity=0.345  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+..++|.||+|||||++|+.+++..
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAA   62 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            556789999999999999999999875

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.06  E-value=0.00048  Score=59.21  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +|+|+|||||||||++..|+..++
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            789999999999999999988775

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF05729 NACHT: NACHT domain

Probab=97.06  E-value=0.00051  Score=54.23  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=22.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++++|.|++|+|||+++..++..+.
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHH
Confidence            4789999999999999999998763

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.05  E-value=0.00082  Score=60.06  Aligned_cols=30  Identities=20%  Similarity=0.227  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEA  161 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~V  161 (251)
                      .+..++|.||+|+|||++|+.+|++++..+
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            345689999999999999999999987543

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.04  E-value=0.00064  Score=60.93  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      .+..++|.||+|+|||++|+.||+.++.+++
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            3567889999999999999999998886654

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.0024  Score=56.41  Aligned_cols=28  Identities=25%  Similarity=0.462  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +....|+|+|++||||||++.++++.+.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            3457899999999999999999998774

>PRK10867 signal recognition particle protein; Provisional

Probab=97.03  E-value=0.0019  Score=63.21  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds~  167 (251)
                      .++.+|+++||+||||||++.+||..+    +  ..++.+|.+
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~  140 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY  140 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            456899999999999999888887643    3  458889974

>PRK04195 replication factor C large subunit; Provisional

Probab=97.01  E-value=0.00085  Score=65.16  Aligned_cols=33  Identities=36%  Similarity=0.508  Sum_probs=29.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ++.++|+||+|+||||+|..||++++..++..+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ieln   71 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELN   71 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence            678999999999999999999999997766554

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=97.00  E-value=0.00021  Score=59.06  Aligned_cols=71  Identities=24%  Similarity=0.333  Sum_probs=43.8

Q ss_pred             CccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHHHHHHHHc
Q 045245          142 TATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIEN  221 (251)
Q Consensus       142 TGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~I~eI~~~  221 (251)
                      +||||||+++.||++++.+.+..|..-              ++..+     .+..++........|.+.-.+.+.++...
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i--------------~~~~g-----~si~~i~~~~G~~~fr~~E~~~l~~l~~~   61 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEI--------------EERTG-----MSISEIFAEEGEEAFRELESEALRELLKE   61 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHH--------------HHHHT-----SHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHH--------------HHHhC-----CcHHHHHHcCChHHHHHHHHHHHHHHhcc
Confidence            599999999999999999999998752              11111     11111111222445555556778887776


Q ss_pred             CCcEEEEccc
Q 045245          222 GHLHIIVGGS  231 (251)
Q Consensus       222 Gk~PILVGGT  231 (251)
                      ...+|-+||.
T Consensus        62 ~~~VIa~GGG   71 (158)
T PF01202_consen   62 NNCVIACGGG   71 (158)
T ss_dssp             SSEEEEE-TT
T ss_pred             CcEEEeCCCC
Confidence            6555557554

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.00  E-value=0.00075  Score=65.06  Aligned_cols=37  Identities=30%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC---------CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS---------GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~---------~~VIS~Ds~  167 (251)
                      .++.+++++||||+||||.+.+||..+.         ..++++|.+
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~  217 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY  217 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence            4567999999999999999999997652         458999985

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.99  E-value=0.00059  Score=55.24  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=19.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...+++.++|.|++|+|||+|.+++.+...
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            335568999999999999999998887664

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.99  E-value=0.00072  Score=65.46  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..-++|.||||+|||++|+.||+.++.+.+..|.-
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~  142 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADAT  142 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchh
Confidence            35689999999999999999999999877766654

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.99  E-value=0.0025  Score=56.03  Aligned_cols=96  Identities=15%  Similarity=0.210  Sum_probs=58.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcceecccccc--cCCC--CccccCCCCeEEeccCCCCCcc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQVYKGLDIA--TNKV--TASERQGVPHHLLGFVDPEADY  202 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~QvYk~lsIg--TakP--~~eEr~gvpHhLVD~~d~~e~f  202 (251)
                      ....++|.||+|+|||.|..+++.++     +..++..+.-+..+++.-.  ..+.  =.++....+--++|-.+.-.  
T Consensus        33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~--  110 (219)
T PF00308_consen   33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLA--  110 (219)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGT--
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhc--
Confidence            34578999999999999999998754     2334444332222221100  0000  01345566777887664432  


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCcEEEEc
Q 045245          203 PEEEFCEHALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       203 sag~F~e~A~k~I~eI~~~Gk~PILVG  229 (251)
                      ....+.+.....++...++|+..|+.+
T Consensus       111 ~~~~~q~~lf~l~n~~~~~~k~li~ts  137 (219)
T PF00308_consen  111 GKQRTQEELFHLFNRLIESGKQLILTS  137 (219)
T ss_dssp             THHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            345567777788899989988777765

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.99  E-value=0.00083  Score=66.95  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAIN  163 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS  163 (251)
                      ...++++++||+|+||||.++.||++++..++.
T Consensus        43 ~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   43 SPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            445799999999999999999999999865554

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=96.97  E-value=0.00062  Score=71.62  Aligned_cols=39  Identities=18%  Similarity=0.432  Sum_probs=35.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL  173 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l  173 (251)
                      ..+|+|.||+||||||+|+.||++++...++.+.+  ||.+
T Consensus        34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~--yRa~   72 (863)
T PRK12269         34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSF--YRAF   72 (863)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH--HHHH
Confidence            37899999999999999999999999999998886  6654

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.97  E-value=0.00073  Score=57.22  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+..++|+|||||||||+++.|....+
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4568999999999999999999988765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.95  E-value=0.0009  Score=63.59  Aligned_cols=36  Identities=28%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      +.++-++|.||+|+|||++|+.+|++.+...+..+.
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~  198 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG  198 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence            556779999999999999999999999876665543

>PRK05642 DNA replication initiation factor; Validated

Probab=96.94  E-value=0.0017  Score=57.41  Aligned_cols=89  Identities=11%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF  207 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F  207 (251)
                      ...++|.||+|+|||.|+.+++.++   +  ...++++.+.  ...     ..-.+.....+.-++|..+...  ...++
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~--~~~-----~~~~~~~~~~d~LiiDDi~~~~--~~~~~  115 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL--DRG-----PELLDNLEQYELVCLDDLDVIA--GKADW  115 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH--hhh-----HHHHHhhhhCCEEEEechhhhc--CChHH
Confidence            4678999999999999999998643   2  2344443321  000     0001123344566677665332  11344


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEccc
Q 045245          208 CEHALRAIDKIIENGHLHIIVGGS  231 (251)
Q Consensus       208 ~e~A~k~I~eI~~~Gk~PILVGGT  231 (251)
                      .+.....++...++|+. ||++++
T Consensus       116 ~~~Lf~l~n~~~~~g~~-ilits~  138 (234)
T PRK05642        116 EEALFHLFNRLRDSGRR-LLLAAS  138 (234)
T ss_pred             HHHHHHHHHHHHhcCCE-EEEeCC
Confidence            55566777777666664 555554

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.94  E-value=0.00076  Score=61.48  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc----C---CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF----S---GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~---~~VIS~Ds~  167 (251)
                      .++.+++|+|||||||||++.+||..+    +   ..+|..|.+
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~  235 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY  235 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence            457899999999999999999998754    2   347888874

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.93  E-value=0.00086  Score=57.42  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++.+|.|+|.+||||||||++|.+++.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~   27 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLF   27 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999873

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.93  E-value=0.0011  Score=61.66  Aligned_cols=35  Identities=29%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..++-++|.||+|+|||++|+.++++++...+..+
T Consensus       154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~  188 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV  188 (364)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence            34567999999999999999999999987766554

Many proteins may score above the trusted cutoff because an internal

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.93  E-value=0.00055  Score=67.13  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=25.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      .-.++.||+|+||||||+.||+..+..+.
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~   77 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFE   77 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceE
Confidence            46789999999999999999999986543

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.93  E-value=0.0056  Score=55.50  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++|+|||||||||+...+....+
T Consensus        80 ~GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence            45899999999999999999987764

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.92  E-value=0.00094  Score=64.28  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      .-.+.|+|+|++|||||||+.+|++.+|...+
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            34578999999999999999999999986543

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.92  E-value=0.0011  Score=60.94  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      ..+..++|.||+|+|||++|+.+|+.++..+.
T Consensus        49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            34567899999999999999999999986543

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.92  E-value=0.00089  Score=58.25  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+..++|.||+|+||||+++.+++.+.
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            355899999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.91  E-value=0.00097  Score=62.34  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      .++.+++++||+|+||||++..||..+.     ..++.+|.+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            4568999999999999999999988662     346777874

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.90  E-value=0.0011  Score=64.42  Aligned_cols=41  Identities=20%  Similarity=0.363  Sum_probs=27.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCccee
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKIQVY  170 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~QvY  170 (251)
                      ...++.|+|.||||+|||+||..+|++++  .+.++...-.+|
T Consensus        47 K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy   89 (398)
T PF06068_consen   47 KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY   89 (398)
T ss_dssp             --TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred             cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence            34579999999999999999999999997  344444333444

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.90  E-value=0.001  Score=54.99  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=28.5

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      +++.-+.+.+|++.|+-|||||||++.+++.++.
T Consensus         8 l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen    8 LAQILKPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             HHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             HHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4445577899999999999999999999999975

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.90  E-value=0.00088  Score=58.72  Aligned_cols=32  Identities=31%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      .+-|+|.|.||+||||++.+||++++.+-|+.
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i   38 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI   38 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence            35689999999999999999999999988876

>TIGR00959 ffh signal recognition particle protein

Probab=96.89  E-value=0.0037  Score=61.05  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds~  167 (251)
                      .++.+++++||+||||||++..||..+    +  ..++.+|.+
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~  139 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY  139 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence            346799999999999999999988763    2  458888874

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=96.88  E-value=0.0044  Score=55.41  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=28.4

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++..++.+|-++|.|||||||||.+|.+++-
T Consensus        16 ~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~   48 (197)
T COG0529          16 EALKGQKGAVIWFTGLSGSGKSTIANALEEKLF   48 (197)
T ss_pred             HHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            345667778999999999999999999999873

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=96.88  E-value=0.00083  Score=56.21  Aligned_cols=28  Identities=36%  Similarity=0.558  Sum_probs=23.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      .|+|.|+.||||||+++.|++.++..++
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~   28 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVV   28 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence            4789999999999999999998754333

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.88  E-value=0.0011  Score=65.67  Aligned_cols=42  Identities=12%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCccee
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVY  170 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvY  170 (251)
                      ..+.++-|++.||+|+|||.+|+.+|.+.+.+++..|.-.++
T Consensus       255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~  296 (489)
T CHL00195        255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF  296 (489)
T ss_pred             CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc
Confidence            346678899999999999999999999999988887754333

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.87  E-value=0.00069  Score=53.17  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|+|++|||||||.+.|+....
T Consensus         8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen    8 IKPGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EcCCCEEEEEccCCCccccceeeeccccc
Confidence            36678999999999999999999988764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PTZ00202 tuzin; Provisional

Probab=96.87  E-value=0.0014  Score=65.76  Aligned_cols=80  Identities=11%  Similarity=0.138  Sum_probs=53.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHAL  212 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~  212 (251)
                      +++++|.|++|+||||+++.+....+..       |+|-+.. +     ++|.   -..+++.+........++..+...
T Consensus       286 privvLtG~~G~GKTTLlR~~~~~l~~~-------qL~vNpr-g-----~eEl---Lr~LL~ALGV~p~~~k~dLLrqIq  349 (550)
T PTZ00202        286 PRIVVFTGFRGCGKSSLCRSAVRKEGMP-------AVFVDVR-G-----TEDT---LRSVVKALGVPNVEACGDLLDFIS  349 (550)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcCCce-------EEEECCC-C-----HHHH---HHHHHHHcCCCCcccHHHHHHHHH
Confidence            4699999999999999999999888733       4444443 2     1221   112344444444455566666677


Q ss_pred             HHHHHHHHc-CCcEEEE
Q 045245          213 RAIDKIIEN-GHLHIIV  228 (251)
Q Consensus       213 k~I~eI~~~-Gk~PILV  228 (251)
                      +.+.+.... |+.|+|+
T Consensus       350 eaLl~~~~e~GrtPVLI  366 (550)
T PTZ00202        350 EACRRAKKMNGETPLLV  366 (550)
T ss_pred             HHHHHHHHhCCCCEEEE
Confidence            777776666 9999984

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.001  Score=64.32  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=29.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      -|++.||||||||-||+.||+.++.+.-=+|+-
T Consensus        99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT  131 (408)
T COG1219          99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADAT  131 (408)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhCCCeeecccc
Confidence            488999999999999999999999887777764

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=96.87  E-value=0.0021  Score=54.57  Aligned_cols=30  Identities=10%  Similarity=0.150  Sum_probs=24.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      +|.|++..|||++++|++||+++|.+.+.-
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~   30 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR   30 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH
Confidence            689999999999999999999999888754

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.85  E-value=0.0035  Score=58.61  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++|+|||||||||+...|....+
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            47899999999999999999988664

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.84  E-value=0.0012  Score=64.13  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      +..++|.||||+|||++|+.||+.++.+....|.
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da  149 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADA  149 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence            3579999999999999999999999876655554

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.84  E-value=0.0013  Score=60.11  Aligned_cols=37  Identities=24%  Similarity=0.326  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~  167 (251)
                      .++++++++||+|+||||++.+||..+   +  ..++.+|.+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~  111 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF  111 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            445789999999999999999998766   2  347888863

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=96.84  E-value=0.0025  Score=61.12  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +...++|+|||||||||+...|.+.++
T Consensus       148 ~~GlilI~G~TGSGKTT~l~al~~~i~  174 (372)
T TIGR02525       148 AAGLGLICGETGSGKSTLAASIYQHCG  174 (372)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345789999999999999999988763

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.83  E-value=0.00086  Score=52.21  Aligned_cols=23  Identities=39%  Similarity=0.810  Sum_probs=20.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++|.||+|+|||+++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998776

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=96.82  E-value=0.001  Score=66.71  Aligned_cols=40  Identities=15%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC------ceEecCCc
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSG------EAINSNKI  167 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~------~VIS~Ds~  167 (251)
                      ....++.+|+|+|++||||||+|+.|+++++.      .++..|.+
T Consensus       387 ~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v  432 (568)
T PRK05537        387 PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV  432 (568)
T ss_pred             cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence            44455679999999999999999999999985      55555543

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.81  E-value=0.0011  Score=56.53  Aligned_cols=39  Identities=18%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKG  172 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~  172 (251)
                      ++-++|.||+|+||||+|..|.++ +..+++=|...+.+.
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v~v~~~   52 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-GHRLVADDRVVVKRE   52 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEEEEEEE
Confidence            467999999999999999999875 567777776665543

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PHA00729 NTP-binding motif containing protein

Probab=96.81  E-value=0.00088  Score=60.59  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=23.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..|+|+|+||+|||+||.+|+++++
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999875

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=96.80  E-value=0.0029  Score=59.30  Aligned_cols=69  Identities=12%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCcc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADY  202 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~f  202 (251)
                      ...+-+|.|.|+.|+||||+|+.|+..+.       ..+|..|.+..+...           ++  ++.+.++..+.+.|
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~-----------L~--~~glm~rKGfPeSy  145 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAV-----------LD--ERGLMARKGFPESY  145 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhH-----------hh--hccccccCCCCccc
Confidence            45668899999999999999999988763       468999998643321           11  45688889999999


Q ss_pred             CHHHHHHHH
Q 045245          203 PEEEFCEHA  211 (251)
Q Consensus       203 sag~F~e~A  211 (251)
                      ++..|.+-.
T Consensus       146 D~~~ll~fl  154 (283)
T COG1072         146 DVAALLRFL  154 (283)
T ss_pred             cHHHHHHHH
Confidence            988887644

>PRK04296 thymidine kinase; Provisional

Probab=96.79  E-value=0.008  Score=51.50  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+++++||+|+||||++..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999998876

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.78  E-value=0.0014  Score=64.13  Aligned_cols=43  Identities=14%  Similarity=0.058  Sum_probs=36.5

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceec
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYK  171 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk  171 (251)
                      +...|+.++|.||+|+|||.+|+.+|++++...|..+.=.++.
T Consensus       144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s  186 (413)
T PLN00020        144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES  186 (413)
T ss_pred             CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence            4577899999999999999999999999998877776655443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.78  E-value=0.0047  Score=58.49  Aligned_cols=38  Identities=13%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ  168 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q  168 (251)
                      .++.+|.|+||+|||||||+..|...+.     ..+++.|--.
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s   96 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS   96 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence            5678999999999999999999877653     4688888644

>PRK06851 hypothetical protein; Provisional

Probab=96.77  E-value=0.0033  Score=60.49  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++++|.|++|+||||+.+++++.+
T Consensus        28 ~~~~~~il~G~pGtGKStl~~~i~~~~   54 (367)
T PRK06851         28 GANRIFILKGGPGTGKSTLMKKIGEEF   54 (367)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            345899999999999999999998877

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.77  E-value=0.0013  Score=49.92  Aligned_cols=24  Identities=29%  Similarity=0.277  Sum_probs=20.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .|+|.|++|||||||.+.|.....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCC
Confidence            489999999999999999997654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04163 Era Era subfamily

Probab=96.76  E-value=0.0013  Score=50.65  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHh
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ...|++.|++|+|||||...+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999999754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.0027  Score=64.85  Aligned_cols=99  Identities=14%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCcc-----ccCCCCe-EEeccCCCCC-c--
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTAS-----ERQGVPH-HLLGFVDPEA-D--  201 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~e-----Er~gvpH-hLVD~~d~~e-~--  201 (251)
                      .-||=|+++||+|+|||-||+++|-+-+.+...+-.-+ |.++=+|-++-+.-     .+...|. .|+|+.|.-. .  
T Consensus       335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE-FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~  413 (752)
T KOG0734|consen  335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE-FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRN  413 (752)
T ss_pred             cCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc-hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCC
Confidence            44678999999999999999999999887766653222 34443443333322     2234455 7899887432 2  


Q ss_pred             cCHHHHHHHHHHHHHHHHH------cCCcEEEEcccHH
Q 045245          202 YPEEEFCEHALRAIDKIIE------NGHLHIIVGGSNT  233 (251)
Q Consensus       202 fsag~F~e~A~k~I~eI~~------~Gk~PILVGGTgl  233 (251)
                      =+..+|.   ++.|++++-      ++...|+.|+|++
T Consensus       414 ~~~~~y~---kqTlNQLLvEmDGF~qNeGiIvigATNf  448 (752)
T KOG0734|consen  414 PSDQHYA---KQTLNQLLVEMDGFKQNEGIIVIGATNF  448 (752)
T ss_pred             ccHHHHH---HHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence            2233354   444554432      5566777888875

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.75  E-value=0.0013  Score=56.00  Aligned_cols=29  Identities=24%  Similarity=0.250  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||++.|+-.+.
T Consensus        27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            36778999999999999999999987653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.74  E-value=0.0098  Score=53.38  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ++.++|.|++|+||||+|+.|+.  ...+++.|.
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~   43 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM   43 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence            57799999999999999999963  245666665

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.73  E-value=0.0013  Score=58.25  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .....++|+|||||||||+...|.+..+.
T Consensus       125 ~~~~~ili~G~tGSGKTT~l~all~~i~~  153 (270)
T PF00437_consen  125 RGRGNILISGPTGSGKTTLLNALLEEIPP  153 (270)
T ss_dssp             HTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred             ccceEEEEECCCccccchHHHHHhhhccc
Confidence            45689999999999999999999998753

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.73  E-value=0.0013  Score=64.73  Aligned_cols=37  Identities=32%  Similarity=0.517  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds~  167 (251)
                      .++++++|+|||||||||++.+||..+    +  ..++.+|.+
T Consensus       221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~  263 (432)
T PRK12724        221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY  263 (432)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence            346789999999999999999999754    2  457888874

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.0011  Score=64.13  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      -.++|++.||+|+|||+|+++||+++.
T Consensus       176 ~NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  176 WNRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            357999999999999999999999985

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.72  E-value=0.0014  Score=55.53  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|+|||||++.|+-.+.
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36778999999999999999999987653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.72  E-value=0.0018  Score=63.01  Aligned_cols=36  Identities=25%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ..++-+++.||+|+|||++|+.+|...+..++..+.
T Consensus        86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~  121 (495)
T TIGR01241        86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG  121 (495)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence            445669999999999999999999999888776653

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.71  E-value=0.0014  Score=55.86  Aligned_cols=29  Identities=21%  Similarity=0.288  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        26 ITKGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999997653

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.70  E-value=0.0017  Score=63.97  Aligned_cols=37  Identities=22%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      .++++|+|+||+|+||||++.+||..+-     ..++.+|.+
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~  280 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS  280 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence            3457999999999999999999987652     458899986

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0021  Score=66.75  Aligned_cols=54  Identities=24%  Similarity=0.312  Sum_probs=36.7

Q ss_pred             cccCccchhhhccchhhhhh-ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245          108 DHRGKSNFISKNLVYTRVIT-MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEA  161 (251)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~-~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~V  161 (251)
                      ||-|=.-+=++++.+--+.. ++.-++++++++||+|+|||+|++.+|+.++-+.
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf  378 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF  378 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence            44443333244444333322 4556678999999999999999999999998543

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.69  E-value=0.0015  Score=55.35  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          24 ISAGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36778999999999999999999997653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.68  E-value=0.0016  Score=54.64  Aligned_cols=29  Identities=24%  Similarity=0.405  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-...
T Consensus        15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        15 AERGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999987653

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.67  E-value=0.0016  Score=55.35  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+..+.
T Consensus        25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        25 IRKGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36678999999999999999999987653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.67  E-value=0.0016  Score=55.26  Aligned_cols=29  Identities=17%  Similarity=0.153  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999997653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13245 AAA_19: Part of AAA domain

Probab=96.67  E-value=0.0019  Score=48.67  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=19.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...+++|.||+|||||+++..++..+
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45678899999999996555554433

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.67  E-value=0.0023  Score=61.65  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      .+.++-++|.||+|+|||++|+.+|...+...+...
T Consensus       176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~  211 (398)
T PTZ00454        176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV  211 (398)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence            356788999999999999999999999987766543

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.67  E-value=0.002  Score=60.11  Aligned_cols=31  Identities=32%  Similarity=0.412  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAIN  163 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS  163 (251)
                      .+.|+|+|++|+|||||++.|++.++...+.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            4689999999999999999999998876644

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.66  E-value=0.0018  Score=61.56  Aligned_cols=31  Identities=23%  Similarity=0.286  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      ..+.|+|.||+|+|||++++.||++++.+++
T Consensus        63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             cCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            3567999999999999999999999997655

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.66  E-value=0.002  Score=52.18  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLA  154 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LA  154 (251)
                      ..+..++|.||||||||||++.+.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            445789999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.66  E-value=0.0017  Score=62.53  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=31.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc----C---CceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF----S---GEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l----~---~~VIS~Ds~  167 (251)
                      ..++.+++++||||+||||++.+||..+    +   ..++..|.+
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~  178 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY  178 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            3567899999999999999999998753    3   347888886

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.65  E-value=0.0017  Score=56.08  Aligned_cols=28  Identities=25%  Similarity=0.292  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-.+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3677899999999999999999998654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.65  E-value=0.0017  Score=55.26  Aligned_cols=29  Identities=21%  Similarity=0.182  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999987553

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.65  E-value=0.0017  Score=56.25  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-.+
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        25 INPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4677899999999999999999998755

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PHA02624 large T antigen; Provisional

Probab=96.64  E-value=0.0023  Score=65.55  Aligned_cols=40  Identities=28%  Similarity=0.402  Sum_probs=36.0

Q ss_pred             hhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          125 VITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       125 ~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ...++.|+++.+++.||+|||||+++..|++.+++.++|+
T Consensus       423 ~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        423 LIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            3557889999999999999999999999999998887776

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=96.64  E-value=0.0062  Score=57.11  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.++|+|+|||||||++++|+...
T Consensus       147 ~~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        147 AHRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            56789999999999999999999864

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.64  E-value=0.0023  Score=57.50  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=26.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      ..+..+++.||+|+|||++|+.++++++..++
T Consensus        41 ~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~   72 (316)
T PHA02544         41 RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL   72 (316)
T ss_pred             CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence            44578888999999999999999998875443

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.64  E-value=0.0016  Score=55.47  Aligned_cols=28  Identities=14%  Similarity=0.255  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-.+
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          22 VKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3677899999999999999999998765

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.64  E-value=0.0016  Score=55.42  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          23 VPEGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46778999999999999999999987653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.64  E-value=0.0017  Score=56.15  Aligned_cols=29  Identities=14%  Similarity=0.312  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46778999999999999999999997653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.63  E-value=0.0017  Score=56.02  Aligned_cols=30  Identities=17%  Similarity=0.175  Sum_probs=26.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|||||||++.|+..+.
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          27 SVPKGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346778999999999999999999997764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.63  E-value=0.0024  Score=62.47  Aligned_cols=36  Identities=28%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ...++-++|.||+|+|||++|+.+|.+++...+..+
T Consensus       214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~  249 (438)
T PTZ00361        214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV  249 (438)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence            345677999999999999999999999987666543

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.63  E-value=0.0015  Score=62.05  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+.|+|+|||||||||+++.|....+
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccC
Confidence            457899999999999999999998876

>cd01895 EngA2 EngA2 subfamily

Probab=96.63  E-value=0.016  Score=45.32  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +..|+|+|++|+|||||..+|....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~   26 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEE   26 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcc
Confidence            4679999999999999999997653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.62  E-value=0.0017  Score=58.89  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=23.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ..+++..++|+||||||||||..-|+-
T Consensus        27 ~i~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          27 EIEAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            447788999999999999999998875

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.62  E-value=0.0014  Score=58.71  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=23.2

Q ss_pred             EEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          138 VMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       138 IsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      |+||+||||||++..+.+-+.     ..+||.|.-
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa   35 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA   35 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence            689999999999999998765     358888864

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.62  E-value=0.0014  Score=51.09  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=20.8

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcC
Q 045245          136 VFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      |.|.||+|+|||++|..|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999998775

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.62  E-value=0.0018  Score=54.92  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-...
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          23 LYAGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36678999999999999999999987653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.61  E-value=0.0018  Score=61.58  Aligned_cols=27  Identities=30%  Similarity=0.549  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++...|+|+|||||||||++..|.+.+
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999999876

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.61  E-value=0.0019  Score=55.50  Aligned_cols=28  Identities=21%  Similarity=0.241  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3677899999999999999999999776

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.61  E-value=0.0019  Score=54.70  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-.+.
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999997653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd04155 Arl3 Arl3 subfamily

Probab=96.61  E-value=0.0022  Score=51.55  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..+...++|.||+|||||||...|...
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            345678999999999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.002  Score=62.78  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ++.-.||-|+.+||||+|||.+|++||+-.+++.|-.
T Consensus        45 r~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220          45 RDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             hhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            4556678999999999999999999999998877654

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.60  E-value=0.0064  Score=63.79  Aligned_cols=76  Identities=17%  Similarity=0.191  Sum_probs=43.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCC-CccCHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPE-ADYPEEEFCEHA  211 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~-e~fsag~F~e~A  211 (251)
                      ..-++++||+|+|||+++..||+.+....+.                   ....+.+...+|.-.+. ..-..++|.+..
T Consensus       208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~-------------------~~l~~~~i~~l~l~~l~ag~~~~ge~e~~l  268 (852)
T TIGR03345       208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVP-------------------PALRNVRLLSLDLGLLQAGASVKGEFENRL  268 (852)
T ss_pred             cCceeEECCCCCCHHHHHHHHHHHHhhCCCC-------------------ccccCCeEEEeehhhhhcccccchHHHHHH
Confidence            3456799999999999999999987432111                   11111122233322222 112357777777


Q ss_pred             HHHHHHHHHcCCcEEE
Q 045245          212 LRAIDKIIENGHLHII  227 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PIL  227 (251)
                      ++.++++.+.+..+||
T Consensus       269 k~ii~e~~~~~~~~IL  284 (852)
T TIGR03345       269 KSVIDEVKASPQPIIL  284 (852)
T ss_pred             HHHHHHHHhcCCCeEE
Confidence            7777777554444444

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.60  E-value=0.0016  Score=65.40  Aligned_cols=40  Identities=13%  Similarity=0.243  Sum_probs=33.4

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      ...+++++|+++|.+||||||+|+.|++++.     ...++.|.+
T Consensus       455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~  499 (632)
T PRK05506        455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNV  499 (632)
T ss_pred             HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh
Confidence            5556789999999999999999999999973     356777775

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.60  E-value=0.0017  Score=55.14  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHh
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +|.|.++||+|+|||||+++|-..
T Consensus         1 MkrimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    1 MKRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             CceEEEECCCCCCHHHHHHHHcCC
Confidence            368999999999999999999764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.60  E-value=0.0088  Score=54.27  Aligned_cols=30  Identities=20%  Similarity=0.262  Sum_probs=26.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .-++..++|.||+|+|||||++.+++..+.
T Consensus        13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            356789999999999999999999987754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.59  E-value=0.0026  Score=60.61  Aligned_cols=32  Identities=22%  Similarity=0.132  Sum_probs=26.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ...++|.||+|+||||+|+.+++..+...+..
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            34688899999999999999999987655544

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.59  E-value=0.002  Score=54.70  Aligned_cols=29  Identities=21%  Similarity=0.193  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++..++|.||+|||||||++.|+-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          23 IADGEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999997653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.59  E-value=0.0018  Score=55.45  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|||||||++.|+-..
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          27 VEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3677899999999999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.59  E-value=0.002  Score=55.03  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-.+.
T Consensus        28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999987654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.58  E-value=0.0042  Score=56.29  Aligned_cols=67  Identities=9%  Similarity=0.172  Sum_probs=39.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccc--cCCCC----ccccCCCCeEEeccCCCCC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIA--TNKVT----ASERQGVPHHLLGFVDPEA  200 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIg--TakP~----~eEr~gvpHhLVD~~d~~e  200 (251)
                      ..+++.|++|+|||+|+.+++..+   +..++-.+.-.+...+...  .+..+    .++...++.-++|......
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~  175 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT  175 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence            479999999999999999999877   3333333222222211110  11111    1234567788888776543

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.57  E-value=0.0022  Score=57.43  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=22.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +.++|.||+|+|||++|+.+++.+.
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3688999999999999999999874

>PRK08116 hypothetical protein; Validated

Probab=96.57  E-value=0.0071  Score=54.97  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+..++|.|++|+|||.||..+++.+
T Consensus       113 ~~~gl~l~G~~GtGKThLa~aia~~l  138 (268)
T PRK08116        113 ENVGLLLWGSVGTGKTYLAACIANEL  138 (268)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34569999999999999999999875

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.57  E-value=0.0026  Score=55.61  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ....++|+|.|++|+|||+||..+++.
T Consensus        16 ~~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   16 SNEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCCeEEEEEEcCCcCCcceeeeecccc
Confidence            367799999999999999999999977

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.56  E-value=0.0021  Score=54.84  Aligned_cols=29  Identities=21%  Similarity=0.211  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          25 VYKGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46778999999999999999999997653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=96.56  E-value=0.0029  Score=56.18  Aligned_cols=93  Identities=18%  Similarity=0.276  Sum_probs=53.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCc--eEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC--------
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE--AINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA--------  200 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~--VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e--------  200 (251)
                      ++++.|.++||||+||-||.......+...  +.-+      +  .+.|+....   .+-+|.-++..+|.+        
T Consensus         3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fv------r--RvITRpa~a---g~EdH~avs~~eF~~~a~~g~FA   71 (192)
T COG3709           3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFV------R--RVITRPADA---GGEDHDALSEAEFNTRAGQGAFA   71 (192)
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHhccCCceEEE------E--EEecccCCC---CcccccccCHHHHHHHhhcCcee
Confidence            357899999999999999998888877532  1111      1  234544443   234565555444433        


Q ss_pred             -ccCHHHHHHHHHHHHHHHHHcCCcEEEEcccHHHH
Q 045245          201 -DYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYI  235 (251)
Q Consensus       201 -~fsag~F~e~A~k~I~eI~~~Gk~PILVGGTglYl  235 (251)
                       .|.+.......=..|.+-+++|.+ +|+-||--||
T Consensus        72 lsWqAhGL~Ygip~eId~wl~~G~v-vl~NgSRa~L  106 (192)
T COG3709          72 LSWQAHGLSYGIPAEIDLWLAAGDV-VLVNGSRAVL  106 (192)
T ss_pred             EEehhcCccccCchhHHHHHhCCCE-EEEeccHhhh
Confidence             111111111112567777776665 5666676665

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.56  E-value=0.0046  Score=58.34  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++|.||+|+|||+|++++++++
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l  160 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEI  160 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4679999999999999999998865

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK06921 hypothetical protein; Provisional

Probab=96.55  E-value=0.0049  Score=56.04  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ....+++.||+|+|||.||.++++++
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l  141 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANEL  141 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            35789999999999999999998865

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.55  E-value=0.0019  Score=59.19  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=22.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLA  154 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LA  154 (251)
                      ...++-+++|+||||||||||.+-|-
T Consensus        24 ~v~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          24 SVEKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             eEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            34677899999999999999999885

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.54  E-value=0.0023  Score=53.51  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|+|||||++.|+..+.
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36678999999999999999999986553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.54  E-value=0.0028  Score=46.97  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++..+|+||+|||||||..++.--+
T Consensus        23 g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999998876543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.54  E-value=0.0023  Score=54.89  Aligned_cols=29  Identities=17%  Similarity=0.263  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35678999999999999999999997653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.53  E-value=0.002  Score=55.49  Aligned_cols=28  Identities=18%  Similarity=0.201  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-.+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            3667899999999999999999998755

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.003  Score=60.98  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +...++.+++.||+|+|||.||+++|...+..+++.|.-
T Consensus       272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~  310 (494)
T COG0464         272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS  310 (494)
T ss_pred             CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence            456677999999999999999999999999888887654

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.53  E-value=0.0034  Score=44.77  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=27.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQ  168 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~Q  168 (251)
                      ++++.|..|+||||++..|+..+   +..++-.|.+.
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d~i   37 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDYV   37 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECCEE
Confidence            36889999999999999999887   55677777433

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.53  E-value=0.0022  Score=55.74  Aligned_cols=29  Identities=24%  Similarity=0.241  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          25 IPSGELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999987653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.53  E-value=0.0026  Score=62.15  Aligned_cols=38  Identities=18%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQ  168 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~Q  168 (251)
                      ..+++++|+||+|+||||++.+||..+     ...+|.+|.+.
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR  246 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR  246 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence            457899999999999999999998755     24589999874

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.52  E-value=0.0022  Score=59.31  Aligned_cols=26  Identities=35%  Similarity=0.549  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+.++|+|||||||||+++.|.+..
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34678999999999999999999876

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.52  E-value=0.0023  Score=53.93  Aligned_cols=29  Identities=21%  Similarity=0.326  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|+|||||.+.|+-.+.
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        21 IEKGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35678999999999999999999997653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.52  E-value=0.0023  Score=54.97  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|+|||||++.|+-.+.
T Consensus        33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         33 VKRGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            36778999999999999999999997653

>CHL00181 cbbX CbbX; Provisional

Probab=96.51  E-value=0.0025  Score=58.50  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +..+++.||||+|||++|+.+++.+
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999875

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.51  E-value=0.0023  Score=55.39  Aligned_cols=29  Identities=17%  Similarity=0.251  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35678999999999999999999987653

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.51  E-value=0.0021  Score=54.58  Aligned_cols=26  Identities=27%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++ +++|.||+|||||||++.|+-.+
T Consensus        24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          24 GPG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            456 99999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.51  E-value=0.0024  Score=55.45  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-..
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4677899999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.50  E-value=0.0025  Score=53.15  Aligned_cols=30  Identities=17%  Similarity=0.318  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|+|||||++.|+-...
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            346778999999999999999999987654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.50  E-value=0.0024  Score=54.55  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|+|||||.+.|+-.+.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346778999999999999999999997653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.50  E-value=0.012  Score=54.74  Aligned_cols=96  Identities=14%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEE  205 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag  205 (251)
                      .+..+|.|+||+|+|||||..+|.+.+-     .-|+..|.-.-+.+=.+.-.+.+-.+...-|--|+--..-..  +.+
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG--~lG  104 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRG--SLG  104 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---S--SHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCC--CCC
Confidence            4567999999999999999999988762     458888875444444444344443333322333333222222  355


Q ss_pred             HHHHHHHHHHHHHHHcCCcEEEE
Q 045245          206 EFCEHALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       206 ~F~e~A~k~I~eI~~~Gk~PILV  228 (251)
                      ---....+++.-+-..|-..||+
T Consensus       105 Gls~~t~~~v~ll~aaG~D~Iii  127 (266)
T PF03308_consen  105 GLSRATRDAVRLLDAAGFDVIII  127 (266)
T ss_dssp             HHHHHHHHHHHHHHHTT-SEEEE
T ss_pred             CccHhHHHHHHHHHHcCCCEEEE
Confidence            55555566666565678888883

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.50  E-value=0.0024  Score=54.97  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+-..
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3667899999999999999999998754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14974 cell division protein FtsY; Provisional

Probab=96.49  E-value=0.0026  Score=60.28  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~  167 (251)
                      .++.+|+++||+|+||||++.+||..+   +  ..++.+|.+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~  179 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF  179 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence            346899999999999999888888654   2  346777854

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.49  E-value=0.0025  Score=54.00  Aligned_cols=29  Identities=17%  Similarity=0.146  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|+|||||.+.|+-...
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          23 VKKGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            36778999999999999999999987543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.48  E-value=0.0031  Score=56.73  Aligned_cols=53  Identities=26%  Similarity=0.337  Sum_probs=38.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcce-ecccccccCCCCccccCCCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQV-YKGLDIATNKVTASERQGVP  189 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Qv-Yk~lsIgTakP~~eEr~gvp  189 (251)
                      .++-.++|.||||+|||||.+.+|.     ++|.|+=.+ |++-++.|.+|.. -|..|.
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~-----Lisp~~G~l~f~Ge~vs~~~pea-~Rq~Vs   80 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVAS-----LISPTSGTLLFEGEDVSTLKPEA-YRQQVS   80 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHh-----ccCCCCceEEEcCccccccChHH-HHHHHH
Confidence            4456899999999999999999986     445554444 6888888887743 344443

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.48  E-value=0.0026  Score=53.81  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|+|||||++.|+-...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35678999999999999999999988654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.48  E-value=0.0024  Score=55.11  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++.+++|.||+|||||||.+.|+-.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        23 VKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            367789999999999999999999876

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.48  E-value=0.0027  Score=52.84  Aligned_cols=29  Identities=14%  Similarity=0.266  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|+|||||.+.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            36778999999999999999999997653

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.48  E-value=0.0027  Score=52.61  Aligned_cols=24  Identities=38%  Similarity=0.450  Sum_probs=21.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++|.|+|+++||||||++.|.+.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999998766

>PRK10908 cell division protein FtsE; Provisional

Probab=96.48  E-value=0.0026  Score=54.63  Aligned_cols=29  Identities=17%  Similarity=0.225  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         25 MRPGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999987653

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.47  E-value=0.0037  Score=61.18  Aligned_cols=31  Identities=23%  Similarity=0.397  Sum_probs=28.0

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .....++-|+|.||+|+|||+||..+|+++|
T Consensus        60 ~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG   90 (450)
T COG1224          60 QGKMAGRGILIVGPPGTGKTALAMGIARELG   90 (450)
T ss_pred             hCcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4456679999999999999999999999997

>COG4639 Predicted kinase [General function prediction only]

Probab=96.47  E-value=0.0033  Score=55.07  Aligned_cols=72  Identities=14%  Similarity=0.337  Sum_probs=47.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHH---HHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEE---EFCE  209 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag---~F~e  209 (251)
                      ..++++.|++||||||+|+...  .+.+++++|+++--.+                       ....+..+.+   +-.+
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg-----------------------~~~~~e~sqk~~~~~~~   56 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLG-----------------------VSASKENSQKNDELVWD   56 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhh-----------------------hchhhhhccccHHHHHH
Confidence            3689999999999999998743  3568999988741111                       1111111211   2334


Q ss_pred             HHHHHHHHHHHcCCcEEEEc
Q 045245          210 HALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       210 ~A~k~I~eI~~~Gk~PILVG  229 (251)
                      .+.+.+++..++|+..|+..
T Consensus        57 ~l~~~l~qrl~~Gk~tiidA   76 (168)
T COG4639          57 ILYKQLEQRLRRGKFTIIDA   76 (168)
T ss_pred             HHHHHHHHHHHcCCeEEEEc
Confidence            55677888888999988853

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=96.46  E-value=0.011  Score=56.64  Aligned_cols=101  Identities=22%  Similarity=0.302  Sum_probs=57.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCc--------eEecCCcceecccccccCCCCccccCCCCeEEecc----CCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE--------AINSNKIQVYKGLDIATNKVTASERQGVPHHLLGF----VDP  198 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~--------VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~----~d~  198 (251)
                      ...|+|++-|+-|||||+||++||++++.+        +|-.|++- +..-+..+.-       ...+.+.|.    .+|
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg-~D~r~l~~~~-------p~~cr~~di~~Fy~dP  140 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG-NDLRNLYNKF-------PARCRLPDISMFYKDP  140 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccC-ccchhccccC-------CcccCchhHHHhccCC
Confidence            345899999999999999999999999854        33344431 1111111111       112333332    234


Q ss_pred             CCccCHHHHHHH--------HHHHHHHHHHcCCcEEEEcccH---HHHHHHHc
Q 045245          199 EADYPEEEFCEH--------ALRAIDKIIENGHLHIIVGGSN---TYIEALVE  240 (251)
Q Consensus       199 ~e~fsag~F~e~--------A~k~I~eI~~~Gk~PILVGGTg---lYlkaLl~  240 (251)
                      ..+. ...+..+        ...+++.++..|.-++|.---.   .|++|+.+
T Consensus       141 S~dl-sa~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~  192 (393)
T KOG3877|consen  141 SGDL-SAAMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRD  192 (393)
T ss_pred             CccH-HHHHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHh
Confidence            4442 2333322        2578899999999888853211   25555544

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.46  E-value=0.0025  Score=54.88  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++.++++|+||+|||||.+.|.....
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~   60 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAK   60 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            348999999999999999999988654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.46  E-value=0.0032  Score=53.32  Aligned_cols=28  Identities=21%  Similarity=0.456  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.++.|.||+|||||+++..++...
T Consensus         9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~   36 (209)
T TIGR02237         9 VERGTITQIYGPPGSGKTNICMILAVNA   36 (209)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4778899999999999999999988643

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.46  E-value=0.0022  Score=61.94  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=27.2

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      -..+++..++|+||||||||||++.|+.-+.
T Consensus       356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~  386 (529)
T TIGR02868       356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLD  386 (529)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3457889999999999999999999987764

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.46  E-value=0.014  Score=55.75  Aligned_cols=98  Identities=15%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYP  203 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fs  203 (251)
                      +..+..+|.|.|++|+|||||.-+|..++-     ..||..|.-.-|.+=+|.-.+.+-.+...-|--|+-..+-..  +
T Consensus        47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG--~  124 (323)
T COG1703          47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG--T  124 (323)
T ss_pred             cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc--c
Confidence            335678999999999999999999998773     468888987666666666666666555444444554444333  2


Q ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEE
Q 045245          204 EEEFCEHALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       204 ag~F~e~A~k~I~eI~~~Gk~PILV  228 (251)
                      .+.--+.....+.-+-..|-..||+
T Consensus       125 lGGlS~at~~~i~~ldAaG~DvIIV  149 (323)
T COG1703         125 LGGLSRATREAIKLLDAAGYDVIIV  149 (323)
T ss_pred             chhhhHHHHHHHHHHHhcCCCEEEE
Confidence            3444444555555555678888874

>PHA02244 ATPase-like protein

Probab=96.46  E-value=0.0028  Score=61.52  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..+..|+|.||||+|||++|+.++..++.+.+..+
T Consensus       117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In  151 (383)
T PHA02244        117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN  151 (383)
T ss_pred             hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            44567899999999999999999999987766553

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=96.45  E-value=0.0027  Score=54.16  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+-..
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            3678899999999999999999998765

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.45  E-value=0.0026  Score=55.50  Aligned_cols=28  Identities=18%  Similarity=0.301  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|||||||++.|+-.+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         26 IPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3677899999999999999999998765

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.45  E-value=0.0028  Score=52.74  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++..++|.||+|||||||.+.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          23 VEKGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36678999999999999999999987653

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.44  E-value=0.0034  Score=61.31  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc----C---CceEecCCcc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF----S---GEAINSNKIQ  168 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~---~~VIS~Ds~Q  168 (251)
                      .++.+++++||||+||||+..+||..+    +   ..++..|.+.
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r  233 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR  233 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence            567899999999999999999998753    2   3577788854

>cd01394 radB RadB

Probab=96.44  E-value=0.0032  Score=53.74  Aligned_cols=28  Identities=36%  Similarity=0.552  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.++.|.|++|||||+++..++...
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          16 VERGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4778899999999999999999998654

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.44  E-value=0.012  Score=53.31  Aligned_cols=84  Identities=12%  Similarity=0.179  Sum_probs=46.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCc--cccCCCCeEEeccCCCCCccCHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTA--SERQGVPHHLLGFVDPEADYPEEE  206 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~--eEr~gvpHhLVD~~d~~e~fsag~  206 (251)
                      ....+..|+|.|.||+|||||...|..+...++ +  .+      +-+|..+..  .+.++.+..++|--.+.+.-.-..
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~--~~------~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~   97 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-S--AF------QSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQR   97 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-C--CC------CCceEEEEEEEEEECCeEEEEEECCCcCcchhhHH
Confidence            335567899999999999999999987643222 1  11      001111111  122455667888766654321122


Q ss_pred             HHHHHHHHHHHHHHc
Q 045245          207 FCEHALRAIDKIIEN  221 (251)
Q Consensus       207 F~e~A~k~I~eI~~~  221 (251)
                      ..+.+.+.+.+..++
T Consensus        98 ~~~~~~~~I~~~l~~  112 (249)
T cd01853          98 VNRKILSSIKRYLKK  112 (249)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            333445555555543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.44  E-value=0.0028  Score=55.13  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-..
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         25 CPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567899999999999999999998755

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.44  E-value=0.0027  Score=55.57  Aligned_cols=28  Identities=21%  Similarity=0.336  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+...
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         29 FEQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4677899999999999999999998643

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.43  E-value=0.0027  Score=55.37  Aligned_cols=29  Identities=24%  Similarity=0.338  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36778999999999999999999987653

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.43  E-value=0.0029  Score=61.95  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      .++.+|+++|++|+||||++..||..+.     ..++.+|.+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            3578999999999999999999987662     457888875

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.42  E-value=0.0029  Score=54.35  Aligned_cols=29  Identities=28%  Similarity=0.367  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|+|||||.+.|+-...
T Consensus        26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          26 IKPGETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            36778999999999999999999997653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.42  E-value=0.0029  Score=53.92  Aligned_cols=29  Identities=24%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+..+.
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            36678999999999999999999987653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.42  E-value=0.0028  Score=54.91  Aligned_cols=29  Identities=17%  Similarity=0.267  Sum_probs=25.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++.+++|.||+|||||||++.|+-..
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         29 SLRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34677899999999999999999998754

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.42  E-value=0.0026  Score=55.13  Aligned_cols=29  Identities=21%  Similarity=0.133  Sum_probs=25.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++.+++|.||+|||||||.+.|+.-.
T Consensus         9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177          9 VMGYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34677899999999999999999998654

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.42  E-value=0.011  Score=57.25  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++|.||+|+|||+|+.+++.++
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l  154 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Confidence            4579999999999999999999874

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.41  E-value=0.0029  Score=54.50  Aligned_cols=29  Identities=31%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46778999999999999999999997653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.41  E-value=0.003  Score=54.24  Aligned_cols=26  Identities=23%  Similarity=0.301  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+++.+++|.||+|+|||||.+.+..
T Consensus        18 i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          18 IPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            46778999999999999999999864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.41  E-value=0.0029  Score=53.52  Aligned_cols=29  Identities=31%  Similarity=0.287  Sum_probs=25.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|+|||||.+.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        23 LNAGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46778999999999999999999988653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=96.41  E-value=0.0033  Score=51.16  Aligned_cols=28  Identities=14%  Similarity=0.349  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .+.+.+|+||+|+||||++.+|.-.++.
T Consensus        18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~   45 (202)
T PF13476_consen   18 SPGLNVIYGPNGSGKSTILEAIRYALGG   45 (202)
T ss_dssp             -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4579999999999999999999776654

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.39  E-value=0.0029  Score=52.26  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=18.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+|.||+|+|||+++..+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            79999999999998877776665

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.39  E-value=0.003  Score=54.58  Aligned_cols=28  Identities=21%  Similarity=0.395  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|||||||++.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            3677899999999999999999999765

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.38  E-value=0.0038  Score=63.95  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=28.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      .+++.||||+|||++|+.||+.++..++..|.
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~  517 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDM  517 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEEEeC
Confidence            57999999999999999999999877776653

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.38  E-value=0.0031  Score=54.90  Aligned_cols=30  Identities=17%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|+|||||++.|+-.+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346778999999999999999999987653

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=96.38  E-value=0.0027  Score=54.80  Aligned_cols=26  Identities=12%  Similarity=0.263  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++ +++|+||+|+|||||.+.|+--.
T Consensus        21 ~~g-~~~i~G~nGsGKStll~al~~l~   46 (197)
T cd03278          21 PPG-LTAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence            445 89999999999999999997443

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.37  E-value=0.0031  Score=53.48  Aligned_cols=27  Identities=30%  Similarity=0.300  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++.+++|.||+|+|||||++.|+-.
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          30 VKPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            366789999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.37  E-value=0.0032  Score=54.71  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=25.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-.+.
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999997653

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.37  E-value=0.0043  Score=62.04  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .-+++++|||||||||......+.++.
T Consensus       258 ~GliLvTGPTGSGKTTTLY~~L~~ln~  284 (500)
T COG2804         258 QGLILVTGPTGSGKTTTLYAALSELNT  284 (500)
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence            468999999999999999999888874

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.37  E-value=0.0031  Score=54.23  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++.+++|.||+|+|||||.+.|+-..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            667899999999999999999998765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.37  E-value=0.0032  Score=55.09  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         26 FEGGAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35678999999999999999999997653

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.37  E-value=0.011  Score=55.85  Aligned_cols=93  Identities=19%  Similarity=0.103  Sum_probs=48.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccc--cCCCC----ccccCCCCeEEeccCCCCCccC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIA--TNKVT----ASERQGVPHHLLGFVDPEADYP  203 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIg--TakP~----~eEr~gvpHhLVD~~d~~e~fs  203 (251)
                      ..-++|.||||+|||.||.++|+.+   +..|+-.+.-.+...+.-.  .+...    .+....++--.+|......  .
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~--~  260 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK--I  260 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC--C
Confidence            3679999999999999999999876   3333333222222222111  11111    1223455666666553321  1


Q ss_pred             HHHHHHHHHHHHHHHHHcCCcEEE
Q 045245          204 EEEFCEHALRAIDKIIENGHLHII  227 (251)
Q Consensus       204 ag~F~e~A~k~I~eI~~~Gk~PIL  227 (251)
                      -....+.....++.-..+++..||
T Consensus       261 t~~~~~~Lf~iin~R~~~~k~tIi  284 (329)
T PRK06835        261 TEFSKSELFNLINKRLLRQKKMII  284 (329)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEE
Confidence            112223344566666666655444

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.36  E-value=0.0034  Score=52.26  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|||||||++.|+-...
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          23 EIKPGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346778999999999999999999987654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.36  E-value=0.0032  Score=55.97  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-..
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         24 LESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3677899999999999999999999765

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=96.36  E-value=0.0066  Score=58.38  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++|.||+|+|||+|++.++.+.
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~  172 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYI  172 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999876

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.36  E-value=0.0031  Score=57.58  Aligned_cols=25  Identities=24%  Similarity=0.329  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++|.||||+|||++|+.+++.+
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHH
Confidence            3479999999999999999888765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.36  E-value=0.0033  Score=53.50  Aligned_cols=30  Identities=30%  Similarity=0.266  Sum_probs=26.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|||||||.+.|+..+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346778999999999999999999998654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.36  E-value=0.0031  Score=54.75  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         24 IDQGEVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999997653

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.36  E-value=0.0029  Score=58.18  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+..++|+|||||||||+++.|...++
T Consensus       142 ~~~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       142 ASRKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            3567999999999999999999998775

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK13768 GTPase; Provisional

Probab=96.35  E-value=0.0043  Score=55.66  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds  166 (251)
                      +++++|.||+||||||++..++..+.     ..+|..|.
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~   40 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP   40 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence            46899999999999999998887652     34677764

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.35  E-value=0.0033  Score=54.73  Aligned_cols=28  Identities=14%  Similarity=0.195  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++.+++|.||+|||||||++.|+-...
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5678999999999999999999987653

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.35  E-value=0.0055  Score=54.52  Aligned_cols=105  Identities=14%  Similarity=0.098  Sum_probs=64.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccC-CCCeEEeccC-CCCC----ccCHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQ-GVPHHLLGFV-DPEA----DYPEE  205 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~-gvpHhLVD~~-d~~e----~fsag  205 (251)
                      +++.|+|-|.=||||||.++.|++.+...-+.          -+.|+.|+-.... .+.+.+++.. ..+.    ..=++
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~----------v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaa   71 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIK----------VVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAA   71 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCe----------EEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence            46799999999999999999999988533221          1256777762221 1234444432 1111    11256


Q ss_pred             HHHHHHHHHHHHHHHcCCcEEE--EcccHHHHHHHHcCCchhh
Q 045245          206 EFCEHALRAIDKIIENGHLHII--VGGSNTYIEALVEDSIINF  246 (251)
Q Consensus       206 ~F~e~A~k~I~eI~~~Gk~PIL--VGGTglYlkaLl~g~~~~~  246 (251)
                      +..++..+.|.....+|+++|.  -=.|.+..++...|+..++
T Consensus        72 dR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~  114 (208)
T COG0125          72 DRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDW  114 (208)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHH
Confidence            6666677888888888888777  2345555555555544443

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.35  E-value=0.0033  Score=54.38  Aligned_cols=28  Identities=21%  Similarity=0.338  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|||||||++.|+-.+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          26 IPPGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             ecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            3677899999999999999999999765

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.35  E-value=0.0031  Score=58.12  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=26.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.++.|.||+|||||||.+.|+.-+.
T Consensus        24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          24 SIPKGEITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            347789999999999999999999998765

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.35  E-value=0.0034  Score=53.33  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+..+.
T Consensus        21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999987653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.34  E-value=0.0029  Score=59.49  Aligned_cols=28  Identities=29%  Similarity=0.401  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ..+-|+|+|+|||||||+.++|....+.
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~ip~  186 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREIPA  186 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence            3578999999999999999999998863

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.34  E-value=0.0046  Score=57.35  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      +.+++|+|+|++||||||+++.|. ..+...+
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~   34 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALE-DLGYYCV   34 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHH-HcCCeEE
Confidence            445799999999999999999996 4454444

>TIGR00763 lon ATP-dependent protease La

Probab=96.33  E-value=0.0041  Score=64.14  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=28.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      +..+++.+++.||||+|||++|+.||+.++...+
T Consensus       343 ~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~  376 (775)
T TIGR00763       343 GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFV  376 (775)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence            3445678999999999999999999999986544

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.33  E-value=0.003  Score=51.81  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=19.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +++|.||||+|||+|+..++..
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~   22 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYA   22 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHH
Confidence            3789999999999999988664

A related protein is found in archaea.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.33  E-value=0.0035  Score=54.80  Aligned_cols=28  Identities=25%  Similarity=0.331  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|||||||++.|+-.+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        24 IPKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            4677899999999999999999998654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.33  E-value=0.0036  Score=53.13  Aligned_cols=29  Identities=21%  Similarity=0.250  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|+|||||.+.|+-...
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36778999999999999999999987653

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.33  E-value=0.0034  Score=54.42  Aligned_cols=29  Identities=14%  Similarity=0.347  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-...
T Consensus         9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770         9 LKRGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36778999999999999999999997653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.32  E-value=0.0033  Score=59.35  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++-|+|+|+|||||||++++|....
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999876

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.32  E-value=0.0033  Score=55.60  Aligned_cols=29  Identities=21%  Similarity=0.398  Sum_probs=25.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++.+++|.||+|||||||++.|+-.+
T Consensus        35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34677899999999999999999998654

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.32  E-value=0.0033  Score=53.70  Aligned_cols=27  Identities=30%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+ .+++|.||+|||||||++.|+-.+.
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence            56 8999999999999999999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02924 thymidylate kinase

Probab=96.31  E-value=0.0038  Score=55.38  Aligned_cols=31  Identities=16%  Similarity=0.298  Sum_probs=27.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      +.++++.|+|.|+-||||||+++.|++.+..
T Consensus        12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~   42 (220)
T PLN02924         12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKG   42 (220)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4467789999999999999999999999964

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.31  E-value=0.0034  Score=54.92  Aligned_cols=30  Identities=23%  Similarity=0.316  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|||||||.+.|+....
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346778999999999999999999998664

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.31  E-value=0.0037  Score=55.65  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|.||+|||||||.+.|+-..
T Consensus        23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          23 SESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567899999999999999999998765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.31  E-value=0.0036  Score=53.86  Aligned_cols=29  Identities=17%  Similarity=0.329  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|+|||||++.|+-...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          25 IPAGETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            36778999999999999999999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.31  E-value=0.0037  Score=53.45  Aligned_cols=29  Identities=21%  Similarity=0.267  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|+|||||++.|+....
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         25 LAAGEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999988653

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.30  E-value=0.0036  Score=54.68  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|+|||||++.|+-..
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         26 IFKNQITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3567899999999999999999999543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.30  E-value=0.0035  Score=53.11  Aligned_cols=30  Identities=23%  Similarity=0.357  Sum_probs=26.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|+|||||++.|+-...
T Consensus        27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          27 EVPKGELVAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence            457889999999999999999999987653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10436 hypothetical protein; Provisional

Probab=96.30  E-value=0.017  Score=57.01  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..-+|+|+|||||||||+...+.+.++
T Consensus       217 ~~GliLvtGpTGSGKTTtL~a~l~~~~  243 (462)
T PRK10436        217 PQGLILVTGPTGSGKTVTLYSALQTLN  243 (462)
T ss_pred             cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence            346899999999999999888777654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.30  E-value=0.0039  Score=51.76  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=26.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|+|||||.+.|+-.+.
T Consensus        24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            346778999999999999999999988764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01894 EngA1 EngA1 subfamily

Probab=96.30  E-value=0.017  Score=44.78  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=18.4

Q ss_pred             EEEcCCccCHHHHHHHHHHhc
Q 045245          137 FVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       137 vIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++|.+|+|||||..+|....
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~   21 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRR   21 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCc
Confidence            478999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.30  E-value=0.0037  Score=52.44  Aligned_cols=29  Identities=21%  Similarity=0.193  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|+|||||.+.|+..+.
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          23 VRAGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35678999999999999999999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.29  E-value=0.0039  Score=52.18  Aligned_cols=29  Identities=24%  Similarity=0.353  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+....
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999987653

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.29  E-value=0.0043  Score=63.31  Aligned_cols=35  Identities=31%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..++-++|.||+|+|||++|+.+|+.++...+..+
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~  244 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN  244 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence            45678999999999999999999999987766554

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=96.29  E-value=0.0037  Score=47.14  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..|+++|++|||||||...+....
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999997654

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.28  E-value=0.0037  Score=54.63  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++.+++|.||+|||||||++.|+....
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (255)
T PRK11300         29 REQEIVSLIGPNGAGKTTVFNCLTGFYK   56 (255)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence            5678999999999999999999997653

>PRK08727 hypothetical protein; Validated

Probab=96.28  E-value=0.0094  Score=52.59  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++|.||+|+|||.|+.+++.+.
T Consensus        41 ~~~l~l~G~~G~GKThL~~a~~~~~   65 (233)
T PRK08727         41 SDWLYLSGPAGTGKTHLALALCAAA   65 (233)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3569999999999999999997653

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.28  E-value=0.0036  Score=53.96  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=25.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|||||||++.|+..+.
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          29 HVESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            346778999999999999999999987653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=96.28  E-value=0.0039  Score=54.02  Aligned_cols=28  Identities=21%  Similarity=0.302  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++.+++|.||+|||||||.+.|+..+.
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5678999999999999999999997653

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.28  E-value=0.0037  Score=53.62  Aligned_cols=30  Identities=23%  Similarity=0.357  Sum_probs=25.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|+|||||++.|+-.+.
T Consensus        30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        30 TVNAGECVALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346778999999999999999999987653

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.28  E-value=0.004  Score=53.18  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|+|||||++.|+-..
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          27 IKPGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3667899999999999999999998754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.28  E-value=0.011  Score=62.01  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..-+++.||+|+|||+++..||++..
T Consensus       199 ~~n~lL~G~pGvGKT~l~~~la~~i~  224 (857)
T PRK10865        199 KNNPVLIGEPGVGKTAIVEGLAQRII  224 (857)
T ss_pred             cCceEEECCCCCCHHHHHHHHHHHhh
Confidence            34567889999999999999999873

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.28  E-value=0.015  Score=48.37  Aligned_cols=31  Identities=16%  Similarity=0.229  Sum_probs=25.1

Q ss_pred             EEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245          136 VFVMGATATGKTKLSIDLAIHF---S--GEAINSNK  166 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds  166 (251)
                      +.++|++||||||++..++..+   +  ..++.+|.
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~   37 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP   37 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence            7889999999999999998876   2  34666674

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.27  E-value=0.0032  Score=52.85  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++.|+|++||||||++.+|.+.+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999875

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.27  E-value=0.004  Score=53.71  Aligned_cols=29  Identities=21%  Similarity=0.309  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-...
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          24 IPAGKKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            36778999999999999999999987653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.27  E-value=0.0039  Score=54.96  Aligned_cols=28  Identities=18%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|||||||++.|+-..
T Consensus        35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         35 IPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4677899999999999999999998654

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.26  E-value=0.0043  Score=58.22  Aligned_cols=28  Identities=21%  Similarity=0.256  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      -+..++++||+|+||||+|+.+|+.++.
T Consensus        37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         37 IHHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            3467899999999999999999999864

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.26  E-value=0.0039  Score=54.66  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++.+++|.||+|||||||++.|+--
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         29 IPKNRVTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            367789999999999999999999853

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.26  E-value=0.0046  Score=62.58  Aligned_cols=38  Identities=24%  Similarity=0.384  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc-------CCceEecCCcc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF-------SGEAINSNKIQ  168 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-------~~~VIS~Ds~Q  168 (251)
                      .++.+|+|+||+|+||||++.+|+..+       ...++..|.+.
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR  392 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR  392 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence            457899999999999999999998643       24578888854

>PLN02842 nucleotide kinase

Probab=96.26  E-value=0.003  Score=63.20  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             EEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          137 FVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       137 vIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|.||+||||||+|+.|+++++...|+++.+
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdL   31 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDL   31 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence            3789999999999999999999999987654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.26  E-value=0.0038  Score=55.03  Aligned_cols=29  Identities=24%  Similarity=0.393  Sum_probs=25.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (258)
T PRK11701         29 LYPGEVLGIVGESGSGKTTLLNALSARLA   57 (258)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46778999999999999999999997653

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.26  E-value=0.0039  Score=52.97  Aligned_cols=29  Identities=21%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+++.+++|.||+|+|||||++.|+-..
T Consensus        30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          30 KVKAGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44677899999999999999999998754

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.26  E-value=0.0039  Score=53.33  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-..
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        21 VADGEIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3677899999999999999999998765

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.26  E-value=0.004  Score=54.50  Aligned_cols=28  Identities=21%  Similarity=0.326  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|+|||||.+.|+-.+
T Consensus        27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         27 IPQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3667899999999999999999998764

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.0031  Score=65.93  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGE  160 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~  160 (251)
                      ++..++++++++||+|+|||++|+.+|+.+|-+
T Consensus       433 rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk  465 (906)
T KOG2004|consen  433 RGSVQGKILCFVGPPGVGKTSIAKSIARALNRK  465 (906)
T ss_pred             cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc
Confidence            677889999999999999999999999999843

>CHL00176 ftsH cell division protein; Validated

Probab=96.25  E-value=0.0051  Score=62.77  Aligned_cols=36  Identities=25%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ..++-++|.||+|+|||++|+.+|.+.+.++++.+.
T Consensus       214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~  249 (638)
T CHL00176        214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISG  249 (638)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccH
Confidence            345679999999999999999999999887776644

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.25  E-value=0.0049  Score=64.12  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=28.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      .+++.||||+|||++|+.||+.++..++..|.
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~  521 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDM  521 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEeec
Confidence            58999999999999999999999877766653

>TIGR00101 ureG urease accessory protein UreG

Probab=96.24  E-value=0.0046  Score=53.70  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      |..+.|+||+||||||+.+++.+.+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            35789999999999999999988753

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.24  E-value=0.0038  Score=54.50  Aligned_cols=29  Identities=24%  Similarity=0.253  Sum_probs=25.5

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++.+++|.||+|||||||++.|+-..
T Consensus        43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          43 TIEKGEIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34677899999999999999999999765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.23  E-value=0.01  Score=60.79  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.-+++.||+|+|||++++.||++.
T Consensus       203 ~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       203 KNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999987

>cd00880 Era_like Era (E

Probab=96.23  E-value=0.02  Score=43.04  Aligned_cols=20  Identities=30%  Similarity=0.302  Sum_probs=17.7

Q ss_pred             EEcCCccCHHHHHHHHHHhc
Q 045245          138 VMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       138 IsGpTGSGKTTLA~~LAk~l  157 (251)
                      |+|++|||||||++.|....
T Consensus         1 i~G~~gsGKstl~~~l~~~~   20 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQE   20 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCcc
Confidence            57999999999999998754

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=96.23  E-value=0.0043  Score=53.26  Aligned_cols=30  Identities=17%  Similarity=0.356  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|+|||||++.|+-...
T Consensus        36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   65 (226)
T cd03248          36 TLHPGEVTALVGPSGSGKSTVVALLENFYQ   65 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            346778999999999999999999987653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.23  E-value=0.0041  Score=54.44  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ..++.+++|.||+|||||||++.|+-
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         26 IEEKSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhh
Confidence            46778999999999999999999985

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.23  E-value=0.0039  Score=54.19  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=25.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++.+++|.||+|||||||++.|+-..
T Consensus        44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          44 EVPRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34677899999999999999999998754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.22  E-value=0.0042  Score=50.75  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|+|||||++.|+..+.
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            36678999999999999999999988664

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=96.22  E-value=0.0042  Score=54.19  Aligned_cols=26  Identities=15%  Similarity=0.331  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .++.+++|.||+|||||||.+.|+-.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         29 YPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            56789999999999999999999854

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.22  E-value=0.0043  Score=53.30  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|+|||||.+.|+..+.
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             EECCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            346778999999999999999999997653

>PRK06526 transposase; Provisional

Probab=96.21  E-value=0.004  Score=56.44  Aligned_cols=26  Identities=42%  Similarity=0.595  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.-++|.||+|+|||+||..|+.+.
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHH
Confidence            34579999999999999999998754

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=96.21  E-value=0.02  Score=56.60  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      -+++|+|||||||||+...+.+.++
T Consensus       243 GlilitGptGSGKTTtL~a~L~~l~  267 (486)
T TIGR02533       243 GIILVTGPTGSGKTTTLYAALSRLN  267 (486)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHhccC
Confidence            4899999999999999998877765

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.21  E-value=0.0043  Score=55.23  Aligned_cols=29  Identities=14%  Similarity=0.140  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-.+.
T Consensus        32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36778999999999999999999987653

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.21  E-value=0.0047  Score=52.39  Aligned_cols=25  Identities=36%  Similarity=0.404  Sum_probs=23.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++.|+|++|||||||+.+|.+.+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999998864

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.20  E-value=0.0041  Score=54.48  Aligned_cols=29  Identities=17%  Similarity=0.201  Sum_probs=25.4

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++.+++|.||+|+|||||.+.|+-.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        22 SVAAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34677899999999999999999998755

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.20  E-value=0.0045  Score=54.22  Aligned_cols=27  Identities=19%  Similarity=0.229  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|.||+|||||||++.|+-..
T Consensus        29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         29 YKREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            567899999999999999999998653

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.20  E-value=0.0044  Score=54.17  Aligned_cols=27  Identities=22%  Similarity=0.429  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++.+++|.||+|||||||++.|+-.
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         28 FNQNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            356789999999999999999999864

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.19  E-value=0.0041  Score=53.23  Aligned_cols=29  Identities=24%  Similarity=0.332  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|+|||||++.|+-.+.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          30 VKPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            36778999999999999999999987654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09183 transposase/IS protein; Provisional

Probab=96.19  E-value=0.0044  Score=55.95  Aligned_cols=26  Identities=27%  Similarity=0.590  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .++..++|.||+|+|||+||..|+..
T Consensus       100 ~~~~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183        100 ERNENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             hcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            44567889999999999999999765

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.19  E-value=0.0046  Score=54.17  Aligned_cols=28  Identities=18%  Similarity=0.250  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-..
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         27 IYENKITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3677899999999999999999999643

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.19  E-value=0.0045  Score=54.96  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++.+++|.||+|||||||++.|+-.
T Consensus        44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         44 IEKHAVTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            367789999999999999999999864

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=96.18  E-value=0.0042  Score=54.73  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+-..
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            3667899999999999999999999754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.18  E-value=0.0043  Score=60.17  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc-------CCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF-------SGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l-------~~~VIS~Ds~  167 (251)
                      .+++++++||||+||||++..||..+       ...+|.+|.+
T Consensus       220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~  262 (424)
T PRK05703        220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY  262 (424)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence            35799999999999999999887643       2458889985

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.18  E-value=0.0042  Score=57.39  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++-.+.|+|+||||||||++.|+--
T Consensus        30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl   56 (252)
T COG1124          30 IERGETLGIVGESGSGKSTLARLLAGL   56 (252)
T ss_pred             ecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence            367789999999999999999999853

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.18  E-value=0.0046  Score=54.27  Aligned_cols=29  Identities=17%  Similarity=0.253  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+..+.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         30 ILKNSITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            36778999999999999999999987553

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.18  E-value=0.0049  Score=52.88  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+++.++.|+||+|+|||+++..++-.
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123          16 IETGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            467789999999999999999999744

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.18  E-value=0.0042  Score=53.78  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLA  154 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LA  154 (251)
                      +.+.+|+||+|+|||||...|.
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHH
Confidence            5699999999999999999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=96.18  E-value=0.019  Score=57.44  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..-+|+|+|||||||||+...+.+..+
T Consensus       315 ~~Glilv~G~tGSGKTTtl~a~l~~~~  341 (564)
T TIGR02538       315 PQGMVLVTGPTGSGKTVSLYTALNILN  341 (564)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence            346899999999999999988877764

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.18  E-value=0.0046  Score=50.32  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|+|||||.+.|+-.++
T Consensus        22 i~~g~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36668999999999999999999987654

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.18  E-value=0.0048  Score=51.23  Aligned_cols=29  Identities=21%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|+|||||.+.|+-...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46778999999999999999999987653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.18  E-value=0.0042  Score=52.96  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .|+|+|++|+||||+.+++.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            37899999999999999999887

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.17  E-value=0.0046  Score=53.51  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++.+++|.||+|||||||++.|+-...
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5678999999999999999999987653

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.16  E-value=0.0053  Score=52.52  Aligned_cols=104  Identities=21%  Similarity=0.180  Sum_probs=50.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCcceecccccccCCCCc----cccCCCCeEEeccCCCCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKIQVYKGLDIATNKVTA----SERQGVPHHLLGFVDPEAD  201 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~QvYk~lsIgTakP~~----eEr~gvpHhLVD~~d~~e~  201 (251)
                      .++.-++|.||+|+|||.||..++.+.   +  ...++.+.  +...+.-.-...+.    .....++--.+|...... 
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~--L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~-  121 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD--LLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEP-  121 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH--HHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS--
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc--eeccccccccccchhhhcCccccccEecccccceee-
Confidence            445679999999999999999998754   2  22333322  22222211111111    223455666677654332 


Q ss_pred             cCHHHHHHHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245          202 YPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED  241 (251)
Q Consensus       202 fsag~F~e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g  241 (251)
                      .+ ....+...+.|+.-.. ++ |+|+ -|++-...+..-
T Consensus       122 ~~-~~~~~~l~~ii~~R~~-~~-~tIi-TSN~~~~~l~~~  157 (178)
T PF01695_consen  122 LS-EWEAELLFEIIDERYE-RK-PTII-TSNLSPSELEEV  157 (178)
T ss_dssp             ---HHHHHCTHHHHHHHHH-T--EEEE-EESS-HHHHHT-
T ss_pred             ec-ccccccchhhhhHhhc-cc-CeEe-eCCCchhhHhhc
Confidence            11 1122333455555544 23 6555 355555554433

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.16  E-value=0.0057  Score=56.27  Aligned_cols=31  Identities=26%  Similarity=0.240  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      .+..+++.||+|+|||++|+.+|+.++...+
T Consensus        42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~   72 (329)
T COG0714          42 AGGHVLLEGPPGVGKTLLARALARALGLPFV   72 (329)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            3568999999999999999999999985433

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.16  E-value=0.0048  Score=54.08  Aligned_cols=28  Identities=18%  Similarity=0.373  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|||||||++.|+-.+
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         27 FPENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3677899999999999999999998765

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.16  E-value=0.0044  Score=55.24  Aligned_cols=29  Identities=28%  Similarity=0.394  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+-.+.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         24 FSLSPVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            35678999999999999999999987553

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.15  E-value=0.0043  Score=55.10  Aligned_cols=28  Identities=32%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-.+
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3677899999999999999999998765

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.15  E-value=0.0049  Score=53.87  Aligned_cols=28  Identities=21%  Similarity=0.338  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-.+
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         27 FEEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            3667899999999999999999999654

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.15  E-value=0.0048  Score=55.16  Aligned_cols=30  Identities=17%  Similarity=0.341  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|||||||.+.|+-.+.
T Consensus        46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          46 DVREGEIFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346778999999999999999999987653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=96.15  E-value=0.0044  Score=45.85  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=20.7

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++|.||||+|||+++..++....
T Consensus         2 ~~~i~~~~G~GKT~~~~~~~~~~~   25 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELL   25 (144)
T ss_pred             CEEEECCCCCchhHHHHHHHHHHH
Confidence            478999999999999988887663

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>COG3911 Predicted ATPase [General function prediction only]

Probab=96.15  E-value=0.0053  Score=54.06  Aligned_cols=29  Identities=34%  Similarity=0.417  Sum_probs=24.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.++++|+|.+|+|||||..+|+++=
T Consensus         5 ~~nR~~~fIltGgpGaGKTtLL~aLa~~G   33 (183)
T COG3911           5 PFNRHKRFILTGGPGAGKTTLLAALARAG   33 (183)
T ss_pred             ccccceEEEEeCCCCCcHHHHHHHHHHcC
Confidence            34556899999999999999999998854

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.14  E-value=0.0048  Score=55.32  Aligned_cols=28  Identities=29%  Similarity=0.202  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+-.+
T Consensus        35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3677899999999999999999999765

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=96.14  E-value=0.0049  Score=54.29  Aligned_cols=30  Identities=17%  Similarity=0.282  Sum_probs=26.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|+|||||++.|+-.+.
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   56 (257)
T PRK10619         27 QANAGDVISIIGSSGSGKSTFLRCINFLEK   56 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346778999999999999999999998764

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=96.14  E-value=0.015  Score=48.67  Aligned_cols=25  Identities=28%  Similarity=0.197  Sum_probs=22.7

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..|+|.|+.|+|||||..++.+...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~   30 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEF   30 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcC
Confidence            6899999999999999999997664

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.14  E-value=0.0051  Score=53.71  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|+|||||++.|+-..
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         26 IPARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4677899999999999999999998654

>cd04159 Arl10_like Arl10-like subfamily

Probab=96.13  E-value=0.0042  Score=47.70  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             EEEEcCCccCHHHHHHHHHHh
Q 045245          136 VFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~  156 (251)
                      |+|+|++|+|||||.++|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999999764

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN03025 replication factor C subunit; Provisional

Probab=96.12  E-value=0.0052  Score=56.32  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +-+++.||+|+||||+|..+|+++.
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHh
Confidence            3478999999999999999999873

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=96.12  E-value=0.005  Score=54.77  Aligned_cols=28  Identities=18%  Similarity=0.281  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|||||||++.|+-.+
T Consensus        27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         27 LKPGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3677899999999999999999998754

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.12  E-value=0.0047  Score=56.96  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=26.5

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++...++.++-+++||||+||||+.+.|=+..
T Consensus        26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             CceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence            34566888999999999999999999885543

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.11  E-value=0.005  Score=54.97  Aligned_cols=30  Identities=23%  Similarity=0.357  Sum_probs=25.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|||||||.+.|+-...
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (271)
T PRK13632         31 EINEGEYVAILGHNGSGKSTISKILTGLLK   60 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346778999999999999999999987653

>PF13479 AAA_24: AAA domain

Probab=96.11  E-value=0.024  Score=49.29  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ++..++|.|++|+||||+|..+   =+..+|..|
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E   32 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTE   32 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC---CCeEEEEeC
Confidence            4568999999999999999988   123355554

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.11  E-value=0.0058  Score=52.50  Aligned_cols=28  Identities=25%  Similarity=0.258  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++|.|+|++|||||||..++.++++
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3568999999999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.11  E-value=0.0052  Score=53.77  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|.||+|||||||.+.|+-..
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         26 EQNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            567899999999999999999998653

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.11  E-value=0.005  Score=53.37  Aligned_cols=23  Identities=17%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      +++++|.||+|+|||||.+.++-
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            47999999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=96.11  E-value=0.0052  Score=53.66  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++.+++|.||+|||||||.+.|+-.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         26 IEENQVTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            356789999999999999999999864

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=96.11  E-value=0.015  Score=56.75  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.++|.||+|+|||+|+++++.++
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~l  165 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHAL  165 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHH
Confidence            3678999999999999999999865

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.11  E-value=0.0067  Score=61.92  Aligned_cols=35  Identities=29%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..++-+++.||+|+|||++|+.+|.+.+...++.+
T Consensus       485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~  519 (733)
T TIGR01243       485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR  519 (733)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence            44566899999999999999999999988777654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=96.11  E-value=0.0054  Score=52.52  Aligned_cols=28  Identities=14%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|+|||||.+.|+-..
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          24 IPTGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3667899999999999999999999765

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.11  E-value=0.005  Score=54.97  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+-.+
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         30 VPGGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3677899999999999999999998765

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=96.11  E-value=0.0043  Score=59.04  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=26.8

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC------CceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS------GEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~------~~VIS~Ds~  167 (251)
                      +++++|++|+||||+++.|++.+.      ..+++.|.+
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~   39 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDI   39 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccc
Confidence            368999999999999999997764      247777764

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK13764 ATPase; Provisional

Probab=96.10  E-value=0.0046  Score=62.98  Aligned_cols=28  Identities=21%  Similarity=0.488  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...+.|+|+|||||||||++++|++.++
T Consensus       255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        255 ERAEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3346699999999999999999998875

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.10  E-value=0.0048  Score=61.32  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc----C---CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF----S---GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~---~~VIS~Ds~  167 (251)
                      .++.+++++||||+||||++.+||..+    +   ..++.+|.+
T Consensus       254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~  297 (484)
T PRK06995        254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY  297 (484)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence            456899999999999999999999654    2   347888885

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.10  E-value=0.0051  Score=54.94  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=25.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++.+++|.||+|||||||++.|+-..
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         35 DIPRGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34677899999999999999999998754

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=96.10  E-value=0.0054  Score=54.85  Aligned_cols=37  Identities=16%  Similarity=0.421  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++++|+|.|++||||-|.+.+++++|+...+|++.+
T Consensus         6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdL   42 (195)
T KOG3079|consen    6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDL   42 (195)
T ss_pred             cCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHH
Confidence            5678999999999999999999999999999998554

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=96.10  E-value=0.0052  Score=54.28  Aligned_cols=29  Identities=21%  Similarity=0.382  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+..+.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   55 (262)
T PRK09984         27 IHHGEMVALLGPSGSGKSTLLRHLSGLIT   55 (262)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            46778999999999999999999997653

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=96.10  E-value=0.005  Score=54.85  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=25.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +..++.+++|.||+|||||||++.|+-.+
T Consensus        42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         42 QFEKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            44678899999999999999999999765

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=96.10  E-value=0.0051  Score=53.36  Aligned_cols=28  Identities=14%  Similarity=0.242  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|+|||||.+.|+-.+
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        25 VDPGELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3677899999999999999999999765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.10  E-value=0.005  Score=55.00  Aligned_cols=29  Identities=17%  Similarity=0.163  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||++.|+-.+.
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   58 (280)
T PRK13649         30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHV   58 (280)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36678999999999999999999987653

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.10  E-value=0.0064  Score=52.27  Aligned_cols=29  Identities=24%  Similarity=0.572  Sum_probs=25.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++.++.|.||+|+|||+++..++...
T Consensus        19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~   47 (225)
T PRK09361         19 GFERGTITQIYGPPGSGKTNICLQLAVEA   47 (225)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            44778899999999999999999998643

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=96.09  E-value=0.0051  Score=54.84  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||++.|+-..
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         30 VPRGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3667899999999999999999999765

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.09  E-value=0.0056  Score=53.97  Aligned_cols=28  Identities=11%  Similarity=0.213  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+...+|+||+|||||||+.+|.--++
T Consensus        23 ~~~~~~~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          23 FDPQFNAITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467899999999999999999986554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd04127 Rab27A Rab27a subfamily

Probab=96.09  E-value=0.022  Score=46.09  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|++.|++|+|||||..++...
T Consensus         5 ~ki~ivG~~~vGKTsli~~~~~~   27 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDN   27 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.09  E-value=0.0052  Score=52.33  Aligned_cols=30  Identities=27%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.|++|+|||||.+.|+....
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          22 TLAAGEALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346788999999999999999999987653

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.09  E-value=0.0055  Score=47.84  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=19.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|++|+|||||..++...
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=96.09  E-value=0.0049  Score=53.77  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++.+++|.||+|||||||++.|+-.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         30 INKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            366789999999999999999999874

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=96.08  E-value=0.0055  Score=54.60  Aligned_cols=28  Identities=21%  Similarity=0.231  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+-..
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         42 IPEKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4677899999999999999999998755

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=96.08  E-value=0.0055  Score=48.67  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|++|||||||+.++...
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999753

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.08  E-value=0.0048  Score=53.49  Aligned_cols=28  Identities=32%  Similarity=0.382  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+-.+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         28 INQGEIVTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            3677899999999999999999998755

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.08  E-value=0.0052  Score=54.48  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+-..
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   52 (258)
T PRK13548         25 LRPGEVVAILGPNGAGKSTLLRALSGEL   52 (258)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3677899999999999999999999765

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=96.08  E-value=0.022  Score=46.55  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHH
Q 045245          135 VVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .|+|+|++|||||||..++..
T Consensus         2 ki~vvG~~~vGKTsli~~~~~   22 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLT   22 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999874

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
3a8t_A	339	Plant Adenylate Isopentenyltransferase In Complex W		2e-27
2qgn_A	322	Crystal Structure Of Trna Isopentenylpyrophosphate		1e-20
3eph_A	409	Crystallographic Snapshots Of Eukaryotic Dimethylal		1e-20
3d3q_A	340	Crystal Structure Of Trna Delta(2)-Isopentenylpyrop		9e-20
3foz_A	316	Structure Of E. Coli Isopentenyl-Trna Transferase I		7e-16
2zm5_A	316	Crystal Structure Of Trna Modification Enzyme Miaa		2e-14
3crm_A	323	Structure Of Trna Dimethylallyltransferase: Rna Mod		1e-11

>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp Length = 339

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            K+K++ +MGAT TGK++LSIDLA HF  E INS+K+QVYKGLDI TNK++  +R GVPH
Sbjct: 38  RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 97
Query: 191 HLLGFVDP-EADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           HLLG VDP   +    +F   A +A+ +I     L ++VGGSN++I AL+ D
Sbjct: 98  HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVD 149

>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate Transferase (Bh2366) From Bacillus Halodurans, Northeast Structural Genomics Consortium Target Bhr41. Length = 322

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           K+K+V ++G TA GKTK S+ LA   +GE I+ +  QVY+G DI T K+TA E  GVPHH
Sbjct: 2   KEKLVAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQVYRGXDIGTAKITAEEXDGVPHH 61
Query: 192 LLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED-SIINFRANY 250
           L+   DP   +   +F + A   I +I E G L  +VGG+  Y+ A++   ++ + RA+ 
Sbjct: 62  LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADE 121
Query: 251 D 251
           D
Sbjct: 122 D 122

>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic Dimethylallyltransferase Acting On Trna: Insight Into Trna Recognition And Reaction Mechanism Length = 409

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 67/106 (63%)
Query: 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHL 192
           KKV+ + G T  GK++LSI LA  F+GE INS+ +QVYK + I TNK    ER+G+PHH+
Sbjct: 2   KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 61
Query: 193 LGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEAL 238
           +  VD   +Y    F    + AI+ I   G + I+VGG++ Y++ L
Sbjct: 62  MNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTL 107

>pdb|3D3Q|A Chain A, Crystal Structure Of Trna Delta(2)-Isopentenylpyrophosphate Transferase (Se0981) From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser100 Length = 340

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 69/105 (65%)
Query: 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLG 194
           ++ ++G TA+GKT+LSI++A  F+GE I+ +  QVY+G DI T KVT  E +G+PH+ + 
Sbjct: 9   LIVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXID 68
Query: 195 FVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALV 239
            + P+A +   EF + A + I  I   G + II GG+  YI++L+
Sbjct: 69  ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLL 113

>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In Complex With E. Coli Trna(Phe) Length = 316

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 59/107 (55%)
Query: 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL 193
           K +F+MG TA+GKT L+I+L      E I+ +   +YKG+DI T K  A E    PH LL
Sbjct: 11  KAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLL 70
Query: 194 GFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVE 240
              DP   Y   +F   AL  +  I   G + ++VGG+  Y +AL+E
Sbjct: 71  DIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLE 117

>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The Complex With Trna(Phe) Length = 316

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 56/107 (52%)
Query: 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL 193
           K +F+ G TA+GKT L+I+L      E I+ +   +YKG DI T K  A E    PH LL
Sbjct: 11  KAIFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRLL 70
Query: 194 GFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVE 240
              DP   Y   +F   AL     I   G + ++VGG+  Y +AL+E
Sbjct: 71  DIRDPSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALLE 117

>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna Modification Through A Channel Length = 323

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 57/106 (53%)
Query: 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLG 194
            +F+MG TA GKT L++ LA     E I+ +   +Y+G+DI T K +       PH L+ 
Sbjct: 7   AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66
Query: 195 FVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVE 240
             DP   Y   EF   AL A+ K    G + ++VGG+  Y +AL+E
Sbjct: 67  IRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLE 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	1e-52
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	4e-46
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	4e-43
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	8e-43
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	8e-43
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	1e-42
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	1e-38

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339

 Score =  173 bits (439), Expect = 1e-52
 Identities = 59/112 (52%), Positives = 80/112 (71%), Gaps = 1/112 (0%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            K+K++ +MGAT TGK++LSIDLA HF  E INS+K+QVYKGLDI TNK++  +R GVPH
Sbjct: 38  RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 97

Query: 191 HLLGFVDP-EADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           HLLG VDP   +    +F   A +A+ +I     L ++VGGSN++I AL+ D
Sbjct: 98  HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVD 149

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409

 Score =  157 bits (399), Expect = 4e-46
 Identities = 46/109 (42%), Positives = 67/109 (61%)

Query: 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHL 192
           KKV+ + G T  GK++LSI LA  F+GE INS+ +QVYK + I TNK    ER+G+PHH+
Sbjct: 2   KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 61

Query: 193 LGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           +  VD   +Y    F    + AI+ I   G + I+VGG++ Y++ L   
Sbjct: 62  MNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNK 110

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340

 Score =  148 bits (375), Expect = 4e-43
 Identities = 44/111 (39%), Positives = 74/111 (66%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
            K  ++ ++G TA+GKT+LSI++A  F+GE I+ + +QVY+G+DI T KVT  E +G+PH
Sbjct: 5   TKPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPH 64

Query: 191 HLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           +++  + P+A +   EF + A + I  I   G + II GG+  YI++L+ +
Sbjct: 65  YMIDILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYN 115

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323

 Score =  146 bits (372), Expect = 8e-43
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQG 187
           M+ +    +F+MG TA GKT L++ LA     E I+ +   +Y+G+DI T K +      
Sbjct: 1   MS-SLPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLAR 59

Query: 188 VPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
            PH L+   DP   Y   EF   AL A+ K    G + ++VGG+  Y +AL+E 
Sbjct: 60  YPHRLIDIRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEG 113

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316

 Score =  146 bits (372), Expect = 8e-43
 Identities = 42/111 (37%), Positives = 60/111 (54%)

Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
           +  K +F+MG TA+GKT L+I+L      E I+ +   +YKG+DI T K  A E    PH
Sbjct: 8   SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPH 67

Query: 191 HLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
            LL   DP   Y   +F   AL  +  I   G + ++VGG+  Y +AL+E 
Sbjct: 68  RLLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEG 118

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322

 Score =  146 bits (370), Expect = 1e-42
 Identities = 47/110 (42%), Positives = 69/110 (62%)

Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
           K+K+V ++G TA GKTK S+ LA   +GE I+ + +QVY+G+DI T K+TA E  GVPHH
Sbjct: 2   KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHH 61

Query: 192 LLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
           L+   DP   +   +F + A   I +I E G L  +VGG+  Y+ A++  
Sbjct: 62  LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQ 111

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Length = 253

 Score =  134 bits (339), Expect = 1e-38
 Identities = 18/112 (16%), Positives = 39/112 (34%)

Query: 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL 193
            +  + G T +GKT ++I +A       +  +++Q    +   + +   SE Q      L
Sbjct: 2   LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYL 61

Query: 194 GFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIIN 245
                     + E     L       ++    I+ GGS + +  + +     
Sbjct: 62  DSRPLTEGILDAESAHRRLIFEVDWRKSEEGLILEGGSISLLNCMAKSPFWR 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	100.0
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	100.0
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	99.98
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.97
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	99.96
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	99.94
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.86
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.45
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.36
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	99.33
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.29
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.18
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.09
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.85
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.84
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.79
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.74
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.71
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.69
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.67
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.51
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.5
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.49
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.47
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.44
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.41
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.41
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.4
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.39
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.37
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.36
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.35
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.35
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.33
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.31
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.31
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.3
1via_A	175	Shikimate kinase; structural genomics, transferase	98.3
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.3
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.29
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.28
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.28
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.27
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.27
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.26
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.25
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.24
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.23
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.23
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.22
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.22
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.22
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.2
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.2
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.19
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.19
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.19
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.19
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.18
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.16
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.15
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.14
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.14
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.14
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.13
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.13
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.12
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.12
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.11
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.11
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.11
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.1
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.07
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.06
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.04
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.04
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.04
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.03
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.02
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.02
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.01
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.01
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.01
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.0
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.98
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.96
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.95
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.95
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.93
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.92
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.91
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.91
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.88
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.87
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.86
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.86
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.84
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.84
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.82
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.82
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.81
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.81
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.8
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.8
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.79
3bos_A	242	Putative DNA replication factor; P-loop containing	97.74
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.69
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.67
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.66
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.64
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.64
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.6
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.6
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.6
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.6
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.57
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.56
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.56
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.54
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.53
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.52
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.5
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.47
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.45
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.44
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.44
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.43
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.41
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.38
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.38
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.38
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.33
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.31
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.31
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.3
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.28
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.26
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.24
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.24
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.23
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.23
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.22
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.21
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.21
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.2
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.2
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.2
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.17
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.16
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.16
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.15
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.15
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.14
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.13
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.13
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.11
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.1
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.09
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.09
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.09
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.09
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.09
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.08
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.08
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.07
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.07
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.05
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.05
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.05
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.04
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.04
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.04
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.03
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.02
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.02
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.01
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.0
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.99
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.99
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.96
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.94
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.93
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.92
3co5_A	143	Putative two-component system transcriptional RES	96.91
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.91
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.9
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.9
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.88
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.87
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.87
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.85
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.85
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.84
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.84
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.84
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.8
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.79
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.75
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.74
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.74
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.74
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.74
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.73
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.73
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.71
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.7
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.69
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.69
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.69
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.69
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.67
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.67
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.67
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.64
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.64
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.63
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.61
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.61
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.6
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.6
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.59
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.59
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.59
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.58
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.58
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.58
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.58
1g6h_A	257	High-affinity branched-chain amino acid transport	96.58
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.58
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.57
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.57
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.57
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.57
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.57
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.57
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.56
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.55
3pvs_A	447	Replication-associated recombination protein A; ma	96.54
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.54
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.54
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.53
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.53
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.52
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.52
2qgz_A	308	Helicase loader, putative primosome component; str	96.52
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.51
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.5
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.5
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.5
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.49
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.49
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.49
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.49
2og2_A	359	Putative signal recognition particle receptor; nuc	96.48
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.47
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.46
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.46
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.46
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.46
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.45
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.45
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.44
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.43
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.43
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.43
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.42
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.41
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.41
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.41
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.4
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.4
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.39
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.39
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.39
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.36
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.36
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.34
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.34
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.34
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.33
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.33
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.31
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.3
2fna_A	357	Conserved hypothetical protein; structural genomic	96.29
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.29
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.29
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.29
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	96.28
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.28
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.28
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.28
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.27
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.27
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.26
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.26
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.26
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.26
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.26
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.25
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.25
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.25
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.25
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.22
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.22
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.22
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.21
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.21
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.21
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.2
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.19
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.18
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.17
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.16
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.14
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.14
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.13
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.13
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.13
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.11
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.11
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.09
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.09
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.08
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.07
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.07
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.06
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.05
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.05
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.05
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.04
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.04
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.03
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.03
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.01
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.01
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.99
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.99
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.99
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.98
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.97
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.97
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.97
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.95
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.95
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.94
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.94
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	95.93
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.92
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.92
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.91
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.91
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.89
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.89
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.89
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.87
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.86
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.86
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.85
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.85
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.8
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.79
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.79
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.77
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.77
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.77
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.76
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.73
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.73
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.72
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.72
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.7
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.7
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.7
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.69
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.68
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.67
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.66
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.66
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.65
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.65
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.65
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.64
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.64
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.63
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.63
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.62
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.62
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.61
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.61
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.59
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.57
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.57
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.57
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.56
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.54
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.54
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.53
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.52
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.51
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.51
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.5
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.5
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.49
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.49
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.48
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.47
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.46
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.46
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.45
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.45
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.42
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.42
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.41
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.4
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.4
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.39
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.37
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.37
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.37
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.36
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.35
2xxa_A	433	Signal recognition particle protein; protein trans	95.34
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.34
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	95.33
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.33
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.31
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.29
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.28
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.27
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.27
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.24
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.23
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.22
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.22
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.21
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.19
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.17
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.16
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.15
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.1
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.09
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.08
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.08
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.05
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	95.04
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.02
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.01
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.97
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.96
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.94
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.93
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	94.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.93
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.91
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.91
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.91
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.9
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.89
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.88
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.86
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.86
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	94.85
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.81
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	94.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.78
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.77
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	94.76
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	94.74
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.7
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.7
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.69
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.68
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.66
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.62
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.61
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.59
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.59
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	94.54
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.54
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.53
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.52
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.47
1e69_A	322	Chromosome segregation SMC protein; structural mai	94.43
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.41
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.37
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.33
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.32
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.25
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	94.17

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=100.00  E-value=2.3e-35  Score=271.99  Aligned_cols=112  Identities=38%  Similarity=0.623  Sum_probs=109.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      +.+++|+|+|||||||||||.+||++++.++||+|++|+|++++|+|+||+++|++++||||+|.++|.+.|++++|+++
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~   87 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD   87 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence            55689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245          211 ALRAIDKIIENGHLHIIVGGSNTYIEALVEDS  242 (251)
Q Consensus       211 A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~  242 (251)
                      |.+.|++++++|+.||||||||||++||++|+
T Consensus        88 a~~~i~~i~~~g~~pilVGGTglYi~all~gl  119 (316)
T 3foz_A           88 ALAEMADITAAGRIPLLVGGTMLYFKALLEGL  119 (316)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCHHHHHHHHSCC
T ss_pred             HHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCc
Confidence            99999999999999999999999999999997

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=100.00  E-value=3.6e-35  Score=271.41  Aligned_cols=118  Identities=41%  Similarity=0.701  Sum_probs=112.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      ++++|+|+|||||||||||..||++++.++||+|++|+|++++|+|+||+++|+.++||||+|..+|.+.|++++|+++|
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a   81 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA   81 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEcccHHHHHHHHcCC-------chhhhcc
Q 045245          212 LRAIDKIIENGHLHIIVGGSNTYIEALVEDS-------IINFRAN  249 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~-------~~~~~~~  249 (251)
                      .+.|++++++|+.||||||||||++||++|+       ++++|+.
T Consensus        82 ~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~  126 (322)
T 3exa_A           82 TPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHE  126 (322)
T ss_dssp             HHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHH
T ss_pred             HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHH
Confidence            9999999999999999999999999999995       2356664

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=99.98  E-value=6.1e-33  Score=263.21  Aligned_cols=111  Identities=41%  Similarity=0.743  Sum_probs=108.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHAL  212 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~  212 (251)
                      +++|+|+|||||||||||..||++++.++||+|++|+|++++|+|++|+++|+.++||||+|..+|.+.|++++|.++|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~   81 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM   81 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245          213 RAIDKIIENGHLHIIVGGSNTYIEALVEDSI  243 (251)
Q Consensus       213 k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~  243 (251)
                      +.|++++++|+.||||||||||++||++|+.
T Consensus        82 ~~i~~i~~~g~~pilVGGTglYi~aLl~gl~  112 (409)
T 3eph_A           82 NAIEDIHRRGKIPIVVGGTHYYLQTLFNKRV  112 (409)
T ss_dssp             HHHHHHHTTTCEEEEECSCGGGGGGGGTCSC
T ss_pred             HHHHHHHhcCCCEEEECChHHHHHHHHcccc
Confidence            9999999999999999999999999999964

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.97  E-value=1.2e-31  Score=248.79  Aligned_cols=112  Identities=53%  Similarity=0.845  Sum_probs=109.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCC-CCccCHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDP-EADYPEEEFCE  209 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~-~e~fsag~F~e  209 (251)
                      .++++|+|+|||||||||||..||++++.++||+|++|+|++++|+|+||+++|+.++||||+|..++ .+.|++++|.+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~  117 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS  117 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH
Confidence            35679999999999999999999999999999999999999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245          210 HALRAIDKIIENGHLHIIVGGSNTYIEALVEDS  242 (251)
Q Consensus       210 ~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~  242 (251)
                      ++.+.|+++..+|+.||+||||++|+++++.|+
T Consensus       118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~  150 (339)
T 3a8t_A          118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDR  150 (339)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS
T ss_pred             HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCC
Confidence            999999999999999999999999999999986

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=99.96  E-value=1.2e-29  Score=233.45  Aligned_cols=119  Identities=34%  Similarity=0.544  Sum_probs=108.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      .+++|+|+|||||||||||+.||++++.++|++|++|+|++++|+|++|+++|+.++||||+|..++.+.+++++|.+.+
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a   83 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA   83 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEcccHHHHHHHHcCC------chhhhccc
Q 045245          212 LRAIDKIIENGHLHIIVGGSNTYIEALVEDS------IINFRANY  250 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~------~~~~~~~~  250 (251)
                      .+.++++.++|+.||++|||++|++||++|+      ++++|+.+
T Consensus        84 ~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l  128 (323)
T 3crm_A           84 LAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAI  128 (323)
T ss_dssp             HHHHHHHHHTTCEEEEEESCHHHHHHHHCCC--------------
T ss_pred             HHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHH
Confidence            9999999999999999999999999999997      24566554

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=99.94  E-value=5.3e-27  Score=217.35  Aligned_cols=110  Identities=39%  Similarity=0.718  Sum_probs=107.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHAL  212 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~  212 (251)
                      +++|+|+|||||||||||..||++++.++|++|++|+|++++|+|++|+.+|+.+++|||+|..++.+.+++++|.+++.
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~   86 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAE   86 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245          213 RAIDKIIENGHLHIIVGGSNTYIEALVEDS  242 (251)
Q Consensus       213 k~I~eI~~~Gk~PILVGGTglYlkaLl~g~  242 (251)
                      +.++++..+|+.|||+||+++|+++++.++
T Consensus        87 ~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l  116 (340)
T 3d3q_A           87 KYIKDITRRGKVPIIAGGTGLYIQSLLYNY  116 (340)
T ss_dssp             HHHHHHHHTTCEEEEECCCHHHHHHHHBCS
T ss_pred             HHHHHHHhCCCcEEEECChhhhHHHHHhcc
Confidence            999999999999999999999999999997

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.86  E-value=8.2e-22  Score=171.16  Aligned_cols=107  Identities=16%  Similarity=0.203  Sum_probs=101.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC-ccCHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA-DYPEEEFCEHAL  212 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e-~fsag~F~e~A~  212 (251)
                      ++|+|+|||||||||||+.||++++.++++.|.+++|++++++|++|+++|+.+++||+++..++.+ .++..+|.+.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999988877 899999999999


Q ss_pred             HHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245          213 RAIDKIIENGHLHIIVGGSNTYIEALVED  241 (251)
Q Consensus       213 k~I~eI~~~Gk~PILVGGTglYlkaLl~g  241 (251)
                      +++ ++.++|+.||++||++.|+++++.+
T Consensus        82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~  109 (253)
T 2ze6_A           82 FEV-DWRKSEEGLILEGGSISLLNCMAKS  109 (253)
T ss_dssp             HHH-HTTTTSSEEEEEECCHHHHHHHHHC
T ss_pred             HHH-HHHhCCCCeEEeccHHHHHHHHHhc
Confidence            999 8888999999999999999999876

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.45  E-value=6.5e-15  Score=125.16  Aligned_cols=96  Identities=17%  Similarity=0.240  Sum_probs=77.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH--
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA--  211 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A--  211 (251)
                      ++|+|+||||||||||+++|.++++..+        ....+++|++|+++|.+|++|||++..+|.+.+..++|++++  
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~--------~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~   73 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSF--------GFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQF   73 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTE--------EECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCe--------EEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEE
Confidence            5689999999999999999999886422        123578999999999999999999999988877767776665  


Q ss_pred             --------HHHHHHHHHcCCcEEEEcccHHHHHHH
Q 045245          212 --------LRAIDKIIENGHLHIIVGGSNTYIEAL  238 (251)
Q Consensus       212 --------~k~I~eI~~~Gk~PILVGGTglYlkaL  238 (251)
                              ++.+++.+++|+.+|+.+-. -.++.+
T Consensus        74 ~g~~YGt~~~~v~~~l~~g~~vil~id~-~g~~~~  107 (186)
T 1ex7_A           74 SGNYYGSTVASVKQVSKSGKTCILDIDM-QGVKSV  107 (186)
T ss_dssp             TTEEEEEEHHHHHHHHHHTSEEEEECCH-HHHHHH
T ss_pred             cCceeeeecceeeehhhCCCEEEecCCH-HHHHHH
Confidence                    68899999999999887533 233444

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.36  E-value=9.3e-14  Score=119.46  Aligned_cols=93  Identities=17%  Similarity=0.300  Sum_probs=76.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC  208 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~  208 (251)
                      ...++++++|+||||||||||++.|++.++..+.        ...+.+|++|+++|.+|++|++++..++.+.+..+.|.
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~--------~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fl   86 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFV--------YPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFL   86 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEE--------CCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEE
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEE--------eeecccccCCcCCeeccccceeccHHHhhhhhhhhhhh
Confidence            4457789999999999999999999998863222        33567999999999999999999988887766555555


Q ss_pred             HHH----------HHHHHHHHHcCCcEEEEc
Q 045245          209 EHA----------LRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       209 e~A----------~k~I~eI~~~Gk~PILVG  229 (251)
                      +++          ++.+++++++|+.+|+..
T Consensus        87 e~~~~~~n~YGt~~~~v~~~l~~G~~vildi  117 (197)
T 3ney_A           87 EFGSYQGNMFGTKFETVHQIHKQNKIAILDI  117 (197)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred             hhhhhhceecccchhhHHHHHhcCCeEEEEE
Confidence            544          677999999999999965

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=99.33  E-value=1.7e-13  Score=120.05  Aligned_cols=74  Identities=19%  Similarity=0.319  Sum_probs=65.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccc---cccCCCCccccCCCCeEE----eccCCCCCccC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLD---IATNKVTASERQGVPHHL----LGFVDPEADYP  203 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ls---IgTakP~~eEr~gvpHhL----VD~~d~~e~fs  203 (251)
                      ..++.|+|+||||+||||||.+|+++.+ ++|+.|++|+|++.+   |+|++|+      ++||+    +|..++.+.|+
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~~f~  104 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMNLFG  104 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHHHHC
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCCceEEEECCcc------ccccccccceeEEcccccCC
Confidence            3467899999999999999999999987 999999999999999   9999986      89999    99998888777


Q ss_pred             HHHHHHHH
Q 045245          204 EEEFCEHA  211 (251)
Q Consensus       204 ag~F~e~A  211 (251)
                      ++.|.+.+
T Consensus       105 ~~~f~~~a  112 (205)
T 2qmh_A          105 AGAVREDT  112 (205)
T ss_dssp             TTSBCSCC
T ss_pred             HHHHHhcC
Confidence            77776543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.29  E-value=1.8e-13  Score=114.31  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=76.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      +++++|+|+||||||||||++.|++.++..        +....+++|++|+++|+.|++|++++..++.+.+..+.|.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~   77 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETS--------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEY   77 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCC--------CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCc--------EEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEE
Confidence            567899999999999999999999988632        234457799999999999999999987766554433333332


Q ss_pred             ----------HHHHHHHHHHcCCcEEE---EcccHHHHHHH
Q 045245          211 ----------ALRAIDKIIENGHLHII---VGGSNTYIEAL  238 (251)
Q Consensus       211 ----------A~k~I~eI~~~Gk~PIL---VGGTglYlkaL  238 (251)
                                ..+.+++++++|+.+|+   +.|...+.+..
T Consensus        78 ~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~  118 (208)
T 3tau_A           78 AEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAM  118 (208)
T ss_dssp             EEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHC
T ss_pred             EEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhC
Confidence                      24678889999999999   55655554443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.18  E-value=2.5e-12  Score=104.91  Aligned_cols=91  Identities=20%  Similarity=0.265  Sum_probs=64.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH  210 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~  210 (251)
                      .++++++|+||||||||||++.|++.++..        .+..++++|++|+++|.++++|++++..++...+..+.|.++
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--------~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~   74 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--------FAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEY   74 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--------EECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--------EEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEE
Confidence            356799999999999999999999977521        233467789999999999999999886654332222222221


Q ss_pred             ----------HHHHHHHHHHcCCcEEEEc
Q 045245          211 ----------ALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       211 ----------A~k~I~eI~~~Gk~PILVG  229 (251)
                                ..+.++++.++|+.+|+..
T Consensus        75 ~~~~~n~yg~~~~~i~~~l~~g~~vil~i  103 (180)
T 1kgd_A           75 GSHEDAMYGTKLETIRKIHEQGLIAILDV  103 (180)
T ss_dssp             EEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred             EEEcCccccccHHHHHHHHHCCCeEEEEE
Confidence                      2466888889999999964

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.09  E-value=1.1e-11  Score=102.52  Aligned_cols=93  Identities=17%  Similarity=0.214  Sum_probs=66.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH--
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE--  206 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~--  206 (251)
                      ++.++++|+|+||+||||||+++.|++.++..        ++...+.+|++|+..|..+..|++++..++.+....+.  
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~--------~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~   79 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSR--------FRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFL   79 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTT--------EEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEE
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCccc--------eeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCE
Confidence            45677899999999999999999999988531        23345789999999999999999987655432111111  


Q ss_pred             --------HHHHHHHHHHHHHHcCCcEEEEc
Q 045245          207 --------FCEHALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       207 --------F~e~A~k~I~eI~~~Gk~PILVG  229 (251)
                              ++....+.++++++.|+.+|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~  110 (204)
T 2qor_A           80 EFDKYANNFYGTLKSEYDLAVGEGKICLFEM  110 (204)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred             EeHHhCCCeecCCHHHHHHHHHcCCeEEEEE
Confidence                    11112346777788899988864

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.85  E-value=2e-10  Score=103.38  Aligned_cols=100  Identities=20%  Similarity=0.279  Sum_probs=77.9

Q ss_pred             ccchhhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEe-ccCC
Q 045245          119 NLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL-GFVD  197 (251)
Q Consensus       119 ~~~~~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLV-D~~d  197 (251)
                      .+.|..+.......+++|+|+||   ||+||.++|.+.++..+        ....+++|++|+++|.+|++|||+ +..+
T Consensus        91 ~~~Ye~V~~~~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~--------~~~vs~TTR~~R~gE~~G~dY~Fv~s~ee  159 (295)
T 1kjw_A           91 VLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKF--------GSCVPHTTRPKREYEIDGRDYHFVSSREK  159 (295)
T ss_dssp             CCCEEEEEEEECCSCCCEEEEST---THHHHHHHHHHHCTTTE--------ECCCCEECSCCCTTCCBTTTBEECSCHHH
T ss_pred             CCCcceeeeecCCCCCEEEEECC---CHHHHHHHHHhhCccce--------eeeeeecccCCCCccccCceeEecCCHHH
Confidence            34444444455567789999999   79999999999875211        233577999999999999999999 8888


Q ss_pred             CCCccCHHHHHHH----------HHHHHHHHHHcCCcEEEEc
Q 045245          198 PEADYPEEEFCEH----------ALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       198 ~~e~fsag~F~e~----------A~k~I~eI~~~Gk~PILVG  229 (251)
                      |...+..++|+++          .++.|+++.++|+.+||..
T Consensus       160 f~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildi  201 (295)
T 1kjw_A          160 MEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDV  201 (295)
T ss_dssp             HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred             HHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEe
Confidence            7776666666665          4788999999999999964

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.84  E-value=4.2e-10  Score=91.16  Aligned_cols=90  Identities=14%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH----
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE----  206 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~----  206 (251)
                      +++.+++|+||+|||||||++.|+..++         .++-.....|+.|+.+++.++.|++.+...+......++    
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEH   75 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEee
Confidence            5678999999999999999999998875         123334567888888888899998876432211110000    


Q ss_pred             ------HHHHHHHHHHHHHHcCCcEEEEc
Q 045245          207 ------FCEHALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       207 ------F~e~A~k~I~eI~~~Gk~PILVG  229 (251)
                            ++....+.+.+..+.|+.+|+.+
T Consensus        76 ~~~~~~~~~~~~~~i~~~l~~g~~vi~d~  104 (205)
T 3tr0_A           76 ATIYERHYGTEKDWVLRQLKAGRDVLLEI  104 (205)
T ss_dssp             EEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred             eeeecccccchHHHHHHHHHcCCeEEEEE
Confidence                  00111356778888899888876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.74  E-value=3.6e-09  Score=84.79  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +++.|+|+||+||||||+|+.|+++++..+++.|.+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~   39 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKE   39 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence            357899999999999999999999999999999886

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.71  E-value=1.6e-09  Score=92.97  Aligned_cols=93  Identities=12%  Similarity=0.108  Sum_probs=62.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCc-------
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEAD-------  201 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~-------  201 (251)
                      +++++.+++|+||+|||||||.+.|+..++..       .+.-..+++|+.|++.|+.++.|++.+...+...       
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-------~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~   84 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-------DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFL   84 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-------TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-------ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHH
Confidence            56888999999999999999999999887531       1112456788888888899999999875433221       


Q ss_pred             --cC-HHHHHHHHHHHHHHHHHcCCcEEEE
Q 045245          202 --YP-EEEFCEHALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       202 --fs-ag~F~e~A~k~I~eI~~~Gk~PILV  228 (251)
                        .. .+.++...++.+++++++|+..|+.
T Consensus        85 E~~~~~~~~yg~~~~~v~~~l~~G~illLD  114 (219)
T 1s96_A           85 EHAEVFGNYYGTSREAIEQVLATGVDVFLD  114 (219)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHTTTCEEEEE
T ss_pred             HHHHHHhccCCCCHHHHHHHHhcCCeEEEE
Confidence              00 0111111234577777788887776

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.69  E-value=1.1e-09  Score=99.01  Aligned_cols=90  Identities=19%  Similarity=0.269  Sum_probs=69.4

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEe-ccCCCCCccCHHH
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL-GFVDPEADYPEEE  206 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLV-D~~d~~e~fsag~  206 (251)
                      ...+.+++|+|+||   ||+||.++|.++++...-        ..++++|++|+++|.+|++|||+ +.+.+...+..++
T Consensus        95 ~~~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~--------~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~  163 (292)
T 3tvt_A           95 LSINYTRPVIILGP---LKDRINDDLISEYPDKFG--------SCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHL  163 (292)
T ss_dssp             EECSSCCCEEEEST---THHHHHHHHHHHCTTTEE--------CCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC
T ss_pred             ccCCCCCeEEEeCC---CHHHHHHHHHHhChhhcc--------ccccCCccCCcCCccCCccccccCCHHHHHHHHhcCc
Confidence            44466788999999   499999999999874322        23577999999999999999999 4444555444444


Q ss_pred             HHHH----------HHHHHHHHHHcCCcEEEE
Q 045245          207 FCEH----------ALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       207 F~e~----------A~k~I~eI~~~Gk~PILV  228 (251)
                      |+++          .++.|++++++|+.+||.
T Consensus       164 flE~a~~~gn~YGT~~~~V~~~~~~gk~viLd  195 (292)
T 3tvt_A          164 FIEAGQYNDNLYGTSVASVREVAEKGKHCILD  195 (292)
T ss_dssp             EEEEEEETTEEEEEEHHHHHHHHHHTCEEEEC
T ss_pred             eEEEEEEccceeEEehHHHHHHHHcCCcEEEe
Confidence            4444          478899999999999994

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.67  E-value=2.4e-09  Score=89.02  Aligned_cols=90  Identities=14%  Similarity=0.152  Sum_probs=58.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH---
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF---  207 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F---  207 (251)
                      +++++++|+||+|||||||++.|...+.. .       .-...+.+|++|+.+|..+++|++++...+...+..+.|   
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~-~-------~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~   73 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSS-I-------FGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEH   73 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTT-T-------EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCch-h-------ceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEee
Confidence            45678999999999999999999987751 1       123345678899999999999998876543322111111   


Q ss_pred             -------HHHHHHHHHHHHHcCCcEEEE
Q 045245          208 -------CEHALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       208 -------~e~A~k~I~eI~~~Gk~PILV  228 (251)
                             +....+.+.+..+.++..++.
T Consensus        74 ~~~~~n~~g~~~~~i~~~~~~~~~~~~~  101 (198)
T 1lvg_A           74 AEFSGNLYGTSKEAVRAVQAMNRICVLD  101 (198)
T ss_dssp             EEETTEEEEEEHHHHHHHHHTTCEEEEE
T ss_pred             eeecCccCCCCHHHHHHHHHcCCcEEEE
Confidence                   111245566666777777764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.51  E-value=3.1e-08  Score=98.33  Aligned_cols=92  Identities=20%  Similarity=0.274  Sum_probs=73.7

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEe-ccCCCCCccCHHH
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL-GFVDPEADYPEEE  206 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLV-D~~d~~e~fsag~  206 (251)
                      +....+++|+|+||+   |+||.++|.+.++..+        ..-.+++|++|+++|.+|++|||+ +..+|...+..++
T Consensus       526 ~~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~--------~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~  594 (721)
T 2xkx_A          526 MEVHYARPIIILGPT---KDRANDDLLSEFPDKF--------GSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHK  594 (721)
T ss_pred             ccCCCCCEEEEECCC---HHHHHHHHHHhCccce--------eecccccccCCCCCccCCceeEEecCHHHHHHHHhcCC
Confidence            344567899999994   9999999999875211        123577999999999999999999 8888887766666


Q ss_pred             HHHH----------HHHHHHHHHHcCCcEEEEcc
Q 045245          207 FCEH----------ALRAIDKIIENGHLHIIVGG  230 (251)
Q Consensus       207 F~e~----------A~k~I~eI~~~Gk~PILVGG  230 (251)
                      |+++          .++.|++++++|+.+||..-
T Consensus       595 flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~  628 (721)
T 2xkx_A          595 FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVS  628 (721)
T ss_pred             ceEEEEECCccceeeHHHHHHHHHCCCcEEEeCC
Confidence            6655          47889999999999999763

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.50  E-value=2.6e-07  Score=73.24  Aligned_cols=35  Identities=11%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceE--ecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAI--NSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI--S~Ds~  167 (251)
                      +++|+|+|++||||||+|+.|+++++...+  +.|.+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~   39 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL   39 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence            468999999999999999999999986544  56654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.49  E-value=7.6e-08  Score=80.60  Aligned_cols=99  Identities=14%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHH-HhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH-
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLA-IHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE-  206 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LA-k~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~-  206 (251)
                      ..+++.+++|+||+|||||||++.|+ ..++.         ++.+.+++|++|+.++..+++|++.+...+......+. 
T Consensus        23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~   93 (231)
T 3lnc_A           23 LKSVGVILVLSSPSGCGKTTVANKLLEKQKNN---------IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEI   93 (231)
T ss_dssp             CEECCCEEEEECSCC----CHHHHHHC----C---------EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC---------cccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCce
Confidence            34667899999999999999999999 76542         24566889999999999999998876443221100000 


Q ss_pred             ---------HHHHHHHHHHHHHHcCCcEEEE---cccHHHHH
Q 045245          207 ---------FCEHALRAIDKIIENGHLHIIV---GGSNTYIE  236 (251)
Q Consensus       207 ---------F~e~A~k~I~eI~~~Gk~PILV---GGTglYlk  236 (251)
                               ++....+.+++..++|+.+|+.   .|...+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~  135 (231)
T 3lnc_A           94 IEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFME  135 (231)
T ss_dssp             EEEEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHHHH
T ss_pred             ehhhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHH
Confidence                     0001124466777778887773   44444443

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.47  E-value=1e-07  Score=74.95  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHH-hcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAI-HFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk-~l~~~VIS~Ds~  167 (251)
                      +++|+|+||+||||||+|+.|++ .++..+++.|.+
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~   37 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY   37 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH
Confidence            46899999999999999999999 688889988764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.44  E-value=1.5e-07  Score=75.24  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=34.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++++++|+|+|++||||||+++.|+++++..+++.|.+
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~   39 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAF   39 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHH
Confidence            35678999999999999999999999999999998875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.41  E-value=3.1e-08  Score=79.96  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCc---------
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEAD---------  201 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~---------  201 (251)
                      +++.+++|+||+||||||+++.|++.+...   .+     ......++.|..++..++.+.+.+...+...         
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~---~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTS---YK-----YSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEY   75 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCC---EE-----CCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCC---eE-----EecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEE
Confidence            567899999999999999999999887211   11     0123345666656666777777653221100         


Q ss_pred             --cCHHHHHHHHHHHHHHHHHcCCcEEEEcc
Q 045245          202 --YPEEEFCEHALRAIDKIIENGHLHIIVGG  230 (251)
Q Consensus       202 --fsag~F~e~A~k~I~eI~~~Gk~PILVGG  230 (251)
                        +. +..+....+.+++..+.|+.+|+.+.
T Consensus        76 ~~~~-~~~~g~~~~~i~~~l~~g~~vv~d~~  105 (207)
T 2j41_A           76 AEYV-GNYYGTPVQYVKDTMDEGHDVFLEIE  105 (207)
T ss_dssp             EEET-TEEEEEEHHHHHHHHHTTCEEEEECC
T ss_pred             EeEC-CeecCCCHHHHHHHHHcCCeEEEEEC
Confidence              00 00000123456666677887777653

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.41  E-value=1.9e-07  Score=73.91  Aligned_cols=37  Identities=24%  Similarity=0.472  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++++|+|.|++||||||+|+.|++.++..+++.|.+
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~   40 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL   40 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHH
Confidence            3457999999999999999999999999999998764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.40  E-value=2.2e-07  Score=72.52  Aligned_cols=34  Identities=12%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+||+||||||+++.|+++++..+++.|.+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~   35 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSF   35 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCccc
Confidence            4899999999999999999999999999999875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.39  E-value=2.1e-07  Score=76.07  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++++|+|+|++||||||+|+.|++.++..+++.|.+
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~   52 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDAL   52 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcC
Confidence            3467999999999999999999999999999999876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.37  E-value=9.6e-08  Score=75.69  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC-----CceEecC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS-----GEAINSN  165 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~D  165 (251)
                      ++|+|+|++||||||+++.|+++++     ...++.|
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~   38 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG   38 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence            5899999999999999999999987     4455443

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.36  E-value=2.1e-07  Score=74.50  Aligned_cols=38  Identities=16%  Similarity=0.444  Sum_probs=34.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.++++|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~   43 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDL   43 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHH
Confidence            35678999999999999999999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.35  E-value=2.6e-07  Score=73.27  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++++|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~   37 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL   37 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence            357899999999999999999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.35  E-value=4.2e-07  Score=72.25  Aligned_cols=38  Identities=13%  Similarity=0.380  Sum_probs=34.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..++.+++|+||+||||||+++.|++.++..+++.|.+
T Consensus         5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~   42 (175)
T 1knq_A            5 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFL   42 (175)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGG
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccc
Confidence            35578999999999999999999999999999998875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=3.1e-07  Score=75.38  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=33.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ...+++.|+|+||+||||||+++.|++.++..+++.|.+
T Consensus        21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~   59 (199)
T 3vaa_A           21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWY   59 (199)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHH
Confidence            345678999999999999999999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.31  E-value=1.9e-07  Score=82.67  Aligned_cols=85  Identities=13%  Similarity=0.151  Sum_probs=52.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc--CCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF--SGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF  207 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l--~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F  207 (251)
                      ..++.+|+|+||+||||||+|+.|++++  +..+||+|.+.  ..+      |...++..  .  +.  +....+ .+.|
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R--~~~------~~~~~~~~--~--~~--~~a~~~-~~~~   94 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK--QQH------PNFDELVK--L--YE--KDVVKH-VTPY   94 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH--TTS------TTHHHHHH--H--HG--GGCHHH-HHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH--Hhc------hhhHHHHH--H--cc--chhhhh-hhHH
Confidence            3567899999999999999999999998  56788887642  100      11111000  0  00  000011 2445


Q ss_pred             HHH-HHHHHHHHHHcCCcEEEEc
Q 045245          208 CEH-ALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       208 ~e~-A~k~I~eI~~~Gk~PILVG  229 (251)
                      +.. ..+.+++.++.|+.+||.|
T Consensus        95 ~~~~~~~~v~~~l~~g~~vIld~  117 (287)
T 1gvn_B           95 SNRMTEAIISRLSDQGYNLVIEG  117 (287)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEC
Confidence            554 4567788888899988854

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.31  E-value=1.5e-07  Score=75.42  Aligned_cols=37  Identities=19%  Similarity=0.433  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +++++|+|+|++||||||+|+.|+++++..+++.|.+
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~   46 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGEL   46 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHH
Confidence            3457999999999999999999999999999998875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.30  E-value=3.4e-07  Score=72.30  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=32.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++.+|+|+||+||||||+++.|++.++..++..|.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~   38 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE   38 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHH
Confidence            356899999999999999999999999888888754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.30  E-value=2.4e-07  Score=74.11  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.|+|+||+||||||+|+.||++++...++.|.+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~   38 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFL   38 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHH
Confidence            4799999999999999999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.30  E-value=3.4e-07  Score=73.08  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=32.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++..|+|.|++||||||+++.|+++++..+++.|.+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~   38 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDI   38 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence            3567899999999999999999999999999988754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.29  E-value=5.2e-07  Score=73.37  Aligned_cols=38  Identities=21%  Similarity=0.367  Sum_probs=34.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..++++|+|+|++||||||+++.|+++++..++++|.+
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~   49 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDL   49 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHH
Confidence            35568999999999999999999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.28  E-value=4e-07  Score=73.19  Aligned_cols=37  Identities=11%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..++.+|+|+|++||||||+++.|++. +..+++.|.+
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~   41 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDAL   41 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHH
Confidence            356789999999999999999999998 9999999975

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.28  E-value=5.5e-07  Score=73.48  Aligned_cols=38  Identities=18%  Similarity=0.324  Sum_probs=34.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..++.+|+|+|++||||||+|+.|++.++..+++.|.+
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~   54 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGEL   54 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHH
Confidence            35667999999999999999999999999999998764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.27  E-value=3.8e-07  Score=73.08  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=31.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+|++||||||+|+.|+++++..+++.|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~   36 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVA   36 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchH
Confidence            4699999999999999999999999999999975

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.27  E-value=5.2e-07  Score=73.38  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHh-cCCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIH-FSGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~-l~~~VIS~Ds~  167 (251)
                      ..++++.|+|+|++||||||+++.|+++ ++..++++|.+
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~   45 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL   45 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence            3456789999999999999999999999 79999999865

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.26  E-value=5.2e-07  Score=69.45  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=29.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+||+||||||+|+.| ++++..+++.|.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~   34 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDV   34 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHH
Confidence            58999999999999999999 9999999987643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.25  E-value=9.9e-07  Score=74.39  Aligned_cols=58  Identities=22%  Similarity=0.303  Sum_probs=44.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEecc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGF  195 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~  195 (251)
                      .+++.+++|+||+|||||||++.|+..++      ..+.+  +.++.|+.|.+.++.++.|.+.+.
T Consensus        20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~p------G~i~~--g~~~~~~~~~~~~~~~i~~~~~~~   77 (218)
T 1z6g_A           20 MNNIYPLVICGPSGVGKGTLIKKLLNEFP------NYFYF--SVSCTTRKKREKEKEGVDYYFIDK   77 (218)
T ss_dssp             --CCCCEEEECSTTSSHHHHHHHHHHHST------TTEEE--CCCEECSCCCSSCCBTTTBEECCH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhCC------CcEEE--eecccCCCCCcccccCCeEEECCH
Confidence            36678999999999999999999998773      22222  667788888777888898888764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.24  E-value=4.3e-07  Score=71.46  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=31.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+|++||||||+|+.|+++++..+++.|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~   36 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIF   36 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHH
Confidence            5799999999999999999999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.23  E-value=8.1e-07  Score=75.80  Aligned_cols=42  Identities=19%  Similarity=0.315  Sum_probs=34.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCc----------eEecCCcceecc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGE----------AINSNKIQVYKG  172 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~----------VIS~Ds~QvYk~  172 (251)
                      +..++.+|+|+|++||||||+|+.|+++++..          ++++|.+  |+.
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~--~~~   69 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF--YRV   69 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG--BCC
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc--ccc
Confidence            34566799999999999999999999999976          7999986  554

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.23  E-value=6e-07  Score=73.78  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=33.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ  168 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q  168 (251)
                      ++.+|+|.||+||||||+++.|++.++...+..|.+.
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~   40 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY   40 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCccee
Confidence            3468999999999999999999999999999998863

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.22  E-value=7.1e-07  Score=71.45  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=33.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+++.|+|+|++||||||+++.|+++++..+++.|.+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~   45 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL   45 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHH
Confidence            4567899999999999999999999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.22  E-value=5.8e-07  Score=75.05  Aligned_cols=37  Identities=24%  Similarity=0.426  Sum_probs=32.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+++.|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~   41 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDL   41 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHH
Confidence            4567899999999999999999999999999998764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.22  E-value=1.2e-06  Score=75.34  Aligned_cols=37  Identities=27%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +++.+|+|.||+||||||+++.|+++++...+..|.+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i   61 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI   61 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce
Confidence            4567999999999999999999999999988887775

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.20  E-value=1.1e-06  Score=72.17  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=33.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..++.+|+|+||+||||||+++.|++.++...+..|.+
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~   63 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAF   63 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGG
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccccc
Confidence            35678999999999999999999999999888888765

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.20  E-value=1.9e-06  Score=79.95  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=35.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..+++.+|+|+|++||||||+|+.|+++++..+|+.|.+
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~  292 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL  292 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence            445678999999999999999999999999999998875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.19  E-value=4.3e-07  Score=73.70  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      .+.++++|+|+|++||||||+++.|+++++...+++|
T Consensus         6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~   42 (212)
T 2wwf_A            6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK   42 (212)
T ss_dssp             CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            4456789999999999999999999999876555544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.19  E-value=2.2e-06  Score=73.52  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~  167 (251)
                      ...++.+|+|+||+||||||+|+.|++.++  ..++..|.+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence            345678999999999999999999999997  346666654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.19  E-value=9.3e-07  Score=72.25  Aligned_cols=39  Identities=28%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~  167 (251)
                      +.+++.+++|.||+|||||||++.|+..++  ..+++.|.+
T Consensus         2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~   42 (211)
T 3asz_A            2 SAPKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY   42 (211)
T ss_dssp             ---CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence            346678999999999999999999999988  788998875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.19  E-value=7.2e-07  Score=70.70  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds  166 (251)
                      +++|+|+||+||||||+++.|+++++     ..+++.|.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~   41 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS   41 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence            46899999999999999999999998     77888764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.18  E-value=1.1e-06  Score=75.24  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=34.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.++.+|+|+||+||||||+|+.|+++++..++++|.+
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~   63 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDL   63 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHH
Confidence            45678999999999999999999999999999998764

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.16  E-value=3.9e-06  Score=70.61  Aligned_cols=34  Identities=15%  Similarity=0.144  Sum_probs=29.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAIN  163 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS  163 (251)
                      ..+.++|+|+||+||||||+++.||++++...+.
T Consensus         3 ~m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            3 AMKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             ---CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             CCCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            3456799999999999999999999999999885

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.15  E-value=1.5e-06  Score=71.19  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=34.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc-CCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF-SGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~Ds~  167 (251)
                      +++.+|+|+||+||||||+++.|++.+ +..++++|.+
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~   56 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF   56 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcc
Confidence            556899999999999999999999998 7899999986

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.14  E-value=1.3e-06  Score=72.33  Aligned_cols=36  Identities=14%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++..|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~   38 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDM   38 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHH
Confidence            456899999999999999999999999999998764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.14  E-value=1.3e-06  Score=71.66  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|+||+||||||+|+.|+++++..++++|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~   34 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDM   34 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHH
Confidence            588999999999999999999999999998764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.14  E-value=1.6e-06  Score=75.04  Aligned_cols=39  Identities=28%  Similarity=0.452  Sum_probs=34.7

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ....++++|+|.||+||||+|.|..|+++++...||...
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGd   62 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGD   62 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHH
Confidence            345788999999999999999999999999999998743

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.13  E-value=1.4e-06  Score=71.58  Aligned_cols=33  Identities=15%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|+||+||||||+|+.|+++++..++++|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~   34 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDM   34 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence            588999999999999999999999999999764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.13  E-value=3.2e-06  Score=69.92  Aligned_cols=56  Identities=21%  Similarity=0.253  Sum_probs=41.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEec
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLG  194 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD  194 (251)
                      ..++.+++|+||+|||||||++.|+..+....         -..++.+++|...++.++.|.+.+
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~---------~~~~~~~~~~~~~~~~~i~~~~q~   72 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH---------FSVSATTRAPRPGEVDGVDYHFID   72 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHSTTCE---------ECCCEESSCCCTTCCBTTTBEECC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCCceE---------EcccccccCCcccccCCCeeEecC
Confidence            46778999999999999999999998875111         123566777766677788887754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.12  E-value=3.6e-06  Score=73.81  Aligned_cols=40  Identities=28%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKG  172 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~  172 (251)
                      .++.+|+|.||+||||||+++.|+++++...++.|.+  |+.
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~--~r~   46 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM--YRI   46 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH--HHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH--HHH
Confidence            4567999999999999999999999999999998876  554

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.12  E-value=1.6e-06  Score=68.65  Aligned_cols=35  Identities=20%  Similarity=0.444  Sum_probs=32.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ...|+|+|++||||||+|+.|+++++.+++..|.+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~   41 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMI   41 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence            46899999999999999999999999999999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.11  E-value=1.4e-06  Score=70.30  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=32.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+|++||||||+++.|++.++..+++.|.+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~   36 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLL   36 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCceeccchH
Confidence            3899999999999999999999999999999976

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.11  E-value=1.5e-06  Score=71.75  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++.+|+|+|++||||||+++.|++ ++..++..|.+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~   37 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADII   37 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHH
Confidence            467999999999999999999998 89999999875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.11  E-value=1.8e-06  Score=67.84  Aligned_cols=33  Identities=12%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~   34 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEE   34 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHH
Confidence            689999999999999999999999999998875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.10  E-value=1.2e-06  Score=72.78  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++++.|+|+||+||||||+++.|+++++...++.|.+
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~   39 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDL   39 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence            3457899999999999999999999999888887754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.07  E-value=1.8e-06  Score=70.13  Aligned_cols=33  Identities=15%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++|+|+|++||||||+++.|++ ++..++++|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~   34 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKL   34 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHH
Confidence            5799999999999999999999 99999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.06  E-value=8e-06  Score=70.38  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh---cCCceE--ecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH---FSGEAI--NSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~---l~~~VI--S~Ds~  167 (251)
                      .++++|+|+|++||||||+|+.|++.   .+..++  +.|.+
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~   43 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI   43 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence            34679999999999999999999998   666666  55543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.04  E-value=2.8e-06  Score=68.45  Aligned_cols=34  Identities=12%  Similarity=0.222  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc-CCceEec
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF-SGEAINS  164 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~  164 (251)
                      .++++|+|.|++||||||+++.|++++ +..++..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~   36 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYL   36 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence            356899999999999999999999998 3556654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.04  E-value=2.5e-06  Score=71.07  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=32.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +..|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l   39 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDM   39 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHH
Confidence            46799999999999999999999999999998765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.04  E-value=3.2e-06  Score=67.10  Aligned_cols=31  Identities=16%  Similarity=0.044  Sum_probs=28.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc---CCceEecC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF---SGEAINSN  165 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~D  165 (251)
                      +|+|.|++||||||+++.|++++   +..++++|
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            68999999999999999999998   78888876

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.03  E-value=1.3e-06  Score=77.74  Aligned_cols=37  Identities=16%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ  168 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q  168 (251)
                      ++.+|+|+||+||||||+|+.|++.++     ..+|++|.+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            567999999999999999999999887     6899999973

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.02  E-value=2.7e-06  Score=67.42  Aligned_cols=31  Identities=19%  Similarity=0.428  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      ++++|+|.|++||||||+|+.|+++++..++
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            5679999999999999999999999998777

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.02  E-value=4.2e-06  Score=78.09  Aligned_cols=77  Identities=17%  Similarity=0.159  Sum_probs=59.6

Q ss_pred             cchhhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCC
Q 045245          120 LVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPE  199 (251)
Q Consensus       120 ~~~~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~  199 (251)
                      +.|-.+.-...+.+++|+|+||+|   +||.++|.++++....+            +|+.|+++|.+|++|||+      
T Consensus       219 ~~YE~V~~~~~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~------------~tr~pR~gE~dG~~Y~Fv------  277 (391)
T 3tsz_A          219 PAYERVVLREAGFLRPVTIFGPIA---DVAREKLAREEPDIYQI------------AKSEPRDAGTDQRSSGII------  277 (391)
T ss_dssp             CSEEEEEEEECSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE------------CCCCCCCSSSCCC--CCC------
T ss_pred             CCcceEECcCCCCCCEEEEECCCH---HHHHHHHHhhCcccccc------------ccCCCCCcccCCccCCcC------
Confidence            334444445567889999999998   89999999988643221            578999999999999998      


Q ss_pred             CccCHHHHHHHHHHHHHHHHHcCCcEEEE
Q 045245          200 ADYPEEEFCEHALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       200 e~fsag~F~e~A~k~I~eI~~~Gk~PILV  228 (251)
                                 .++.|++++++|+.+||.
T Consensus       278 -----------~~~~V~~~~~~Gk~~iLd  295 (391)
T 3tsz_A          278 -----------RLHTIKQIIDQDKHALLD  295 (391)
T ss_dssp             -----------CHHHHHHHHTTTCEEEEC
T ss_pred             -----------cHHHHHHHHHcCCEEEEE
Confidence                       368899999999999993

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.01  E-value=1.5e-06  Score=70.42  Aligned_cols=31  Identities=16%  Similarity=0.260  Sum_probs=26.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGE  160 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~  160 (251)
                      +.++++|+|.|++||||||+++.|+++++..
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3567899999999999999999999988643

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.01  E-value=2.7e-06  Score=69.41  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=30.7

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+|+|.||+||||||+++.|++ +|..++.+|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~   35 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVV   35 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHH
Confidence            6899999999999999999988 89999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.01  E-value=2.8e-06  Score=71.59  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=34.4

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +..-..+|+|+|++||||||+++.|++.++.+++.+|.+
T Consensus         8 ~~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~   46 (192)
T 2grj_A            8 HHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRI   46 (192)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHH
Confidence            344567999999999999999999999999999999987

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.00  E-value=3.7e-06  Score=70.74  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++..|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l   50 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDM   50 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence            4457899999999999999999999999999998753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.98  E-value=5.9e-06  Score=66.11  Aligned_cols=30  Identities=17%  Similarity=0.197  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE  160 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~  160 (251)
                      +++.+++|+||+||||||+++.|+...+..
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g   36 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVP   36 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCC
Confidence            567899999999999999999999986544

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.96  E-value=4.4e-06  Score=69.06  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=30.4

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+|+.|+++++..+++.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~   34 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDM   34 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence            589999999999999999999999999998764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.95  E-value=5e-06  Score=68.24  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=28.7

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++..++.+|+|.||+||||||+++.|++.++
T Consensus        18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345567789999999999999999999999883

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.95  E-value=3.9e-06  Score=71.01  Aligned_cols=37  Identities=19%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++.+|+|.||+||||||+++.|+++++...++.|.+
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i   61 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF   61 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence            3467999999999999999999999998877766544

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.93  E-value=4.7e-06  Score=71.81  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=31.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc-CCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF-SGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~Ds~  167 (251)
                      +++|+|+|++||||||+|+.|++++ +..+++.|.+
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~   37 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY   37 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH
Confidence            4689999999999999999999985 7889999853

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.92  E-value=5e-06  Score=73.02  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +++.+|+|+|++||||||+|+.|+ +++..+|++|.+
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~  108 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHL  108 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHH
Confidence            456899999999999999999999 689999999986

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.91  E-value=4.1e-06  Score=80.68  Aligned_cols=76  Identities=16%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             chhhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC
Q 045245          121 VYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA  200 (251)
Q Consensus       121 ~~~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e  200 (251)
                      .|-.+.-.....+++|+|+||+|+|   |.++|.++++....+           .+|+ |+++|.+|++|||        
T Consensus       212 ~YEeV~~~~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s-----------~~TR-pR~gE~dG~~Y~F--------  268 (468)
T 3shw_A          212 AYERVVLREAGFLRPVTIFGPIADV---AREKLAREEPDIYQI-----------AKSE-PRDAGTDQRSSGI--------  268 (468)
T ss_dssp             SEEEEEEECCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE-----------CCCB-C----------CB--------
T ss_pred             CcceeEcccCCCCCEEEEECCCHHH---HHHHHHHhCCCceee-----------ecCC-CCCcccccccCCc--------
Confidence            3444444556778999999999999   999999888643332           2488 9999999999998        


Q ss_pred             ccCHHHHHHHHHHHHHHHHHcCCcEEEE
Q 045245          201 DYPEEEFCEHALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       201 ~fsag~F~e~A~k~I~eI~~~Gk~PILV  228 (251)
                               ..++.|++++++|+.+||.
T Consensus       269 ---------Ts~~~V~~vl~~Gk~~iLd  287 (468)
T 3shw_A          269 ---------IRLHTIKQIIDQDKHALLD  287 (468)
T ss_dssp             ---------CCHHHHHHHHTTTCEEEEC
T ss_pred             ---------ccHHHHHHHHHCCCeEEEE
Confidence                     2568899999999999993

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.91  E-value=7.2e-06  Score=65.92  Aligned_cols=28  Identities=18%  Similarity=0.133  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ++++|+|.|++||||||+|+.|+++++.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4579999999999999999999999876

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.88  E-value=7.4e-06  Score=68.78  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=30.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+|+.|+++++..+++.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~   34 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGI   34 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHH
Confidence            689999999999999999999999999998764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.87  E-value=9.4e-06  Score=69.14  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      +|+|.||+||||+|.|..|+++++...||...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGd   33 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGD   33 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHH
Confidence            68899999999999999999999999998743

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.86  E-value=7.5e-06  Score=67.72  Aligned_cols=39  Identities=28%  Similarity=0.389  Sum_probs=33.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ  168 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q  168 (251)
                      ..++.+++|+||+|||||||++.|+..++     ...|+.|.+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~   62 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH   62 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence            46678999999999999999999999875     4678888763

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.86  E-value=6.3e-06  Score=67.65  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=32.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.+|+|+|++||||||+++.|++.++..++..|.+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~   37 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAM   37 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChH
Confidence            46899999999999999999999999999999876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.84  E-value=1.4e-05  Score=67.77  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=33.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCc----------eEecCCcceeccc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGE----------AINSNKIQVYKGL  173 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~----------VIS~Ds~QvYk~l  173 (251)
                      .+++.+|.|.||+|||||||++.|+..++..          ++..|.  +|+.+
T Consensus        22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~--~~~~l   73 (245)
T 2jeo_A           22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR--FYKVL   73 (245)
T ss_dssp             -CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG--GBCCC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc--Ccccc
Confidence            3567899999999999999999999988744          577774  45544

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.84  E-value=9e-06  Score=68.50  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=34.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +++.+|+|+|++||||||+++.|+++++..+++.|.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~   50 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   50 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence            5567899999999999999999999999999999876

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.82  E-value=1.3e-05  Score=64.04  Aligned_cols=28  Identities=18%  Similarity=0.418  Sum_probs=25.5

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      .|+|.|++||||||+++.|+++++..++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~   29 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIF   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence            6899999999999999999999987554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.82  E-value=6.7e-05  Score=60.27  Aligned_cols=83  Identities=12%  Similarity=0.150  Sum_probs=49.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC  208 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~  208 (251)
                      ++..++|.||+|+|||+|++.++..+   +..++-.+.-      ++...    +-....+--++|....-.   ... .
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~------~~~~~----~~~~~~~lLilDE~~~~~---~~~-~  100 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA------SMPLT----DAAFEAEYLAVDQVEKLG---NEE-Q  100 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT------TSCCC----GGGGGCSEEEEESTTCCC---SHH-H
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH------HhhHH----HHHhCCCEEEEeCccccC---hHH-H
Confidence            56789999999999999999999876   3222222111      11100    112334566788765422   122 4


Q ss_pred             HHHHHHHHHHHHcCCc-EEEE
Q 045245          209 EHALRAIDKIIENGHL-HIIV  228 (251)
Q Consensus       209 e~A~k~I~eI~~~Gk~-PILV  228 (251)
                      +...+.++...++|+. .|+.
T Consensus       101 ~~l~~li~~~~~~g~~~iiit  121 (149)
T 2kjq_A          101 ALLFSIFNRFRNSGKGFLLLG  121 (149)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHHHHcCCcEEEEE
Confidence            4556667777777776 4553

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.81  E-value=1.6e-05  Score=63.57  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds  166 (251)
                      .++..|+|+|++||||||+++.|++.+   +.+++..|.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~   41 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   41 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence            456789999999999999999999987   767776654

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.80  E-value=3e-05  Score=66.97  Aligned_cols=35  Identities=9%  Similarity=0.114  Sum_probs=31.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.+|+|+|++||||||+|+.||++++.+++..|-+
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~   48 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDIL   48 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHH
Confidence            57999999999999999999999999999887654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.80  E-value=9.6e-06  Score=71.22  Aligned_cols=35  Identities=14%  Similarity=0.322  Sum_probs=32.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +..|+|+|++||||||+++.|++.++...+..|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~   82 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTL   82 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHH
Confidence            67899999999999999999999999999988765

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.79  E-value=1.2e-05  Score=64.82  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCC-ceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSG-EAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~-~VIS~Ds~  167 (251)
                      +.+++|+||+||||||+++.|++..+. ..++.|.+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~   37 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII   37 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccch
Confidence            368999999999999999999987776 56666654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.74  E-value=9.4e-05  Score=59.79  Aligned_cols=91  Identities=14%  Similarity=0.076  Sum_probs=49.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC---C--ceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS---G--EAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE  206 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~---~--~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~  206 (251)
                      .+..++|.||+|+|||++|+.+++.+.   .  ..++++.+  ...+.-     .........-.++|..+.-.  ....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~vliiDe~~~~~--~~~~  121 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH--ASISTA-----LLEGLEQFDLICIDDVDAVA--GHPL  121 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG--GGSCGG-----GGTTGGGSSEEEEETGGGGT--TCHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH--HHHHHH-----HHHhccCCCEEEEecccccc--CCHH
Confidence            567899999999999999999998764   2  23333222  111100     00111223446677654221  1122


Q ss_pred             HHHHHHHHHHHHHHcCCcEEEEccc
Q 045245          207 FCEHALRAIDKIIENGHLHIIVGGS  231 (251)
Q Consensus       207 F~e~A~k~I~eI~~~Gk~PILVGGT  231 (251)
                      +.+.....++...+.+...+|+.++
T Consensus       122 ~~~~l~~~l~~~~~~~~~~ii~~~~  146 (242)
T 3bos_A          122 WEEAIFDLYNRVAEQKRGSLIVSAS  146 (242)
T ss_dssp             HHHHHHHHHHHHHHHCSCEEEEEES
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3344455666666666663554433

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.69  E-value=2.6e-05  Score=68.61  Aligned_cols=36  Identities=11%  Similarity=0.043  Sum_probs=30.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      .+.++.++|.||||+|||++|+.+|++++..++..+
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~   68 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS   68 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            455678999999999999999999999998766654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.67  E-value=2.2e-05  Score=63.18  Aligned_cols=29  Identities=31%  Similarity=0.453  Sum_probs=25.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+|+|.|++||||||+++.|++.++
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999999875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.66  E-value=3.3e-05  Score=68.52  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQ  168 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~Q  168 (251)
                      .++.+|+|+||+|||||||++.|+..++       ..++++|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~  122 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence            5668999999999999999999998765       4577888763

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.64  E-value=1.8e-05  Score=67.67  Aligned_cols=30  Identities=23%  Similarity=0.145  Sum_probs=25.4

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      |..+++.|+|.|++||||||+++.|++.+.
T Consensus         2 ~~m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            2 NAMTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            446678999999999999999999999885

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.64  E-value=3.5e-05  Score=68.79  Aligned_cols=39  Identities=18%  Similarity=0.231  Sum_probs=32.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceE-ecCCcc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAI-NSNKIQ  168 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VI-S~Ds~Q  168 (251)
                      ..++.+|+|+||+|||||||++.|++.++       ..++ +.|.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            45678999999999999999999998774       3445 999973

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.60  E-value=2.7e-05  Score=64.35  Aligned_cols=30  Identities=20%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+|+|.|++||||||+++.|++.++
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            446678999999999999999999999876

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.60  E-value=6.6e-05  Score=57.81  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+..++|.||+|+|||++|+.+++.+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999999986

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.60  E-value=5.2e-05  Score=63.13  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..++.++|.||+|+|||++|+.++++++..++..+
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~   71 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA   71 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            44567999999999999999999999987666543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.60  E-value=5.5e-05  Score=58.63  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+..++|.||+|+|||++|+.+++.+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999999987

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.57  E-value=5.1e-05  Score=69.32  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=32.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQ  168 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~Q  168 (251)
                      ..++.+|.|+||+||||||+++.|+..+.       ..+++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            45667999999999999999999988764       4578999874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.56  E-value=2.4e-05  Score=68.38  Aligned_cols=32  Identities=16%  Similarity=0.179  Sum_probs=25.4

Q ss_pred             hccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          127 TMNFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       127 ~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+|..+++.|+|.|++||||||+++.|++.+.
T Consensus        21 ~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           21 QSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             -----CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34556788999999999999999999999885

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.56  E-value=6.8e-05  Score=63.27  Aligned_cols=34  Identities=26%  Similarity=0.228  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ++-++|.||+|+|||++|+.++..++..++..|.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~   78 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG   78 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence            4569999999999999999999999877666554

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.54  E-value=7.9e-05  Score=63.30  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ..++-++|.||+|+|||++|+.+++.++..++..+.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~   84 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG   84 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence            456779999999999999999999999987665543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.53  E-value=8.6e-05  Score=61.15  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc---CCc--eEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF---SGE--AINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~--VIS~Ds~  167 (251)
                      +..++.+++|+||+||||||+++.|+..+   +..  +++.|.+
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            45677899999999999999999999865   443  3455654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.52  E-value=2.5e-05  Score=67.93  Aligned_cols=91  Identities=16%  Similarity=0.128  Sum_probs=48.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccc-cccCCCCccccCC-CCeEEecc-CCCCCc--cCHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLD-IATNKVTASERQG-VPHHLLGF-VDPEAD--YPEE  205 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ls-IgTakP~~eEr~g-vpHhLVD~-~d~~e~--fsag  205 (251)
                      .+++.|+|.||+||||||+++.|++.++...++.       +.+ +.|+.|+..+... +...+.+. .++...  +=++
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~-------g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a   95 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPA-------GRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFA   95 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGG-------TCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhcccc-------ceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4678999999999999999999999885321111       011 1345554322210 11112221 111110  1133


Q ss_pred             HHHHHHHHHHHHHHHcCCcEEEE
Q 045245          206 EFCEHALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       206 ~F~e~A~k~I~eI~~~Gk~PILV  228 (251)
                      +.+++..+.|...+++|+.+|..
T Consensus        96 ~R~~~~~~~i~p~l~~g~~VI~D  118 (227)
T 3v9p_A           96 GRREHLALVIEPALARGDWVVSD  118 (227)
T ss_dssp             HHHHHHHHTHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEe
Confidence            44445556678888889887774

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.50  E-value=8.5e-05  Score=63.31  Aligned_cols=35  Identities=23%  Similarity=0.169  Sum_probs=30.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ...+..++|.||+|+|||++|+.+++..+..++..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            45667899999999999999999999998776554

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.47  E-value=0.00011  Score=64.45  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ...++.++|.||+|+|||++|+.+++..+...+..+.
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~   82 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG   82 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence            3566789999999999999999999999887776653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.45  E-value=9.9e-05  Score=63.21  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      .++.++|.||+|+|||++|+.+++.++...+..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i   85 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI   85 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            457899999999999999999999998766554

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.44  E-value=6.5e-05  Score=60.09  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++..++|.||+|+|||||++.++..+
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            446899999999999999999998876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.44  E-value=4e-05  Score=62.13  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++|+|.|++||||||+++.|++.++
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999885

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.43  E-value=8.9e-05  Score=62.88  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      .+..++|.||+|+|||++|+.+++.++..++..|
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~   82 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            4567899999999999999999999987665544

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.41  E-value=5e-05  Score=64.90  Aligned_cols=36  Identities=19%  Similarity=0.131  Sum_probs=27.8

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC-CceEe
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS-GEAIN  163 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-~~VIS  163 (251)
                      +...+++.|+|.|+.||||||+++.|++.++ ..++.
T Consensus        19 ~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           19 SEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             ccccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            3446678999999999999999999999994 44553

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.38  E-value=0.00012  Score=63.88  Aligned_cols=97  Identities=19%  Similarity=0.104  Sum_probs=51.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccccCCCCcc----ccCCCCeEEeccCCCCCccCH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIATNKVTAS----ERQGVPHHLLGFVDPEADYPE  204 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIgTakP~~e----Er~gvpHhLVD~~d~~e~fsa  204 (251)
                      .+..++|.||+|+|||++|+.+++.+   +..++..+.-.....+.-.......+    ......--++|..+.-..  .
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~--~  113 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG--K  113 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT--C
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC--C
Confidence            45789999999999999999999977   55544333221111110000000000    011245677886653221  1


Q ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEccc
Q 045245          205 EEFCEHALRAIDKIIENGHLHIIVGGS  231 (251)
Q Consensus       205 g~F~e~A~k~I~eI~~~Gk~PILVGGT  231 (251)
                      ....+.....++...+.++. ||++++
T Consensus       114 ~~~~~~l~~~l~~~~~~~~~-iii~~~  139 (324)
T 1l8q_A          114 ERTQIEFFHIFNTLYLLEKQ-IILASD  139 (324)
T ss_dssp             HHHHHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             hHHHHHHHHHHHHHHHCCCe-EEEEec
Confidence            12333445556666665554 555555

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.38  E-value=0.00011  Score=65.54  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      .+..++|.||||+|||++|+.||+.++.+++..|.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~   84 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADA   84 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence            45678999999999999999999999887776654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.38  E-value=6.8e-05  Score=60.55  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=26.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      +++.+++|.||+|||||||++.+..  +..+++.|.
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~   40 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDF   40 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHH
Confidence            5678999999999999999997542  234555554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.33  E-value=0.00022  Score=61.02  Aligned_cols=27  Identities=22%  Similarity=0.285  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+..++|.||+|+|||++|+.+++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            445679999999999999999999987

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.31  E-value=0.00012  Score=64.32  Aligned_cols=36  Identities=17%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      -...+.|.||+||||||+|+.|+++++...|++|.+
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdl   42 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDM   42 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHH
Confidence            345789999999999999999999999999998653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.31  E-value=0.00016  Score=61.67  Aligned_cols=28  Identities=14%  Similarity=0.207  Sum_probs=26.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.|+|.||+||||||+++.|++.++
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            5678999999999999999999999986

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.30  E-value=0.00021  Score=63.04  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..++-++|.||+|+|||++|+.+|++.+..++..+
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~   83 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS   83 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence            34577999999999999999999999998776654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.28  E-value=0.00017  Score=64.52  Aligned_cols=36  Identities=28%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+..++|.||||+|||++|+.|++.++..++..|..
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~  106 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDAT  106 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecch
Confidence            345689999999999999999999998777665543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.26  E-value=0.00016  Score=65.07  Aligned_cols=38  Identities=16%  Similarity=0.174  Sum_probs=31.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~  167 (251)
                      ..++.+++|+||+|||||||++.|+..+.       ..+++.|.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            46788999999999999999999988653       346777765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.24  E-value=0.00061  Score=67.10  Aligned_cols=108  Identities=19%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccccCCCCccccCCCC--eEEeccCCCCCccCHHHHHH
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIATNKVTASERQGVP--HHLLGFVDPEADYPEEEFCE  209 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvp--HhLVD~~d~~e~fsag~F~e  209 (251)
                      .+++.||||+|||++|+.|++.+   +..++..|.-. |.+....+...-.+.....+  -.|+|..+--.        .
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~-~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~--------~  593 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE-YMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAH--------P  593 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG-GCSSCCCC---CHHHHHHCSSSEEEEECGGGSC--------H
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh-cccccccccchhhHHHHhCCCeEEEEeCccccC--------H
Confidence            69999999999999999999987   34455444322 22211111111111111112  36777664221        2


Q ss_pred             HHHHHHHHHHHcCC------------cEEEEcccH-------HHHHHHHcCCchhhhcccC
Q 045245          210 HALRAIDKIIENGH------------LHIIVGGSN-------TYIEALVEDSIINFRANYD  251 (251)
Q Consensus       210 ~A~k~I~eI~~~Gk------------~PILVGGTg-------lYlkaLl~g~~~~~~~~~~  251 (251)
                      .+...+.++++.|.            ..+|+..|+       ...+.+...+.|+|+-|+|
T Consensus       594 ~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~  654 (758)
T 3pxi_A          594 DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRID  654 (758)
T ss_dssp             HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSS
T ss_pred             HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCC
Confidence            34455555555543            224443333       5666677778888887763

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.24  E-value=8.2e-05  Score=62.80  Aligned_cols=33  Identities=27%  Similarity=0.238  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ++-++|.||+|+|||++|+.++++.+..++..+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~   76 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG   76 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence            445889999999999999999999886655543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.23  E-value=0.00029  Score=59.28  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=26.4

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      -++|.||+|+|||||++.++...+...+..+
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~   81 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPFITAS   81 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            3999999999999999999999876655544

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.23  E-value=0.00027  Score=59.44  Aligned_cols=28  Identities=18%  Similarity=0.245  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      +++.|+|.|+.||||||+++.|++.++.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~   28 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3578999999999999999999999953

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.22  E-value=0.00022  Score=62.13  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      .....++|.||+|+|||++|+.+++.++..++..
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            4455789999999999999999999998765544

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.21  E-value=0.00021  Score=56.58  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +..++|.||+|+|||++++.+++.++
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999999998874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.21  E-value=0.00021  Score=62.91  Aligned_cols=38  Identities=21%  Similarity=0.310  Sum_probs=32.4

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      +..|+++-++|.||+|+|||++|..|++.+...+++.+
T Consensus        53 ~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fa   90 (212)
T 1tue_A           53 KGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV   90 (212)
T ss_dssp             HTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC
T ss_pred             hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence            34577778999999999999999999999988777654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00027  Score=67.12  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=33.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..+.++=+++.||+|+|||.+|+++|.+++..++..+.-
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~  240 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS  240 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence            445677899999999999999999999999887776543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00028  Score=67.14  Aligned_cols=38  Identities=21%  Similarity=0.226  Sum_probs=33.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ..+.++=|++.||+|+|||.+|+++|.+.+..+++.+.
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~  248 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA  248 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence            45667889999999999999999999999988777654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.20  E-value=0.00032  Score=66.40  Aligned_cols=36  Identities=17%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++.++|+||+|+|||++|+.++++++..++..+.-
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s  111 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS  111 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence            457899999999999999999999999887776543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.17  E-value=0.0003  Score=61.59  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=26.8

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ++|.||+|+|||||++.||...+...+..+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g   77 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVKG   77 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEEc
Confidence            9999999999999999999998876655443

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.16  E-value=0.00025  Score=57.39  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.++|.||+|+|||+||+.++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999999876

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.15  E-value=0.00034  Score=62.33  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc-CCceEec
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF-SGEAINS  164 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~  164 (251)
                      ..++-++|.||+|+|||++|+.+|++. +..++..
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i   77 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI   77 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEE
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEE
Confidence            345789999999999999999999998 5555443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.15  E-value=0.00034  Score=62.93  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..++.++|.||+|+|||++|+.+|+..+..++..+
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~  149 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS  149 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence            45678999999999999999999999987766543

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.14  E-value=0.00027  Score=60.01  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ++|.|++|||||++|.+|+++ +.+++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yi   29 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYI   29 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEE
Confidence            789999999999999999988 6555543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00032  Score=66.81  Aligned_cols=38  Identities=29%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ..+.++=|++.||+|+|||.+|+++|.+.+..++..+.
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~  248 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA  248 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence            45667889999999999999999999999988776543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.13  E-value=0.00026  Score=57.48  Aligned_cols=27  Identities=30%  Similarity=0.477  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+++.+++|.||+|||||||++.|+..
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            367789999999999999999999874

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.11  E-value=0.00042  Score=64.44  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCcce
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKIQV  169 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~Qv  169 (251)
                      ..++-+++.||||+|||++|+.+|+.++  ...+..+.-.+
T Consensus        61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~  101 (456)
T 2c9o_A           61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV  101 (456)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred             CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence            3456799999999999999999999998  66666554433

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.10  E-value=0.00029  Score=55.42  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=21.4

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++|.||+|+|||++|+.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999875

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.09  E-value=0.00044  Score=62.51  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=30.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      .++-++|.||+|+|||++|+.++++++..++..+.
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~  181 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA  181 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence            45789999999999999999999999988776654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.09  E-value=0.00036  Score=59.63  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=22.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++|.||+|+|||++|+.+++.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHc
Confidence            4799999999999999999999873

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.09  E-value=0.00028  Score=67.86  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      .++.+|+++|++||||||+|++|++.++     ..+++.|.+
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~   74 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY   74 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence            4567999999999999999999999884     346788864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.09  E-value=0.0004  Score=62.71  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..++-++|.||+|+|||++|+.+|+.++..++..+
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~  116 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS  116 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence            33456899999999999999999999998776654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.09  E-value=0.00039  Score=60.97  Aligned_cols=30  Identities=23%  Similarity=0.381  Sum_probs=26.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ...++.++|.||+|+|||++|+.+++.++.
T Consensus        67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             CCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            344578999999999999999999999874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.08  E-value=0.00049  Score=59.07  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=26.4

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      -++|.||+|+|||||++.|+...+...+..+
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~  105 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEARVPFITAS  105 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence            3999999999999999999999876655544

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.08  E-value=0.00031  Score=55.06  Aligned_cols=27  Identities=22%  Similarity=0.205  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .....|+|.||+|+|||++|+.+++..
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            344568999999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.07  E-value=0.0003  Score=59.15  Aligned_cols=27  Identities=19%  Similarity=0.159  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++..|+|.||+||||||+++.|+..
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            366789999999999999999999887

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.07  E-value=0.00048  Score=68.57  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds  166 (251)
                      .++.+|+|+|++||||||+|+.|++++   +...+..|.
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg   88 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   88 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence            367899999999999999999999998   777777764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.05  E-value=0.00029  Score=61.02  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+..++|+||+|+|||++++.+++.+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999887

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.05  E-value=0.00045  Score=64.27  Aligned_cols=36  Identities=33%  Similarity=0.448  Sum_probs=31.9

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAIN  163 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS  163 (251)
                      ...+++..++|.||+|+|||||++.|+..+++.++.
T Consensus       164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            456788899999999999999999999998887765

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.05  E-value=0.00048  Score=60.30  Aligned_cols=27  Identities=30%  Similarity=0.235  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+..++|+||+|+|||++|+.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            445689999999999999999999876

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.04  E-value=0.00044  Score=59.85  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=31.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      -...|.|+|..||||||+++.|++ +|.++|.+|.+
T Consensus         8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~i   42 (210)
T 4i1u_A            8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLI   42 (210)
T ss_dssp             SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHH
Confidence            346799999999999999999988 99999999985

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.0004  Score=65.85  Aligned_cols=38  Identities=29%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ..+.++=+++.||+|+|||.+|+++|.+.+..+++.+.
T Consensus       178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~  215 (405)
T 4b4t_J          178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG  215 (405)
T ss_dssp             TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred             CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence            45566789999999999999999999999988777654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.04  E-value=0.0004  Score=59.96  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc------CCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF------SGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l------~~~VIS~D  165 (251)
                      ..+..++|.||+|+|||+|++.+++.+      +..++..+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            456789999999999999999999977      55555443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.03  E-value=0.00038  Score=56.12  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++.+++|.||+|+|||||++.++...
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999998543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.02  E-value=0.00042  Score=61.70  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEA  161 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~V  161 (251)
                      .+..++|.||+|+||||||+.++..++..+
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            346789999999999999999999987643

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.02  E-value=0.00042  Score=60.68  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|+|||||||||+.+.|+..+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            4677899999999999999999998754

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.01  E-value=0.00044  Score=60.03  Aligned_cols=37  Identities=24%  Similarity=0.073  Sum_probs=26.9

Q ss_pred             hhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          123 TRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       123 ~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      |....++..+++.|+|.|++||||||+++.|++.++.
T Consensus        11 ~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           11 TLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             --------CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             cccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3334566678899999999999999999999998754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.00  E-value=0.00035  Score=60.07  Aligned_cols=31  Identities=19%  Similarity=0.239  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      .+..++|.||+|+|||++|+.+++.++..++
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            4467999999999999999999999886544

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.99  E-value=0.00045  Score=55.78  Aligned_cols=29  Identities=28%  Similarity=0.386  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|+|||||+..++...+
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~   45 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGLLSG   45 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46778999999999999999999987434

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.99  E-value=0.00042  Score=57.24  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=22.8

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .++|.||+|||||||++.|+..++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6889999999999999999998863

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.96  E-value=0.00063  Score=61.79  Aligned_cols=38  Identities=24%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAIN  163 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS  163 (251)
                      ++-..+++..++|+||+|||||||++.|+.-+.+.|+.
T Consensus       119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~  156 (305)
T 2v9p_A          119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLS  156 (305)
T ss_dssp             HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEEC
T ss_pred             ceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEEE
Confidence            34566888999999999999999999999988766654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.94  E-value=0.00055  Score=59.44  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..+..+++.||+|+|||++|+.+++.++..++..+
T Consensus        46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            44578899999999999999999999987766554

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.00073  Score=64.88  Aligned_cols=39  Identities=28%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..+.++=|++.||+|+|||.+|+++|.+.+..+++.+.-
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s  250 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS  250 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence            445678899999999999999999999999887776543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.00062  Score=65.86  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=33.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ..+.++=|++.||+|+|||.+|+++|.+.+..+++.+.
T Consensus       239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~  276 (467)
T 4b4t_H          239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG  276 (467)
T ss_dssp             TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh
Confidence            45677889999999999999999999999988777654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.91  E-value=0.00023  Score=55.86  Aligned_cols=32  Identities=9%  Similarity=0.092  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      +..|+|.||+|+|||++|+.+++..+ .++..|
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~   58 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPA   58 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCS
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhCC-CeEEec
Confidence            45689999999999999999998776 554443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.91  E-value=0.00068  Score=59.08  Aligned_cols=24  Identities=25%  Similarity=0.213  Sum_probs=22.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.++|+||+|+|||++++.+++.+
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999999987

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.90  E-value=0.00077  Score=62.89  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +..++|.||+|+|||+||+.++..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999876

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.90  E-value=0.00078  Score=55.01  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=26.5

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|+|||||.+.|+..++
T Consensus        29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            347778999999999999999999999874

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.88  E-value=0.00064  Score=56.58  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.++++|+|++|||||||+..|.+.+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            35789999999999999999998764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.87  E-value=0.00062  Score=57.05  Aligned_cols=26  Identities=27%  Similarity=0.203  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+++.|+|++||||||++.+|++.+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            35789999999999999999998865

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.87  E-value=0.00062  Score=65.05  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ++-+++.||+|+|||++|+.||+.++...+..|.
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~   83 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence            3458999999999999999999999988776654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.85  E-value=0.0053  Score=55.33  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=29.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK  166 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds  166 (251)
                      ..+..+|+|+|++|+|||||+.+|+..+   +  ..++..|.
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP  117 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence            4567899999999999999999998765   2  34666664

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.85  E-value=0.00095  Score=62.22  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=28.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc-CCceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF-SGEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~D  165 (251)
                      ..++-++|.||+|+|||++|+.+|+.+ +..++..+
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~  200 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS  200 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence            345789999999999999999999998 66655544

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.84  E-value=0.0006  Score=55.86  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+++.+++|.||+|+|||||+..++..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            366789999999999999999999884

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.84  E-value=0.00077  Score=58.08  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .+++.|+|.|++||||||++..|++.++.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46789999999999999999999999986

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.84  E-value=0.00056  Score=58.79  Aligned_cols=30  Identities=20%  Similarity=0.299  Sum_probs=25.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|||||||.+.|+--..
T Consensus        27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            346778999999999999999999986553

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.80  E-value=0.00034  Score=65.41  Aligned_cols=29  Identities=28%  Similarity=0.320  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .++.+|+++|.+||||||++++|++.++.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~   65 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF   65 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            45678999999999999999999998763

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.79  E-value=0.0027  Score=60.76  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~  167 (251)
                      ++.+|+++|++||||||++.+||..+     ...++.+|.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~  139 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW  139 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            57899999999999999999999754     2357888865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.75  E-value=0.00084  Score=54.99  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +++.+++|.||+|+|||||+..++..
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999988764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.74  E-value=0.001  Score=56.25  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +..++|.||+|+|||++|+.+++..+
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            46789999999999999999998864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.74  E-value=0.001  Score=59.62  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|+||+||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999999765

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.74  E-value=0.00055  Score=56.71  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=22.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++.|+|+||||||||++.|+..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            6899999999999999999988763

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.74  E-value=0.00098  Score=59.88  Aligned_cols=26  Identities=35%  Similarity=0.517  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++.+++|+||+||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            56799999999999999999999765

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.73  E-value=0.00077  Score=58.01  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.+++|.||+|||||||.+.|+.-+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3677899999999999999999998765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.73  E-value=0.00066  Score=57.86  Aligned_cols=29  Identities=28%  Similarity=0.390  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           27 VKKGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36678999999999999999999986553

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.71  E-value=0.00092  Score=64.86  Aligned_cols=29  Identities=17%  Similarity=0.211  Sum_probs=26.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .++.+|+|+|++||||||+|+.||++++.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            35578999999999999999999999985

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.70  E-value=0.00092  Score=56.56  Aligned_cols=26  Identities=15%  Similarity=0.244  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++-|+|.|+-||||||+++.|++.+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            36799999999999999999999884

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.69  E-value=0.0013  Score=63.09  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      .++-++|.||+|+|||+||+.++.+.+.+++..+
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is   81 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS   81 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence            3455999999999999999999999987766543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.69  E-value=0.00086  Score=58.51  Aligned_cols=29  Identities=17%  Similarity=0.070  Sum_probs=25.7

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      ..++|.||+|+|||++|+.+++.++...+
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            47899999999999999999999986544

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.69  E-value=0.00088  Score=57.62  Aligned_cols=29  Identities=14%  Similarity=0.257  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            46778999999999999999999987653

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.69  E-value=0.0016  Score=56.13  Aligned_cols=42  Identities=21%  Similarity=0.294  Sum_probs=35.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLD  174 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ls  174 (251)
                      .++-++|.|+||+||||+|.+|.+ .+..+++-|...+.+.-+
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i~~~~~   56 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID-RGHQLVCDDVIDLKQENN   56 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEEEESSS
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEEEEeCC
Confidence            346899999999999999999988 478899888887776544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.67  E-value=0.00079  Score=61.36  Aligned_cols=29  Identities=31%  Similarity=0.447  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++..++|+||||||||||++.|+..++
T Consensus       172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          172 VQLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             HhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            35678999999999999999999998775

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.67  E-value=0.0012  Score=60.07  Aligned_cols=27  Identities=30%  Similarity=0.394  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++.+++|+||+||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999999765

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.67  E-value=0.0011  Score=60.75  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|+|||||||||+.+.|+..+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4667899999999999999999998765

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.64  E-value=0.0015  Score=62.75  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEA  161 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~V  161 (251)
                      ++..++|.||||+||||+|+.|+..++...
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~  136 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF  136 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence            577999999999999999999999987543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.64  E-value=0.00095  Score=58.37  Aligned_cols=29  Identities=14%  Similarity=0.243  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36778999999999999999999987654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.63  E-value=0.0015  Score=62.33  Aligned_cols=36  Identities=19%  Similarity=0.201  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      .+.++-++|.||||+|||++|+.+++..+..++..+
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn  270 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence            355677999999999999999999999987766554

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.61  E-value=0.0012  Score=64.28  Aligned_cols=29  Identities=17%  Similarity=0.366  Sum_probs=25.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+|+|+|++||||||+|+.|+++++
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            34568899999999999999999999976

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.61  E-value=0.0014  Score=61.46  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.-++|.||+|+|||++|+.|++.+
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999986

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.60  E-value=0.00094  Score=57.08  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           31 IERGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            36778999999999999999999987654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.60  E-value=0.0011  Score=57.28  Aligned_cols=27  Identities=33%  Similarity=0.352  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++.+++|.||+|||||||.+.|+--
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           26 VPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            367789999999999999999999874

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.59  E-value=0.0054  Score=53.16  Aligned_cols=27  Identities=22%  Similarity=0.213  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.++++.||+|+||||++..++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            456899999999999999999998876

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.59  E-value=0.00092  Score=58.78  Aligned_cols=29  Identities=24%  Similarity=0.308  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||++.|+--+.
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            36778999999999999999999987553

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.59  E-value=0.0019  Score=49.29  Aligned_cols=27  Identities=19%  Similarity=0.466  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +.+...|+|.|++|+|||||..+|...
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            355678999999999999999999754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.58  E-value=0.0013  Score=56.73  Aligned_cols=29  Identities=17%  Similarity=0.345  Sum_probs=25.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++.+++|.||+|+|||||++.|+...
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34677899999999999999999988654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.58  E-value=0.00097  Score=57.83  Aligned_cols=29  Identities=17%  Similarity=0.382  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36778999999999999999999987654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.58  E-value=0.0011  Score=57.89  Aligned_cols=30  Identities=17%  Similarity=0.242  Sum_probs=25.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|||||||.+.|+--+.
T Consensus        42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            346778999999999999999999987553

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.58  E-value=0.0013  Score=57.60  Aligned_cols=28  Identities=32%  Similarity=0.456  Sum_probs=24.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..+++.+++|.||+|||||||.+.|+--
T Consensus        42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           42 DVHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3467789999999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.58  E-value=0.00097  Score=57.92  Aligned_cols=29  Identities=24%  Similarity=0.411  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           30 VNKGDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36778999999999999999999987653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.58  E-value=0.0013  Score=58.58  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds~  167 (251)
                      .++.+++|+||+|+||||++..||..+    |  ..++.+|.+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            356799999999999999999998654    2  246677763

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.57  E-value=0.00095  Score=59.27  Aligned_cols=29  Identities=17%  Similarity=0.343  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           31 IKRGEVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            36778999999999999999999987553

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.57  E-value=0.001  Score=57.28  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           29 VPRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36678999999999999999999987653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.57  E-value=0.0015  Score=51.92  Aligned_cols=25  Identities=16%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+.+|+||+|||||||+.+|.-.++
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            4899999999999999999987654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.57  E-value=0.0019  Score=52.38  Aligned_cols=35  Identities=26%  Similarity=0.213  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC----CceEecC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS----GEAINSN  165 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~----~~VIS~D  165 (251)
                      .+.+.++|+|++|||||||+.+|+..+.    ..++..|
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d   66 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD   66 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence            3457899999999999999999998752    3455555

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.57  E-value=0.0018  Score=50.21  Aligned_cols=26  Identities=15%  Similarity=0.382  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45578999999999999999999875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.57  E-value=0.0014  Score=50.38  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..+|....
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCc
Confidence            445689999999999999999997643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.56  E-value=0.0016  Score=58.74  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~  167 (251)
                      .++.+++|+||+||||||++..||..+   +  ..++.+|.+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            457899999999999999999999765   2  245666754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.55  E-value=0.00091  Score=57.92  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=22.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      -++|.||+|+|||++|+.+++.++.
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~~   71 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLPE   71 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCcc
Confidence            4999999999999999999998863

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.54  E-value=0.0017  Score=61.14  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=27.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ..++|.||+|+|||++|+.+++..+...+..
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            5799999999999999999999998765544

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.54  E-value=0.0012  Score=58.14  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           47 IREGEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            46778999999999999999999987654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.54  E-value=0.0013  Score=57.34  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             EEEEcCCccCHHHHHHHHHHhc
Q 045245          136 VFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++|.||+|+||||+++.+++.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999964

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.53  E-value=0.0012  Score=58.00  Aligned_cols=30  Identities=20%  Similarity=0.339  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|||||||.+.|+--+.
T Consensus        41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            347778999999999999999999987654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.53  E-value=0.0013  Score=60.54  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|+|||||||||+.+.|+..+
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            344599999999999999999998765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.52  E-value=0.0013  Score=59.12  Aligned_cols=27  Identities=33%  Similarity=0.496  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ...++|+||+|||||||++.|+..++.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            678999999999999999999998764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.52  E-value=0.0015  Score=56.66  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++ .+++|.||+|||||||.+.|+--..
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            56 7999999999999999999987654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.52  E-value=0.0015  Score=58.09  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++.++|.||||+|||+||..++....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999997543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.51  E-value=0.011  Score=46.46  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0013  Score=60.00  Aligned_cols=28  Identities=18%  Similarity=0.277  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++-++|+||||+|||++++.+++++
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3567889999999999999999999987

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.50  E-value=0.0018  Score=51.85  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..+|....
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            455789999999999999999998643

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.50  E-value=0.0017  Score=61.03  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++.+++|+|||||||||+.+.|+..++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            4567999999999999999999988775

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.49  E-value=0.0013  Score=57.53  Aligned_cols=29  Identities=14%  Similarity=0.224  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            46778999999999999999999987654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.49  E-value=0.0014  Score=57.38  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            36778999999999999999999987553

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.49  E-value=0.0016  Score=56.66  Aligned_cols=27  Identities=22%  Similarity=0.274  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      +..++|.||+|+|||++|+.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999998864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.49  E-value=0.0018  Score=66.13  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=32.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ....++=|++.||+|+|||+||+++|.+++..++..|.
T Consensus       234 g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~  271 (806)
T 3cf2_A          234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING  271 (806)
T ss_dssp             CCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence            34556789999999999999999999999988777654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.48  E-value=0.0019  Score=59.84  Aligned_cols=28  Identities=32%  Similarity=0.476  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|+||+||||||+++.|+..+
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            3567899999999999999999999765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.47  E-value=0.0058  Score=61.29  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc----------CCceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF----------SGEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l----------~~~VIS~Ds  166 (251)
                      ++-++|+||+|+|||++|+.+++.+          +..++..|.
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~  234 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM  234 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence            3457899999999999999999987          556666553

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.46  E-value=0.0015  Score=56.17  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+++.+++|.||+|||||||+..++..
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            366789999999999999999998853

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.46  E-value=0.0015  Score=56.44  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=21.4

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcC
Q 045245          136 VFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++|.||+|+|||++|+.+++.++
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999999864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.46  E-value=0.002  Score=50.44  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +...|+|.|++|+|||||.++|...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.46  E-value=0.0018  Score=55.38  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++.|+|.|+.||||||+++.|++.+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367999999999999999999999884

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.45  E-value=0.0023  Score=52.11  Aligned_cols=27  Identities=30%  Similarity=0.249  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.++|+|+|.+|||||||+.+|+...
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            355788999999999999999999874

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.45  E-value=0.0016  Score=58.04  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.++++|+|++||||||+.+.|....
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            45789999999999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.44  E-value=0.0011  Score=56.76  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36678999999999999999999987654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.43  E-value=0.0015  Score=54.61  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++|.||+|+||||+.+.|+..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            468999999999999999999865

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.43  E-value=0.002  Score=54.81  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=22.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++|.||+|+|||++|+.+++.++
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            499999999999999999999863

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.43  E-value=0.0012  Score=56.12  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +++.+++|.||+|||||||++.|+-.
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            56679999999999999999999865

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.42  E-value=0.002  Score=48.66  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.|+|.|++|+|||||..++....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.41  E-value=0.0028  Score=52.92  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc----CCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF----SGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~~~VIS~Ds  166 (251)
                      .+..+++++|..||||||++..|+..+    ...++..|.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~   51 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   51 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            345789999999999999999999654    344677664

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.41  E-value=0.0021  Score=53.13  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++++++.||+|+||||++.+++.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999998888764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.40  E-value=0.0024  Score=49.21  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ++...|+|.|++|+|||||..+|...
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            55678999999999999999999764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.40  E-value=0.0027  Score=61.19  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=27.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      +-++|.||+|+|||+||+.++...+...+..+.
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g   97 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASG   97 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence            449999999999999999999998876665543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.39  E-value=0.0015  Score=56.98  Aligned_cols=28  Identities=29%  Similarity=0.280  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++.+++|.||+|||||||.+.|+--+.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            6678999999999999999999987653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.39  E-value=0.0015  Score=57.05  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           23 VRAGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            36678999999999999999999987554

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.39  E-value=0.0015  Score=57.95  Aligned_cols=29  Identities=24%  Similarity=0.157  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           44 IAKGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            46778999999999999999999987654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.36  E-value=0.0025  Score=48.87  Aligned_cols=26  Identities=23%  Similarity=0.448  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44578999999999999999999875

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.36  E-value=0.0024  Score=62.92  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+.-++|.||+|+|||++|+.||+.+
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            334558999999999999999999986

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.34  E-value=0.0015  Score=63.57  Aligned_cols=30  Identities=27%  Similarity=0.360  Sum_probs=26.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|+|++|||||||++.|+..++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            345778999999999999999999999885

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.34  E-value=0.0051  Score=49.63  Aligned_cols=27  Identities=15%  Similarity=0.102  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .....|+|.|++|+|||||..+|....
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            445789999999999999999997653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.34  E-value=0.0024  Score=47.86  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..|++.|++|+|||||..+|....
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999998653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.33  E-value=0.0026  Score=48.21  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ....|+|.|++|+|||||..+|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.33  E-value=0.0015  Score=52.35  Aligned_cols=27  Identities=19%  Similarity=0.132  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++..++|+|++|+|||||.+.|+...
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            566789999999999999999987543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.31  E-value=0.0026  Score=51.31  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..+|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            445789999999999999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.30  E-value=0.0025  Score=51.23  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++|.|++|||||||.+.++...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3679999999999999999998754

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.29  E-value=0.0031  Score=53.83  Aligned_cols=32  Identities=16%  Similarity=0.143  Sum_probs=26.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCC--ceEecC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSG--EAINSN  165 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~--~VIS~D  165 (251)
                      ..++|.||+|+|||+|++.++++.+.  ..+++.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence            59999999999999999999988753  344443

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.29  E-value=0.0027  Score=53.74  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=21.1

Q ss_pred             EEEEcCCccCHHHHHHHHHHhc
Q 045245          136 VFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++|.||+|+|||++|+.+++.+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHh
Confidence            8999999999999999999986

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.29  E-value=0.0026  Score=49.58  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=21.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|++|+|||||.++|...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            67999999999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.29  E-value=0.0021  Score=56.64  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcC
Q 045245          136 VFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++.||+|+||||+|+.+++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999999864

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=96.28  E-value=0.0026  Score=55.86  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=28.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ++|+|+|+.||||||+|..|+++++..+++.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~   32 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQL   32 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEec
Confidence            5899999999999999999999888877764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.0031  Score=49.66  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|||||||..+|....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.28  E-value=0.0028  Score=54.06  Aligned_cols=31  Identities=19%  Similarity=0.303  Sum_probs=26.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ..++|.||.|+|||+|++.++++.+...+++
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~   62 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDC   62 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEe
Confidence            6999999999999999999999886445554

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.28  E-value=0.0026  Score=49.02  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..+|....
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC
Confidence            345789999999999999999998643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.27  E-value=0.0024  Score=49.04  Aligned_cols=26  Identities=19%  Similarity=0.399  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|.|++|+|||||..+|...
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            44568999999999999999999653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.27  E-value=0.0016  Score=58.98  Aligned_cols=30  Identities=13%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|+||+|||||||++.|+.-+.
T Consensus        76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           76 TVMPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             EECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            347788999999999999999999987664

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.26  E-value=0.016  Score=49.56  Aligned_cols=23  Identities=30%  Similarity=0.310  Sum_probs=20.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|++|+|||||..+|...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            67999999999999999999764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.26  E-value=0.0031  Score=47.50  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...|+|.|++|+|||||..+|....
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc
Confidence            4679999999999999999998643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.26  E-value=0.0028  Score=49.98  Aligned_cols=27  Identities=33%  Similarity=0.309  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ......|+|.|++|+|||||..+|...
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            345578999999999999999999875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.26  E-value=0.0026  Score=50.45  Aligned_cols=27  Identities=22%  Similarity=0.243  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..+|....
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence            445789999999999999999998654

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.26  E-value=0.0016  Score=58.82  Aligned_cols=28  Identities=29%  Similarity=0.307  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++..++|+||||||||||++.|+..++
T Consensus       169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          169 AIGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            4567999999999999999999998775

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.25  E-value=0.0016  Score=63.00  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCC-----ceEecCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSG-----EAINSNK  166 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~-----~VIS~Ds  166 (251)
                      .+.+|+++|++||||||+|+.|+++++.     .++..|.
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~  410 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV  410 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence            4678999999999999999999998763     4555554

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.25  E-value=0.0028  Score=53.74  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=21.1

Q ss_pred             EEEEcCCccCHHHHHHHHHHhc
Q 045245          136 VFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++|.||+|+|||++|+.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            9999999999999999999986

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.25  E-value=0.0028  Score=51.77  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      +++.+++|.|+||+|||+||..++.
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            6678999999999999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.25  E-value=0.0031  Score=49.04  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44568999999999999999999864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.22  E-value=0.0037  Score=61.20  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=28.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      .++|.||||+|||++|+.|++.++..++..|.
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~  521 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDM  521 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEec
Confidence            69999999999999999999999877665553

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.22  E-value=0.0023  Score=57.19  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--+.
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            46778999999999999999999987653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.22  E-value=0.0029  Score=48.42  Aligned_cols=27  Identities=15%  Similarity=0.122  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .....|+|.|++|+|||||..+|....
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence            445789999999999999999998654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.21  E-value=0.0033  Score=47.28  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...|+|.|++|+|||||..++....
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCC
Confidence            3579999999999999999998643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.21  E-value=0.0032  Score=49.00  Aligned_cols=27  Identities=26%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .....|+|.|++|+|||||..+|....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence            344689999999999999999997654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.21  E-value=0.003  Score=48.96  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..++...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44578999999999999999999874

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.20  E-value=0.019  Score=51.45  Aligned_cols=38  Identities=13%  Similarity=0.157  Sum_probs=29.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK  166 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds  166 (251)
                      ...+..+++|+|++|+||||++..|+..+   +  ..++..|.
T Consensus        52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            34677899999999999999999998654   2  34666665

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.19  E-value=0.0034  Score=48.51  Aligned_cols=27  Identities=26%  Similarity=0.242  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..++....
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            455789999999999999999998643

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.18  E-value=0.0047  Score=55.99  Aligned_cols=27  Identities=15%  Similarity=0.066  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +...+|+|+|+||||||||..+|...+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            447899999999999999999998753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.17  E-value=0.036  Score=50.02  Aligned_cols=29  Identities=17%  Similarity=0.141  Sum_probs=25.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++.++.|+||+|||||||.+.|+..+
T Consensus        51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           51 QTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            34677899999999999999999998654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.16  E-value=0.0041  Score=55.00  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=27.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds  166 (251)
                      ..+..++|.||||+|||++|+.+++..+     ...+++..
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~   63 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA   63 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence            4456789999999999999999998542     34566544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.14  E-value=0.003  Score=49.07  Aligned_cols=26  Identities=23%  Similarity=0.475  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcC
Confidence            34578999999999999999999853

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.14  E-value=0.0043  Score=47.77  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhC
Confidence            34467999999999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.13  E-value=0.0035  Score=47.54  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHh
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ...|+|.|++|+|||||..+|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999999863

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.13  E-value=0.0024  Score=61.51  Aligned_cols=28  Identities=29%  Similarity=0.374  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+..++|+|||||||||+.+.|+...+
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4566799999999999999999988765

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.13  E-value=0.0032  Score=58.52  Aligned_cols=29  Identities=31%  Similarity=0.443  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.+++|.||+|||||||.+.|+--..
T Consensus        27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            36778999999999999999999987654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.11  E-value=0.004  Score=56.29  Aligned_cols=37  Identities=19%  Similarity=0.298  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---CC--ceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---SG--EAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~--~VIS~Ds~  167 (251)
                      .++++++|+||+|+||||++..||..+   +.  .++.+|..
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            567899999999999999999998765   22  35666653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.11  E-value=0.0038  Score=50.10  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=21.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++|.|++|+|||||.+.|....
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            579999999999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.09  E-value=0.0037  Score=49.40  Aligned_cols=26  Identities=27%  Similarity=0.226  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++..|+|+|++|+|||||.++|....
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999998653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.09  E-value=0.004  Score=47.62  Aligned_cols=25  Identities=28%  Similarity=0.247  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...|+|.|++|+|||||..+|....
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCC
Confidence            4679999999999999999997643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.08  E-value=0.0035  Score=58.01  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence            36778999999999999999999987553

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.07  E-value=0.0034  Score=48.62  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +...|+|.|++|+|||||..+|....
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence            44679999999999999999998643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.07  E-value=0.0032  Score=47.66  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +...|+|.|++|+|||||..+|...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.06  E-value=0.0034  Score=47.65  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...|+|.|++|+|||||..+|....
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4679999999999999999998754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.05  E-value=0.0031  Score=55.54  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+ +.+++|.||+|||||||.+.|+--.
T Consensus        28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           28 VN-GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            36 7899999999999999999998755

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.05  E-value=0.0037  Score=57.93  Aligned_cols=29  Identities=17%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            36778999999999999999999987654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.05  E-value=0.0038  Score=48.54  Aligned_cols=27  Identities=22%  Similarity=0.182  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .....|+|.|++|+|||||..+|....
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence            344689999999999999999998643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.04  E-value=0.0036  Score=47.90  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHh
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ...|+|.|++|+|||||..+|...
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            367899999999999999999854

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.04  E-value=0.0051  Score=55.85  Aligned_cols=29  Identities=28%  Similarity=0.450  Sum_probs=25.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++.++.|.||+|||||||+..++-..
T Consensus       127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          127 GIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34677899999999999999999998765

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.03  E-value=0.0034  Score=58.11  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           38 IREGEMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            36678999999999999999999987553

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.03  E-value=0.0038  Score=58.03  Aligned_cols=29  Identities=17%  Similarity=0.187  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            36778999999999999999999987553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.01  E-value=0.0036  Score=59.48  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~  167 (251)
                      ++.+|+++||+||||||++..||..+   +  ..++.+|.+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            57899999999999999999998655   2  346777753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.01  E-value=0.0048  Score=46.69  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|++|+|||||..+|...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57899999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.00  E-value=0.0039  Score=47.49  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ....|+|.|++|+|||||..++...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999999865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.00  E-value=0.0046  Score=48.82  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|||||||..+|....
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCC
Confidence            445689999999999999999998643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.99  E-value=0.004  Score=58.10  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|||||||.+.|+--..
T Consensus        50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           50 HVPAGQIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence            347788999999999999999999987553

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.99  E-value=0.004  Score=58.33  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            36778999999999999999999987654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.99  E-value=0.0048  Score=46.82  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|++|+|||||..+|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            57899999999999999999854

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.98  E-value=0.0062  Score=59.64  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.-++|+||+|+|||++|+.|++.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999987

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.97  E-value=0.0037  Score=57.97  Aligned_cols=28  Identities=18%  Similarity=0.190  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++.+++|.||+|||||||.+.|+--..
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence            5678999999999999999999987554

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.97  E-value=0.004  Score=47.10  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..|+|.|++|+|||||..+|....
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999997643

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.97  E-value=0.0048  Score=47.69  Aligned_cols=25  Identities=16%  Similarity=0.175  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ....|+|.|++|+|||||..+|...
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.97  E-value=0.0031  Score=58.02  Aligned_cols=29  Identities=21%  Similarity=0.227  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence            36778999999999999999999987553

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.97  E-value=0.0046  Score=60.25  Aligned_cols=28  Identities=29%  Similarity=0.337  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|+||+||||||+++.|+..+
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            4567899999999999999999998765

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.95  E-value=0.0029  Score=59.26  Aligned_cols=29  Identities=17%  Similarity=0.397  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEA  161 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~V  161 (251)
                      ...|+|+||+|+||||+++.|++.++...
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            34699999999999999999999887544

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.95  E-value=0.0036  Score=59.01  Aligned_cols=35  Identities=26%  Similarity=0.423  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNK  166 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds  166 (251)
                      ++++|+|+|++|+||||++.+||..+     ...++.+|.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            35789999999999999999999865     356777775

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.94  E-value=0.0071  Score=55.48  Aligned_cols=40  Identities=13%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL  173 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l  173 (251)
                      ++-++|.|+||+||||+|..|.++ +..+++-|..-+++.=
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i~~~~  183 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEIREIS  183 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEEEESS
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEEEEcC
Confidence            578999999999999999999875 7788888887776543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.94  E-value=0.003  Score=58.14  Aligned_cols=29  Identities=17%  Similarity=0.131  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.+++|.||+|||||||.+.|+--..
T Consensus        28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           28 IENGERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            36778999999999999999999987553

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=95.93  E-value=0.003  Score=58.24  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ++.++++.|+|.|+-||||||+++.|++.++.
T Consensus         2 ~~~~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            2 SHMVTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             CCEEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            34566789999999999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.92  E-value=0.0042  Score=47.76  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...|+|.|++|+|||||..+|....
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            4679999999999999999998643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.92  E-value=0.0047  Score=48.45  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +...|+|.|++|+|||||+.+|....
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCC
Confidence            34679999999999999999998653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.91  E-value=0.005  Score=49.30  Aligned_cols=29  Identities=21%  Similarity=0.288  Sum_probs=23.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...+...|+|.|++|+|||||..+|....
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            33456789999999999999999998754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.91  E-value=0.0051  Score=49.45  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..+|....
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345789999999999999999998653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.89  E-value=0.0047  Score=57.78  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=25.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++.+++|.||+|||||||.+.|+--.
T Consensus        43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            34778899999999999999999998643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.89  E-value=0.004  Score=49.32  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|++|+|||||.++++..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999863

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.89  E-value=0.006  Score=48.75  Aligned_cols=25  Identities=16%  Similarity=0.428  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+.+|.||+|||||||..+|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999886544

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.87  E-value=0.012  Score=51.37  Aligned_cols=28  Identities=14%  Similarity=0.107  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++++.++.||.||||||.+..++.++
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3567899999999999999999998876

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.86  E-value=0.0046  Score=54.42  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=22.7

Q ss_pred             CCeEEEE--EcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFV--MGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvI--sGpTGSGKTTLA~~LAk~l  157 (251)
                      .+..++|  +||+|+|||+|++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4567888  9999999999999999875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.86  E-value=0.0059  Score=48.57  Aligned_cols=26  Identities=15%  Similarity=0.349  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44578999999999999999999865

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.85  E-value=0.0068  Score=51.11  Aligned_cols=27  Identities=19%  Similarity=0.179  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++++.++.||.||||||.+..++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            456899999999999999999998876

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.85  E-value=0.0047  Score=54.28  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=21.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++|+||+|+|||||.+.|+....
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3688999999999999999997653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.80  E-value=0.0047  Score=47.86  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+...|+|.|++|+|||||..++..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999874

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.79  E-value=0.0058  Score=47.14  Aligned_cols=26  Identities=15%  Similarity=0.369  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|.|++|+|||||..+|...
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            33467999999999999999999864

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.79  E-value=0.0068  Score=53.83  Aligned_cols=29  Identities=10%  Similarity=0.140  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .-+..+++.||+|+|||++|+.+|+.+..
T Consensus        22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           22 RGHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            34567999999999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.77  E-value=0.0065  Score=47.91  Aligned_cols=27  Identities=26%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..+|....
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence            344679999999999999999998743

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.77  E-value=0.0058  Score=54.22  Aligned_cols=26  Identities=15%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+.+++|+||+|+|||||.+.|+ ...
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            45799999999999999999999 654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.77  E-value=0.0063  Score=48.61  Aligned_cols=26  Identities=15%  Similarity=0.284  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|.|++|+|||||..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            34468999999999999999999764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.76  E-value=0.0063  Score=61.03  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=26.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc---CCceEecC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF---SGEAINSN  165 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~D  165 (251)
                      ..++|.||||+|||++|+.|++.+   +..++..|
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~  623 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID  623 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence            479999999999999999999987   44455444

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.73  E-value=0.0067  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ..|+|.|++|+|||||..++..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999974

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.73  E-value=0.0064  Score=47.28  Aligned_cols=27  Identities=15%  Similarity=0.022  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ....|+|.|++|+|||||.+.|...+.
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            346799999999999999988877664

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.72  E-value=0.0062  Score=50.76  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|+|++|+|||||...|....
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence            445789999999999999999998644

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.0049  Score=58.55  Aligned_cols=32  Identities=34%  Similarity=0.353  Sum_probs=26.6

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.-...++.+++|.||+|||||||++.|+.-.
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            33445678999999999999999999998654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.70  E-value=0.0069  Score=46.65  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +...|+|.|++|+|||||..+|....
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC
Confidence            34679999999999999999997643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.70  E-value=0.007  Score=46.72  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +...|+|.|++|+|||||..++...
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999999854

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.70  E-value=0.0071  Score=45.98  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ..|+|.|++|+|||||..++..
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            4789999999999999999964

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.69  E-value=0.0071  Score=53.69  Aligned_cols=35  Identities=20%  Similarity=0.445  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc---CC--ceEecCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF---SG--EAINSNK  166 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~~--~VIS~Ds  166 (251)
                      ++++++|+|++|+||||++..||..+   +.  .++.+|.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~  136 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence            56789999999999999999998765   22  3555554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.68  E-value=0.0058  Score=58.75  Aligned_cols=30  Identities=17%  Similarity=0.366  Sum_probs=26.4

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++..++|.||+|||||||++.|+.-+.
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          365 SIPQGKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457788999999999999999999987664

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.67  E-value=0.0081  Score=45.56  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .|+|.|++|+|||||..++....
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999997643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.67  E-value=0.0091  Score=46.86  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|.|++|+|||||..+|...
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence            34568999999999999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.66  E-value=0.0088  Score=57.82  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds  166 (251)
                      .++++|+|+|++||||||++.+||..+   +  ..++.+|.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            346789999999999999999999654   2  45777775

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.65  E-value=0.0078  Score=47.13  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...|+|.|++|+|||||..+|....
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4679999999999999999998643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.65  E-value=0.0054  Score=47.88  Aligned_cols=26  Identities=15%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +...|+|.|++|+|||||..+|....
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCC
Confidence            34689999999999999999998653

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.65  E-value=0.0054  Score=58.96  Aligned_cols=30  Identities=17%  Similarity=0.363  Sum_probs=26.4

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++..++|.||+|||||||++.|+.-+.
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          365 KIPAGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            447788999999999999999999987664

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.64  E-value=0.0067  Score=61.95  Aligned_cols=38  Identities=24%  Similarity=0.249  Sum_probs=32.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ...++-+++.||+|+|||.+|+++|.+.+...++.+.-
T Consensus       508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~  545 (806)
T 3cf2_A          508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP  545 (806)
T ss_dssp             CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHH
T ss_pred             CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccc
Confidence            34566799999999999999999999999988877543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.64  E-value=0.0075  Score=48.27  Aligned_cols=26  Identities=31%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..++...
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34458899999999999999999864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.63  E-value=0.008  Score=46.97  Aligned_cols=27  Identities=15%  Similarity=0.239  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..++....
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            345789999999999999999997643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.63  E-value=0.0087  Score=47.39  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            44578999999999999999999765

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.62  E-value=0.0088  Score=53.13  Aligned_cols=28  Identities=21%  Similarity=0.438  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.++.|.||+|+|||+|+..++...
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            3667899999999999999999998753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.62  E-value=0.011  Score=53.27  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=25.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..+++.++.|.||+|+|||+||..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4577889999999999999999999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.61  E-value=0.0086  Score=47.65  Aligned_cols=26  Identities=15%  Similarity=0.358  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|.|++|+|||||..+|...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            44578999999999999999999854

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.61  E-value=0.0089  Score=47.70  Aligned_cols=28  Identities=18%  Similarity=0.134  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+...|+|.|++|+|||||..++....
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3445789999999999999999987653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.61  E-value=0.0077  Score=49.29  Aligned_cols=26  Identities=35%  Similarity=0.354  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|.|++|+|||||..+|...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            45578999999999999999999875

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.59  E-value=0.0091  Score=54.77  Aligned_cols=38  Identities=21%  Similarity=0.388  Sum_probs=32.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceec
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYK  171 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk  171 (251)
                      ++-++|.|+||+||||+|..|.+ .|..+++=|...+.+
T Consensus       147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i~~  184 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEIYR  184 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEEEE
Confidence            56799999999999999999976 677888888777664

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.0073  Score=47.83  Aligned_cols=27  Identities=19%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .....|+|.|++|+|||||..+|....
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            445689999999999999999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.57  E-value=0.0043  Score=48.24  Aligned_cols=25  Identities=16%  Similarity=0.240  Sum_probs=11.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ....|+|.|++|+|||||..+|...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEEECCCCC------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999999754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.0091  Score=46.96  Aligned_cols=26  Identities=19%  Similarity=0.484  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999853

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.56  E-value=0.0064  Score=58.73  Aligned_cols=27  Identities=30%  Similarity=0.493  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+..++|.||+|+||||+|+.|+..++
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            346899999999999999999999875

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.54  E-value=0.011  Score=53.19  Aligned_cols=28  Identities=25%  Similarity=0.536  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++.+-++|.||+|+|||.+|..||..++
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            6567899999999999999999999754

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.54  E-value=0.0072  Score=56.17  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=27.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEec
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINS  164 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~  164 (251)
                      .+++..++|.||+|+|||+||..++.+.+  ...++.
T Consensus       120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            35667889999999999999999998633  234454

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.53  E-value=0.0077  Score=47.29  Aligned_cols=26  Identities=19%  Similarity=0.480  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.52  E-value=0.0081  Score=47.75  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..+|....
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCC
Confidence            345689999999999999999998653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.51  E-value=0.0081  Score=49.42  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ++...|+|.|++|+|||||..+|...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.51  E-value=0.0085  Score=47.42  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..++....
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            445789999999999999999998753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.50  E-value=0.0086  Score=47.52  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=21.1

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..+...|+|.|++|+|||||..++...
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            345678999999999999999999754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.50  E-value=0.0083  Score=47.09  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ......|+|.|++|+|||||..+|...
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            355678999999999999999999754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.49  E-value=0.0086  Score=46.51  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|++|+|||||..++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999999864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.49  E-value=0.008  Score=52.78  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +++.++.|.||+|+|||+||..++..
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            66789999999999999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.48  E-value=0.011  Score=47.50  Aligned_cols=26  Identities=27%  Similarity=0.224  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..++...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34568999999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.47  E-value=0.0096  Score=47.36  Aligned_cols=27  Identities=15%  Similarity=0.300  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..++....
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCC
Confidence            444689999999999999999998643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.46  E-value=0.0069  Score=53.49  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+.+++|.||+|+|||||.+.|+....
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccccc
Confidence            457899999999999999999987553

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.46  E-value=0.0089  Score=47.51  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...|+|.|++|+|||||..+|....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            4679999999999999999997643

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.45  E-value=0.0084  Score=54.69  Aligned_cols=27  Identities=19%  Similarity=0.471  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+++.++.|.||+|+||||||..++..
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~~   84 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVAN   84 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999864

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.45  E-value=0.0084  Score=55.48  Aligned_cols=28  Identities=21%  Similarity=0.485  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+++.++.|.||+|+|||||+..++...
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4667899999999999999999998764

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.42  E-value=0.007  Score=58.24  Aligned_cols=25  Identities=24%  Similarity=0.499  Sum_probs=23.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++|.||||+|||++|+.|++..+
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            5799999999999999999999885

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.41  E-value=0.0082  Score=48.28  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            44578999999999999999999753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.40  E-value=0.0062  Score=58.93  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=26.5

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++..++|.||+|||||||++.|+.-+.
T Consensus       377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             ECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            457789999999999999999999987664

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.40  E-value=0.011  Score=46.64  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +...|+|.|++|+|||||..+|...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            4468999999999999999999754

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.39  E-value=0.013  Score=50.75  Aligned_cols=37  Identities=14%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC---CceEec-CCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS---GEAINS-NKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~-Ds~  167 (251)
                      ..+++|+|+|.+||||+++|..+.+.++   ..+++. |.+
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i   49 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL   49 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence            4567999999999999999999988785   445554 443

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.37  E-value=0.011  Score=47.82  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+...|+|.|++|+|||||..++..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3446789999999999999999975

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.37  E-value=0.011  Score=46.86  Aligned_cols=26  Identities=19%  Similarity=0.206  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ....|+|.|++|+|||||..+|....
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34679999999999999999998643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.37  E-value=0.0079  Score=48.58  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .....|+|.|++|+|||||..++..
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh
Confidence            3446899999999999999999964

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.36  E-value=0.01  Score=54.01  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+.+|+||+|||||||..+|.-.
T Consensus        24 g~~~i~G~NGaGKTTll~ai~~a   46 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAISFA   46 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999888633

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.35  E-value=0.011  Score=46.87  Aligned_cols=26  Identities=19%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcC
Confidence            34567999999999999999999864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.34  E-value=0.012  Score=55.60  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds  166 (251)
                      .++++|+++|++|+||||++..||..+    +  ..++.+|.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            356889999999999999999998544    3  45777785

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.34  E-value=0.012  Score=52.35  Aligned_cols=27  Identities=19%  Similarity=0.479  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+++.+++|.|+||+|||+||..++..
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            466789999999999999999999865

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=95.33  E-value=0.0093  Score=55.84  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ...++++|+||.|+||||||..++.
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Confidence            4568999999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.33  E-value=0.011  Score=46.60  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...|+|.|++|+|||||..+|...-
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            4689999999999999999998643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.31  E-value=0.011  Score=47.64  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +...|+|.|++|+|||||..+|....
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCC
Confidence            34689999999999999999998643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.31  E-value=0.011  Score=49.64  Aligned_cols=27  Identities=19%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|+|++|+|||||..+|....
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence            345789999999999999999998543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.29  E-value=0.01  Score=57.15  Aligned_cols=28  Identities=29%  Similarity=0.296  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|+||+|||||||.+.|+-.+
T Consensus        44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           44 VKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3677899999999999999999998755

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.28  E-value=0.013  Score=46.94  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+...|+|.|++|+|||||..++..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            4457899999999999999999964

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.27  E-value=0.01  Score=55.07  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++.+++|+||+|+|||||.+.|+....
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccc
Confidence            457899999999999999999987554

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.27  E-value=0.0052  Score=59.13  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=26.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++..++|.||+|||||||++.|+.-+.
T Consensus       363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          363 SIEKGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            457789999999999999999999987664

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.24  E-value=0.0096  Score=55.68  Aligned_cols=25  Identities=28%  Similarity=0.403  Sum_probs=22.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHH
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLA  154 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LA  154 (251)
                      .+++.++.|.||+|+|||||+..|+
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHH
Confidence            4667899999999999999999876

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.23  E-value=0.011  Score=47.03  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ....|+|.|++|+|||||..+|...
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999999753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.22  E-value=0.0091  Score=47.09  Aligned_cols=25  Identities=32%  Similarity=0.266  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +...|+|.|++|+|||||..+|...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999865

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.22  E-value=0.0098  Score=53.11  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds  166 (251)
                      +.+++++|++|+||||++..||..+   +  ..++.+|.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            6799999999999999999999765   3  34666664

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.21  E-value=0.012  Score=47.18  Aligned_cols=26  Identities=31%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ....|+|.|++|+|||||..++....
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCc
Confidence            44689999999999999999998743

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.19  E-value=0.014  Score=48.64  Aligned_cols=26  Identities=19%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.+.+|+||+|+||||+..+|.-.+
T Consensus        22 ~~~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           22 KEGINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999886444

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.17  E-value=0.011  Score=47.19  Aligned_cols=29  Identities=21%  Similarity=0.311  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+...|+|.|++|+|||||.+.+..++.
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34557899999999999999998877553

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.16  E-value=0.0069  Score=58.55  Aligned_cols=30  Identities=23%  Similarity=0.311  Sum_probs=26.4

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++..++|+||+|||||||++.|+.-+.
T Consensus       365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          365 SVKPGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             EECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            447789999999999999999999988664

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.15  E-value=0.011  Score=46.49  Aligned_cols=25  Identities=28%  Similarity=0.502  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+...|+|.|++|+|||||..++..
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc
Confidence            3457899999999999999999853

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.11  E-value=0.014  Score=47.56  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcC
Confidence            34568999999999999999999753

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.10  E-value=0.011  Score=56.16  Aligned_cols=28  Identities=21%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             cCCCCeE--EEEEcCCccCHHHHHHHHHHh
Q 045245          129 NFNKKKV--VFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       129 ~~~k~ki--IvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..+++.+  ++|+||+|+|||||.+.|+..
T Consensus        36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            4466777  999999999999999999865

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.09  E-value=0.014  Score=54.32  Aligned_cols=29  Identities=21%  Similarity=0.509  Sum_probs=25.3

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ...+++.+++|.|+||+|||||+..++..
T Consensus       198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~  226 (454)
T 2r6a_A          198 SGFQRSDLIIVAARPSVGKTAFALNIAQN  226 (454)
T ss_dssp             SSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            35677889999999999999999998764

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.08  E-value=0.014  Score=48.90  Aligned_cols=22  Identities=36%  Similarity=0.504  Sum_probs=17.6

Q ss_pred             CCeEEEEEcCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDL  153 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~L  153 (251)
                      +++.+++.||||||||++...+
T Consensus        75 ~g~~~~i~g~TGsGKTt~~~~~   96 (235)
T 3llm_A           75 QNSVVIIRGATGCGKTTQVPQF   96 (235)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCcHHhHHHH
Confidence            3578999999999999865443

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.08  E-value=0.013  Score=53.83  Aligned_cols=27  Identities=22%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+++.+++|.|++|+||||||..++..
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.05  E-value=0.012  Score=46.40  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|++|+|||||..+|....
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            445789999999999999999997654

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=95.04  E-value=0.079  Score=46.62  Aligned_cols=27  Identities=15%  Similarity=0.086  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+.+.+|+||-||||||.+.+++.++
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~   52 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRG   52 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            557899999999999999776666654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.04  E-value=0.014  Score=47.61  Aligned_cols=26  Identities=15%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ....|+|.|++|+|||||..+|....
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            34679999999999999999998643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.02  E-value=0.012  Score=56.91  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|.||+|||||||.+.|+-.+
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            566899999999999999999998755

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.01  E-value=0.016  Score=51.81  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ..+.+.+|+||+|+|||+|..++.-
T Consensus        21 f~~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           21 FKEGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4457889999999999999998743

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.00  E-value=0.017  Score=46.67  Aligned_cols=26  Identities=31%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..++...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            34578999999999999999999864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.97  E-value=0.016  Score=47.33  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ....|+|.|++|+|||||..+|...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3468999999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.96  E-value=0.013  Score=55.55  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDL  153 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~L  153 (251)
                      ..+++.+++|.||+|||||||++.+
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence            3467889999999999999999994

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.95  E-value=0.014  Score=57.40  Aligned_cols=27  Identities=22%  Similarity=0.165  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|.||+|+|||||.+.|+-.+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            677899999999999999999998755

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.94  E-value=0.016  Score=46.62  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|.|++|+|||||..+|...
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence            34467999999999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.93  E-value=0.015  Score=46.89  Aligned_cols=26  Identities=15%  Similarity=0.166  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|.|++|+|||||..+|...
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhC
Confidence            34467999999999999999999764

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=94.93  E-value=0.018  Score=48.71  Aligned_cols=23  Identities=17%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+++|.|++|||||++|..++..
T Consensus         6 mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            6 EICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            48899999999999999987544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.93  E-value=0.011  Score=57.10  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|.||+|||||||++.|+-..
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567899999999999999999998755

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.91  E-value=0.0073  Score=54.76  Aligned_cols=26  Identities=19%  Similarity=0.348  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++.+++|+||+|+|||||.+.|+...
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccc
Confidence            45799999999999999999997654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.91  E-value=0.021  Score=52.23  Aligned_cols=31  Identities=13%  Similarity=0.081  Sum_probs=27.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ...++.++.|.||+|+|||||.+.|+.....
T Consensus        67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3467789999999999999999999998764

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.91  E-value=0.017  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=21.7

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .|+|.|+-||||||.++.|++.+.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~   25 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLE   25 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999998873

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.90  E-value=0.02  Score=46.10  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHh
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ...|+|.|.+|+|||||..++...
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999999999999854

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.89  E-value=0.017  Score=54.68  Aligned_cols=36  Identities=19%  Similarity=0.407  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      ++.+++|+|++|+||||++..||..+.     ..++.+|..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence            567899999999999999999997652     246666643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.88  E-value=0.016  Score=54.63  Aligned_cols=26  Identities=27%  Similarity=0.123  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +...++|.||+|+|||||.+.|+...
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            44599999999999999999998744

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.86  E-value=0.019  Score=51.75  Aligned_cols=35  Identities=11%  Similarity=0.057  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~  167 (251)
                      ..-++|.||||||||++++.|+...   +..++-.|.-
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~   72 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE   72 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467899999999999999997653   4555556653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.86  E-value=0.014  Score=56.14  Aligned_cols=27  Identities=30%  Similarity=0.269  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|.||+|||||||++.|+-.+
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998755

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=94.85  E-value=0.02  Score=54.28  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ...++|.|+|+.|+||||||+.++.
T Consensus       150 ~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          150 LDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4568999999999999999999996

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.81  E-value=0.021  Score=53.90  Aligned_cols=31  Identities=13%  Similarity=0.084  Sum_probs=27.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ...++.++.|.||+|+|||||.+.|+.....
T Consensus       153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             CCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            4577889999999999999999999998753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=94.80  E-value=0.0079  Score=54.05  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++ +++|+||+|||||||...|.--++
T Consensus        58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           58 LGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             CCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             cCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            3555 999999999999999999865554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.78  E-value=0.014  Score=57.26  Aligned_cols=28  Identities=32%  Similarity=0.299  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++.+++|.||+|||||||.+.|+-.+
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3677899999999999999999998755

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=94.76  E-value=0.019  Score=51.84  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      +.+.+.+|+||||+|||+|..+|.=
T Consensus        23 f~~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           23 FEKGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4557999999999999999888864

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=94.74  E-value=0.025  Score=48.75  Aligned_cols=25  Identities=12%  Similarity=0.280  Sum_probs=18.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ...++.+|.||.||||||...+.+.
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~   42 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVR   42 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHH
Confidence            4568999999999999954444443

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.70  E-value=0.016  Score=56.83  Aligned_cols=27  Identities=30%  Similarity=0.263  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++.+++|.||+|||||||.+.|+-.+
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998755

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.70  E-value=0.018  Score=55.48  Aligned_cols=26  Identities=15%  Similarity=0.288  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++ .+++|+||+|||||||.+.|+--+
T Consensus        28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           28 DE-LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence            45 799999999999999999998755

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.69  E-value=0.021  Score=52.94  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=25.1

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ....++.+++|.|+||+|||+||..++..
T Consensus       195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~  223 (444)
T 2q6t_A          195 GTLGPGSLNIIAARPAMGKTAFALTIAQN  223 (444)
T ss_dssp             CCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            34667889999999999999999998864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.68  E-value=0.015  Score=51.53  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ..|+|.||+|+|||||.+.|+.
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4569999999999999999864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.66  E-value=0.024  Score=46.40  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|+|||||..+|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            44578999999999999999999764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.62  E-value=0.018  Score=54.53  Aligned_cols=29  Identities=34%  Similarity=0.457  Sum_probs=25.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++.+++|.||+|+|||||++.++...
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            55778899999999999999999998644

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.61  E-value=0.0063  Score=47.99  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=6.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ....|+|.|++|+|||||..+|...
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEC-----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.59  E-value=0.02  Score=56.33  Aligned_cols=25  Identities=36%  Similarity=0.453  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+++|.||+|||||||++.|+-..
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCC
Confidence            4679999999999999999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.59  E-value=0.12  Score=45.52  Aligned_cols=27  Identities=26%  Similarity=0.242  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+.+-.|+|+|.+|+|||||..+|...
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            355568999999999999999999754

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=94.54  E-value=0.013  Score=53.95  Aligned_cols=28  Identities=25%  Similarity=0.159  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +..+.|+|.|+-||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3457899999999999999999999875

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.54  E-value=0.028  Score=49.63  Aligned_cols=34  Identities=24%  Similarity=0.089  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc---CC--ceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF---SG--EAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~~--~VIS~Ds  166 (251)
                      ...|++.|++|+||||++..+|..+   |.  .++.+|.
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3568999999999999999988764   32  3556664

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.53  E-value=0.038  Score=51.32  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+.|+|+|.+|+|||||..+|....
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~   47 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGER   47 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34689999999999999999997643

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.52  E-value=0.023  Score=52.17  Aligned_cols=28  Identities=11%  Similarity=0.353  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+.+.+|.||+|+|||||..++.--++
T Consensus        24 ~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           24 GESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3457999999999999999999976554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.47  E-value=0.017  Score=61.16  Aligned_cols=31  Identities=19%  Similarity=0.336  Sum_probs=27.5

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      -..+++..++|+||||||||||++.|...+.
T Consensus       439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~  469 (1321)
T 4f4c_A          439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYD  469 (1321)
T ss_dssp             EEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred             EeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence            3457889999999999999999999998775

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.43  E-value=0.019  Score=50.78  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+.+|+||+|+|||+|..+|.-
T Consensus        25 g~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           25 RVTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHH
Confidence            4899999999999999999984

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.41  E-value=0.028  Score=47.95  Aligned_cols=27  Identities=22%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|.+|+|||||..+|...-
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.37  E-value=0.024  Score=52.28  Aligned_cols=27  Identities=19%  Similarity=0.412  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++.+++|.||+|+|||+||..++...
T Consensus        72 ~~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           72 PRGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            566799999999999999999998653

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.33  E-value=0.029  Score=52.08  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=21.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..++|.|++|||||+++..+++.+
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHH
Confidence            389999999999999999998766

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.32  E-value=0.03  Score=47.86  Aligned_cols=27  Identities=19%  Similarity=0.206  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+++|.+|+|||||...|....
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.25  E-value=0.026  Score=49.80  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|+|++|+|||||..+|...
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34457999999999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=94.17  E-value=0.015  Score=56.72  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDL  153 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~L  153 (251)
                      ..+++.+++|+||+|||||||++.+
T Consensus       344 ~I~~Ge~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          344 KIPLGTFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             EEETTSEEEEECSTTSSHHHHHTTT
T ss_pred             EecCCCEEEEEeeCCCCHHHHHHHH
Confidence            4467789999999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	99.42
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.41
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.29
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.29
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.24
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.74
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.73
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.73
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.72
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.68
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.67
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.65
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	98.59
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.59
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.56
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.55
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.51
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.49
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.47
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.46
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.46
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.46
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.44
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.43
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.41
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.41
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.4
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.39
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.36
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.36
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.29
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.27
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.27
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.27
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.26
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.26
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.25
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.18
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.16
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.15
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.05
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.01
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.95
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.92
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.89
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.88
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.82
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.82
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.82
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.81
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.8
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.79
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.79
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.78
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.77
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.77
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.77
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.72
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.7
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.69
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.68
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.67
d1okkd2	207	GTPase domain of the signal recognition particle r	97.63
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.62
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.61
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.6
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.57
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.56
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.55
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.48
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.46
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.45
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.44
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.42
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.38
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.31
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.27
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.25
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.25
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.25
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.21
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.17
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.15
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.15
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.12
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.1
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.06
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.06
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.04
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.03
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.99
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.97
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.96
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.93
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.9
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.9
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.86
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.77
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.77
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.7
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.69
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.69
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.69
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.63
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.63
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.62
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.61
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.6
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.55
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.55
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.53
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.53
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.51
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.51
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.5
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.49
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.49
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.49
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.48
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.43
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.42
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.41
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.38
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.33
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.32
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.31
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.3
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.27
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.26
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.2
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.19
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	96.19
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.17
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.11
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.1
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.1
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.09
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.08
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.08
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.07
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.99
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.98
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.96
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.93
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.92
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.9
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.89
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.87
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.85
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.84
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.77
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.73
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.71
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.64
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.63
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.62
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.61
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.6
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.6
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.6
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.54
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.54
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.49
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	95.49
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.47
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.45
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.44
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.38
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.32
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.26
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.25
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.21
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.19
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.17
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.17
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.16
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.15
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.08
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.07
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.07
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.07
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.07
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.06
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.02
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.02
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.98
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.93
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.93
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.91
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.85
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.84
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.76
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.74
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.73
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.72
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.72
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.72
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.68
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.67
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.67
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.63
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.62
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.59
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.59
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.58
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.58
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.56
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.55
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	94.54
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.45
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.36
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.28
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.26
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.26
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.22
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.18
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.13
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.11
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	93.89
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.8
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	93.78
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.77
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.67
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.65
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.62
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.33
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.11
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.09
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.09
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.09
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.97
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.94
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.81
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	92.78
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	92.49
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.18
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.1
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.97
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	91.62
d1xpua3	289	Transcription termination factor Rho, ATPase domai	89.44
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	88.5
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	88.46
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.72
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	86.87
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	86.22
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	86.02
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	85.59
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.57
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	85.44
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	85.4
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	85.34
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.67
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.1
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	82.5
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	82.39
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.79
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	81.52
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.42
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	81.11
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	80.76
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	80.71
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	80.55
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	80.19
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	80.05

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.8e-15  Score=120.12  Aligned_cols=88  Identities=20%  Similarity=0.287  Sum_probs=70.3

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH-
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA-  211 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A-  211 (251)
                      .|+|+|+||||||||||.++|.++++..+.        .-.+++|++|+++|.+|++|||++..+|.+....+.|++++ 
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~--------~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~   74 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFA--------YPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGS   74 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTEE--------CCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCcCee--------eccccccCCCCCccccCccceeeehhhhhhheecCceEEEee
Confidence            468999999999999999999998864432        22467999999999999999999988887766666665554 


Q ss_pred             ---------HHHHHHHHHcCCcEEEE
Q 045245          212 ---------LRAIDKIIENGHLHIIV  228 (251)
Q Consensus       212 ---------~k~I~eI~~~Gk~PILV  228 (251)
                               ++.++++.++|+.+|+.
T Consensus        75 ~~g~~YGt~~~~i~~~~~~g~~~ild  100 (178)
T d1kgda_          75 HEDAMYGTKLETIRKIHEQGLIAILD  100 (178)
T ss_dssp             ETTEEEEEEHHHHHHHHHTTCEEEEE
T ss_pred             ecccceeeeeecccchhccCceEEec
Confidence                     58899999999999985

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=9e-15  Score=122.80  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=75.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA  211 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A  211 (251)
                      ++++|+|+||||||||||.+.|.+.++..-+       ....+.+|++|+++|.+|++|||++..+|.+.+..++|++++
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~-------~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~   73 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDT-------QVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA   73 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTE-------EECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCCccCc-------eEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEE
Confidence            3689999999999999999999999863211       233577999999999999999999999988877766666654


Q ss_pred             ----------HHHHHHHHHcCCcEEEEc
Q 045245          212 ----------LRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       212 ----------~k~I~eI~~~Gk~PILVG  229 (251)
                                ++.+.+.++.|+.+|+..
T Consensus        74 ~~~g~~YGt~~~~v~~~~~~g~~~ildi  101 (205)
T d1s96a_          74 EVFGNYYGTSREAIEQVLATGVDVFLDI  101 (205)
T ss_dssp             EETTEEEEEEHHHHHHHHTTTCEEEEEC
T ss_pred             EECCceeccccchHHHHHhcCCceeecC
Confidence                      688999999999999954

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.1e-13  Score=112.30  Aligned_cols=96  Identities=16%  Similarity=0.229  Sum_probs=72.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH---
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH---  210 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~---  210 (251)
                      +.|+|+||||||||||++.|+++++..+-        ...+++|+.|+++|.+|+.|||++..++.+....++|.++   
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~--------~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~   73 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG--------FSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQF   73 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEE--------ECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCccee--------EEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEE
Confidence            46899999999999999999999875333        2346799999999999999999998887665444444433   


Q ss_pred             -------HHHHHHHHHHcCCcEEEEcccHHHHHHH
Q 045245          211 -------ALRAIDKIIENGHLHIIVGGSNTYIEAL  238 (251)
Q Consensus       211 -------A~k~I~eI~~~Gk~PILVGGTglYlkaL  238 (251)
                             ....+......|+.+|+.+- .--++.+
T Consensus        74 ~g~~Yg~~~~~i~~~~~~g~~~i~~~~-~~~~~~l  107 (186)
T d1gkya_          74 SGNYYGSTVASVKQVSKSGKTCILDID-MQGVKSV  107 (186)
T ss_dssp             TTEEEEEEHHHHHHHHHHTSEEEEECC-HHHHHHH
T ss_pred             ccceeecchhhHHHHhcCCCeEEecch-HHHHHHH
Confidence                   36788888888998777643 3344444

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=1.5e-13  Score=110.09  Aligned_cols=89  Identities=17%  Similarity=0.152  Sum_probs=68.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH----
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC----  208 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~----  208 (251)
                      +++|+|+||+|||||||++.|.++++..         +...+++|++|+++|.+|+.|||++..++.+....+.|.    
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~---------~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~   72 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNL---------HFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAE   72 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTC---------EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCC---------eEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhh
Confidence            5799999999999999999999998632         233567999999999999999999988776643333222    


Q ss_pred             --------HHHHHHHHHHHHcCCcEEEEcc
Q 045245          209 --------EHALRAIDKIIENGHLHIIVGG  230 (251)
Q Consensus       209 --------e~A~k~I~eI~~~Gk~PILVGG  230 (251)
                              ......+.+....|+.+++.+-
T Consensus        73 ~~~~~~~~g~~~~~~~~~~~~g~~~i~~~~  102 (182)
T d1znwa1          73 IHGGLHRSGTLAQPVRAAAATGVPVLIEVD  102 (182)
T ss_dssp             EGGGTEEEEEEHHHHHHHHHHTCCEEEECC
T ss_pred             cccCccccccccchhhhhhhcCCccccccc
Confidence                    2235677788888988887643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=5.4e-13  Score=108.95  Aligned_cols=97  Identities=15%  Similarity=0.147  Sum_probs=73.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH----
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH----  210 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~----  210 (251)
                      +|+|+||||||||||+++|+++++.....        ..+.+|+.|+++|.++..|||++..++.+....+.|.++    
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~~--------~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~   73 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSIFGF--------SVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFS   73 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTTEEE--------CCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEET
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCceeE--------EEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEc
Confidence            58899999999999999999999754332        346799999999999999999998777665544444432    


Q ss_pred             ------HHHHHHHHHHcCCcEEEEcccHHHHHHHHc
Q 045245          211 ------ALRAIDKIIENGHLHIIVGGSNTYIEALVE  240 (251)
Q Consensus       211 ------A~k~I~eI~~~Gk~PILVGGTglYlkaLl~  240 (251)
                            ..+.++++...|+.+++.. ....++.+-.
T Consensus        74 ~~~Yg~~~~~v~~~~~~g~~~~~~~-~~~~~~~l~~  108 (190)
T d1lvga_          74 GNLYGTSKEAVRAVQAMNRICVLDV-DLQGVRSIKK  108 (190)
T ss_dssp             TEEEEEEHHHHHHHHHTTCEEEEEC-CHHHHHHHTT
T ss_pred             CcceecccchhhhhhcCCCceeecc-hHhhhhhhhh
Confidence                  3677888889998877755 3444555443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.74  E-value=2.7e-09  Score=80.62  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=34.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceec
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYK  171 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk  171 (251)
                      -.|.|+|+||+||||||||++||++++...++.|...+..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~~~   45 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF   45 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHHhh
Confidence            3588999999999999999999999999999887765433

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.5e-09  Score=79.18  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=31.0

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|.|+|+||+||||||+|+.||++++.+++..|..
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~   36 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE   36 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEeechh
Confidence            35788889999999999999999999999887654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.73  E-value=2.7e-09  Score=84.85  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=35.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..++|++|+|+||+||||||+|+.||+++|...|+.|.+
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~   40 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL   40 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhH
Confidence            357889999999999999999999999999999998654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.72  E-value=1.1e-08  Score=78.04  Aligned_cols=35  Identities=14%  Similarity=0.221  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      .+++|+|+||+||||||+|+.|+++++...++.|.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~   37 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS   37 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecH
Confidence            46899999999999999999999999988776654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=8.6e-09  Score=78.81  Aligned_cols=38  Identities=13%  Similarity=0.380  Sum_probs=34.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..++++++|+||+||||||+|+.|+++++.+.++.|.+
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~   40 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFL   40 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhh
Confidence            35678999999999999999999999999999998864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.67  E-value=2.4e-08  Score=75.60  Aligned_cols=34  Identities=12%  Similarity=0.222  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ++++|+|+||+||||||+|+.|+++++...++.|
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~   35 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG   35 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEee
Confidence            3579999999999999999999999997765543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=4.4e-09  Score=82.41  Aligned_cols=82  Identities=17%  Similarity=0.237  Sum_probs=52.6

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHHH
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAI  215 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~I  215 (251)
                      |+++|++||||||+++.||++++.+.+..|.+  .            ++..|     .+..++.+......|.+...+.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D~~--i------------e~~~g-----~~i~~~~~~~g~~~~r~~e~~~~   64 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVA--I------------EQRTG-----RSIADIFATDGEQEFRRIEEDVV   64 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH--H------------HHHHS-----SCHHHHHHHHCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeeccc--h------------hhhhh-----hhhhhhhhhhhHHHHHHHHhhhh
Confidence            55669999999999999999999999988753  0            11111     01011111223344555445667


Q ss_pred             HHHHHcCCcEEEEcccHHHHH
Q 045245          216 DKIIENGHLHIIVGGSNTYIE  236 (251)
Q Consensus       216 ~eI~~~Gk~PILVGGTglYlk  236 (251)
                      .++....+..+.+||...+-+
T Consensus        65 ~~~~~~~~~vi~~gg~~~~~~   85 (165)
T d2iyva1          65 RAALADHDGVLSLGGGAVTSP   85 (165)
T ss_dssp             HHHHHHCCSEEECCTTGGGSH
T ss_pred             hhccccccccccccccccccc
Confidence            777777888888887766544

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=2.2e-09  Score=88.91  Aligned_cols=88  Identities=18%  Similarity=0.258  Sum_probs=66.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEecc-CCCCCccCHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGF-VDPEADYPEEEFCE  209 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~-~d~~e~fsag~F~e  209 (251)
                      ..++.|+|+||   ||+|+.++|.++++...        ....+.+|++|+++|.+|++|||++. +.+...+..+.|++
T Consensus         7 ~~~Rpivi~Gp---~K~ti~~~L~~~~p~~f--------~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE   75 (199)
T d1kjwa2           7 HYARPIIILGP---TKDRANDDLLSEFPDKF--------GSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIE   75 (199)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTE--------ECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEE
T ss_pred             CCCCCEEEECc---CHHHHHHHHHHhCccce--------eecccccccCCCCCCCCCcccchhhhHHHHHHHHhhcccee
Confidence            44678899998   59999999999987432        13457899999999999999999953 44554433333333


Q ss_pred             ----------HHHHHHHHHHHcCCcEEEEc
Q 045245          210 ----------HALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       210 ----------~A~k~I~eI~~~Gk~PILVG  229 (251)
                                ...+.++++.++|+.+|+..
T Consensus        76 ~~~~~g~~YGt~~~~i~~~~~~gk~~lldi  105 (199)
T d1kjwa2          76 AGQYNSHLYGTSVQSVREVAEQGKHCILDV  105 (199)
T ss_dssp             EEEETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred             eeeecCCccceeeeEEEehhcCCCcccccc
Confidence                      33688999999999999954

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.59  E-value=9.5e-09  Score=77.99  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.|+|+||+||||||+|+.||++++.++++.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~   38 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDL   38 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHH
Confidence            4577999999999999999999999999988764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=4.4e-08  Score=78.73  Aligned_cols=39  Identities=15%  Similarity=0.226  Sum_probs=35.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ  168 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q  168 (251)
                      .+++.+|+++|++||||||+|++|++..+...||.|.+.
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~   49 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG   49 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHH
Confidence            377889999999999999999999999999999999763

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.55  E-value=2.4e-08  Score=74.95  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCc-eEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGE-AINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~-VIS~Ds~  167 (251)
                      +++|+|+||+||||||+|++|+++++.. +++.|.+
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~   37 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII   37 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHH
Confidence            4789999999999999999999999875 5566653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.51  E-value=1.8e-08  Score=80.52  Aligned_cols=38  Identities=18%  Similarity=0.465  Sum_probs=34.4

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ..++++|+|.||+||||||+|+.||+++|...|+.+.+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~l   42 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDL   42 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHH
Confidence            36779999999999999999999999999999998654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=3.3e-08  Score=78.74  Aligned_cols=37  Identities=22%  Similarity=0.411  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++.++|+|+||+||||||+|+.|++++|...|+.+.+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl   42 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDL   42 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHH
Confidence            5668999999999999999999999999999997543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=4.8e-08  Score=77.23  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +++|+|.||+||||||+|+.||++||.+.||...+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            46999999999999999999999999999997544

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.46  E-value=3.6e-08  Score=78.10  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      |++..|+|+||+||||||+|+.||+++|...|+.+.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gd   36 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGD   36 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence            456677789999999999999999999999999754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.5e-08  Score=78.03  Aligned_cols=35  Identities=20%  Similarity=0.405  Sum_probs=32.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      |++|+|.||+||||||+|+.||++++...|+.+.+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~l   35 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL   35 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHH
Confidence            57899999999999999999999999999987654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.46  E-value=6e-08  Score=73.95  Aligned_cols=38  Identities=24%  Similarity=0.411  Sum_probs=32.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCC-ceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSG-EAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~-~VIS~Ds~  167 (251)
                      .|++..|+|+||+||||||+|+.|+++++. .+++.|.+
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~   40 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL   40 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHH
Confidence            478889999999999999999999999985 56655543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.44  E-value=2.3e-08  Score=78.62  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             EEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      |+|+|++||||||+++.||+++|.+.+..|.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~   34 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFL   34 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCch
Confidence            77889999999999999999999999998864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.43  E-value=3.7e-08  Score=78.20  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +|..|+|+||+||||||+|+.|+++++...|+.|.+
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~   37 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDL   37 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHH
Confidence            456789999999999999999999999999987653

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=9.2e-08  Score=77.01  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCC----------ceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSG----------EAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~----------~VIS~Ds~  167 (251)
                      +|.+|+|+||+||||||+|+.|++.++.          .+++.|.+
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence            3678999999999999999999999863          47888987

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.41  E-value=5.9e-08  Score=76.15  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=30.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +.|+|+||+||||||+|+.||+++|.+.+..|.+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~   36 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIF   36 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhh
Confidence            4577889999999999999999999999999864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.40  E-value=6.7e-08  Score=72.75  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=29.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc-CCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF-SGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~Ds~  167 (251)
                      +++|+|.|||||||||+|++|+++. +..+++.|.+
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~   37 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY   37 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHH
Confidence            4789999999999999999997765 5677877654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.39  E-value=9.7e-08  Score=76.37  Aligned_cols=39  Identities=18%  Similarity=0.365  Sum_probs=33.0

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKG  172 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~  172 (251)
                      ++.+|+|.||+||||||+|+.||++|+.+.+|...+  ||.
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl--~R~   40 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM--YRA   40 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH--HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH--HHH
Confidence            345788999999999999999999999999997543  553

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.36  E-value=1.1e-07  Score=73.82  Aligned_cols=33  Identities=15%  Similarity=0.297  Sum_probs=30.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+|+.||+++|...|+.|.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~l   34 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDM   34 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceechhHH
Confidence            488999999999999999999999999997653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.2e-08  Score=76.80  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      +...++.+|+|+|++||||||+|+.|+++++...++.|
T Consensus        14 ~~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~   51 (195)
T d1x6va3          14 RGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY   51 (195)
T ss_dssp             SCSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCcc
Confidence            34457889999999999999999999999976655544

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.29  E-value=1.7e-07  Score=70.54  Aligned_cols=30  Identities=17%  Similarity=0.387  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE  160 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~  160 (251)
                      .++.+|.|+|++||||||+|++||++++..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~   33 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ   33 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            566889999999999999999999998643

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.27  E-value=2e-07  Score=75.70  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=31.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC--ceEecCCc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG--EAINSNKI  167 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~--~VIS~Ds~  167 (251)
                      ....|+.|++.||||+|||++|++||++++.  ..+++|.+
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~   68 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   68 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHH
Confidence            4456778999999999999999999999864  56666653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.27  E-value=2.3e-07  Score=73.04  Aligned_cols=33  Identities=15%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+|+.||++++...++++.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdl   34 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDM   34 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeHHHH
Confidence            578999999999999999999999999987543

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.27  E-value=2.4e-07  Score=74.95  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      +...|+|.||+||||||+|+.||++++...|+.|.+
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdl   40 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDL   40 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHH
Confidence            445777889999999999999999999999998654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.26  E-value=3.5e-07  Score=69.22  Aligned_cols=27  Identities=30%  Similarity=0.257  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .|+|+|.||+||||||+++.|+++++.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            379999999999999999999998853

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.26  E-value=1.4e-07  Score=72.91  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ...++.+|+|+||+||||||||+.|++.++.
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3355667889999999999999999998763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=2e-07  Score=73.15  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=30.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+|+.|+++++...|++|.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l   34 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGEL   34 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEchHHH
Confidence            578899999999999999999999999998664

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=4.7e-07  Score=70.88  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=29.7

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+|+.|+++++...++++.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~l   34 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDM   34 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceechhhH
Confidence            577899999999999999999999999987554

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=5.6e-07  Score=71.02  Aligned_cols=33  Identities=15%  Similarity=0.361  Sum_probs=29.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .|+|.||+||||||+|+.||++++...|++|.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~   36 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDM   36 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEecccc
Confidence            577889999999999999999999999998654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=3.9e-07  Score=71.28  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=29.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      |.+|+++|.|||||||+|++|++.++     ..+++.|.+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~   41 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY   41 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccce
Confidence            56899999999999999999999875     347777754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=1.1e-06  Score=69.32  Aligned_cols=34  Identities=12%  Similarity=0.261  Sum_probs=30.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      |.+|+|+|++||||||+|..| +++|..++++|.+
T Consensus         3 p~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~   36 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALL-RSWGYPVLDLDAL   36 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHH
Confidence            568899999999999999998 5689999999886

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.01  E-value=1.2e-06  Score=66.63  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      +|+|+|.|++||||||+++.|++.++.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999998863

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=2.2e-06  Score=64.60  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++.|+|++|||||||+++|++++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            689999999999999999999865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=3.1e-06  Score=74.61  Aligned_cols=72  Identities=17%  Similarity=0.087  Sum_probs=47.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc--------CCceEecCCcceecccccccCCCCccccC-----CCCeEEecc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF--------SGEAINSNKIQVYKGLDIATNKVTASERQ-----GVPHHLLGF  195 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l--------~~~VIS~Ds~QvYk~lsIgTakP~~eEr~-----gvpHhLVD~  195 (251)
                      +..+|.+|.|+|++|||||||+..|.+.+        ...++|.|.+  |..         .+|+.     .-.|-++..
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf--Y~t---------~~~r~~L~~~~~~~pl~~~   91 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF--YLT---------HEDQLKLNEQFKNNKLLQG   91 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG--BCC---------HHHHHHHHHHTTTCGGGSS
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC--CCC---------HHHHHHHhhhcccccccee
Confidence            44567889999999999999998876543        2457899998  431         12211     112446666


Q ss_pred             CCCCCccCHHHHHHHH
Q 045245          196 VDPEADYPEEEFCEHA  211 (251)
Q Consensus       196 ~d~~e~fsag~F~e~A  211 (251)
                      ..+...+++....+..
T Consensus        92 RG~PgThD~~ll~~~l  107 (286)
T d1odfa_          92 RGLPGTHDMKLLQEVL  107 (286)
T ss_dssp             SCSTTSBCHHHHHHHH
T ss_pred             cCCCcchhHHHHHHHH
Confidence            6777777776555443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=5.7e-06  Score=67.01  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ...+.++|.||+|+||||+|+.||++++..++..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~   83 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ   83 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            4457899999999999999999999998765544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.88  E-value=2.9e-06  Score=66.67  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=29.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      ...+|.+|+|.|+.||||||+++.|++.++...+
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            4467789999999999999999999999976444

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.9e-06  Score=62.82  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      |.|+|+||+|||||||++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            568999999999999999999876

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=5.1e-06  Score=67.24  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      .+-++++||||+|||++|+.||++++...+..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~   66 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVT   66 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCcccc
Confidence            34588999999999999999999999775543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=4.8e-06  Score=67.67  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+|+|+|++||||||+|+.|. ++|..++++|.+
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i   36 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADII   36 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHH
Confidence            489999999999999998875 789999999986

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=4.7e-06  Score=67.47  Aligned_cols=33  Identities=15%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+|+|+|++||||||+|+.|. ++|.+++++|.+
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i   35 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVV   35 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHH
Confidence            689999999999999999885 689999999985

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=1.2e-05  Score=67.85  Aligned_cols=39  Identities=23%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQ  168 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~Q  168 (251)
                      ..+|.+|+++|||||||||.+.+||..+     ...+|++|.+.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR   49 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            3567899999999999999999999655     24589999873

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.79  E-value=1e-05  Score=66.74  Aligned_cols=34  Identities=18%  Similarity=0.432  Sum_probs=29.5

Q ss_pred             hhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          124 RVITMNFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       124 ~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...+++..++.+|.|+|.|||||||||++|++++
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455677889999999999999999999999876

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=7.3e-06  Score=66.49  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAIN  163 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS  163 (251)
                      .++-++++||||+||||+|+.+|++++.+...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~   65 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   65 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            34568899999999999999999999875443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.78  E-value=4.9e-06  Score=72.19  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      +++-+++.||||+|||.||++||+.++...+..|.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~   82 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   82 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhcccc
Confidence            34667889999999999999999999877666554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=7.2e-06  Score=72.73  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=34.0

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcc
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQ  168 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~Q  168 (251)
                      .+...|.+|.|+|++||||||+|+.|++.+.       ..+|+.|.+.
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            3456678999999999999999999998763       3589999984

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.77  E-value=4.2e-06  Score=74.04  Aligned_cols=40  Identities=15%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCccee
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVY  170 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvY  170 (251)
                      .|.++|.|+|+|||||||++++|++.++     ..+|+.|++.-|
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~   46 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRF   46 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            4567999999999999999999988763     359999998533

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.77  E-value=4.4e-06  Score=67.94  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEe-cCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAIN-SNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS-~Ds~  167 (251)
                      +++|+|+|+.||||||+|..|++++|..+++ +|.+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i   36 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPI   36 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHH
Confidence            4789999999999999999999999999998 5644

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.72  E-value=9.6e-06  Score=61.90  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=23.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .|+|+||+|+|||||++.++..++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            5899999999999999999998864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.70  E-value=1.4e-05  Score=67.55  Aligned_cols=34  Identities=24%  Similarity=0.189  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      ++-|++.||+|+|||++|+.||++.+.+++..+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~   73 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS   73 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccccccc
Confidence            4569999999999999999999999988777654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.69  E-value=1.4e-05  Score=67.44  Aligned_cols=38  Identities=29%  Similarity=0.277  Sum_probs=31.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~  167 (251)
                      ..+|.+|+++|||||||||.+-+||..+     ...+|++|.+
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~   50 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF   50 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence            3567899999999999999999998765     2468999986

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.7e-05  Score=67.84  Aligned_cols=36  Identities=25%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      +.++-+++.||+|+|||++|+.||++++.++++.+.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~   78 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG   78 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEh
Confidence            456789999999999999999999999998877765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.67  E-value=1.2e-05  Score=74.04  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      ++=|+++||||||||.||+.||+.++.+.+.+|.-
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT   83 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT   83 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecc
Confidence            45689999999999999999999999887777654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.63  E-value=1.9e-05  Score=66.33  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      +++++|+++|||||||||.+.+||..+.     ..+|++|.+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   45 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF   45 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            5678999999999999999999987652     358899986

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.62  E-value=2.1e-05  Score=66.59  Aligned_cols=38  Identities=24%  Similarity=0.194  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+.++-+++.||+|+|||++|+.||++++..++..|.-
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~   76 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS   76 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhH
Confidence            34566799999999999999999999999988777543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.61  E-value=2e-05  Score=65.91  Aligned_cols=37  Identities=19%  Similarity=0.400  Sum_probs=30.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~  167 (251)
                      .++++|+++|||||||||.+.+||..+     ...++++|.+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   49 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ   49 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            345789999999999999999998765     2469999987

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.60  E-value=1.9e-05  Score=66.54  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI  167 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~  167 (251)
                      .+|.+|+++||||+||||.+.+||..+.     ..+|++|.+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   51 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY   51 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecc
Confidence            5678999999999999999999987652     469999987

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.57  E-value=2.6e-05  Score=61.99  Aligned_cols=28  Identities=21%  Similarity=0.180  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+..++|.||+|+|||++++.|++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.56  E-value=2.7e-05  Score=69.82  Aligned_cols=40  Identities=33%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN  165 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D  165 (251)
                      ..++.|+++.+++.||+|+|||++|..||+.++..+++.+
T Consensus       147 ~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in  186 (362)
T d1svma_         147 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN  186 (362)
T ss_dssp             HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred             HHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence            4567899999999999999999999999999999988753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=2.2e-05  Score=60.61  Aligned_cols=25  Identities=28%  Similarity=0.217  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++++.|+|++|||||||+.+|++++
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3789999999999999999998865

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=3.1e-05  Score=65.71  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=33.5

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK  166 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds  166 (251)
                      +.+.++-|++.||+|+|||++|+.+|.+++..++..+.
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~   74 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG   74 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEH
Confidence            45667789999999999999999999999998887764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=4e-05  Score=66.78  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .++++||||+|||.||+.||+.++.+.+..|.-
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s   86 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS   86 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCeeEeccc
Confidence            688999999999999999999999887777643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.46  E-value=3.6e-05  Score=61.98  Aligned_cols=27  Identities=26%  Similarity=0.392  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .+.++|+||+|+||||+|+.+|++++.
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            345889999999999999999998753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2.4e-05  Score=62.46  Aligned_cols=30  Identities=20%  Similarity=0.147  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEA  161 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~V  161 (251)
                      +.|.|+|.|+.||||||+++.|++.++..-
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~~   30 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDWE   30 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            468999999999999999999999996543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=5.6e-05  Score=63.63  Aligned_cols=38  Identities=18%  Similarity=0.158  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI  167 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~  167 (251)
                      .+.++-+++.||+|+|||++++++|+..+..++..+.-
T Consensus        35 ~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~   72 (258)
T d1e32a2          35 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP   72 (258)
T ss_dssp             CCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred             CCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEch
Confidence            35567799999999999999999999999887776643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.42  E-value=4.2e-05  Score=68.50  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=30.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ  168 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q  168 (251)
                      +.-+++.||||+|||.||++||+.++.+.+-.|.-.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~  103 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATS  103 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcccceeehhhhh
Confidence            345888899999999999999999988888777653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=7e-05  Score=60.27  Aligned_cols=30  Identities=17%  Similarity=0.219  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      ||.|+|.|+-||||||+++.|++.++...+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            689999999999999999999999976544

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.31  E-value=7.5e-05  Score=59.19  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=26.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC----CceEecCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS----GEAINSNK  166 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~----~~VIS~Ds  166 (251)
                      +|+|+||.|||||||..+|.+.+.    ..+|+.|.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~   37 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   37 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCc
Confidence            789999999999999999987653    34666654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.27  E-value=4.4e-05  Score=60.97  Aligned_cols=24  Identities=25%  Similarity=0.206  Sum_probs=21.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .++|.||+|+|||++++.+++.++
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            466789999999999999999874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=7.3e-05  Score=59.52  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=21.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++|+||+|+||||+++.+++++
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            48899999999999999999985

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=7.6e-05  Score=55.73  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.+.++.|+||||+|||+||..+|-..
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4677899999999999999999998653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00037  Score=61.51  Aligned_cols=97  Identities=12%  Similarity=0.050  Sum_probs=49.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYP  203 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fs  203 (251)
                      +..+..+|.|.||||||||||..+|++.+.     ..++..|--.-+.+-.+...+.+..+...-+..++....-..  .
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g--~  127 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSG--H  127 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccc--c
Confidence            345678999999999999999999987652     357777764333333333333333332222333333222222  2


Q ss_pred             HHHHHHHHHHHHHHHHHcCCcEEE
Q 045245          204 EEEFCEHALRAIDKIIENGHLHII  227 (251)
Q Consensus       204 ag~F~e~A~k~I~eI~~~Gk~PIL  227 (251)
                      .+.....+.+.+.-+...|..+||
T Consensus       128 lgg~~~~~~~~~~~~~~~g~d~il  151 (327)
T d2p67a1         128 LGGASQRARELMLLCEAAGYDVVI  151 (327)
T ss_dssp             --CHHHHHHHHHHHHHHTTCSEEE
T ss_pred             cccchhhhhHHHHHHHhcCCCeEE
Confidence            344444555555555566887777

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.21  E-value=0.00012  Score=57.79  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI  162 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI  162 (251)
                      .++.++|.||+|+|||+|+++++++.+....
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~   58 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYI   58 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeE
Confidence            3468999999999999999999998875543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.17  E-value=0.0012  Score=57.93  Aligned_cols=98  Identities=11%  Similarity=0.028  Sum_probs=60.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYP  203 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fs  203 (251)
                      +..+..+|.|+||+|+|||||..+|.+.+     ..-|+..|----+.+=.+.-.+.+..+...-+.-++....-..  .
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~--~  124 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSG--T  124 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCS--S
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccc--c
Confidence            33566899999999999999999999764     2457777764323222222223333333333444444333333  4


Q ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEE
Q 045245          204 EEEFCEHALRAIDKIIENGHLHIIV  228 (251)
Q Consensus       204 ag~F~e~A~k~I~eI~~~Gk~PILV  228 (251)
                      .+.......+.+.-+...|...||+
T Consensus       125 ~gg~~~~~~~~i~~~~~~g~d~iii  149 (323)
T d2qm8a1         125 LGGVAAKTRETMLLCEAAGFDVILV  149 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccchhHHHHHHHHhhccCCCCeEEE
Confidence            6666666677776666678887773

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00012  Score=58.40  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++.|+|.|+.||||||+++.|++.+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999998773

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.15  E-value=0.00055  Score=50.36  Aligned_cols=29  Identities=17%  Similarity=0.403  Sum_probs=24.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      |+.+...|+|+|.+|+|||||.+++...-
T Consensus         1 ~m~ke~kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           1 HMTREMRILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHhCCC
Confidence            45666789999999999999999997653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.0001  Score=59.21  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +-++|.||+|+||||+|+.+|+++
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhh
Confidence            348899999999999999999986

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00012  Score=58.81  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=22.4

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      -+++.||+|+||||+|+.+|++++.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhc
Confidence            3789999999999999999998764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00014  Score=58.13  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      -+++.||+|+||||+|+.++++++
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            377999999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00017  Score=58.86  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++.|+|.|+.||||||+++.|++.+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            568999999999999999999999773

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00089  Score=55.79  Aligned_cols=76  Identities=18%  Similarity=0.182  Sum_probs=45.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCC-CCccCHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDP-EADYPEEEFCEHA  211 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~-~e~fsag~F~e~A  211 (251)
                      +.-++++||+|+|||+++..||++.-.                  ++. ++.+.+.+-+.+|.... ...-..++|.+..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~~------------------~~v-p~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl  103 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRIIN------------------GEV-PEGLKGRRVLALDMGALVAGAKYRGEFEERL  103 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHH------------------TCS-CGGGTTCEEEEECHHHHHTTTCSHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHHh------------------CCC-CHHHcCceEEEeeHHHHhccCCccHHHHHHH
Confidence            345789999999999999999997621                  011 12223323333333321 1122367888888


Q ss_pred             HHHHHHHHHcCCcEEE
Q 045245          212 LRAIDKIIENGHLHII  227 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PIL  227 (251)
                      +..++++.+.....||
T Consensus       104 ~~il~e~~~~~~~iIL  119 (195)
T d1jbka_         104 KGVLNDLAKQEGNVIL  119 (195)
T ss_dssp             HHHHHHHHHSTTTEEE
T ss_pred             HHHHHHHhcCCCcEEE
Confidence            8888887654433333

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.0016  Score=50.31  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.|+|.|++++|||||..+|..+-
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.99  E-value=0.00082  Score=60.16  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...-+|+|+|||||||||....+.+..+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            3446899999999999999999988775

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.0003  Score=57.29  Aligned_cols=28  Identities=25%  Similarity=0.303  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      +++.|+|.|+-||||||+++.|++.+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            5789999999999999999999999864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.96  E-value=0.00024  Score=58.55  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=37.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVT  181 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~  181 (251)
                      .++-++|.|++|+||||+|..|.++ +..+++=|...+++.=+-..+.|+
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v~~~~~~~~l~~~~p   62 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDDAIEIYRLGNRLFGRAQ   62 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEEEEEEETTEEEEEEC
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCCeEEEEEECCEEEEcCC
Confidence            3467999999999999999999864 888998888877765443334333

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.93  E-value=0.00026  Score=56.13  Aligned_cols=28  Identities=29%  Similarity=0.462  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.+.+++|.||||||||++|..++.+.
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4778899999999999999999998653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.90  E-value=0.0003  Score=61.35  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             CCCe-EEEEEcCCccCHHHHHHHHHHhc---CCceEecCCc
Q 045245          131 NKKK-VVFVMGATATGKTKLSIDLAIHF---SGEAINSNKI  167 (251)
Q Consensus       131 ~k~k-iIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~  167 (251)
                      .+|+ .+++.||||+|||.+|+.||+.+   +..++..|.-
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~   90 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   90 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecc
Confidence            3444 67899999999999999999987   3456666543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.0002  Score=55.83  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=24.6

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.+++.++.|.||+|||||+|+..++..
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3578899999999999999999998753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=0.0003  Score=55.04  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +|+|.|+-||||||+++.|++.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999773

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.77  E-value=0.00051  Score=56.40  Aligned_cols=95  Identities=18%  Similarity=0.089  Sum_probs=51.1

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcC---CceEecCCcceecc----cccccCCCCccccCCCCeEEeccCCCCCccCHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFS---GEAINSNKIQVYKG----LDIATNKVTASERQGVPHHLLGFVDPEADYPEE  205 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~QvYk~----lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag  205 (251)
                      .+.++|.||+|+|||.|+.++++++.   ..++..+.-.....    +.-.....-.+.....+--.+|..+.-.  .-.
T Consensus        36 ~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~--~~~  113 (213)
T d1l8qa2          36 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS--GKE  113 (213)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT--TCH
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhc--Cch
Confidence            34589999999999999999998763   22222211110000    0000000001223355667777654322  223


Q ss_pred             HHHHHHHHHHHHHHHcCCcEEEEc
Q 045245          206 EFCEHALRAIDKIIENGHLHIIVG  229 (251)
Q Consensus       206 ~F~e~A~k~I~eI~~~Gk~PILVG  229 (251)
                      ++.+.....++.+.+.|+..|+.+
T Consensus       114 ~~~~~lf~lin~~~~~~~~iiits  137 (213)
T d1l8qa2         114 RTQIEFFHIFNTLYLLEKQIILAS  137 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHhhccceEEEec
Confidence            444445667888877777655544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.0012  Score=56.94  Aligned_cols=76  Identities=13%  Similarity=0.117  Sum_probs=44.3

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC-ccCHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA-DYPEEEFCEHA  211 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e-~fsag~F~e~A  211 (251)
                      +.-++++||+|+|||+++..||++....                  . .++...+..-..+|....-. .-..++|-+..
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~~~------------------~-vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~   99 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIVQG------------------D-VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRF   99 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHT------------------C-SCGGGTTCEEEECCCC---CCCCCSSCHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHHhC------------------C-cccccccceeEEeeechHhccCccchhHHHHH
Confidence            3567799999999999999999976211                  0 01122222223333322211 11267777777


Q ss_pred             HHHHHHHHHcCCcEEE
Q 045245          212 LRAIDKIIENGHLHII  227 (251)
Q Consensus       212 ~k~I~eI~~~Gk~PIL  227 (251)
                      +..++++.+.++..++
T Consensus       100 ~~i~~~~~~~~~iIlf  115 (268)
T d1r6bx2         100 KALLKQLEQDTNSILF  115 (268)
T ss_dssp             HHHHHHHSSSSCEEEE
T ss_pred             HHHHHHhhccCCceEE
Confidence            7778777666665544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00033  Score=59.56  Aligned_cols=29  Identities=17%  Similarity=0.382  Sum_probs=26.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++..++|+||||||||||++.|+.-+.
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            47788999999999999999999988764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.0017  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .|+|.|++++|||||..+|....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00054  Score=53.86  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=24.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.+++.+++|.||||+|||++|..++..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4588899999999999999999999853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.69  E-value=0.00041  Score=58.84  Aligned_cols=30  Identities=13%  Similarity=0.258  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++..++|+||+|||||||++.|+.-+.
T Consensus        24 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            347789999999999999999999987653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00045  Score=58.85  Aligned_cols=30  Identities=17%  Similarity=0.336  Sum_probs=26.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++..++|+||+|||||||++.|..-+.
T Consensus        36 ~i~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          36 TLRPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            447889999999999999999999987664

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.63  E-value=0.00045  Score=58.95  Aligned_cols=30  Identities=17%  Similarity=0.363  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++..++|+||+|||||||++.|+.-+.
T Consensus        37 ~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          37 KIPAGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcccC
Confidence            347788999999999999999999987553

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.62  E-value=0.00079  Score=55.24  Aligned_cols=39  Identities=21%  Similarity=0.447  Sum_probs=32.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceec
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYK  171 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk  171 (251)
                      .++-|+|.|++|+||||+|.+|.++ +..+|+=|..-+.+
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~~i~~   51 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIADDRVDVYQ   51 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeEEEEE
Confidence            3467999999999999999999875 77888777776654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.61  E-value=0.0023  Score=48.09  Aligned_cols=26  Identities=19%  Similarity=0.484  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ++...|+|+|.+|||||||..+|...
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34467899999999999999999764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.60  E-value=0.00059  Score=50.97  Aligned_cols=27  Identities=26%  Similarity=0.223  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++...|+|.|++|||||||..+|....
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455689999999999999999996643

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.55  E-value=0.00076  Score=49.45  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|++|||||||..+|...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00066  Score=57.72  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=25.7

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|||||||.+.++--..
T Consensus        22 ~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          22 DIHEGEFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            347788999999999999999999977553

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.53  E-value=0.00058  Score=57.93  Aligned_cols=29  Identities=21%  Similarity=0.308  Sum_probs=25.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++.+++|.||+|||||||.+.|+--.
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            44778899999999999999999887654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.00068  Score=58.62  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=26.4

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|||||||++.|+-.+.
T Consensus        58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          58 NIEKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            447789999999999999999999987664

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.51  E-value=0.00076  Score=53.71  Aligned_cols=29  Identities=34%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+++.+++|.||||+|||+|+..+|...
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35778899999999999999999998874

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00078  Score=51.94  Aligned_cols=33  Identities=30%  Similarity=0.233  Sum_probs=26.2

Q ss_pred             eEEEEEcC-CccCHHHHHHHHHHhc---CCceEecCC
Q 045245          134 KVVFVMGA-TATGKTKLSIDLAIHF---SGEAINSNK  166 (251)
Q Consensus       134 kiIvIsGp-TGSGKTTLA~~LAk~l---~~~VIS~Ds  166 (251)
                      |.++|+|. ||+||||++..||..+   |-.++-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            78999998 6999999999998866   445555554

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00072  Score=55.27  Aligned_cols=27  Identities=22%  Similarity=0.274  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      +..++|+||+|+|||++|+.+++.++.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            456899999999999999999998753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.49  E-value=0.0012  Score=53.61  Aligned_cols=39  Identities=13%  Similarity=0.332  Sum_probs=33.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceec
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYK  171 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk  171 (251)
                      .++-|+|.|++|+||||+|..|.++ +..+|+=|..-+.+
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~~~~~   52 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEIRE   52 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeEEEEE
Confidence            4468999999999999999999887 77888878777764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.49  E-value=0.00046  Score=56.59  Aligned_cols=30  Identities=27%  Similarity=0.340  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.+++|.||+|||||||.+.|+.-+.
T Consensus        23 ~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          23 TIEKGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             EEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcccc
Confidence            346778999999999999999999987654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00064  Score=58.09  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=25.5

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.+++|.||+|||||||++.|+--..
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          27 HVPAGQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             EECSSCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            347788999999999999999999976543

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.48  E-value=0.00078  Score=52.08  Aligned_cols=28  Identities=18%  Similarity=0.342  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.+.+++|.|+||+|||+++..+|-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4677899999999999999999998754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.43  E-value=0.00081  Score=51.97  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+++.+++|.|+||+|||+||..++-
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            47789999999999999999988753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.42  E-value=0.00063  Score=59.76  Aligned_cols=25  Identities=32%  Similarity=0.390  Sum_probs=22.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +-|+|+|||||||||+.++|....+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            3489999999999999999998876

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.41  E-value=0.0008  Score=57.44  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++-++.|.||+|||||||++.|+--..
T Consensus        26 i~~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          26 VKDGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            36778999999999999999999987554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0013  Score=53.28  Aligned_cols=28  Identities=11%  Similarity=0.169  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .-+..+++.||+|+||||+|+.+|+.+.
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            3456799999999999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.33  E-value=0.0008  Score=57.14  Aligned_cols=29  Identities=21%  Similarity=0.227  Sum_probs=25.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++-++.|.||+|||||||.+.|+--+.
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            36778999999999999999999987664

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.32  E-value=0.0013  Score=49.87  Aligned_cols=27  Identities=26%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ...+...|+|+|++|||||||..+|..
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            335567899999999999999999854

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.31  E-value=0.0011  Score=56.52  Aligned_cols=29  Identities=17%  Similarity=0.187  Sum_probs=25.6

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      .+++.++.|.||+|||||||.+.|+--+.
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            47778999999999999999999987664

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.30  E-value=0.0012  Score=48.83  Aligned_cols=27  Identities=15%  Similarity=0.073  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +....+|.+|||||||+++..+..+.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~   33 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQG   33 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTT
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            457889999999999999987766665

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.27  E-value=0.001  Score=57.02  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=25.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ...++-++.|.||+|||||||++.|+--.
T Consensus        24 ~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          24 QARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            34778899999999999999999997544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.26  E-value=0.0048  Score=47.76  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=20.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      +.|+|+|+||||||||.++|..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            4699999999999999999974

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.20  E-value=0.00091  Score=57.30  Aligned_cols=30  Identities=20%  Similarity=0.169  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +..++.+++|.||+|||||||.+.|+--..
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          27 NIENGERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHcCcC
Confidence            347778999999999999999999987553

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.19  E-value=0.00068  Score=58.11  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++..++|+||||||||||++.|+.-+.
T Consensus        40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          40 SIEKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            447789999999999999999998877554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.19  E-value=0.005  Score=50.31  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++|+|++.||||..|.+|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            478999999999999999986654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.17  E-value=0.0041  Score=55.99  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             EEEEcCCccCHHHHHHHHHHhc
Q 045245          136 VFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++++|++|+|||+|+..||++.
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHH
Confidence            4667999999999999999875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.11  E-value=0.0014  Score=58.12  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=22.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.||||+|||.||+.||.+.+
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc
Confidence            4566789999999999999999975

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.10  E-value=0.0053  Score=46.98  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|+|.+|+|||||.++|...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999865

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.10  E-value=0.0026  Score=51.32  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      .++-+|++.|+=||||||+++.+++.++.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            45678999999999999999999999985

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.09  E-value=0.0011  Score=56.51  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhcC
Q 045245          135 VVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      =++|.||+|+|||++|+.+++-++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCC
Confidence            489999999999999999999875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0025  Score=51.81  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK  166 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds  166 (251)
                      +.+++|+++|--|+||||+|..||..+   |  .-+|.+|-
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            456799999999999999888887765   2  35788884

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.08  E-value=0.0013  Score=55.62  Aligned_cols=30  Identities=23%  Similarity=0.311  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..+++.++.|.||+|+|||||.+.|+--+.
T Consensus        28 ~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            347788999999999999999999987654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.07  E-value=0.0019  Score=48.60  Aligned_cols=24  Identities=17%  Similarity=0.202  Sum_probs=21.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..|+|.|++|||||||..+|....
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            578999999999999999997643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.99  E-value=0.0018  Score=55.43  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=21.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      -+++|.||+|||||||.+.|+--..
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC
Confidence            3778999999999999999988664

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.98  E-value=0.002  Score=54.36  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=33.6

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS  164 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~  164 (251)
                      ++.||.+-++|.||+.+|||.+|..|.+-+++.+++.
T Consensus        48 ~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~   84 (205)
T d1tuea_          48 KGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   84 (205)
T ss_dssp             HTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             cCCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEec
Confidence            5679999999999999999999999999998888764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0021  Score=48.68  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +...|+|.|.+|+|||+|..++...
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhC
Confidence            4467999999999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0025  Score=48.57  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+.-.|+|.|.+|+|||+|..++...
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            44457999999999999999998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0014  Score=54.79  Aligned_cols=27  Identities=19%  Similarity=0.352  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++-++.|.||+|+|||||.+.|+--
T Consensus        22 I~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          22 VRAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            367789999999999999999999763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.92  E-value=0.0027  Score=53.34  Aligned_cols=28  Identities=14%  Similarity=0.169  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .....+|+|.|+.|+||||||+.+.++.
T Consensus        41 ~~~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          41 DLDSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             TSSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhh
Confidence            3456799999999999999999997753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.90  E-value=0.0017  Score=55.09  Aligned_cols=29  Identities=24%  Similarity=0.411  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ..++.++.|.||+|||||||++.|+--+.
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            36778999999999999999999987654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0023  Score=49.47  Aligned_cols=26  Identities=31%  Similarity=0.337  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      |+...|+|.|.+|+|||+|..++.+.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            66678999999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0025  Score=47.44  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.|+|.|++++|||||..+|..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999854

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.84  E-value=0.0025  Score=49.96  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      |-|+|.|+++||||||..+|...-
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.84  E-value=0.0025  Score=48.41  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=19.4

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .|+|+|+++||||||.++|....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999997543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.77  E-value=0.0021  Score=48.83  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -|+|+|+|++|||||..+|..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.002  Score=48.22  Aligned_cols=26  Identities=19%  Similarity=0.179  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|+|.|++|||||.++|..+
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44578999999999999999999654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.71  E-value=0.0026  Score=53.67  Aligned_cols=30  Identities=13%  Similarity=0.226  Sum_probs=26.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ...++.++.|.||+|+|||||.+.|+-.+.
T Consensus        24 ~v~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          24 EIEEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346778999999999999999999987765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.64  E-value=0.0029  Score=53.59  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++..+++|+||+|||||..+|..+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence            357889999999999999999976543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0037  Score=47.28  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|++.|++|+|||||..++...
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999999853

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.62  E-value=0.0037  Score=50.96  Aligned_cols=27  Identities=19%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..++.+++|.|+||+|||+++..++-.
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            355679999999999999999888754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.60  E-value=0.0031  Score=47.69  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=20.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|+++||||||..++...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999999764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.60  E-value=0.0041  Score=47.45  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +...|+|+|.+++|||||..+|..+
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3467999999999999999999754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0036  Score=47.90  Aligned_cols=24  Identities=33%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.|+|.|.+|+|||+|..++....
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            567889999999999999998753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.54  E-value=0.0041  Score=47.39  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.|+++|.+|+|||||..++...
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            36899999999999999999764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0039  Score=47.14  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.|+|.|.+|+|||+|..++...
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57899999999999999999864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.004  Score=47.91  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.8

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|++|+|||||+.++...
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5889999999999999999753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.00082  Score=49.53  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.+|+||+|||||||..+|.--+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999997554

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.014  Score=44.90  Aligned_cols=25  Identities=16%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+-+|.||-.|||||-..+.+..+
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHH
Confidence            4677899999999999988887765

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.47  E-value=0.0027  Score=56.25  Aligned_cols=30  Identities=17%  Similarity=0.161  Sum_probs=26.2

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++.....|+|-|+-||||||+++.|++.++
T Consensus         2 ~~~~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           2 HMVTIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCCceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            445567899999999999999999999875

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0043  Score=50.19  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHh
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +.+.+|.|++|+|||+|+..||..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            568999999999999999998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.44  E-value=0.0038  Score=47.84  Aligned_cols=26  Identities=31%  Similarity=0.515  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .+...|+|.|++|||||||..++...
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            45578999999999999999998543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0047  Score=47.22  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|+|++|+|||+|+.++...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5889999999999999998754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0044  Score=46.93  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=19.8

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|.+|+|||+|..++...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999999764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.38  E-value=0.0051  Score=46.14  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|.+|+|||||..++...
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999999863

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.0054  Score=46.44  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHH
Q 045245          135 VVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .|+|.|++|||||||..++..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            689999999999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0054  Score=46.63  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|.+|+|||||..++.+.
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999999864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0051  Score=46.60  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHh
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ...|+|.|.+|+|||||..++...
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            346889999999999999999863

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.25  E-value=0.0046  Score=47.15  Aligned_cols=27  Identities=30%  Similarity=0.470  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+...|+|.|+++||||||..++....
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            444679999999999999999997543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0055  Score=46.33  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHH
Q 045245          135 VVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .|+|.|.+|+|||||..++..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0061  Score=46.29  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|.+|+|||||..++...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46889999999999999999854

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0057  Score=46.16  Aligned_cols=23  Identities=17%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .|++.|.+|+|||||..++...-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            68999999999999999997643

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0063  Score=46.26  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|.+|||||||+.++...
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999999753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0054  Score=46.17  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.7

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|+|.|++|||||.++|..+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0064  Score=45.65  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|.+|+|||+|.+++...
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999999853

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0064  Score=46.51  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|++|+|||||+.++...
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999998763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.15  E-value=0.004  Score=47.75  Aligned_cols=22  Identities=23%  Similarity=0.200  Sum_probs=19.3

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -|+|+|++++|||||.++|..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.007  Score=46.11  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|+|++|+|||+|..++...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0068  Score=46.98  Aligned_cols=23  Identities=35%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|.+|+|||+|..++...
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhhC
Confidence            45999999999999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.07  E-value=0.0047  Score=47.25  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             EEEEcCCccCHHHHHHHHHHh
Q 045245          136 VFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk~  156 (251)
                      |+|+|.|+||||||..+|...
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999643

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.07  E-value=0.0037  Score=44.55  Aligned_cols=21  Identities=19%  Similarity=0.135  Sum_probs=17.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSI  151 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~  151 (251)
                      .+++..+|.+|||||||..+.
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            456788999999999996664

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.007  Score=45.75  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.|+|.|.+|+|||||..++...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0082  Score=45.90  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|.+|+|||+|..++...
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0074  Score=45.67  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|.+|+|||+|..++...
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999999763

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.0077  Score=48.89  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=29.3

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK  166 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds  166 (251)
                      ..+..++|+++|-=|+||||+|..||..+   +  .-+|-+|.
T Consensus        16 ~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          16 ARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             HTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            35677899999999999999988877655   2  34666774

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0079  Score=45.79  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.8

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|+|+++||||||..++...
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999763

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0082  Score=45.53  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|++++|||+|+.++...
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6999999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0074  Score=45.93  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=19.6

Q ss_pred             EEEEEcCCccCHHHHHHHHHHhc
Q 045245          135 VVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .|+|.|.+|+|||+|..++....
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            58899999999999999987643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.019  Score=48.81  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=27.8

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSN  165 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~D  165 (251)
                      .+.+.+..|.||+|+|||+|+..++...   +..++-.|
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid   89 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   89 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            3677899999999999999999987654   34444444

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.85  E-value=0.0037  Score=53.16  Aligned_cols=27  Identities=19%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +++..+++|+||+|||||.++|.....
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH
Confidence            346778999999999999999987654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.84  E-value=0.0033  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|.+++|||||.++|..+
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.76  E-value=0.0049  Score=54.61  Aligned_cols=29  Identities=24%  Similarity=0.142  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      |...+|.|-|+-||||||+++.|++.++.
T Consensus         2 p~~lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           2 PTLLRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC----
T ss_pred             CCceEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            34467999999999999999999988753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.74  E-value=0.025  Score=48.47  Aligned_cols=39  Identities=18%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHh---cCCceEecCC
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIH---FSGEAINSNK  166 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~---l~~~VIS~Ds  166 (251)
                      -..+.+.+..|.||+|+|||+||..++..   .+..++-.|.
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            35578899999999999999999888654   3555555554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.73  E-value=0.02  Score=48.82  Aligned_cols=37  Identities=16%  Similarity=0.342  Sum_probs=28.7

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCC
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNK  166 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds  166 (251)
                      .+.+++.-|.||+|||||+||..++...   +..++-.|.
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt   93 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA   93 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence            3778899999999999999998886543   455555554

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.72  E-value=0.0098  Score=49.89  Aligned_cols=23  Identities=13%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      +.+-+|+||+|||||++..+|.=
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45778999999999999998853

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.046  Score=48.43  Aligned_cols=25  Identities=28%  Similarity=0.238  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      +.+..|+|+|.||+|||||.++|.-
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4467799999999999999999964

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.72  E-value=0.0098  Score=45.66  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|+|.|.+|||||||..++...
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999999863

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.01  Score=44.79  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      -.|+|+|.+|+|||+|..++....
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999997653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.68  E-value=0.01  Score=45.23  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|.+|+|||||..++...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            36889999999999999998753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.0098  Score=44.95  Aligned_cols=23  Identities=17%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|.+|+|||+|..++...
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47889999999999999998764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.011  Score=44.74  Aligned_cols=24  Identities=17%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      -.|+|.|.+|||||+|..++....
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999997654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.63  E-value=0.0097  Score=48.14  Aligned_cols=18  Identities=22%  Similarity=0.493  Sum_probs=14.6

Q ss_pred             EEEEEcCCccCHHHHHHH
Q 045245          135 VVFVMGATATGKTKLSID  152 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~  152 (251)
                      .++|.||+||||||++..
T Consensus        16 ~~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEEECCCTTSCHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHH
Confidence            467889999999987543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.01  Score=46.24  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|++|||||||..++...
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhhC
Confidence            35889999999999999999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.0094  Score=48.75  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=22.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      ++.+|+|.-|||||||.++|.++..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~~   28 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQH   28 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcCC
Confidence            6899999999999999999988654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.59  E-value=0.011  Score=44.97  Aligned_cols=20  Identities=20%  Similarity=0.478  Sum_probs=18.7

Q ss_pred             eEEEEEcCCccCHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDL  153 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~L  153 (251)
                      ..|+|.|.+|||||||..++
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.58  E-value=0.01  Score=49.42  Aligned_cols=27  Identities=15%  Similarity=0.133  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .....|+|.|++||||+++|+.|.+.-
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            334568999999999999999997654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.011  Score=45.90  Aligned_cols=24  Identities=33%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..|+|.|.+|+|||+|..++.+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC
Confidence            478999999999999999997643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.011  Score=45.30  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=20.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.|++.|.+|+|||+|..++...
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999999754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.55  E-value=0.011  Score=45.71  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             EEEEEcCCccCHHHHHHHHHHh
Q 045245          135 VVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .|++.|.+|+|||+|..++.+.
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999999874

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.54  E-value=0.01  Score=45.75  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=16.1

Q ss_pred             EEEEcCCccCHHHHHHHHHH
Q 045245          136 VFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       136 IvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+|.+|||+|||.++..++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            56779999999987776664

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0057  Score=46.83  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=18.7

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.|+|.|++|+|||+|..++...
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36888999999999999988653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.36  E-value=0.011  Score=48.60  Aligned_cols=18  Identities=22%  Similarity=0.510  Sum_probs=14.8

Q ss_pred             EEEEEcCCccCHHHHHHH
Q 045245          135 VVFVMGATATGKTKLSID  152 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~  152 (251)
                      .++|.|++||||||++..
T Consensus        26 ~~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             CEEEEECTTSCHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHH
Confidence            377889999999987654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.28  E-value=0.014  Score=44.44  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=19.7

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.|++.|.+|+|||+|..++...
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35778899999999999999863

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.015  Score=44.48  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..|+|.|.+|+|||+|..++...
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999998753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.26  E-value=0.011  Score=48.31  Aligned_cols=25  Identities=20%  Similarity=0.441  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+-+|+||+|||||++..+|.=-+
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4578999999999999988885544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.22  E-value=0.0075  Score=46.00  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=9.1

Q ss_pred             EEEEEcCCccCHHHHHHHHHH
Q 045245          135 VVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       135 iIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .|+|.|.+|||||||..+|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.014  Score=51.54  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=18.6

Q ss_pred             CeEEEEEcCCccCHHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLA  154 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LA  154 (251)
                      .++.+|.||+|+||||++..+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            5799999999999999876543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.13  E-value=0.013  Score=48.64  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .....|+|.|.||+|||||...|..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            45578999999999999999999754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.11  E-value=0.011  Score=52.05  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=23.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSG  159 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~  159 (251)
                      ..|+|.|+-||||||+++.|++.++.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46999999999999999999998863

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.89  E-value=0.026  Score=44.86  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=22.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGE  160 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~  160 (251)
                      ...+|.+|||+|||.+|..++++++..
T Consensus        86 ~~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          86 KRGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             CCcEEEeCCCCCceehHHhHHHHhcCc
Confidence            345678899999999999999988743

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.02  Score=49.16  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=23.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh---cCCceEecCC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH---FSGEAINSNK  166 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~---l~~~VIS~Ds  166 (251)
                      +-++|.|+||||||+++..+..+   .+..++-.|.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            45899999999999998776544   3444444454

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.78  E-value=0.13  Score=39.91  Aligned_cols=27  Identities=19%  Similarity=0.179  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+.+=+|.||--|||||-..+.++++
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHh
Confidence            456788999999999999998888765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.77  E-value=0.017  Score=46.36  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=20.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..|+|.|.+|||||||.+++....
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~   30 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILH   30 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999986543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.023  Score=47.28  Aligned_cols=26  Identities=15%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      +..+.++|+||.++||||+.+.++-.
T Consensus        39 ~~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          39 PQRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEeccCchhhHHHHHHHHHH
Confidence            44578999999999999999998763

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.65  E-value=0.028  Score=47.66  Aligned_cols=62  Identities=16%  Similarity=0.122  Sum_probs=43.0

Q ss_pred             hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCC
Q 045245          126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVD  197 (251)
Q Consensus       126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d  197 (251)
                      +.+..++.+.+++.||+++|||+++..|++-++. ..+...         ...........+....+.|..+
T Consensus        97 L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~-~~~~~~---------~~~~f~l~~l~~k~~~~~~e~~  158 (267)
T d1u0ja_          97 ATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNW---------TNENFPFNDCVDKMVIWWEEGK  158 (267)
T ss_dssp             HTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCT---------TCSSCTTGGGSSCSEEEECSCC
T ss_pred             HcCCCCccEEEEEEcCCCCCHHHHHHHHHHHhcc-hhhccc---------cCCCccccccCCCEEEEEeCCC
Confidence            3456688899999999999999999999999854 333221         1223344556666777766543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.62  E-value=0.025  Score=42.39  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -.|++.|..|||||+|..++...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            47899999999999999999654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.33  E-value=0.027  Score=45.64  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=26.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK  166 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds  166 (251)
                      ++.|+|+|-=|+||||+|..||..+   |  .-+|-+|.
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3688899999999999999888765   2  23666663

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.028  Score=45.27  Aligned_cols=27  Identities=11%  Similarity=0.202  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..+.-+++.||+|+|||++|..|++..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999865

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.09  E-value=0.027  Score=43.39  Aligned_cols=23  Identities=30%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .-|+|.|.+.+|||||..+|.+.
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHh
Confidence            45999999999999999999753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.028  Score=43.64  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=21.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..|++.|.+|+|||+|..++...-
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            679999999999999999987643

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.09  E-value=0.018  Score=46.53  Aligned_cols=18  Identities=33%  Similarity=0.414  Sum_probs=15.7

Q ss_pred             CCCeEEEEEcCCccCHHH
Q 045245          131 NKKKVVFVMGATATGKTK  148 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTT  148 (251)
                      .+++.++|.+|||||||+
T Consensus         7 ~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             hcCCcEEEEECCCCCHHH
Confidence            466789999999999995

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.97  E-value=0.036  Score=44.70  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +++|+|+|.+.+|||||..+|....
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhc
Confidence            4679999999999999999997653

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.94  E-value=0.033  Score=45.81  Aligned_cols=33  Identities=12%  Similarity=0.245  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc---CC--ceEecC
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF---SG--EAINSN  165 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~~--~VIS~D  165 (251)
                      +++|+|+|-=|+||||+|..||..+   |-  -+|=+|
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            4678889999999999888877654   32  355555

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.81  E-value=0.04  Score=42.75  Aligned_cols=25  Identities=24%  Similarity=0.591  Sum_probs=20.4

Q ss_pred             CeEEEEE-cCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVM-GATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIs-GpTGSGKTTLA~~LAk~l  157 (251)
                      .++|+|. +-.|+||||+|..||..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            4677776 678999999999998755

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.036  Score=47.22  Aligned_cols=65  Identities=25%  Similarity=0.137  Sum_probs=38.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA  200 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e  200 (251)
                      .+|.|+||.+||||+|...|.....+.-+....-+..+|+-+.. .|-+.+ .+....++|.+.+..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~-~~~~~~-~~~~~~~lDteG~~~   97 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWC-VPHPKK-PGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEE-EECSSS-TTCEEEEEEECCBCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEE-eeccCC-CCceEEEEecccccc
Confidence            57889999999999999999876543222222222333432211 122221 345667888777544

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.49  E-value=0.021  Score=44.71  Aligned_cols=18  Identities=39%  Similarity=0.386  Sum_probs=15.0

Q ss_pred             eEEEEEcCCccCHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSI  151 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~  151 (251)
                      +-++|.+|||||||+.|.
T Consensus        41 ~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             SCEEEECSSHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHH
Confidence            457899999999998763

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.18  E-value=0.021  Score=45.78  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=17.7

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      ++-++|.+|||+|||..+...+.
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHH
Confidence            45678889999999987665543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.10  E-value=0.051  Score=42.27  Aligned_cols=27  Identities=19%  Similarity=0.265  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .++-.|++.|-+||||+|||++|..++
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998776

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.97  E-value=0.051  Score=44.97  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ++++|+||.++||||+.+.++-.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            48999999999999999988753

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.62  E-value=0.064  Score=41.63  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=22.9

Q ss_pred             eEEEE-EcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245          134 KVVFV-MGATATGKTKLSIDLAIHF---S--GEAINSNK  166 (251)
Q Consensus       134 kiIvI-sGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds  166 (251)
                      |+|.| +|--|+||||+|..||..+   +  ..+|-+|.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45555 4789999999999888755   2  23555553

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=89.44  E-value=0.12  Score=44.87  Aligned_cols=29  Identities=17%  Similarity=0.269  Sum_probs=25.1

Q ss_pred             cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          129 NFNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ..-++-.+.|.|++|+|||+|+..+++..
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            45677899999999999999999998744

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=88.50  E-value=2.1  Score=32.37  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          133 KKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.+=+|.||-.|||||-..+.++++
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            3567899999999999776666654

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.12  Score=40.11  Aligned_cols=24  Identities=21%  Similarity=0.122  Sum_probs=17.4

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhc
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +-++++.|||||||..+.-.....
T Consensus        41 ~~vlv~apTGsGKT~~~~~~~~~~   64 (206)
T d1oywa2          41 RDCLVVMPTGGGKSLCYQIPALLL   64 (206)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEcCCCCCCcchhhhhhhhc
Confidence            346788899999998875554443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.72  E-value=0.18  Score=40.21  Aligned_cols=23  Identities=30%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      .-|+|.|-.++|||||+.+|...
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHH
Confidence            45899999999999999999644

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.87  E-value=0.19  Score=42.84  Aligned_cols=25  Identities=12%  Similarity=0.091  Sum_probs=21.8

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +-|+|+|..|+|||||+.+|...-+
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            4699999999999999999976554

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=86.22  E-value=0.27  Score=38.46  Aligned_cols=25  Identities=24%  Similarity=0.202  Sum_probs=21.0

Q ss_pred             CCC-eEEEEEcCCccCHHHHHHHHHH
Q 045245          131 NKK-KVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       131 ~k~-kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+| .-|+|.|...+|||||+.+|..
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            344 3599999999999999999974

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=86.02  E-value=0.24  Score=41.31  Aligned_cols=29  Identities=24%  Similarity=0.211  Sum_probs=23.7

Q ss_pred             ccCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          128 MNFNKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ...+++...+|.|.||||||-++...+..
T Consensus        71 ~~~~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          71 MCQPLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             HHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             HhccCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            34566678899999999999999887764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=85.59  E-value=0.29  Score=41.34  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=21.2

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245          134 KVVFVMGATATGKTKLSIDLAIHFS  158 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~l~  158 (251)
                      +-|+|.|..|+|||||+.+|.-.-+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            4589999999999999999975544

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.44  E-value=0.29  Score=42.04  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      -++-.+.|.|++|+|||+|+..++..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999876

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.40  E-value=0.25  Score=40.36  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      +.|+|+|...+|||||..+|..
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHhC
Confidence            4678889999999999999974

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=85.34  E-value=0.3  Score=40.36  Aligned_cols=28  Identities=21%  Similarity=0.235  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          130 FNKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.+..++|+|-|.||||||...|..+.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccc
Confidence            3556779999999999999999998754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.67  E-value=0.23  Score=43.75  Aligned_cols=22  Identities=41%  Similarity=0.596  Sum_probs=18.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSID  152 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~  152 (251)
                      .+..+-++.|.||+|||||+..
T Consensus        12 ~~~~valffGLSGTGKTTLs~~   33 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHTCB
T ss_pred             CCCCEEEEEccCCCCccccccC
Confidence            4457889999999999998754

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.10  E-value=0.31  Score=42.84  Aligned_cols=22  Identities=45%  Similarity=0.628  Sum_probs=18.2

Q ss_pred             CCCeEEEEEcCCccCHHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSID  152 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~  152 (251)
                      .+..+-++.|.||+|||||+..
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~d   33 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLSTD   33 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHCC
T ss_pred             CCCCEEEEEccCCCCcccceeC
Confidence            4457889999999999998843

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.50  E-value=0.47  Score=38.95  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCccCHHHHHHHHHH
Q 045245          133 KKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       133 ~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .+.|+|+|...+|||||..+|..
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhC
Confidence            35688999999999999999974

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=82.39  E-value=0.44  Score=45.10  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHH
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      +.--|+|+|.||||||+-++.+.+
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999887754

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.79  E-value=0.37  Score=42.53  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=17.9

Q ss_pred             CCCeEEEEEcCCccCHHHHHH
Q 045245          131 NKKKVVFVMGATATGKTKLSI  151 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~  151 (251)
                      .++.+-++.|.||+|||||+.
T Consensus        12 ~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            455778899999999999984

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=81.52  E-value=0.51  Score=39.25  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=20.6

Q ss_pred             eEEEEEcCCccCHHHHHHHHHHh
Q 045245          134 KVVFVMGATATGKTKLSIDLAIH  156 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk~  156 (251)
                      ..+.|+|-|.||||||-.+|...
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            56999999999999999999753

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.42  E-value=0.5  Score=45.09  Aligned_cols=27  Identities=15%  Similarity=0.346  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          131 NKKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      .+.--|+|+|.||||||.-++.+.+-+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            345699999999999999998886543

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.11  E-value=0.52  Score=44.72  Aligned_cols=26  Identities=15%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.--|+|+|.||||||+-++.+.+-+
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45689999999999999988876654

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.76  E-value=0.24  Score=38.46  Aligned_cols=15  Identities=33%  Similarity=0.361  Sum_probs=12.9

Q ss_pred             eEEEEEcCCccCHHH
Q 045245          134 KVVFVMGATATGKTK  148 (251)
Q Consensus       134 kiIvIsGpTGSGKTT  148 (251)
                      +=+++..|||||||.
T Consensus        39 ~dvii~a~TGSGKTl   53 (209)
T d1q0ua_          39 ESMVGQSQTGTGKTH   53 (209)
T ss_dssp             CCEEEECCSSHHHHH
T ss_pred             CCeEeecccccccce
Confidence            458888999999996

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=80.71  E-value=0.43  Score=45.98  Aligned_cols=26  Identities=15%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      +.--|+|+|.||||||.-++.+.+-+
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45789999999999998877766543

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.55  E-value=0.46  Score=37.17  Aligned_cols=16  Identities=25%  Similarity=0.368  Sum_probs=13.1

Q ss_pred             eEEEEEcCCccCHHHH
Q 045245          134 KVVFVMGATATGKTKL  149 (251)
Q Consensus       134 kiIvIsGpTGSGKTTL  149 (251)
                      +=+++.+|||||||..
T Consensus        39 ~dvi~~a~tGsGKTla   54 (206)
T d1s2ma1          39 RDILARAKNGTGKTAA   54 (206)
T ss_dssp             CCEEEECCTTSCHHHH
T ss_pred             CCEEEecCCcchhhhh
Confidence            3488999999999943

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=80.19  E-value=0.61  Score=37.06  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             eEEEEEcCCccCHHHHHHHHHH
Q 045245          134 KVVFVMGATATGKTKLSIDLAI  155 (251)
Q Consensus       134 kiIvIsGpTGSGKTTLA~~LAk  155 (251)
                      .-|+|+|-..+|||||+.+|..
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHH
Confidence            3489999999999999999975

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=80.05  E-value=0.57  Score=44.47  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245          132 KKKVVFVMGATATGKTKLSIDLAIHF  157 (251)
Q Consensus       132 k~kiIvIsGpTGSGKTTLA~~LAk~l  157 (251)
                      ++--|+|+|.||||||.-++.+.+-+
T Consensus        93 ~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          93 RNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45689999999999999988886643