Citrus Sinensis ID: 045249

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLGNDHPDAFGNINVNVNEDISVSGGIDGGVDFDFGFDEHFN
Secondary Structure (PSIPRED)
ccccEEEEEccccccccccccccccccccHHHHHHHHHcccEEEEEEcccccEEEcccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccHHHHHHHHHHHccccHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
grqkiqikkledknsLQVTFSKRRSGLFSKAMELCVLCGAEVgiivfspngkiflaghpDFDKILNRYldqnhssldevntipcvqqHNKEYEDAMQELEKEKKRGKMIEEEKKKNksngrfwwqegniidDMGIEELEEYLKAMKKLKGKVEMRVNEIMMngylapnmnlgndhpdafgninvnvnedisvsggidggvdfdfgfdehfn
Flexible Loop (DISEMBL)
grqkiqikkledknslqvtfskrrsglfSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEkkrgkmieeekkknksngrfwwqegnIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLGNDHPDAFGNINVNVNEDISVSGGIDGGVDFDFGFDEHFN
Low Complexity Region (SEG)
GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLGNDHPDAFGNINVNVNEdisvsggidggvdfdfgfdEHFN
Disordered region (IsUnstruct)
************************SGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHSSLDEVNTIPCV***********************************RFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLGNDHPDAFGNINVNVNEDISVSGGIDGGVDFDFGF*****
Disordered Region (DISOPRED)
GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD**************************************************RFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEI****************************************************
Disordered Region (DISEMBL)
GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLGNDHPDAFGNINVNVNEDISVSGGIDGGVDFDFGFDEHFN
Disordered Region (DISPRO)
****IQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHSSLDE****PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLGNDHPDAFGNINVNVNEDISVS***DGGVDFDFGFDEHFN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHSSLDEVNTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSNGRFWWQEGNIIDDMGxxxxxxxxxxxxxxxxxxxxxVNEIMMNGYLAPNMNLGNDHPDAFGNINVNVNEDISVSGGIDGGVDFDFGFDEHFN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q9FKK2	299	Agamous-like MADS-box pro	yes	no	0.829	0.585	0.365	4e-27
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.710	0.568	0.407	4e-27
Q38847	268	Agamous-like MADS-box pro	no	no	0.355	0.279	0.56	5e-16
O64645	214	MADS-box protein SOC1 OS=	no	no	0.473	0.467	0.428	2e-15
Q39295	264	Agamous-like MADS-box pro	N/A	no	0.322	0.257	0.588	5e-15
Q39371	256	Floral homeotic protein A	N/A	no	0.322	0.265	0.550	6e-15
Q9ATE5	268	MADS-box protein FBP24 OS	N/A	no	0.360	0.283	0.5	7e-15
Q6Q9I2	267	MADS-box transcription fa	yes	no	0.322	0.254	0.579	8e-15
P0C5B2	233	MADS-box transcription fa	no	no	0.317	0.287	0.514	1e-14
Q40170	227	Agamous-like MADS-box pro	N/A	no	0.322	0.299	0.565	1e-14

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 112/189 (59%), Gaps = 14/189 (7%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI++ K++++++LQVTFSKRRSGLF KA ELC LCGAEV I+VFSP  K+F  GHP+
Sbjct: 7   GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPN 66

Query: 61  FDKILNRYLD--------QNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEE 112
            D +++R+++         N+  L E      VQ  N      + +LE EKK+   +++ 
Sbjct: 67  VDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKI 126

Query: 113 KKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLG 172
           ++K K+ G  WW++   ++++ + +LE +   ++ LK  V +  +         PN  +G
Sbjct: 127 REKTKALGN-WWEDP--VEELALSQLEGFKGNLENLKKVVTVEASRFFQAN--VPNFYVG 181

Query: 173 NDHPD-AFG 180
           +   + AFG
Sbjct: 182 SSSNNAAFG 190

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 102/157 (64%), Gaps = 7/157 (4%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI + K++ ++  QVTFSKRR+GLF KA ELC LCGAE+GIIVFSP  K F  GHP 
Sbjct: 63  GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPS 122

Query: 61  FDKILNRYLDQNHSSLDEVNTI---PCVQ-QHNKEYEDAMQELEKEKKRGKMIEEEKKKN 116
            + +L+RY+ +N+ SL +   +   P    + N +    + E+E+EKK+G+ +EE +K++
Sbjct: 123 VESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKES 182

Query: 117 KSNGRF-WWQEGNIIDDMGIEELEEYLKAMKKLKGKV 152
                  WW++   +++M + +L+E   A+++L+  V
Sbjct: 183 VRRSMINWWEKP--VEEMNMVQLQEMKYALEELRKTV 217

Probable transcription factor. Controls central cell differentiation during female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR KI+IK++E+ NS QVTFSKRRSGL  KA EL VLC AEV +IVFS +GK+F      
Sbjct: 2  GRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTG 61

Query: 61 FDKILNRYLDQNHSS 75
            + L+RY +   SS
Sbjct: 62 MKQTLSRYGNHQSSS 76

Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro.

Arabidopsis thaliana (taxid: 3702)

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 12/112 (10%)

Query: 2   RQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDF 61
           R K Q+K++E+  S QVTFSKRR+GL  KA EL VLC AEV +I+FSP GK++     + 
Sbjct: 3   RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNM 62

Query: 62  DKILNRYLDQNHSSLDEVNTIPCVQ---QHNKEYEDA-----MQELEKEKKR 105
              ++RYL       D V+T P  +   QH K YE A     +++LE  K++
Sbjct: 63  QDTIDRYLRHTK---DRVSTKPVSEENMQHLK-YEAANMMKKIEQLEASKRK 110

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 48/68 (70%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR KI+IK++E+ NS QVTFSKRR+GL  KA EL VLC AEV +IVFS +GK+F      
Sbjct: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTS 61

Query: 61 FDKILNRY 68
            K L RY
Sbjct: 62 MKKTLLRY 69

Probable transcription factor.

Brassica napus (taxid: 3708)

>sp|Q39371|3AP1_BRAOL Floral homeotic protein APETALA 1 OS=Brassica oleracea GN=AP1 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIF-LAGHP 59
          GR ++Q+K++E+K + QVTFSKRR+GLF KA E+ VLC AEV ++VFS  GK+F  +  P
Sbjct: 2  GRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDP 61

Query: 60 DFDKILNRY 68
            +KIL RY
Sbjct: 62 CMEKILERY 70

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea (taxid: 3712)

>sp|Q9ATE5|FBP24_PETHY MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 2/78 (2%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIF-LAGHP 59
          GR KI++K++E+K S QVTFSKRR+GL  K  EL VLC A++G+I+FS  GK+F     P
Sbjct: 5  GRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQP 64

Query: 60 -DFDKILNRYLDQNHSSL 76
              +I++RYL    +SL
Sbjct: 65 HSMSQIISRYLQTTGASL 82

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|Q6Q9I2|MAD15_ORYSJ MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIF-LAGHP 59
          GR K+Q+K++E+K + QVTFSKRR+GL  KA E+ VLC AEV  IVFSP GK++  A   
Sbjct: 2  GRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDS 61

Query: 60 DFDKILNRY 68
            DKIL RY
Sbjct: 62 RMDKILERY 70

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 2  RQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIF-LAGHPD 60
          R + ++K++E+  S QVTFSKRR+GL  KA EL VLC AEV +IVFSP G+++  A  P 
Sbjct: 3  RGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPS 62

Query: 61 FDKILNRY 68
            K ++RY
Sbjct: 63 LQKTIDRY 70

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40170|AGL8_SOLLC Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIF-LAGHP 59
          GR ++Q+K++E+K + QVTFSKRRSGL  KA E+ VLC AEVG+IVFS  GK+F  A   
Sbjct: 2  GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDS 61

Query: 60 DFDKILNRY 68
            ++IL RY
Sbjct: 62 CMERILERY 70

Probable transcription factor.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
255583383	217	mads box protein, putative [Ricinus comm	0.886	0.861	0.495	3e-43
359483542	223	PREDICTED: agamous-like MADS-box protein	0.905	0.856	0.379	7e-31
449460287	225	PREDICTED: agamous-like MADS-box protein	0.744	0.697	0.496	1e-30
449511623	225	PREDICTED: agamous-like MADS-box protein	0.744	0.697	0.496	2e-30
224132610	173	predicted protein [Populus trichocarpa]	0.748	0.913	0.556	5e-30
225463450	222	PREDICTED: agamous-like MADS-box protein	0.900	0.855	0.366	8e-29
225429161	214	PREDICTED: agamous-like MADS-box protein	0.744	0.733	0.409	1e-28
224117988	203	predicted protein [Populus trichocarpa]	0.881	0.916	0.402	2e-28
147838008	223	hypothetical protein VITISV_025001 [Viti	0.905	0.856	0.366	2e-28
225429169	212	PREDICTED: agamous-like MADS-box protein	0.857	0.853	0.39	2e-28

>gi|255583383|ref|XP_002532452.1| mads box protein, putative [Ricinus communis] gi|223527842|gb|EEF29938.1| mads box protein, putative [Ricinus communis]

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/214 (49%), Positives = 138/214 (64%), Gaps = 27/214 (12%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI+IK +E K++LQVTFSKRR+GLF KA EL +LCGA+V ++ FSP  K+F  GHP+
Sbjct: 13  GRQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVFAFGHPN 72

Query: 61  FDKILNRYLDQNHSSL--DEVNTI----PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKK 114
            + +L+RYL++ +     D   T+    P VQQ NKEYEDAM+ELE+EKK   M+EE KK
Sbjct: 73  VETVLDRYLNEGNPDAKEDTAQTVTSDSPRVQQWNKEYEDAMKELEEEKKCLAMVEEWKK 132

Query: 115 KNKS--NGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLG 172
             +S  NG FWW E   +DDMG+EELEEY KA+K+LK  V +R NE+MM         +G
Sbjct: 133 VRESNVNGGFWWDEP--VDDMGVEELEEYAKALKELKRNVGIRANELMM---------IG 181

Query: 173 NDHPDAFGNINVNVNEDISVSGGIDGGVDFDFGF 206
           N+H     N N N+   +  S       D  FGF
Sbjct: 182 NNHHIVNNNQN-NLGYGVGTS-------DLGFGF 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483542|ref|XP_002264830.2| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 33/224 (14%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI+I+K+E KNSL VTFSKRR+GLF KA ELCVLCG E  +IVFSP G+ F+ GHP 
Sbjct: 13  GRQKIEIRKIEKKNSLLVTFSKRRTGLFKKAGELCVLCGVEAAVIVFSPAGRAFVFGHPT 72

Query: 61  FDKILNRYLDQNHSSLDEVNTIPCVQ----QHNKEYEDAMQELEKEKKRGKMIEEEKKKN 116
            D +++R+L ++  ++     +P  Q    Q  ++Y + +   E +K+ G          
Sbjct: 73  ADAVIDRFLGRDTGTISRA-VVPAEQVVHGQVQRQYLEPVGRAEAKKEEGG--------- 122

Query: 117 KSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEI--MM-------NGYLAP 167
                FWW     I++MG+ ELE++  +++KL+ KV  RV E+  MM        G  + 
Sbjct: 123 -----FWWDAP--IENMGLNELEQFKGSLEKLRKKVADRVEEMTSMMVMESESGAGPSST 175

Query: 168 NMNLGNDHPDAFGNINVNVNEDISV---SGGIDGGVDFDFGFDE 208
            M      P A+ +  V    D++    S  +  G DF FGFDE
Sbjct: 176 TMVEYAVPPQAYNSSAVLHARDLAAHSHSQAVPQGFDFGFGFDE 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460287|ref|XP_004147877.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI+IKKLE K+S QVTFSKRR+GLF KA EL VLCGAEV IIVFSPN K+F  GHPD
Sbjct: 14  GRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFCFGHPD 73

Query: 61  FDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNG 120
            D +L+RYL  N S      +   V + N+++ D   E E EKKR   +    + ++ NG
Sbjct: 74  VDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAEDSRKNG 133

Query: 121 RFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEI 159
            FWWQE   ++ + +EEL+++  A+  L+ KV  RV ++
Sbjct: 134 GFWWQEA--VEGLRLEELKDFRSALMDLRAKVAERVEKL 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511623|ref|XP_004164009.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI+IKKLE K+S QVTFSKRR+GLF KA EL VLCGAEV IIVFSPN K+F  GHPD
Sbjct: 14  GRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFCFGHPD 73

Query: 61  FDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNG 120
            D +L+RYL  N S      +   V + N+++ D   E E EKKR   +    + ++ NG
Sbjct: 74  VDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKKRAAELIRAAEDSRKNG 133

Query: 121 RFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEI 159
            FWWQE   ++ + +EEL+++  A+  L+ KV  RV ++
Sbjct: 134 GFWWQEA--VEGLRLEELKDFRSALMDLRAKVAERVEKL 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132610|ref|XP_002327838.1| predicted protein [Populus trichocarpa] gi|224147187|ref|XP_002336425.1| predicted protein [Populus trichocarpa] gi|222834974|gb|EEE73423.1| predicted protein [Populus trichocarpa] gi|222837247|gb|EEE75626.1| predicted protein [Populus trichocarpa]

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 121/167 (72%), Gaps = 9/167 (5%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI+IKK+E+K++LQVTFSKRR GL  KA EL +LCGA+V I+ FSP  K+F  GHPD
Sbjct: 7   GRQKIEIKKIEEKSNLQVTFSKRRGGLVKKASELSLLCGAQVAILAFSPGKKVFAFGHPD 66

Query: 61  FDKILNRYLDQNHSSLDEVNTI----PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKK-- 114
            D +L+RYL  + S+  E+  +    P VQQ NKEYE+A++ELE+EKK+  M E+  K  
Sbjct: 67  VDMVLDRYLS-DSSTARELGAVNNNDPQVQQWNKEYEEALKELEEEKKQVAMAEQWNKVC 125

Query: 115 KNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161
           +N  N RFWW E   IDDMG+EELEEY++AM++LK  V  R NE+ M
Sbjct: 126 ENDVNARFWWDEP--IDDMGLEELEEYVRAMEELKKNVAARANELTM 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463450|ref|XP_002272654.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 122/224 (54%), Gaps = 34/224 (15%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GR+KI+I+K+E K+SL+VTFSKRR+GLF KA ELCVLCGAE  +IVFSP G+ F+ GHP 
Sbjct: 13  GRKKIEIRKIEKKSSLEVTFSKRRAGLFKKAGELCVLCGAEAAVIVFSPGGRAFVFGHPT 72

Query: 61  FDKILNRYLDQNHSSLDEVNTIPCVQ----QHNKEYEDAMQELEKEKKRGKMIEEEKKKN 116
            D +++ +L ++ +       +P  Q    Q  ++Y +A+   E        ++EE    
Sbjct: 73  ADAVIDHFLGRD-TDTSSRGVVPAEQVVHGQVQRQYLEAVGRAE--------VKEE---- 119

Query: 117 KSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM---------NGYLAP 167
              G FWW     I++MG+ ELE++  +++KL+ KV  RV EI +          G  + 
Sbjct: 120 ---GGFWWD--APIENMGLNELEQFKGSLEKLREKVADRVAEITLMMVMDSESGAGPSST 174

Query: 168 NMNLGNDHPDAFGNINVNVNEDISV---SGGIDGGVDFDFGFDE 208
            M      P  + +  V    D++    S  +  G  F FGFDE
Sbjct: 175 TMVEYAAPPQEYNSSAVLHARDLAADSHSQAVPQGFHFGFGFDE 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429161|ref|XP_002270964.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|147772544|emb|CAN63001.1| hypothetical protein VITISV_024203 [Vitis vinifera]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI+I K+  KN LQVTFSKRRSGLF KA ELC LCGA V IIVFSP GK+F  GHPD
Sbjct: 8   GRQKIEISKIPKKNHLQVTFSKRRSGLFKKASELCTLCGANVAIIVFSPAGKVFSFGHPD 67

Query: 61  FDKILNRYLDQNHSSLDEVNTIPCVQQH--------NKEYEDAMQELEKEKKRGKMIEEE 112
            + I++R+   N   + E N +  ++ H        N +    + +LE EKKRG+++ + 
Sbjct: 68  VESIVDRFFTCN--PIPEPNGLHLIEAHRNASVRELNLQLTQVLNQLEAEKKRGEILSQM 125

Query: 113 KKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNG 163
           ++ +++  + WW+    I+++ + ELE+   +M++LK  V  + ++++M  
Sbjct: 126 RRASQT--QCWWEAP--INELSMPELEQLKVSMEELKKVVLSQGDKLLMEA 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117988|ref|XP_002331530.1| predicted protein [Populus trichocarpa] gi|222873754|gb|EEF10885.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 117/194 (60%), Gaps = 8/194 (4%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI+IKK+E+K+SL+VTF+KRR GLF+KA ELC+L GAE  +I FSP  K F  G P 
Sbjct: 11  GRQKIEIKKIENKSSLEVTFTKRRKGLFNKASELCILTGAEAAVIAFSPGKKAFAFGFPS 70

Query: 61  FDKILNRYLDQNHSSLDEVNTIP----CVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKN 116
            D +++RY+ +N      VNT       VQ+  K+Y +A+ + E+EKKR + ++E     
Sbjct: 71  VDTVIDRYISENTEEGRSVNTSASHHRVVQESRKQYAEALAKKEEEKKRVETMKEGGTVG 130

Query: 117 KSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLGNDHP 176
               RFWW     I+DMG+EELE Y+ +M++LK  +E+ +        L P+  +    P
Sbjct: 131 FGRDRFWWDLS--IEDMGLEELERYVASMEELKKNLELGLMSWRRQATLHPDSWIW--IP 186

Query: 177 DAFGNINVNVNEDI 190
            +   + +++ E I
Sbjct: 187 ASTQRVLIDIYESI 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838008|emb|CAN73790.1| hypothetical protein VITISV_025001 [Vitis vinifera]

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 33/224 (14%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQKI+I+K+E KNSL VTFSKRR+GLF KA ELCVLCG E  +IVFSP G+ F+ GHP 
Sbjct: 13  GRQKIEIRKIEKKNSLLVTFSKRRTGLFKKAGELCVLCGVEAAVIVFSPXGRAFVFGHPT 72

Query: 61  FDKILNRYLDQNHSSLDEVNTIPCVQ----QHNKEYEDAMQELEKEKKRGKMIEEEKKKN 116
            D +++R+L ++  ++     +P  Q    Q  ++Y + +   E +K+ G          
Sbjct: 73  ADAVIDRFLGRDTGTISRA-VVPAEQVVHGQVQRQYLEPVGRAEXKKEEGG--------- 122

Query: 117 KSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMN---------GYLAP 167
                FWW     I++MG+ ELE++  +++KL+ KV  RV E+            G  + 
Sbjct: 123 -----FWWDAP--IENMGLNELEQFKGSLEKLRKKVADRVEEMTXMMVMESESGAGPSST 175

Query: 168 NMNLGNDHPDAFGNINVNVNEDISV---SGGIDGGVDFDFGFDE 208
            M      P  + +  V    D++    S  +  G DF FGFDE
Sbjct: 176 TMVEYAXPPQXYNSSAVLHARDLAAHSHSQAVPQGFDFGFGFDE 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429169|ref|XP_002271290.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 117/200 (58%), Gaps = 19/200 (9%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           GRQK+++ K+  +++LQVTFSKRRSGLF KA ELC LCGAE+ IIVFSP  K++  GHP 
Sbjct: 9   GRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKMYSFGHPG 68

Query: 61  FDKILNRYLDQN---HS---SLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKK 114
            + I++R+L  N   HS    L E +    V+  N +    + +LE EKKRG+ + + KK
Sbjct: 69  VESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRGEALTQMKK 128

Query: 115 KNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNG------YLAPN 168
              S  ++WW     I+++  E+LE    +++ LK  VEM  ++ MM        +L+ +
Sbjct: 129 --ASQAQYWW--AAPIEELSFEQLELLKVSLENLKRNVEMHADKHMMEASNPLTFFLSSS 184

Query: 169 MNLG---NDHPDAFGNINVN 185
           +  G   + H  AF  +N N
Sbjct: 185 VGAGVPYDAHIAAFDPLNFN 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.829	0.585	0.365	5.6e-29
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.710	0.568	0.407	1.3e-27
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.862	0.805	0.341	5.7e-27
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.862	0.736	0.348	2.5e-26
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.857	0.729	0.343	2.9e-25
TAIR|locus:2040819	172	AGL29 "AGAMOUS-like 29" [Arabi	0.758	0.930	0.382	5.9e-25
TAIR|locus:2103415	178	AGL91 "AGAMOUS-like 91" [Arabi	0.796	0.943	0.369	2.4e-21
TAIR|locus:2195798	217	AT1G17310 [Arabidopsis thalian	0.355	0.345	0.480	6.4e-19
TAIR|locus:2193922	224	AT1G72350 [Arabidopsis thalian	0.317	0.299	0.536	7e-18
UNIPROTKB|Q9ZS25	210	gsqua1 "MADS-box protein, GSQU	0.426	0.428	0.458	1.1e-17

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 69/189 (36%), Positives = 114/189 (60%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             GRQKI++ K++++++LQVTFSKRRSGLF KA ELC LCGAEV I+VFSP  K+F  GHP+
Sbjct:     7 GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPN 66

Query:    61 FDKILNRYLDQN------HSSLD--EVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEE 112
              D +++R+++ N      H+++   E      VQ  N      + +LE EKK+   +++ 
Sbjct:    67 VDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKI 126

Query:   113 KKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNLG 172
             ++K K+ G  WW++   ++++ + +LE +   ++ LK  V +  +         PN  +G
Sbjct:   127 REKTKALGN-WWEDP--VEELALSQLEGFKGNLENLKKVVTVEASRFFQAN--VPNFYVG 181

Query:   173 NDHPDA-FG 180
             +   +A FG
Sbjct:   182 SSSNNAAFG 190

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 64/157 (40%), Positives = 102/157 (64%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             GRQKI + K++ ++  QVTFSKRR+GLF KA ELC LCGAE+GIIVFSP  K F  GHP 
Sbjct:    63 GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPS 122

Query:    61 FDKILNRYLDQNHSSLDEVNTI---PCVQ-QHNKEYEDAMQELEKEKKRGKMIEEEKKKN 116
              + +L+RY+ +N+ SL +   +   P    + N +    + E+E+EKK+G+ +EE +K++
Sbjct:   123 VESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKES 182

Query:   117 KSNGRF-WWQEGNIIDDMGIEELEEYLKAMKKLKGKV 152
                    WW++   +++M + +L+E   A+++L+  V
Sbjct:   183 VRRSMINWWEKP--VEEMNMVQLQEMKYALEELRKTV 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 66/193 (34%), Positives = 114/193 (59%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             GR+K++I K+  +++LQVTFSKR++GLF KA E C LC A++ +IVFSP GK+F  GHP+
Sbjct:     7 GRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHPN 66

Query:    61 FDKILNRY----LDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKN 116
              D +L+ +    +  N+++LDE  T   VQ  NK Y +   E+EKE+K  +   + +++N
Sbjct:    67 VDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQNEREN 126

Query:   117 KSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMR----VNEIMMNGYLAPNMNLG 172
             + N   WW +  +  ++ + +    ++ +K LK  V+ +    +++   N Y+  + N  
Sbjct:   127 E-NAEEWWSKSPL--ELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPNFYVGSSSNAA 183

Query:   173 NDHPDAFGNINVN 185
                  + GNI+ N
Sbjct:   184 APATVSGGNISTN 196

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 67/192 (34%), Positives = 115/192 (59%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             GR+KI++ K+ ++++LQVTFSKRRSGLF K  ELC LC AE+ IIVFSP+GK +  GHP+
Sbjct:     7 GRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPN 66

Query:    61 FDKILN----RYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKN 116
              +K+L+    R +  N+++  E  T   +Q  N+   + M E EKE++  + I + +++N
Sbjct:    67 VNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQNEREN 126

Query:   117 KSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIM---MNGYLAPNMNLGN 173
             K   + WW+  N   ++ + +       ++ LK +V+ +V ++    +N Y+  + N+  
Sbjct:   127 KDAEK-WWR--NSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLNFYVGSSSNVAA 183

Query:   174 DHPDAFGNINVN 185
                 + GNI+ N
Sbjct:   184 PAAVSGGNISTN 195

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 68/198 (34%), Positives = 112/198 (56%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             GRQKI++KK+E++++LQVTFSKRR GLF KA ELC L GAE+ +IVFSP GK+F  GHP 
Sbjct:     7 GRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPS 66

Query:    61 FDKILNRYLDQNHSS---------LDEVNTIPC--VQQHNKEYEDAMQELEKEKKRGKMI 109
               ++++R+ + NH+S         L  V T P   +Q  N    + +   EKEK++  ++
Sbjct:    67 VQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQKRMVL 126

Query:   110 EEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNM 169
             +  K+  +  G  W+++   + D+ + E  + + A++ +K K+   V E+     +  + 
Sbjct:   127 DLLKESREQVGN-WYEKD--VKDLDMNETNQLISALQDVKKKL---VREMSQYSQVNVSQ 180

Query:   170 NLGNDHPDAFGNINVNVN 187
             N         G  NV ++
Sbjct:   181 NYFGQSSGVIGGGNVGID 198

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2040819 AGL29 "AGAMOUS-like 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 65/170 (38%), Positives = 107/170 (62%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             GR+KI+++ ++D N+ QVTFSKRR+GLF KA EL  LC AE+GI+VFSP GK F  G P+
Sbjct:     2 GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query:    61 FDKILNRYL---DQNHSSLDEV--NTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKK 115
              D +  R++   D + S  +E   N  P +++ ++  +   QE+E EK+RG+   +EK +
Sbjct:    62 LDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEK-SQEKLE 120

Query:   116 NKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYL 165
             +  + RF  +E   I+ + ++EL EY   ++ + G++E +VN +  +  L
Sbjct:   121 SAGDERF--KES--IETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCL 166

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2103415 AGL91 "AGAMOUS-like 91" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 68/184 (36%), Positives = 99/184 (53%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             GR+KI+++K++D N+ QVTFSKRR GLF KA EL  LC AEVGI+VFSP  K +  G P+
Sbjct:     2 GRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKPN 61

Query:    61 FDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNG 120
             FD I  R+  +N    +E     C          A QE +K  KR   I EE +  K +G
Sbjct:    62 FDVIAERF--KNEFEEEEEGD-SCETSGYSRGNRARQE-KKICKRLNSITEEAEAEKKHG 117

Query:   121 R--FWWQEG-------NIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGYLAPNMNL 171
                  W E          I+++ +EEL+E+   +KK+   ++  ++ +  +  L   M L
Sbjct:   118 EDLHKWLESAEQDKFNKPIEELTLEELKEFEAKIKKISCGIQSNISHMQASSSL---MFL 174

Query:   172 GNDH 175
              ND+
Sbjct:   175 SNDN 178

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2195798 AT1G17310 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
 Identities = 37/77 (48%), Positives = 54/77 (70%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             GRQKI+IKK+E++   QVTFSKRR GLF K+ EL VL GA++ +I FS   +I+  GH  
Sbjct:    48 GRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRFGH-- 105

Query:    61 FDKILNRYLDQNHSSLD 77
              D ++++YL ++   L+
Sbjct:   106 VDALIDKYLRKSPVKLE 122

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2193922 AT1G72350 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
 Identities = 37/69 (53%), Positives = 51/69 (73%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             GRQKI+IK++  +   QVTFSKRRSGLF KA EL VLCGA++GII FS   +I+  G+  
Sbjct:    43 GRQKIEIKEIMLETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDRIYSFGN-- 100

Query:    61 FDKILNRYL 69
              + ++++YL
Sbjct:   101 VNSLIDKYL 109

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|Q9ZS25 gsqua1 "MADS-box protein, GSQUA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 193 (73.0 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 44/96 (45%), Positives = 62/96 (64%)

Query:     1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIF-LAGHP 59
             GR K+Q+K++E+K + QVTFSKRR GL  KA E+ VLC AEV +IVFS  GK+F  +   
Sbjct:     2 GRGKVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDS 61

Query:    60 DFDKILNRY-----LDQNHSSLDEVNTIPCVQQHNK 90
               + IL+RY     +D+ H ++D  + I   Q+ NK
Sbjct:    62 CMENILDRYEQYSNIDRQHVAVDTDSPIRWTQECNK 97

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.3897.5.1 annotation not avaliable (173 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	6e-36
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	3e-28
smart00432	59	smart00432, MADS, MADS domain	7e-28
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	3e-25
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	3e-16
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-08

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  120 bits (304), Expect = 6e-36
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR KI+IK++E+  + QVTFSKRR+GL  KA EL VLC AEV +I+FS +GK++    P 
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 61 FDKILNRYLDQNHSSLD 77
           +KI+ RY   + SSL 
Sbjct: 61 MEKIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  100 bits (252), Expect = 3e-28
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHP 59
          GR KI+IK++E+K S QVTFSKRR+GLF KA EL VLC AEV +IVFSP+GK++     
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 99.6 bits (249), Expect = 7e-28
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHP 59
          GR+KI+IK++E+K + QVTFSKRR+GLF KA EL VLC AEV +IVFSP GK++    P
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 93.9 bits (234), Expect = 3e-25
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KI+IK++E+K    VTFSKRR GLF KA EL  LCGAEV +IV+SP+GK+++     
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 69.3 bits (170), Expect = 3e-16
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 8  KKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIF 54
          K++E+K++ QVTFSKRR+G+F KA EL VLC AEV +I+FS  GK++
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLY 47

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 1   GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
             +KI I  + +K    VTFSKR+ G+  KA EL VL G EV ++V S NG +     P 
Sbjct: 82  TGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK 141

Query: 61  FDKILN 66
            + ++ 
Sbjct: 142 LESVVK 147

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.81
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.44
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.57
PF10491	214	Nrf1_DNA-bind: NLS-binding and DNA-binding and dim	93.9
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.55
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	85.73
KOG4252	246	consensus GTP-binding protein [Signal transduction	82.62

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=2.7e-34  Score=196.30  Aligned_cols=72  Identities=51%  Similarity=0.882  Sum_probs=70.5

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhhcC
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQN   72 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~~~   72 (211)
                      ||+||+|++|+|+++|++||+|||.||||||.|||+||||+||+|||||+|++|+|++|++++||+||+..+
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~   72 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS   72 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999998855

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=2.5e-33  Score=224.43  Aligned_cols=72  Identities=56%  Similarity=0.962  Sum_probs=69.9

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCc--hhhHHHHhhhcC
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD--FDKILNRYLDQN   72 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~ps--v~~Vl~ry~~~~   72 (211)
                      ||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+  |+.|++||....
T Consensus         2 ~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~   75 (195)
T KOG0014|consen    2 GRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLT   75 (195)
T ss_pred             CCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhh
Confidence            899999999999999999999999999999999999999999999999999999999987  999999998865

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=2e-31  Score=184.73  Aligned_cols=72  Identities=49%  Similarity=0.844  Sum_probs=69.3

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCc-hhhHHHHhhhcC
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD-FDKILNRYLDQN   72 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~ps-v~~Vl~ry~~~~   72 (211)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ ++.++++|...+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~   73 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS   73 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence            899999999999999999999999999999999999999999999999999999998776 999999998865

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=2.6e-31  Score=171.47  Aligned_cols=59  Identities=63%  Similarity=1.019  Sum_probs=58.2

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCC
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHP   59 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~p   59 (211)
                      ||+||+|++|+|+++|++||+|||.||||||+||||||||+||+|||||+|++++|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=1.9e-30  Score=167.54  Aligned_cols=59  Identities=63%  Similarity=0.950  Sum_probs=57.7

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCC
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHP   59 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~p   59 (211)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|++++|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=3.2e-28  Score=152.07  Aligned_cols=51  Identities=53%  Similarity=0.937  Sum_probs=46.6

Q ss_pred             EEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCC
Q 045249            8 KKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGH   58 (211)
Q Consensus         8 ~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~   58 (211)
                      ++|+|++.|++||+|||.||||||.||||||||+||+|||||+|++|+|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999975

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.81  E-value=4.3e-21  Score=157.37  Aligned_cols=72  Identities=35%  Similarity=0.598  Sum_probs=65.9

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCch---------hhHHHHhhhc
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDF---------DKILNRYLDQ   71 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv---------~~Vl~ry~~~   71 (211)
                      ||+||+|++|+|+..|.+||+|||.||||||+|||||+|.+|-|+|.|.+|-+|+|++|..         +++|...++.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999999999999999865         4566666664


Q ss_pred             C
Q 045249           72 N   72 (211)
Q Consensus        72 ~   72 (211)
                      +
T Consensus       143 p  143 (338)
T KOG0015|consen  143 P  143 (338)
T ss_pred             C
Confidence            4

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.44  E-value=5.8e-14  Score=120.52  Aligned_cols=67  Identities=37%  Similarity=0.569  Sum_probs=62.7

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHH
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNR   67 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~r   67 (211)
                      ||+||.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|.+++|+.|..+.|+.-
T Consensus        82 ~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~  148 (412)
T COG5068          82 TGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS  148 (412)
T ss_pred             ccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence            6999999999999999999999999999999999999999999999999999999999876665543

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.57  E-value=3.1e-07  Score=65.77  Aligned_cols=70  Identities=17%  Similarity=0.356  Sum_probs=56.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 045249           86 QQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGY  164 (211)
Q Consensus        86 ~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~~~  164 (211)
                      ..+...+..+..++.+++.+++.++...+.         ..|++|++|+++||..|+..|+..+..||.|+.+++++++
T Consensus         8 ~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~---------~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i   77 (100)
T PF01486_consen    8 DLWDSQHEELQQEIAKLRKENESLQKELRH---------LMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQI   77 (100)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            355566666777777777777777644433         1489999999999999999999999999999999998765

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates

Probab=93.90  E-value=0.17  Score=40.53  Aligned_cols=44  Identities=11%  Similarity=0.209  Sum_probs=36.9

Q ss_pred             HHHHHHHHhhhhccceEEEEeCCCCc---ccccCCCchhhHHHHhhh
Q 045249           27 LFSKAMELCVLCGAEVGIIVFSPNGK---IFLAGHPDFDKILNRYLD   70 (211)
Q Consensus        27 L~KKa~ELs~LC~veva~ivfsp~gk---~~~f~~psv~~Vl~ry~~   70 (211)
                      |-.=..|++|-+|-+|+|++.+|+..   ...||.-..+.|+..|+.
T Consensus        41 l~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~   87 (214)
T PF10491_consen   41 LRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP   87 (214)
T ss_pred             HHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence            44456799999999999999999853   446788889999999977

The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.55  E-value=8.5  Score=29.77  Aligned_cols=66  Identities=20%  Similarity=0.249  Sum_probs=49.5

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249           83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM  161 (211)
Q Consensus        83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~  161 (211)
                      .....+..++..|++++..++.....++.....             -...++.+||......|..-+..+..|+..|..
T Consensus        72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~-------------L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   72 EELAELDAEIKELREELAELKKEVKSLEAELAS-------------LSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556667777777777777776666533332             335678999999999999999999999999875

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=85.73  E-value=2.2  Score=27.33  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=27.6

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249          126 EGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNE  158 (211)
Q Consensus       126 ~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~  158 (211)
                      .|++|+.||++||.+-...|+.=+..++.-+..
T Consensus        14 ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~   46 (59)
T PF06698_consen   14 IGEDLSLLSVEELEERIALLEAEIARLEAAIAK   46 (59)
T ss_pred             cCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999888887665443

The function of this family is unknown.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=82.62  E-value=9.4  Score=30.41  Aligned_cols=28  Identities=29%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             hhccceEEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249           37 LCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD   70 (211)
Q Consensus        37 LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~   70 (211)
                      --||++||+|||.+++.      |.+.+++=|..
T Consensus        90 yrgaqa~vLVFSTTDr~------SFea~~~w~~k  117 (246)
T KOG4252|consen   90 YRGAQASVLVFSTTDRY------SFEATLEWYNK  117 (246)
T ss_pred             hccccceEEEEecccHH------HHHHHHHHHHH
Confidence            35899999999999853      34556666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		5e-14
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		7e-14
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		1e-13
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		3e-13
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		5e-13
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		6e-13
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		1e-09
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		5e-05
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		6e-05

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KIQI ++ D+ + QVTF+KR+ GL  KA EL VLC  E+ +I+F+ + K+F     D
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 61 FDKILNRYLDQN 72
           DK+L +Y + N
Sbjct: 61 MDKVLLKYTEYN 72

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KIQI ++ D+ + QVTF+KR+ GL  KA EL VLC  E+ +I+F+ + K+F     D
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 61 FDKILNRYLDQN 72
           DK+L +Y + N
Sbjct: 61 MDKVLLKYTEYN 72

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KIQI ++ D+ + QVTF+KR+ GL  KA EL VL  AE+ +I+F+ + K+F     D
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 61 FDKILNRYLDQN 72
           DK+L +Y + N
Sbjct: 61 MDKVLLKYTEYN 72

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%)
Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KIQI ++ D+ + QVTF+KR+ GL  KA EL VLC  E+ +I+F+ + K+F     D
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 61 FDKILNRY 68
           DK+L +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KIQI ++ D+ + QVTF+KR+ GL  KA EL VLC  E+ +I+F+   ++F     D
Sbjct: 2  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 61
Query: 61 FDKILNRYLDQNHSSLDEVNT 81
           D++L +Y + +       NT
Sbjct: 62 MDRVLLKYTEYSEPHESRTNT 82

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KIQI ++ D+ + QVTF+KR+ GL  KA EL VLC  E+ +I+F+   ++F     D
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 61 FDKILNRYLDQNHSSLDEVNT 81
           D++L +Y + +       NT
Sbjct: 61 MDRVLLKYTEYSEPHESRTNT 81

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 2  RQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDF 61
          R+KI+IK +E+K    VTFSKR+ G+  KA EL VL G +V ++V S  G ++    P F
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77
Query: 62 DKILNR 67
          + I+ +
Sbjct: 78 EPIVTQ 83

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIF 54
          GR KI+++ +++K     TFSKR++G+  KA EL  L G +V ++V S  G ++
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY 63

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIF 54
          GR KI+++ +++K     TFSKR++G+  KA EL  L G +V ++V S  G ++
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-33
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	9e-33
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	3e-31
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	8e-29
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-28

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  114 bits (286), Expect = 3e-33
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR KI+++ +++K     TFSKR++G+  KA EL  L G +V ++V S  G ++      
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 70

Query: 61 FDKILNRYLDQNH 73
             ++     +  
Sbjct: 71 LQPMITSETGKAL 83

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  113 bits (283), Expect = 9e-33
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR KI+++ +++K     TFSKR++G+  KA EL  L G +V ++V S  G ++      
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 69

Query: 61 FDKILNRYLDQN 72
             ++     + 
Sbjct: 70 LQPMITSETGKA 81

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  109 bits (273), Expect = 3e-31
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           R+KI+IK +E+K    VTFSKR+ G+  KA EL VL G +V ++V S  G ++    P 
Sbjct: 17 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 76

Query: 61 FDKILNRYLDQN 72
          F+ I+ +   +N
Sbjct: 77 FEPIVTQQEGRN 88

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  102 bits (256), Expect = 8e-29
 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KIQI ++ D+ + QVTF+KR+ GL  KA EL VLC  E+ +I+F+ + K+F     D
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 61 FDKILNRYLDQNHSSLDEVNTIPCVQQHNKE 91
           DK+L +Y + N       N+   V+  NK+
Sbjct: 61 MDKVLLKYTEYNEPHESRTNS-DIVEALNKK 90

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  101 bits (254), Expect = 1e-28
 Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KIQI ++ D+ + QVTF+KR+ GL  KA EL VLC  E+ +I+F+ + K+F     D
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 61 FDKILNRYLDQNHSSLDE 78
           DK+L +Y    ++   E
Sbjct: 61 MDKVLLKY--TEYNEPHE 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.2e-38  Score=213.95  Aligned_cols=72  Identities=46%  Similarity=0.803  Sum_probs=70.0

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhhcC
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQN   72 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~~~   72 (211)
                      ||+||+|++|+|+++|+|||+|||+||||||.||||||||+||+|||||+|++|+|++|+|+.||+||...+
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~   72 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN   72 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC-
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999998855

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=3.2e-38  Score=218.21  Aligned_cols=74  Identities=45%  Similarity=0.785  Sum_probs=71.6

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhhcCCC
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHS   74 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~~~~~   74 (211)
                      ||+||+|++|+|+++|+|||+|||.||||||.||||||||+||+|||||+|++|+|++|+|+.||+||...+.+
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~   74 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999987643

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1e-35  Score=209.03  Aligned_cols=70  Identities=40%  Similarity=0.651  Sum_probs=68.7

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD   70 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~   70 (211)
                      ||+||+|++|+|+++|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+++.|+++|..
T Consensus        17 gR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G   86 (100)
T 1mnm_A           17 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999965

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1.9e-35  Score=205.10  Aligned_cols=70  Identities=30%  Similarity=0.508  Sum_probs=68.2

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD   70 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~   70 (211)
                      ||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||++|..
T Consensus        11 gR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A           11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             CSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             CcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            8999999999999999999999999999999999999999999999999999999999999999998854

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=9.5e-35  Score=205.40  Aligned_cols=68  Identities=31%  Similarity=0.529  Sum_probs=66.9

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHh
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRY   68 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry   68 (211)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+++
T Consensus        10 gR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B           10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-31
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-31
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	7e-31

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 2e-31
 Identities = 32/70 (45%), Positives = 48/70 (68%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR+KIQI ++ D+ + QVTF+KR+ GL  KA EL VLC  E+ +I+F+ + K+F     D
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 61 FDKILNRYLD 70
           DK+L +Y +
Sbjct: 61 MDKVLLKYTE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (270), Expect = 2e-31
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
           R+KI+IK +E+K    VTFSKR+ G+  KA EL VL G +V ++V S  G ++    P 
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 61 FDKILNRYLDQN 72
          F+ I+ +   +N
Sbjct: 63 FEPIVTQQEGRN 74

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 7e-31
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 1  GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD 60
          GR KI+++ +++K     TFSKR++G+  KA EL  L G +V ++V S  G ++      
Sbjct: 3  GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 62

Query: 61 FDKILNRYLDQN 72
             ++     + 
Sbjct: 63 LQPMITSETGKA 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-39  Score=212.71  Aligned_cols=70  Identities=46%  Similarity=0.816  Sum_probs=68.9

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD   70 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~   70 (211)
                      ||+||+|++|+|+..|+|||+|||.||||||.||||||||+||+|||||+|++|+|++|++++|++||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-37  Score=209.18  Aligned_cols=71  Identities=39%  Similarity=0.649  Sum_probs=69.5

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhhc
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQ   71 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~~   71 (211)
                      ||+||+|++|+|+..|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+|++|++||...
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999773

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-37  Score=207.79  Aligned_cols=70  Identities=30%  Similarity=0.508  Sum_probs=68.9

Q ss_pred             CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249            1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD   70 (211)
Q Consensus         1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~   70 (211)
                      ||+||+|++|+|+..|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|++++|+++|..
T Consensus         3 GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           3 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             CCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999965